Multiple sequence alignment - TraesCS2A01G095400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G095400 chr2A 100.000 2477 0 0 1 2477 48867176 48864700 0.000000e+00 4575.0
1 TraesCS2A01G095400 chr2B 91.413 2003 86 36 531 2477 72581493 72579521 0.000000e+00 2667.0
2 TraesCS2A01G095400 chr2B 95.636 275 5 3 1 269 72608830 72608557 3.780000e-118 435.0
3 TraesCS2A01G095400 chr2B 87.037 54 5 2 2333 2386 7773988 7774039 2.660000e-05 60.2
4 TraesCS2A01G095400 chr2D 91.042 1987 97 35 535 2477 45539870 45537921 0.000000e+00 2608.0
5 TraesCS2A01G095400 chr2D 92.903 310 10 6 1 310 45552508 45552211 8.130000e-120 440.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G095400 chr2A 48864700 48867176 2476 True 4575 4575 100.000 1 2477 1 chr2A.!!$R1 2476
1 TraesCS2A01G095400 chr2B 72579521 72581493 1972 True 2667 2667 91.413 531 2477 1 chr2B.!!$R1 1946
2 TraesCS2A01G095400 chr2D 45537921 45539870 1949 True 2608 2608 91.042 535 2477 1 chr2D.!!$R1 1942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 519 0.032678 CTCCATCTTAGACGCGCCAT 59.967 55.0 5.73 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 2528 0.533755 GTCTGCACAACACTCTGCCT 60.534 55.0 0.0 0.0 31.97 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.673368 GGGCAAGACTGAATACTGAACG 59.327 50.000 0.00 0.00 0.00 3.95
22 23 3.585862 GGCAAGACTGAATACTGAACGA 58.414 45.455 0.00 0.00 0.00 3.85
23 24 3.994392 GGCAAGACTGAATACTGAACGAA 59.006 43.478 0.00 0.00 0.00 3.85
24 25 4.092091 GGCAAGACTGAATACTGAACGAAG 59.908 45.833 0.00 0.00 0.00 3.79
37 38 2.544726 ACGAAGTTTGCAGCTAGGC 58.455 52.632 0.00 0.00 37.78 3.93
38 39 0.955919 ACGAAGTTTGCAGCTAGGCC 60.956 55.000 0.00 0.00 37.78 5.19
39 40 0.955428 CGAAGTTTGCAGCTAGGCCA 60.955 55.000 5.01 0.00 0.00 5.36
40 41 1.467920 GAAGTTTGCAGCTAGGCCAT 58.532 50.000 5.01 0.00 0.00 4.40
41 42 1.821136 GAAGTTTGCAGCTAGGCCATT 59.179 47.619 5.01 0.00 0.00 3.16
42 43 1.467920 AGTTTGCAGCTAGGCCATTC 58.532 50.000 5.01 0.00 0.00 2.67
43 44 1.005215 AGTTTGCAGCTAGGCCATTCT 59.995 47.619 5.01 0.00 0.00 2.40
44 45 1.821136 GTTTGCAGCTAGGCCATTCTT 59.179 47.619 5.01 0.00 0.00 2.52
45 46 2.220653 TTGCAGCTAGGCCATTCTTT 57.779 45.000 5.01 0.00 0.00 2.52
46 47 1.466856 TGCAGCTAGGCCATTCTTTG 58.533 50.000 5.01 0.00 0.00 2.77
47 48 0.101939 GCAGCTAGGCCATTCTTTGC 59.898 55.000 5.01 3.14 0.00 3.68
48 49 1.466856 CAGCTAGGCCATTCTTTGCA 58.533 50.000 5.01 0.00 0.00 4.08
49 50 1.820519 CAGCTAGGCCATTCTTTGCAA 59.179 47.619 5.01 0.00 0.00 4.08
50 51 2.097825 AGCTAGGCCATTCTTTGCAAG 58.902 47.619 5.01 0.00 0.00 4.01
51 52 2.094675 GCTAGGCCATTCTTTGCAAGA 58.905 47.619 5.01 0.00 35.26 3.02
52 53 2.692041 GCTAGGCCATTCTTTGCAAGAT 59.308 45.455 5.01 0.00 37.38 2.40
53 54 3.243334 GCTAGGCCATTCTTTGCAAGATC 60.243 47.826 5.01 0.00 37.38 2.75
54 55 2.811410 AGGCCATTCTTTGCAAGATCA 58.189 42.857 5.01 0.00 37.38 2.92
55 56 2.758979 AGGCCATTCTTTGCAAGATCAG 59.241 45.455 5.01 0.00 37.38 2.90
56 57 2.159142 GGCCATTCTTTGCAAGATCAGG 60.159 50.000 0.00 2.10 37.38 3.86
57 58 2.756760 GCCATTCTTTGCAAGATCAGGA 59.243 45.455 11.88 0.00 37.38 3.86
58 59 3.181489 GCCATTCTTTGCAAGATCAGGAG 60.181 47.826 11.88 0.37 37.38 3.69
59 60 4.015084 CCATTCTTTGCAAGATCAGGAGT 58.985 43.478 0.00 0.00 37.38 3.85
60 61 5.188434 CCATTCTTTGCAAGATCAGGAGTA 58.812 41.667 0.00 0.00 37.38 2.59
61 62 5.649395 CCATTCTTTGCAAGATCAGGAGTAA 59.351 40.000 0.00 0.00 37.38 2.24
62 63 6.404074 CCATTCTTTGCAAGATCAGGAGTAAC 60.404 42.308 0.00 0.00 37.38 2.50
63 64 5.489792 TCTTTGCAAGATCAGGAGTAACT 57.510 39.130 0.00 0.00 31.20 2.24
64 65 5.869579 TCTTTGCAAGATCAGGAGTAACTT 58.130 37.500 0.00 0.00 31.20 2.66
65 66 6.299141 TCTTTGCAAGATCAGGAGTAACTTT 58.701 36.000 0.00 0.00 31.20 2.66
66 67 6.772716 TCTTTGCAAGATCAGGAGTAACTTTT 59.227 34.615 0.00 0.00 31.20 2.27
67 68 6.959639 TTGCAAGATCAGGAGTAACTTTTT 57.040 33.333 0.00 0.00 0.00 1.94
68 69 6.317789 TGCAAGATCAGGAGTAACTTTTTG 57.682 37.500 0.00 0.00 0.00 2.44
69 70 5.827797 TGCAAGATCAGGAGTAACTTTTTGT 59.172 36.000 0.00 0.00 0.00 2.83
70 71 6.321181 TGCAAGATCAGGAGTAACTTTTTGTT 59.679 34.615 0.00 0.00 42.31 2.83
71 72 6.638468 GCAAGATCAGGAGTAACTTTTTGTTG 59.362 38.462 0.00 0.00 39.55 3.33
72 73 7.682021 GCAAGATCAGGAGTAACTTTTTGTTGT 60.682 37.037 0.00 0.00 39.55 3.32
73 74 8.836413 CAAGATCAGGAGTAACTTTTTGTTGTA 58.164 33.333 0.00 0.00 39.55 2.41
74 75 8.974060 AGATCAGGAGTAACTTTTTGTTGTAA 57.026 30.769 0.00 0.00 39.55 2.41
75 76 9.574516 AGATCAGGAGTAACTTTTTGTTGTAAT 57.425 29.630 0.00 0.00 39.55 1.89
76 77 9.612620 GATCAGGAGTAACTTTTTGTTGTAATG 57.387 33.333 0.00 0.00 39.55 1.90
77 78 8.740123 TCAGGAGTAACTTTTTGTTGTAATGA 57.260 30.769 0.00 0.00 39.55 2.57
78 79 9.349713 TCAGGAGTAACTTTTTGTTGTAATGAT 57.650 29.630 0.00 0.00 39.55 2.45
79 80 9.965824 CAGGAGTAACTTTTTGTTGTAATGATT 57.034 29.630 0.00 0.00 39.55 2.57
80 81 9.965824 AGGAGTAACTTTTTGTTGTAATGATTG 57.034 29.630 0.00 0.00 39.55 2.67
81 82 9.744468 GGAGTAACTTTTTGTTGTAATGATTGT 57.256 29.630 0.00 0.00 39.55 2.71
101 102 2.990740 TTTTTCCTAGTGCCCCATGT 57.009 45.000 0.00 0.00 0.00 3.21
102 103 2.214376 TTTTCCTAGTGCCCCATGTG 57.786 50.000 0.00 0.00 0.00 3.21
103 104 1.367346 TTTCCTAGTGCCCCATGTGA 58.633 50.000 0.00 0.00 0.00 3.58
104 105 0.618458 TTCCTAGTGCCCCATGTGAC 59.382 55.000 0.00 0.00 0.00 3.67
105 106 0.546507 TCCTAGTGCCCCATGTGACA 60.547 55.000 0.00 0.00 0.00 3.58
106 107 0.327924 CCTAGTGCCCCATGTGACAA 59.672 55.000 0.00 0.00 0.00 3.18
107 108 1.064463 CCTAGTGCCCCATGTGACAAT 60.064 52.381 0.00 0.00 0.00 2.71
108 109 2.172505 CCTAGTGCCCCATGTGACAATA 59.827 50.000 0.00 0.00 0.00 1.90
109 110 3.181440 CCTAGTGCCCCATGTGACAATAT 60.181 47.826 0.00 0.00 0.00 1.28
110 111 2.658285 AGTGCCCCATGTGACAATATG 58.342 47.619 0.00 0.00 0.00 1.78
111 112 2.025037 AGTGCCCCATGTGACAATATGT 60.025 45.455 0.00 0.00 0.00 2.29
112 113 2.760092 GTGCCCCATGTGACAATATGTT 59.240 45.455 0.00 0.00 0.00 2.71
113 114 3.195396 GTGCCCCATGTGACAATATGTTT 59.805 43.478 0.00 0.00 0.00 2.83
114 115 3.837146 TGCCCCATGTGACAATATGTTTT 59.163 39.130 0.00 0.00 0.00 2.43
115 116 5.019470 TGCCCCATGTGACAATATGTTTTA 58.981 37.500 0.00 0.00 0.00 1.52
116 117 5.481824 TGCCCCATGTGACAATATGTTTTAA 59.518 36.000 0.00 0.00 0.00 1.52
117 118 6.042143 GCCCCATGTGACAATATGTTTTAAG 58.958 40.000 0.00 0.00 0.00 1.85
118 119 6.572519 CCCCATGTGACAATATGTTTTAAGG 58.427 40.000 0.00 0.00 0.00 2.69
119 120 6.379703 CCCCATGTGACAATATGTTTTAAGGA 59.620 38.462 0.00 0.00 0.00 3.36
120 121 7.093552 CCCCATGTGACAATATGTTTTAAGGAA 60.094 37.037 0.00 0.00 0.00 3.36
121 122 8.310382 CCCATGTGACAATATGTTTTAAGGAAA 58.690 33.333 0.00 0.00 0.00 3.13
122 123 9.874205 CCATGTGACAATATGTTTTAAGGAAAT 57.126 29.630 0.00 0.00 0.00 2.17
134 135 9.981114 ATGTTTTAAGGAAATTTTGACGAGAAT 57.019 25.926 0.00 0.00 0.00 2.40
135 136 9.243637 TGTTTTAAGGAAATTTTGACGAGAATG 57.756 29.630 0.00 0.00 0.00 2.67
136 137 9.244799 GTTTTAAGGAAATTTTGACGAGAATGT 57.755 29.630 0.00 0.00 0.00 2.71
137 138 9.458374 TTTTAAGGAAATTTTGACGAGAATGTC 57.542 29.630 0.00 0.00 39.37 3.06
138 139 5.629079 AGGAAATTTTGACGAGAATGTCC 57.371 39.130 0.00 0.00 39.13 4.02
139 140 4.154195 AGGAAATTTTGACGAGAATGTCCG 59.846 41.667 0.00 0.00 42.20 4.79
140 141 4.083484 GGAAATTTTGACGAGAATGTCCGT 60.083 41.667 0.00 0.00 42.17 4.69
141 142 5.121142 GGAAATTTTGACGAGAATGTCCGTA 59.879 40.000 0.00 0.00 39.30 4.02
142 143 5.779806 AATTTTGACGAGAATGTCCGTAG 57.220 39.130 0.00 0.00 39.30 3.51
143 144 2.273370 TTGACGAGAATGTCCGTAGC 57.727 50.000 0.00 0.00 39.30 3.58
144 145 1.460504 TGACGAGAATGTCCGTAGCT 58.539 50.000 0.00 0.00 39.30 3.32
145 146 2.635714 TGACGAGAATGTCCGTAGCTA 58.364 47.619 0.00 0.00 39.30 3.32
146 147 2.612672 TGACGAGAATGTCCGTAGCTAG 59.387 50.000 0.00 0.00 39.30 3.42
147 148 2.871022 GACGAGAATGTCCGTAGCTAGA 59.129 50.000 0.00 0.00 39.30 2.43
148 149 3.478509 ACGAGAATGTCCGTAGCTAGAT 58.521 45.455 0.00 0.00 37.23 1.98
149 150 4.639334 ACGAGAATGTCCGTAGCTAGATA 58.361 43.478 0.00 0.00 37.23 1.98
150 151 4.691685 ACGAGAATGTCCGTAGCTAGATAG 59.308 45.833 0.00 0.00 37.23 2.08
151 152 8.516639 GACGAGAATGTCCGTAGCTAGATAGC 62.517 50.000 3.58 3.58 43.24 2.97
168 169 3.254629 GCTGAGGAGCCATGTCAAA 57.745 52.632 0.00 0.00 39.57 2.69
169 170 1.760192 GCTGAGGAGCCATGTCAAAT 58.240 50.000 0.00 0.00 39.57 2.32
170 171 2.923121 GCTGAGGAGCCATGTCAAATA 58.077 47.619 0.00 0.00 39.57 1.40
171 172 3.282021 GCTGAGGAGCCATGTCAAATAA 58.718 45.455 0.00 0.00 39.57 1.40
172 173 3.314635 GCTGAGGAGCCATGTCAAATAAG 59.685 47.826 0.00 0.00 39.57 1.73
173 174 4.774124 CTGAGGAGCCATGTCAAATAAGA 58.226 43.478 0.00 0.00 0.00 2.10
174 175 5.178096 TGAGGAGCCATGTCAAATAAGAA 57.822 39.130 0.00 0.00 0.00 2.52
175 176 5.569355 TGAGGAGCCATGTCAAATAAGAAA 58.431 37.500 0.00 0.00 0.00 2.52
176 177 6.009589 TGAGGAGCCATGTCAAATAAGAAAA 58.990 36.000 0.00 0.00 0.00 2.29
177 178 6.493115 TGAGGAGCCATGTCAAATAAGAAAAA 59.507 34.615 0.00 0.00 0.00 1.94
178 179 7.178983 TGAGGAGCCATGTCAAATAAGAAAAAT 59.821 33.333 0.00 0.00 0.00 1.82
179 180 7.910584 AGGAGCCATGTCAAATAAGAAAAATT 58.089 30.769 0.00 0.00 0.00 1.82
180 181 9.034800 AGGAGCCATGTCAAATAAGAAAAATTA 57.965 29.630 0.00 0.00 0.00 1.40
181 182 9.305925 GGAGCCATGTCAAATAAGAAAAATTAG 57.694 33.333 0.00 0.00 0.00 1.73
184 185 9.305925 GCCATGTCAAATAAGAAAAATTAGAGG 57.694 33.333 0.00 0.00 0.00 3.69
206 207 5.666462 GGTTTGTTACAAACCCAAGAATGT 58.334 37.500 36.57 0.00 42.89 2.71
207 208 6.807789 GGTTTGTTACAAACCCAAGAATGTA 58.192 36.000 36.57 1.32 42.89 2.29
208 209 6.698329 GGTTTGTTACAAACCCAAGAATGTAC 59.302 38.462 36.57 15.94 42.89 2.90
209 210 7.259161 GTTTGTTACAAACCCAAGAATGTACA 58.741 34.615 25.35 0.00 0.00 2.90
210 211 7.406031 TTGTTACAAACCCAAGAATGTACAA 57.594 32.000 0.00 0.00 0.00 2.41
211 212 7.033530 TGTTACAAACCCAAGAATGTACAAG 57.966 36.000 0.00 0.00 0.00 3.16
212 213 6.603997 TGTTACAAACCCAAGAATGTACAAGT 59.396 34.615 0.00 0.00 0.00 3.16
213 214 7.122948 TGTTACAAACCCAAGAATGTACAAGTT 59.877 33.333 0.00 0.00 0.00 2.66
214 215 6.538945 ACAAACCCAAGAATGTACAAGTTT 57.461 33.333 0.00 0.00 0.00 2.66
215 216 6.941857 ACAAACCCAAGAATGTACAAGTTTT 58.058 32.000 0.00 0.00 0.00 2.43
216 217 6.816140 ACAAACCCAAGAATGTACAAGTTTTG 59.184 34.615 0.00 3.08 0.00 2.44
217 218 4.944048 ACCCAAGAATGTACAAGTTTTGC 58.056 39.130 0.00 0.00 0.00 3.68
218 219 4.202212 ACCCAAGAATGTACAAGTTTTGCC 60.202 41.667 0.00 0.00 0.00 4.52
219 220 4.039124 CCCAAGAATGTACAAGTTTTGCCT 59.961 41.667 0.00 0.00 0.00 4.75
220 221 5.453198 CCCAAGAATGTACAAGTTTTGCCTT 60.453 40.000 0.00 0.00 0.00 4.35
221 222 6.048509 CCAAGAATGTACAAGTTTTGCCTTT 58.951 36.000 0.00 0.00 0.00 3.11
222 223 6.538381 CCAAGAATGTACAAGTTTTGCCTTTT 59.462 34.615 0.00 0.00 0.00 2.27
223 224 7.254421 CCAAGAATGTACAAGTTTTGCCTTTTC 60.254 37.037 0.00 0.00 0.00 2.29
224 225 7.112452 AGAATGTACAAGTTTTGCCTTTTCT 57.888 32.000 0.00 0.00 0.00 2.52
225 226 7.555965 AGAATGTACAAGTTTTGCCTTTTCTT 58.444 30.769 0.00 0.00 0.00 2.52
226 227 8.040727 AGAATGTACAAGTTTTGCCTTTTCTTT 58.959 29.630 0.00 0.00 0.00 2.52
227 228 9.308318 GAATGTACAAGTTTTGCCTTTTCTTTA 57.692 29.630 0.00 0.00 0.00 1.85
228 229 9.660180 AATGTACAAGTTTTGCCTTTTCTTTAA 57.340 25.926 0.00 0.00 0.00 1.52
229 230 9.830975 ATGTACAAGTTTTGCCTTTTCTTTAAT 57.169 25.926 0.00 0.00 0.00 1.40
230 231 9.092876 TGTACAAGTTTTGCCTTTTCTTTAATG 57.907 29.630 0.00 0.00 0.00 1.90
231 232 9.308318 GTACAAGTTTTGCCTTTTCTTTAATGA 57.692 29.630 0.00 0.00 0.00 2.57
232 233 8.962884 ACAAGTTTTGCCTTTTCTTTAATGAT 57.037 26.923 0.00 0.00 0.00 2.45
233 234 9.394767 ACAAGTTTTGCCTTTTCTTTAATGATT 57.605 25.926 0.00 0.00 0.00 2.57
239 240 9.751542 TTTGCCTTTTCTTTAATGATTTTACGA 57.248 25.926 0.00 0.00 0.00 3.43
240 241 9.921637 TTGCCTTTTCTTTAATGATTTTACGAT 57.078 25.926 0.00 0.00 0.00 3.73
241 242 9.921637 TGCCTTTTCTTTAATGATTTTACGATT 57.078 25.926 0.00 0.00 0.00 3.34
262 263 9.405587 ACGATTGTTTTATTATGGACTTTGTTG 57.594 29.630 0.00 0.00 0.00 3.33
263 264 8.859156 CGATTGTTTTATTATGGACTTTGTTGG 58.141 33.333 0.00 0.00 0.00 3.77
264 265 9.705290 GATTGTTTTATTATGGACTTTGTTGGT 57.295 29.630 0.00 0.00 0.00 3.67
271 272 9.967451 TTATTATGGACTTTGTTGGTATCTTCA 57.033 29.630 0.00 0.00 0.00 3.02
272 273 8.877864 ATTATGGACTTTGTTGGTATCTTCAA 57.122 30.769 0.00 0.00 0.00 2.69
273 274 8.698973 TTATGGACTTTGTTGGTATCTTCAAA 57.301 30.769 0.00 0.00 0.00 2.69
274 275 6.633500 TGGACTTTGTTGGTATCTTCAAAG 57.367 37.500 16.19 16.19 46.62 2.77
279 280 7.264373 CTTTGTTGGTATCTTCAAAGTCTGT 57.736 36.000 12.17 0.00 40.66 3.41
280 281 7.639113 TTTGTTGGTATCTTCAAAGTCTGTT 57.361 32.000 0.00 0.00 0.00 3.16
281 282 7.639113 TTGTTGGTATCTTCAAAGTCTGTTT 57.361 32.000 0.00 0.00 0.00 2.83
282 283 8.740123 TTGTTGGTATCTTCAAAGTCTGTTTA 57.260 30.769 0.00 0.00 0.00 2.01
283 284 8.918202 TGTTGGTATCTTCAAAGTCTGTTTAT 57.082 30.769 0.00 0.00 0.00 1.40
284 285 9.349713 TGTTGGTATCTTCAAAGTCTGTTTATT 57.650 29.630 0.00 0.00 0.00 1.40
287 288 9.793259 TGGTATCTTCAAAGTCTGTTTATTTCT 57.207 29.630 0.00 0.00 0.00 2.52
292 293 9.408648 TCTTCAAAGTCTGTTTATTTCTTTCCT 57.591 29.630 0.00 0.00 0.00 3.36
312 313 9.495572 CTTTCCTTATATTCTCCAATAGACACC 57.504 37.037 0.00 0.00 32.51 4.16
313 314 7.228314 TCCTTATATTCTCCAATAGACACCG 57.772 40.000 0.00 0.00 32.51 4.94
314 315 5.869888 CCTTATATTCTCCAATAGACACCGC 59.130 44.000 0.00 0.00 32.51 5.68
315 316 4.955811 ATATTCTCCAATAGACACCGCA 57.044 40.909 0.00 0.00 32.51 5.69
316 317 2.672961 TTCTCCAATAGACACCGCAG 57.327 50.000 0.00 0.00 32.51 5.18
317 318 1.207089 TTCTCCAATAGACACCGCAGG 59.793 52.381 0.00 0.00 45.24 4.85
339 340 5.269505 GTGTACACCTTGAGATATGCTCT 57.730 43.478 15.42 0.00 44.27 4.09
340 341 5.665459 GTGTACACCTTGAGATATGCTCTT 58.335 41.667 15.42 0.00 44.27 2.85
341 342 5.521735 GTGTACACCTTGAGATATGCTCTTG 59.478 44.000 15.42 0.00 44.27 3.02
342 343 4.833478 ACACCTTGAGATATGCTCTTGT 57.167 40.909 0.00 0.00 44.27 3.16
343 344 4.511527 ACACCTTGAGATATGCTCTTGTG 58.488 43.478 0.00 0.00 44.27 3.33
344 345 3.311871 CACCTTGAGATATGCTCTTGTGC 59.688 47.826 0.00 0.00 44.27 4.57
346 347 3.311871 CCTTGAGATATGCTCTTGTGCAC 59.688 47.826 10.75 10.75 46.33 4.57
347 348 3.615224 TGAGATATGCTCTTGTGCACA 57.385 42.857 17.42 17.42 46.33 4.57
348 349 3.264947 TGAGATATGCTCTTGTGCACAC 58.735 45.455 21.56 8.79 46.33 3.82
349 350 3.264947 GAGATATGCTCTTGTGCACACA 58.735 45.455 21.56 14.91 46.33 3.72
350 351 3.005554 AGATATGCTCTTGTGCACACAC 58.994 45.455 21.56 9.77 46.33 3.82
351 352 5.389531 GAGATATGCTCTTGTGCACACACA 61.390 45.833 21.56 15.33 46.14 3.72
352 353 6.651714 GAGATATGCTCTTGTGCACACACAT 61.652 44.000 21.56 20.77 44.84 3.21
353 354 7.396685 GAGATATGCTCTTGTGCACACACATA 61.397 42.308 21.56 22.09 44.84 2.29
354 355 9.303241 GAGATATGCTCTTGTGCACACACATAC 62.303 44.444 21.56 16.31 44.84 2.39
360 361 2.532531 GTGCACACACATACATCTGC 57.467 50.000 13.17 0.00 46.61 4.26
361 362 1.805943 GTGCACACACATACATCTGCA 59.194 47.619 13.17 0.00 46.61 4.41
362 363 2.078392 TGCACACACATACATCTGCAG 58.922 47.619 7.63 7.63 31.24 4.41
363 364 1.202110 GCACACACATACATCTGCAGC 60.202 52.381 9.47 0.00 0.00 5.25
364 365 2.353323 CACACACATACATCTGCAGCT 58.647 47.619 9.47 0.00 0.00 4.24
365 366 2.095372 CACACACATACATCTGCAGCTG 59.905 50.000 15.82 15.82 0.00 4.24
366 367 1.063616 CACACATACATCTGCAGCTGC 59.936 52.381 31.89 31.89 42.50 5.25
367 368 1.065636 ACACATACATCTGCAGCTGCT 60.066 47.619 36.61 20.43 42.66 4.24
368 369 2.014857 CACATACATCTGCAGCTGCTT 58.985 47.619 36.61 20.15 42.66 3.91
369 370 2.422479 CACATACATCTGCAGCTGCTTT 59.578 45.455 36.61 19.79 42.66 3.51
370 371 2.422479 ACATACATCTGCAGCTGCTTTG 59.578 45.455 36.61 29.74 42.66 2.77
371 372 2.477845 TACATCTGCAGCTGCTTTGA 57.522 45.000 36.61 29.30 42.66 2.69
372 373 1.166129 ACATCTGCAGCTGCTTTGAG 58.834 50.000 36.61 25.86 42.66 3.02
373 374 1.271217 ACATCTGCAGCTGCTTTGAGA 60.271 47.619 36.61 29.76 42.66 3.27
374 375 2.017782 CATCTGCAGCTGCTTTGAGAT 58.982 47.619 36.61 30.50 42.66 2.75
375 376 1.450025 TCTGCAGCTGCTTTGAGATG 58.550 50.000 36.61 16.80 42.66 2.90
376 377 1.166129 CTGCAGCTGCTTTGAGATGT 58.834 50.000 36.61 0.00 42.66 3.06
377 378 0.879090 TGCAGCTGCTTTGAGATGTG 59.121 50.000 36.61 0.00 42.66 3.21
378 379 0.456312 GCAGCTGCTTTGAGATGTGC 60.456 55.000 31.33 0.00 38.21 4.57
379 380 0.879090 CAGCTGCTTTGAGATGTGCA 59.121 50.000 0.00 0.00 0.00 4.57
386 387 5.556355 TGCTTTGAGATGTGCAGATAAAG 57.444 39.130 11.40 11.40 0.00 1.85
387 388 5.005740 TGCTTTGAGATGTGCAGATAAAGT 58.994 37.500 15.22 0.00 0.00 2.66
388 389 5.122869 TGCTTTGAGATGTGCAGATAAAGTC 59.877 40.000 15.22 10.15 0.00 3.01
389 390 5.726138 GCTTTGAGATGTGCAGATAAAGTCG 60.726 44.000 15.22 0.00 0.00 4.18
390 391 4.456280 TGAGATGTGCAGATAAAGTCGT 57.544 40.909 0.00 0.00 0.00 4.34
391 392 4.176271 TGAGATGTGCAGATAAAGTCGTG 58.824 43.478 0.00 0.00 0.00 4.35
392 393 4.177026 GAGATGTGCAGATAAAGTCGTGT 58.823 43.478 0.00 0.00 0.00 4.49
393 394 4.569943 AGATGTGCAGATAAAGTCGTGTT 58.430 39.130 0.00 0.00 0.00 3.32
394 395 4.997395 AGATGTGCAGATAAAGTCGTGTTT 59.003 37.500 0.00 0.00 0.00 2.83
395 396 5.470098 AGATGTGCAGATAAAGTCGTGTTTT 59.530 36.000 0.00 0.00 0.00 2.43
396 397 5.493133 TGTGCAGATAAAGTCGTGTTTTT 57.507 34.783 0.00 0.00 0.00 1.94
397 398 6.606234 TGTGCAGATAAAGTCGTGTTTTTA 57.394 33.333 0.00 0.00 0.00 1.52
398 399 7.197071 TGTGCAGATAAAGTCGTGTTTTTAT 57.803 32.000 0.00 0.00 33.43 1.40
399 400 7.644490 TGTGCAGATAAAGTCGTGTTTTTATT 58.356 30.769 0.00 0.00 31.50 1.40
400 401 8.775527 TGTGCAGATAAAGTCGTGTTTTTATTA 58.224 29.630 0.00 0.00 31.50 0.98
401 402 9.262472 GTGCAGATAAAGTCGTGTTTTTATTAG 57.738 33.333 0.00 0.00 31.50 1.73
402 403 8.995220 TGCAGATAAAGTCGTGTTTTTATTAGT 58.005 29.630 0.00 0.00 31.50 2.24
403 404 9.821662 GCAGATAAAGTCGTGTTTTTATTAGTT 57.178 29.630 0.00 0.00 31.50 2.24
410 411 9.874215 AAGTCGTGTTTTTATTAGTTAAAGAGC 57.126 29.630 0.00 0.00 31.57 4.09
411 412 9.269453 AGTCGTGTTTTTATTAGTTAAAGAGCT 57.731 29.630 0.00 0.00 31.57 4.09
412 413 9.874215 GTCGTGTTTTTATTAGTTAAAGAGCTT 57.126 29.630 0.00 0.00 31.57 3.74
442 443 8.800370 TGTTTACATAAATCAGCATACAAGGA 57.200 30.769 0.00 0.00 0.00 3.36
443 444 9.237187 TGTTTACATAAATCAGCATACAAGGAA 57.763 29.630 0.00 0.00 0.00 3.36
448 449 8.559536 ACATAAATCAGCATACAAGGAAATACG 58.440 33.333 0.00 0.00 0.00 3.06
449 450 6.377327 AAATCAGCATACAAGGAAATACGG 57.623 37.500 0.00 0.00 0.00 4.02
450 451 4.481368 TCAGCATACAAGGAAATACGGT 57.519 40.909 0.00 0.00 0.00 4.83
451 452 5.601583 TCAGCATACAAGGAAATACGGTA 57.398 39.130 0.00 0.00 0.00 4.02
452 453 6.169557 TCAGCATACAAGGAAATACGGTAT 57.830 37.500 0.00 0.00 0.00 2.73
453 454 6.220930 TCAGCATACAAGGAAATACGGTATC 58.779 40.000 0.30 0.00 0.00 2.24
454 455 5.989168 CAGCATACAAGGAAATACGGTATCA 59.011 40.000 0.30 0.00 0.00 2.15
455 456 6.146184 CAGCATACAAGGAAATACGGTATCAG 59.854 42.308 0.30 0.00 0.00 2.90
456 457 5.989777 GCATACAAGGAAATACGGTATCAGT 59.010 40.000 0.30 0.00 0.00 3.41
457 458 6.482308 GCATACAAGGAAATACGGTATCAGTT 59.518 38.462 0.30 0.00 0.00 3.16
458 459 7.307219 GCATACAAGGAAATACGGTATCAGTTC 60.307 40.741 0.30 2.24 0.00 3.01
459 460 6.045072 ACAAGGAAATACGGTATCAGTTCA 57.955 37.500 0.30 0.00 0.00 3.18
460 461 6.106673 ACAAGGAAATACGGTATCAGTTCAG 58.893 40.000 0.30 0.21 0.00 3.02
461 462 5.277857 AGGAAATACGGTATCAGTTCAGG 57.722 43.478 0.30 0.00 0.00 3.86
462 463 3.808174 GGAAATACGGTATCAGTTCAGGC 59.192 47.826 0.30 0.00 0.00 4.85
463 464 4.439057 GAAATACGGTATCAGTTCAGGCA 58.561 43.478 0.30 0.00 0.00 4.75
464 465 4.481368 AATACGGTATCAGTTCAGGCAA 57.519 40.909 0.30 0.00 0.00 4.52
465 466 2.386661 ACGGTATCAGTTCAGGCAAG 57.613 50.000 0.00 0.00 0.00 4.01
466 467 1.623811 ACGGTATCAGTTCAGGCAAGT 59.376 47.619 0.00 0.00 0.00 3.16
467 468 2.829720 ACGGTATCAGTTCAGGCAAGTA 59.170 45.455 0.00 0.00 0.00 2.24
468 469 3.187700 CGGTATCAGTTCAGGCAAGTAC 58.812 50.000 0.00 0.00 0.00 2.73
469 470 3.368013 CGGTATCAGTTCAGGCAAGTACA 60.368 47.826 0.00 0.00 0.00 2.90
470 471 4.680708 CGGTATCAGTTCAGGCAAGTACAT 60.681 45.833 0.00 0.00 0.00 2.29
471 472 5.186198 GGTATCAGTTCAGGCAAGTACATT 58.814 41.667 0.00 0.00 0.00 2.71
472 473 5.294552 GGTATCAGTTCAGGCAAGTACATTC 59.705 44.000 0.00 0.00 0.00 2.67
473 474 3.325870 TCAGTTCAGGCAAGTACATTCG 58.674 45.455 0.00 0.00 0.00 3.34
474 475 2.076863 AGTTCAGGCAAGTACATTCGC 58.923 47.619 0.00 0.00 0.00 4.70
475 476 1.804151 GTTCAGGCAAGTACATTCGCA 59.196 47.619 0.00 0.00 0.00 5.10
476 477 1.725641 TCAGGCAAGTACATTCGCAG 58.274 50.000 0.00 0.00 0.00 5.18
477 478 0.097674 CAGGCAAGTACATTCGCAGC 59.902 55.000 0.00 0.00 0.00 5.25
478 479 1.026718 AGGCAAGTACATTCGCAGCC 61.027 55.000 0.00 0.00 40.85 4.85
479 480 1.305219 GGCAAGTACATTCGCAGCCA 61.305 55.000 0.00 0.00 40.29 4.75
480 481 0.521291 GCAAGTACATTCGCAGCCAA 59.479 50.000 0.00 0.00 0.00 4.52
481 482 1.133025 GCAAGTACATTCGCAGCCAAT 59.867 47.619 0.00 0.00 0.00 3.16
482 483 2.789208 CAAGTACATTCGCAGCCAATG 58.211 47.619 10.89 10.89 37.29 2.82
483 484 2.401583 AGTACATTCGCAGCCAATGA 57.598 45.000 18.50 1.03 35.54 2.57
484 485 2.710377 AGTACATTCGCAGCCAATGAA 58.290 42.857 18.50 1.38 35.54 2.57
485 486 3.081061 AGTACATTCGCAGCCAATGAAA 58.919 40.909 18.50 4.44 35.54 2.69
486 487 3.505680 AGTACATTCGCAGCCAATGAAAA 59.494 39.130 18.50 2.16 35.54 2.29
487 488 2.950433 ACATTCGCAGCCAATGAAAAG 58.050 42.857 18.50 1.87 35.54 2.27
488 489 2.557924 ACATTCGCAGCCAATGAAAAGA 59.442 40.909 18.50 0.00 35.54 2.52
489 490 3.194116 ACATTCGCAGCCAATGAAAAGAT 59.806 39.130 18.50 0.00 35.54 2.40
490 491 2.925578 TCGCAGCCAATGAAAAGATG 57.074 45.000 0.00 0.00 0.00 2.90
491 492 1.135315 TCGCAGCCAATGAAAAGATGC 60.135 47.619 0.00 0.00 0.00 3.91
492 493 1.403116 CGCAGCCAATGAAAAGATGCA 60.403 47.619 0.00 0.00 32.58 3.96
493 494 1.997606 GCAGCCAATGAAAAGATGCAC 59.002 47.619 0.00 0.00 32.58 4.57
494 495 2.610976 GCAGCCAATGAAAAGATGCACA 60.611 45.455 0.00 0.00 32.58 4.57
495 496 3.857052 CAGCCAATGAAAAGATGCACAT 58.143 40.909 0.00 0.00 0.00 3.21
496 497 4.250464 CAGCCAATGAAAAGATGCACATT 58.750 39.130 0.00 0.00 34.01 2.71
497 498 5.412640 CAGCCAATGAAAAGATGCACATTA 58.587 37.500 0.00 0.00 32.75 1.90
498 499 5.290158 CAGCCAATGAAAAGATGCACATTAC 59.710 40.000 0.00 0.00 32.75 1.89
499 500 4.567959 GCCAATGAAAAGATGCACATTACC 59.432 41.667 0.00 0.00 32.75 2.85
500 501 5.625197 GCCAATGAAAAGATGCACATTACCT 60.625 40.000 0.00 0.00 32.75 3.08
501 502 6.038356 CCAATGAAAAGATGCACATTACCTC 58.962 40.000 0.00 0.00 32.75 3.85
502 503 5.841957 ATGAAAAGATGCACATTACCTCC 57.158 39.130 0.00 0.00 0.00 4.30
503 504 4.661222 TGAAAAGATGCACATTACCTCCA 58.339 39.130 0.00 0.00 0.00 3.86
504 505 5.263599 TGAAAAGATGCACATTACCTCCAT 58.736 37.500 0.00 0.00 0.00 3.41
505 506 5.357878 TGAAAAGATGCACATTACCTCCATC 59.642 40.000 0.00 0.00 34.10 3.51
506 507 4.785346 AAGATGCACATTACCTCCATCT 57.215 40.909 0.00 0.00 43.08 2.90
507 508 4.785346 AGATGCACATTACCTCCATCTT 57.215 40.909 0.00 0.00 39.50 2.40
508 509 5.894298 AGATGCACATTACCTCCATCTTA 57.106 39.130 0.00 0.00 39.50 2.10
509 510 5.862845 AGATGCACATTACCTCCATCTTAG 58.137 41.667 0.00 0.00 39.50 2.18
510 511 5.604231 AGATGCACATTACCTCCATCTTAGA 59.396 40.000 0.00 0.00 39.50 2.10
511 512 5.023533 TGCACATTACCTCCATCTTAGAC 57.976 43.478 0.00 0.00 0.00 2.59
512 513 4.051922 GCACATTACCTCCATCTTAGACG 58.948 47.826 0.00 0.00 0.00 4.18
513 514 4.051922 CACATTACCTCCATCTTAGACGC 58.948 47.826 0.00 0.00 0.00 5.19
514 515 3.243434 ACATTACCTCCATCTTAGACGCG 60.243 47.826 3.53 3.53 0.00 6.01
515 516 0.666913 TACCTCCATCTTAGACGCGC 59.333 55.000 5.73 0.00 0.00 6.86
516 517 1.300233 CCTCCATCTTAGACGCGCC 60.300 63.158 5.73 0.00 0.00 6.53
517 518 1.437573 CTCCATCTTAGACGCGCCA 59.562 57.895 5.73 0.00 0.00 5.69
518 519 0.032678 CTCCATCTTAGACGCGCCAT 59.967 55.000 5.73 0.00 0.00 4.40
519 520 0.464036 TCCATCTTAGACGCGCCATT 59.536 50.000 5.73 0.00 0.00 3.16
520 521 1.134521 TCCATCTTAGACGCGCCATTT 60.135 47.619 5.73 0.00 0.00 2.32
521 522 2.101750 TCCATCTTAGACGCGCCATTTA 59.898 45.455 5.73 0.00 0.00 1.40
522 523 2.869801 CCATCTTAGACGCGCCATTTAA 59.130 45.455 5.73 0.00 0.00 1.52
523 524 3.498397 CCATCTTAGACGCGCCATTTAAT 59.502 43.478 5.73 0.00 0.00 1.40
524 525 4.457810 CATCTTAGACGCGCCATTTAATG 58.542 43.478 5.73 0.00 0.00 1.90
525 526 3.787785 TCTTAGACGCGCCATTTAATGA 58.212 40.909 5.73 0.00 0.00 2.57
526 527 3.802139 TCTTAGACGCGCCATTTAATGAG 59.198 43.478 5.73 1.60 0.00 2.90
527 528 0.657840 AGACGCGCCATTTAATGAGC 59.342 50.000 5.73 10.30 0.00 4.26
528 529 0.317020 GACGCGCCATTTAATGAGCC 60.317 55.000 5.73 2.72 32.70 4.70
529 530 1.029408 ACGCGCCATTTAATGAGCCA 61.029 50.000 5.73 0.00 32.70 4.75
533 534 2.417243 GCGCCATTTAATGAGCCAGTTT 60.417 45.455 6.50 0.00 0.00 2.66
566 567 1.403323 TGCAAGCATGAACGAAACACA 59.597 42.857 0.00 0.00 0.00 3.72
574 575 4.379813 GCATGAACGAAACACAATCCAGAT 60.380 41.667 0.00 0.00 0.00 2.90
583 584 5.886960 AACACAATCCAGATAAAGTGAGC 57.113 39.130 12.11 0.00 0.00 4.26
621 622 2.084610 TGCAAGTGACCGAAGATCTG 57.915 50.000 0.00 0.00 0.00 2.90
724 725 2.164219 ACGGCGAGTATAACGGAAGAAA 59.836 45.455 16.62 0.00 0.00 2.52
725 726 2.533129 CGGCGAGTATAACGGAAGAAAC 59.467 50.000 0.00 0.00 0.00 2.78
809 828 3.159298 GTCCAGCCATTGACGATGT 57.841 52.632 1.96 0.00 33.71 3.06
810 829 1.453155 GTCCAGCCATTGACGATGTT 58.547 50.000 1.96 0.00 33.71 2.71
953 975 3.839432 CCGTCGCCTTCCCTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
955 977 2.364448 GTCGCCTTCCCTCCTCCT 60.364 66.667 0.00 0.00 0.00 3.69
956 978 2.042843 TCGCCTTCCCTCCTCCTC 60.043 66.667 0.00 0.00 0.00 3.71
957 979 3.532155 CGCCTTCCCTCCTCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
958 980 3.157949 GCCTTCCCTCCTCCTCGG 61.158 72.222 0.00 0.00 0.00 4.63
960 982 3.157949 CTTCCCTCCTCCTCGGCC 61.158 72.222 0.00 0.00 0.00 6.13
961 983 3.984186 CTTCCCTCCTCCTCGGCCA 62.984 68.421 2.24 0.00 0.00 5.36
1481 1514 2.507992 CTGGCTCTTCTGACGCCG 60.508 66.667 7.15 0.00 46.67 6.46
1726 1764 2.803956 GCAAAACTGAACGGCTACTACA 59.196 45.455 0.00 0.00 0.00 2.74
1729 1767 5.382303 CAAAACTGAACGGCTACTACATTG 58.618 41.667 0.00 0.00 0.00 2.82
1900 1939 1.754380 AAGAGCCTGCACACGGTGTA 61.754 55.000 14.30 0.00 35.75 2.90
1952 1991 3.431766 CGATTCTTAGTGGGGATTCGGTT 60.432 47.826 0.00 0.00 34.11 4.44
2022 2061 0.531532 CATCTTCAGTAGGGCCTGCG 60.532 60.000 18.53 11.60 32.32 5.18
2058 2097 2.224018 GGGATGAGAGTGTCTGATGAGC 60.224 54.545 0.00 0.00 0.00 4.26
2084 2149 8.537223 CATCACAAAGAACTGTTGAAGAAATTG 58.463 33.333 0.00 0.00 0.00 2.32
2092 2157 7.442364 AGAACTGTTGAAGAAATTGAGAATCGA 59.558 33.333 0.00 0.00 38.61 3.59
2125 2190 5.003804 ACTGAATAGACGACCAAAGCATTT 58.996 37.500 0.00 0.00 40.26 2.32
2231 2300 7.660030 TGATGTCAGAATATGGTAGAACTCA 57.340 36.000 0.00 0.00 0.00 3.41
2238 2307 7.987458 TCAGAATATGGTAGAACTCAATGGAAC 59.013 37.037 0.00 0.00 0.00 3.62
2253 2322 3.266510 TGGAACGAAGCAATAGCAGAT 57.733 42.857 0.00 0.00 45.49 2.90
2313 2382 5.243207 ACTTATGCGGTTATAGCCCATTAC 58.757 41.667 12.48 0.00 0.00 1.89
2354 2423 2.286732 AGCCTCCATGGAGCCCTT 60.287 61.111 32.97 16.13 40.69 3.95
2355 2424 1.932757 AGCCTCCATGGAGCCCTTT 60.933 57.895 32.97 14.48 40.69 3.11
2467 2539 6.537660 GTCGGTTTTATATAAGGCAGAGTGTT 59.462 38.462 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.673368 CGTTCAGTATTCAGTCTTGCCC 59.327 50.000 0.00 0.00 0.00 5.36
1 2 3.585862 TCGTTCAGTATTCAGTCTTGCC 58.414 45.455 0.00 0.00 0.00 4.52
2 3 4.686554 ACTTCGTTCAGTATTCAGTCTTGC 59.313 41.667 0.00 0.00 0.00 4.01
3 4 6.771188 AACTTCGTTCAGTATTCAGTCTTG 57.229 37.500 0.00 0.00 0.00 3.02
4 5 6.292919 GCAAACTTCGTTCAGTATTCAGTCTT 60.293 38.462 0.00 0.00 0.00 3.01
5 6 5.177696 GCAAACTTCGTTCAGTATTCAGTCT 59.822 40.000 0.00 0.00 0.00 3.24
6 7 5.050363 TGCAAACTTCGTTCAGTATTCAGTC 60.050 40.000 0.00 0.00 0.00 3.51
7 8 4.814234 TGCAAACTTCGTTCAGTATTCAGT 59.186 37.500 0.00 0.00 0.00 3.41
8 9 5.342806 TGCAAACTTCGTTCAGTATTCAG 57.657 39.130 0.00 0.00 0.00 3.02
9 10 4.319477 GCTGCAAACTTCGTTCAGTATTCA 60.319 41.667 0.00 0.00 0.00 2.57
10 11 4.083802 AGCTGCAAACTTCGTTCAGTATTC 60.084 41.667 1.02 0.00 0.00 1.75
11 12 3.815401 AGCTGCAAACTTCGTTCAGTATT 59.185 39.130 1.02 0.00 0.00 1.89
12 13 3.403038 AGCTGCAAACTTCGTTCAGTAT 58.597 40.909 1.02 0.00 0.00 2.12
13 14 2.833794 AGCTGCAAACTTCGTTCAGTA 58.166 42.857 1.02 0.00 0.00 2.74
14 15 1.668419 AGCTGCAAACTTCGTTCAGT 58.332 45.000 1.02 0.00 0.00 3.41
15 16 2.158449 CCTAGCTGCAAACTTCGTTCAG 59.842 50.000 1.02 0.00 0.00 3.02
16 17 2.143122 CCTAGCTGCAAACTTCGTTCA 58.857 47.619 1.02 0.00 0.00 3.18
17 18 1.135944 GCCTAGCTGCAAACTTCGTTC 60.136 52.381 1.02 0.00 0.00 3.95
18 19 0.875059 GCCTAGCTGCAAACTTCGTT 59.125 50.000 1.02 0.00 0.00 3.85
19 20 0.955919 GGCCTAGCTGCAAACTTCGT 60.956 55.000 1.02 0.00 0.00 3.85
20 21 0.955428 TGGCCTAGCTGCAAACTTCG 60.955 55.000 3.32 0.00 0.00 3.79
21 22 1.467920 ATGGCCTAGCTGCAAACTTC 58.532 50.000 3.32 0.00 0.00 3.01
22 23 1.821136 GAATGGCCTAGCTGCAAACTT 59.179 47.619 3.32 0.00 0.00 2.66
23 24 1.005215 AGAATGGCCTAGCTGCAAACT 59.995 47.619 3.32 0.00 0.00 2.66
24 25 1.467920 AGAATGGCCTAGCTGCAAAC 58.532 50.000 3.32 0.00 0.00 2.93
25 26 2.220653 AAGAATGGCCTAGCTGCAAA 57.779 45.000 3.32 0.00 0.00 3.68
26 27 1.820519 CAAAGAATGGCCTAGCTGCAA 59.179 47.619 3.32 0.00 0.00 4.08
27 28 1.466856 CAAAGAATGGCCTAGCTGCA 58.533 50.000 3.32 0.00 0.00 4.41
28 29 0.101939 GCAAAGAATGGCCTAGCTGC 59.898 55.000 3.32 1.58 0.00 5.25
29 30 1.466856 TGCAAAGAATGGCCTAGCTG 58.533 50.000 3.32 0.00 0.00 4.24
30 31 2.220653 TTGCAAAGAATGGCCTAGCT 57.779 45.000 3.32 0.00 0.00 3.32
43 44 6.959639 AAAAGTTACTCCTGATCTTGCAAA 57.040 33.333 0.00 0.00 0.00 3.68
44 45 6.321181 ACAAAAAGTTACTCCTGATCTTGCAA 59.679 34.615 0.00 0.00 0.00 4.08
45 46 5.827797 ACAAAAAGTTACTCCTGATCTTGCA 59.172 36.000 0.00 0.00 0.00 4.08
46 47 6.319141 ACAAAAAGTTACTCCTGATCTTGC 57.681 37.500 0.00 0.00 0.00 4.01
47 48 7.707104 ACAACAAAAAGTTACTCCTGATCTTG 58.293 34.615 0.00 0.00 38.74 3.02
48 49 7.881775 ACAACAAAAAGTTACTCCTGATCTT 57.118 32.000 0.00 0.00 38.74 2.40
49 50 8.974060 TTACAACAAAAAGTTACTCCTGATCT 57.026 30.769 0.00 0.00 38.74 2.75
50 51 9.612620 CATTACAACAAAAAGTTACTCCTGATC 57.387 33.333 0.00 0.00 38.74 2.92
51 52 9.349713 TCATTACAACAAAAAGTTACTCCTGAT 57.650 29.630 0.00 0.00 38.74 2.90
52 53 8.740123 TCATTACAACAAAAAGTTACTCCTGA 57.260 30.769 0.00 0.00 38.74 3.86
53 54 9.965824 AATCATTACAACAAAAAGTTACTCCTG 57.034 29.630 0.00 0.00 38.74 3.86
54 55 9.965824 CAATCATTACAACAAAAAGTTACTCCT 57.034 29.630 0.00 0.00 38.74 3.69
55 56 9.744468 ACAATCATTACAACAAAAAGTTACTCC 57.256 29.630 0.00 0.00 38.74 3.85
82 83 2.109128 TCACATGGGGCACTAGGAAAAA 59.891 45.455 0.00 0.00 0.00 1.94
83 84 1.707989 TCACATGGGGCACTAGGAAAA 59.292 47.619 0.00 0.00 0.00 2.29
84 85 1.004277 GTCACATGGGGCACTAGGAAA 59.996 52.381 0.00 0.00 0.00 3.13
85 86 0.618458 GTCACATGGGGCACTAGGAA 59.382 55.000 0.00 0.00 0.00 3.36
86 87 0.546507 TGTCACATGGGGCACTAGGA 60.547 55.000 0.00 0.00 0.00 2.94
87 88 0.327924 TTGTCACATGGGGCACTAGG 59.672 55.000 0.00 0.00 0.00 3.02
88 89 2.425143 ATTGTCACATGGGGCACTAG 57.575 50.000 0.00 0.00 0.00 2.57
89 90 3.201930 ACATATTGTCACATGGGGCACTA 59.798 43.478 0.00 0.63 0.00 2.74
90 91 2.025037 ACATATTGTCACATGGGGCACT 60.025 45.455 0.00 0.00 0.00 4.40
91 92 2.378038 ACATATTGTCACATGGGGCAC 58.622 47.619 0.00 0.00 0.00 5.01
92 93 2.824689 ACATATTGTCACATGGGGCA 57.175 45.000 0.00 0.00 0.00 5.36
93 94 4.470334 AAAACATATTGTCACATGGGGC 57.530 40.909 0.00 0.00 0.00 5.80
94 95 6.379703 TCCTTAAAACATATTGTCACATGGGG 59.620 38.462 0.00 0.00 0.00 4.96
95 96 7.403312 TCCTTAAAACATATTGTCACATGGG 57.597 36.000 0.00 0.00 0.00 4.00
96 97 9.874205 ATTTCCTTAAAACATATTGTCACATGG 57.126 29.630 0.00 0.00 0.00 3.66
108 109 9.981114 ATTCTCGTCAAAATTTCCTTAAAACAT 57.019 25.926 0.00 0.00 0.00 2.71
109 110 9.243637 CATTCTCGTCAAAATTTCCTTAAAACA 57.756 29.630 0.00 0.00 0.00 2.83
110 111 9.244799 ACATTCTCGTCAAAATTTCCTTAAAAC 57.755 29.630 0.00 0.00 0.00 2.43
111 112 9.458374 GACATTCTCGTCAAAATTTCCTTAAAA 57.542 29.630 0.00 0.00 35.88 1.52
112 113 8.079809 GGACATTCTCGTCAAAATTTCCTTAAA 58.920 33.333 0.00 0.00 37.66 1.52
113 114 7.572353 CGGACATTCTCGTCAAAATTTCCTTAA 60.572 37.037 0.00 0.00 37.66 1.85
114 115 6.128391 CGGACATTCTCGTCAAAATTTCCTTA 60.128 38.462 0.00 0.00 37.66 2.69
115 116 5.334879 CGGACATTCTCGTCAAAATTTCCTT 60.335 40.000 0.00 0.00 37.66 3.36
116 117 4.154195 CGGACATTCTCGTCAAAATTTCCT 59.846 41.667 0.00 0.00 37.66 3.36
117 118 4.083484 ACGGACATTCTCGTCAAAATTTCC 60.083 41.667 0.00 0.00 37.66 3.13
118 119 5.030874 ACGGACATTCTCGTCAAAATTTC 57.969 39.130 0.00 0.00 37.66 2.17
119 120 5.390567 GCTACGGACATTCTCGTCAAAATTT 60.391 40.000 0.00 0.00 40.31 1.82
120 121 4.092968 GCTACGGACATTCTCGTCAAAATT 59.907 41.667 0.00 0.00 40.31 1.82
121 122 3.617263 GCTACGGACATTCTCGTCAAAAT 59.383 43.478 0.00 0.00 40.31 1.82
122 123 2.991190 GCTACGGACATTCTCGTCAAAA 59.009 45.455 0.00 0.00 40.31 2.44
123 124 2.230508 AGCTACGGACATTCTCGTCAAA 59.769 45.455 0.00 0.00 40.31 2.69
124 125 1.816835 AGCTACGGACATTCTCGTCAA 59.183 47.619 0.00 0.00 40.31 3.18
125 126 1.460504 AGCTACGGACATTCTCGTCA 58.539 50.000 0.00 0.00 40.31 4.35
126 127 2.871022 TCTAGCTACGGACATTCTCGTC 59.129 50.000 0.00 0.00 40.31 4.20
127 128 2.915349 TCTAGCTACGGACATTCTCGT 58.085 47.619 0.00 0.00 42.55 4.18
128 129 4.436317 GCTATCTAGCTACGGACATTCTCG 60.436 50.000 1.92 0.00 45.62 4.04
129 130 4.976987 GCTATCTAGCTACGGACATTCTC 58.023 47.826 1.92 0.00 45.62 2.87
142 143 2.094078 CATGGCTCCTCAGCTATCTAGC 60.094 54.545 0.81 0.81 43.05 3.42
143 144 3.164268 ACATGGCTCCTCAGCTATCTAG 58.836 50.000 0.00 0.00 43.05 2.43
144 145 3.161067 GACATGGCTCCTCAGCTATCTA 58.839 50.000 0.00 0.00 43.05 1.98
145 146 1.969923 GACATGGCTCCTCAGCTATCT 59.030 52.381 0.00 0.00 43.05 1.98
146 147 1.690893 TGACATGGCTCCTCAGCTATC 59.309 52.381 0.00 0.00 43.05 2.08
148 149 1.571955 TTGACATGGCTCCTCAGCTA 58.428 50.000 0.00 0.00 46.03 3.32
149 150 0.694771 TTTGACATGGCTCCTCAGCT 59.305 50.000 0.00 0.00 46.03 4.24
150 151 1.760192 ATTTGACATGGCTCCTCAGC 58.240 50.000 0.00 0.00 46.06 4.26
151 152 4.774124 TCTTATTTGACATGGCTCCTCAG 58.226 43.478 0.00 0.00 0.00 3.35
152 153 4.842531 TCTTATTTGACATGGCTCCTCA 57.157 40.909 0.00 0.00 0.00 3.86
153 154 6.515272 TTTTCTTATTTGACATGGCTCCTC 57.485 37.500 0.00 0.00 0.00 3.71
154 155 6.916360 TTTTTCTTATTTGACATGGCTCCT 57.084 33.333 0.00 0.00 0.00 3.69
155 156 9.305925 CTAATTTTTCTTATTTGACATGGCTCC 57.694 33.333 0.00 0.00 0.00 4.70
158 159 9.305925 CCTCTAATTTTTCTTATTTGACATGGC 57.694 33.333 0.00 0.00 0.00 4.40
171 172 9.811995 GGTTTGTAACAAACCTCTAATTTTTCT 57.188 29.630 22.35 0.00 44.71 2.52
172 173 9.037737 GGGTTTGTAACAAACCTCTAATTTTTC 57.962 33.333 25.64 11.45 46.71 2.29
173 174 8.541234 TGGGTTTGTAACAAACCTCTAATTTTT 58.459 29.630 25.64 0.00 46.71 1.94
174 175 8.080363 TGGGTTTGTAACAAACCTCTAATTTT 57.920 30.769 25.64 0.00 46.71 1.82
175 176 7.663043 TGGGTTTGTAACAAACCTCTAATTT 57.337 32.000 25.64 0.00 46.71 1.82
176 177 7.562088 TCTTGGGTTTGTAACAAACCTCTAATT 59.438 33.333 25.64 0.00 46.71 1.40
177 178 7.064229 TCTTGGGTTTGTAACAAACCTCTAAT 58.936 34.615 25.64 0.00 46.71 1.73
178 179 6.424883 TCTTGGGTTTGTAACAAACCTCTAA 58.575 36.000 25.64 19.80 46.71 2.10
179 180 6.003859 TCTTGGGTTTGTAACAAACCTCTA 57.996 37.500 25.64 16.99 46.71 2.43
180 181 4.862371 TCTTGGGTTTGTAACAAACCTCT 58.138 39.130 25.64 0.00 46.71 3.69
181 182 5.585820 TTCTTGGGTTTGTAACAAACCTC 57.414 39.130 25.64 19.70 46.71 3.85
182 183 5.423931 ACATTCTTGGGTTTGTAACAAACCT 59.576 36.000 25.64 12.13 46.71 3.50
183 184 5.666462 ACATTCTTGGGTTTGTAACAAACC 58.334 37.500 21.89 21.89 46.78 3.27
184 185 7.259161 TGTACATTCTTGGGTTTGTAACAAAC 58.741 34.615 0.00 0.00 0.00 2.93
185 186 7.406031 TGTACATTCTTGGGTTTGTAACAAA 57.594 32.000 0.00 0.00 0.00 2.83
186 187 7.122948 ACTTGTACATTCTTGGGTTTGTAACAA 59.877 33.333 0.00 0.00 0.00 2.83
187 188 6.603997 ACTTGTACATTCTTGGGTTTGTAACA 59.396 34.615 0.00 0.00 0.00 2.41
188 189 7.034685 ACTTGTACATTCTTGGGTTTGTAAC 57.965 36.000 0.00 0.00 0.00 2.50
189 190 7.648039 AACTTGTACATTCTTGGGTTTGTAA 57.352 32.000 0.00 0.00 0.00 2.41
190 191 7.648039 AAACTTGTACATTCTTGGGTTTGTA 57.352 32.000 0.00 0.00 0.00 2.41
191 192 6.538945 AAACTTGTACATTCTTGGGTTTGT 57.461 33.333 0.00 0.00 0.00 2.83
192 193 6.238076 GCAAAACTTGTACATTCTTGGGTTTG 60.238 38.462 0.00 6.11 0.00 2.93
193 194 5.815222 GCAAAACTTGTACATTCTTGGGTTT 59.185 36.000 0.00 0.00 0.00 3.27
194 195 5.356426 GCAAAACTTGTACATTCTTGGGTT 58.644 37.500 0.00 0.00 0.00 4.11
195 196 4.202212 GGCAAAACTTGTACATTCTTGGGT 60.202 41.667 0.00 0.00 0.00 4.51
196 197 4.039124 AGGCAAAACTTGTACATTCTTGGG 59.961 41.667 0.00 0.00 0.00 4.12
197 198 5.200368 AGGCAAAACTTGTACATTCTTGG 57.800 39.130 0.00 0.00 0.00 3.61
198 199 7.492344 AGAAAAGGCAAAACTTGTACATTCTTG 59.508 33.333 0.00 0.00 0.00 3.02
199 200 7.555965 AGAAAAGGCAAAACTTGTACATTCTT 58.444 30.769 0.00 0.00 0.00 2.52
200 201 7.112452 AGAAAAGGCAAAACTTGTACATTCT 57.888 32.000 0.00 0.00 0.00 2.40
201 202 7.770801 AAGAAAAGGCAAAACTTGTACATTC 57.229 32.000 0.00 0.00 0.00 2.67
202 203 9.660180 TTAAAGAAAAGGCAAAACTTGTACATT 57.340 25.926 0.00 0.00 0.00 2.71
203 204 9.830975 ATTAAAGAAAAGGCAAAACTTGTACAT 57.169 25.926 0.00 0.00 0.00 2.29
204 205 9.092876 CATTAAAGAAAAGGCAAAACTTGTACA 57.907 29.630 0.00 0.00 0.00 2.90
205 206 9.308318 TCATTAAAGAAAAGGCAAAACTTGTAC 57.692 29.630 0.00 0.00 0.00 2.90
207 208 8.962884 ATCATTAAAGAAAAGGCAAAACTTGT 57.037 26.923 0.00 0.00 0.00 3.16
213 214 9.751542 TCGTAAAATCATTAAAGAAAAGGCAAA 57.248 25.926 0.00 0.00 0.00 3.68
214 215 9.921637 ATCGTAAAATCATTAAAGAAAAGGCAA 57.078 25.926 0.00 0.00 0.00 4.52
215 216 9.921637 AATCGTAAAATCATTAAAGAAAAGGCA 57.078 25.926 0.00 0.00 0.00 4.75
236 237 9.405587 CAACAAAGTCCATAATAAAACAATCGT 57.594 29.630 0.00 0.00 0.00 3.73
237 238 8.859156 CCAACAAAGTCCATAATAAAACAATCG 58.141 33.333 0.00 0.00 0.00 3.34
238 239 9.705290 ACCAACAAAGTCCATAATAAAACAATC 57.295 29.630 0.00 0.00 0.00 2.67
245 246 9.967451 TGAAGATACCAACAAAGTCCATAATAA 57.033 29.630 0.00 0.00 0.00 1.40
246 247 9.967451 TTGAAGATACCAACAAAGTCCATAATA 57.033 29.630 0.00 0.00 0.00 0.98
247 248 8.877864 TTGAAGATACCAACAAAGTCCATAAT 57.122 30.769 0.00 0.00 0.00 1.28
248 249 8.698973 TTTGAAGATACCAACAAAGTCCATAA 57.301 30.769 0.00 0.00 0.00 1.90
249 250 8.335532 CTTTGAAGATACCAACAAAGTCCATA 57.664 34.615 0.00 0.00 42.02 2.74
250 251 7.219484 CTTTGAAGATACCAACAAAGTCCAT 57.781 36.000 0.00 0.00 42.02 3.41
251 252 6.633500 CTTTGAAGATACCAACAAAGTCCA 57.367 37.500 0.00 0.00 42.02 4.02
256 257 7.639113 AACAGACTTTGAAGATACCAACAAA 57.361 32.000 0.00 0.00 0.00 2.83
257 258 7.639113 AAACAGACTTTGAAGATACCAACAA 57.361 32.000 0.00 0.00 0.00 2.83
258 259 8.918202 ATAAACAGACTTTGAAGATACCAACA 57.082 30.769 0.00 0.00 0.00 3.33
261 262 9.793259 AGAAATAAACAGACTTTGAAGATACCA 57.207 29.630 0.00 0.00 0.00 3.25
266 267 9.408648 AGGAAAGAAATAAACAGACTTTGAAGA 57.591 29.630 0.00 0.00 32.20 2.87
286 287 9.495572 GGTGTCTATTGGAGAATATAAGGAAAG 57.504 37.037 0.00 0.00 35.37 2.62
287 288 8.148351 CGGTGTCTATTGGAGAATATAAGGAAA 58.852 37.037 0.00 0.00 35.37 3.13
288 289 7.667557 CGGTGTCTATTGGAGAATATAAGGAA 58.332 38.462 0.00 0.00 35.37 3.36
289 290 6.295123 GCGGTGTCTATTGGAGAATATAAGGA 60.295 42.308 0.00 0.00 35.37 3.36
290 291 5.869888 GCGGTGTCTATTGGAGAATATAAGG 59.130 44.000 0.00 0.00 35.37 2.69
291 292 6.455647 TGCGGTGTCTATTGGAGAATATAAG 58.544 40.000 0.00 0.00 35.37 1.73
292 293 6.413783 TGCGGTGTCTATTGGAGAATATAA 57.586 37.500 0.00 0.00 35.37 0.98
293 294 5.047306 CCTGCGGTGTCTATTGGAGAATATA 60.047 44.000 0.00 0.00 35.37 0.86
294 295 4.262635 CCTGCGGTGTCTATTGGAGAATAT 60.263 45.833 0.00 0.00 35.37 1.28
295 296 3.069586 CCTGCGGTGTCTATTGGAGAATA 59.930 47.826 0.00 0.00 35.37 1.75
296 297 2.158900 CCTGCGGTGTCTATTGGAGAAT 60.159 50.000 0.00 0.00 35.37 2.40
297 298 1.207089 CCTGCGGTGTCTATTGGAGAA 59.793 52.381 0.00 0.00 35.37 2.87
298 299 0.824109 CCTGCGGTGTCTATTGGAGA 59.176 55.000 0.00 0.00 0.00 3.71
299 300 0.537188 ACCTGCGGTGTCTATTGGAG 59.463 55.000 0.00 0.00 32.98 3.86
300 301 2.678786 ACCTGCGGTGTCTATTGGA 58.321 52.632 0.00 0.00 32.98 3.53
315 316 4.100189 GAGCATATCTCAAGGTGTACACCT 59.900 45.833 36.92 36.92 46.93 4.00
316 317 4.100189 AGAGCATATCTCAAGGTGTACACC 59.900 45.833 33.72 33.72 46.71 4.16
317 318 5.269505 AGAGCATATCTCAAGGTGTACAC 57.730 43.478 18.01 18.01 44.35 2.90
318 319 5.187772 ACAAGAGCATATCTCAAGGTGTACA 59.812 40.000 0.00 0.00 44.35 2.90
319 320 5.521735 CACAAGAGCATATCTCAAGGTGTAC 59.478 44.000 0.00 0.00 44.35 2.90
320 321 5.664457 CACAAGAGCATATCTCAAGGTGTA 58.336 41.667 0.00 0.00 44.35 2.90
321 322 4.511527 CACAAGAGCATATCTCAAGGTGT 58.488 43.478 0.00 0.00 44.35 4.16
322 323 3.311871 GCACAAGAGCATATCTCAAGGTG 59.688 47.826 0.00 0.00 44.35 4.00
323 324 3.054875 TGCACAAGAGCATATCTCAAGGT 60.055 43.478 0.00 0.00 44.35 3.50
324 325 3.538591 TGCACAAGAGCATATCTCAAGG 58.461 45.455 0.00 0.00 44.35 3.61
341 342 1.805943 TGCAGATGTATGTGTGTGCAC 59.194 47.619 10.75 10.75 39.34 4.57
342 343 2.078392 CTGCAGATGTATGTGTGTGCA 58.922 47.619 8.42 0.00 41.55 4.57
343 344 1.202110 GCTGCAGATGTATGTGTGTGC 60.202 52.381 20.43 0.00 35.41 4.57
344 345 2.095372 CAGCTGCAGATGTATGTGTGTG 59.905 50.000 23.67 0.00 0.00 3.82
345 346 2.353323 CAGCTGCAGATGTATGTGTGT 58.647 47.619 23.67 0.00 0.00 3.72
346 347 1.063616 GCAGCTGCAGATGTATGTGTG 59.936 52.381 33.36 5.57 41.59 3.82
347 348 1.065636 AGCAGCTGCAGATGTATGTGT 60.066 47.619 38.24 12.19 45.16 3.72
348 349 1.664873 AGCAGCTGCAGATGTATGTG 58.335 50.000 38.24 7.10 45.16 3.21
349 350 2.414994 AAGCAGCTGCAGATGTATGT 57.585 45.000 38.24 13.55 45.16 2.29
350 351 2.681344 TCAAAGCAGCTGCAGATGTATG 59.319 45.455 38.24 24.82 45.16 2.39
351 352 2.943690 CTCAAAGCAGCTGCAGATGTAT 59.056 45.455 38.24 18.43 45.16 2.29
352 353 2.027837 TCTCAAAGCAGCTGCAGATGTA 60.028 45.455 38.24 21.37 45.16 2.29
353 354 1.166129 CTCAAAGCAGCTGCAGATGT 58.834 50.000 38.24 16.73 45.16 3.06
354 355 1.450025 TCTCAAAGCAGCTGCAGATG 58.550 50.000 38.24 30.26 45.16 2.90
355 356 2.017782 CATCTCAAAGCAGCTGCAGAT 58.982 47.619 38.24 31.17 45.16 2.90
356 357 1.271217 ACATCTCAAAGCAGCTGCAGA 60.271 47.619 38.24 30.46 45.16 4.26
357 358 1.135660 CACATCTCAAAGCAGCTGCAG 60.136 52.381 38.24 26.56 45.16 4.41
358 359 0.879090 CACATCTCAAAGCAGCTGCA 59.121 50.000 38.24 18.87 45.16 4.41
359 360 0.456312 GCACATCTCAAAGCAGCTGC 60.456 55.000 31.53 31.53 42.49 5.25
360 361 0.879090 TGCACATCTCAAAGCAGCTG 59.121 50.000 10.11 10.11 32.48 4.24
361 362 1.166129 CTGCACATCTCAAAGCAGCT 58.834 50.000 0.00 0.00 46.51 4.24
362 363 3.696782 CTGCACATCTCAAAGCAGC 57.303 52.632 0.00 0.00 46.51 5.25
364 365 5.005740 ACTTTATCTGCACATCTCAAAGCA 58.994 37.500 0.00 0.00 35.43 3.91
365 366 5.557891 ACTTTATCTGCACATCTCAAAGC 57.442 39.130 0.00 0.00 0.00 3.51
366 367 5.349817 ACGACTTTATCTGCACATCTCAAAG 59.650 40.000 0.00 0.00 0.00 2.77
367 368 5.120674 CACGACTTTATCTGCACATCTCAAA 59.879 40.000 0.00 0.00 0.00 2.69
368 369 4.627035 CACGACTTTATCTGCACATCTCAA 59.373 41.667 0.00 0.00 0.00 3.02
369 370 4.176271 CACGACTTTATCTGCACATCTCA 58.824 43.478 0.00 0.00 0.00 3.27
370 371 4.177026 ACACGACTTTATCTGCACATCTC 58.823 43.478 0.00 0.00 0.00 2.75
371 372 4.193826 ACACGACTTTATCTGCACATCT 57.806 40.909 0.00 0.00 0.00 2.90
372 373 4.928661 AACACGACTTTATCTGCACATC 57.071 40.909 0.00 0.00 0.00 3.06
373 374 5.689383 AAAACACGACTTTATCTGCACAT 57.311 34.783 0.00 0.00 0.00 3.21
374 375 5.493133 AAAAACACGACTTTATCTGCACA 57.507 34.783 0.00 0.00 0.00 4.57
375 376 9.262472 CTAATAAAAACACGACTTTATCTGCAC 57.738 33.333 0.00 0.00 29.50 4.57
376 377 8.995220 ACTAATAAAAACACGACTTTATCTGCA 58.005 29.630 0.00 0.00 29.50 4.41
377 378 9.821662 AACTAATAAAAACACGACTTTATCTGC 57.178 29.630 0.00 0.00 29.50 4.26
384 385 9.874215 GCTCTTTAACTAATAAAAACACGACTT 57.126 29.630 0.00 0.00 33.20 3.01
385 386 9.269453 AGCTCTTTAACTAATAAAAACACGACT 57.731 29.630 0.00 0.00 33.20 4.18
386 387 9.874215 AAGCTCTTTAACTAATAAAAACACGAC 57.126 29.630 0.00 0.00 33.20 4.34
416 417 9.237187 TCCTTGTATGCTGATTTATGTAAACAA 57.763 29.630 0.00 0.00 0.00 2.83
417 418 8.800370 TCCTTGTATGCTGATTTATGTAAACA 57.200 30.769 0.00 0.00 0.00 2.83
422 423 8.559536 CGTATTTCCTTGTATGCTGATTTATGT 58.440 33.333 0.00 0.00 0.00 2.29
423 424 8.017373 CCGTATTTCCTTGTATGCTGATTTATG 58.983 37.037 0.00 0.00 0.00 1.90
424 425 7.719633 ACCGTATTTCCTTGTATGCTGATTTAT 59.280 33.333 0.00 0.00 0.00 1.40
425 426 7.051623 ACCGTATTTCCTTGTATGCTGATTTA 58.948 34.615 0.00 0.00 0.00 1.40
426 427 5.885912 ACCGTATTTCCTTGTATGCTGATTT 59.114 36.000 0.00 0.00 0.00 2.17
427 428 5.437060 ACCGTATTTCCTTGTATGCTGATT 58.563 37.500 0.00 0.00 0.00 2.57
428 429 5.036117 ACCGTATTTCCTTGTATGCTGAT 57.964 39.130 0.00 0.00 0.00 2.90
429 430 4.481368 ACCGTATTTCCTTGTATGCTGA 57.519 40.909 0.00 0.00 0.00 4.26
430 431 5.989168 TGATACCGTATTTCCTTGTATGCTG 59.011 40.000 0.00 0.00 0.00 4.41
431 432 6.169557 TGATACCGTATTTCCTTGTATGCT 57.830 37.500 0.00 0.00 0.00 3.79
432 433 5.989777 ACTGATACCGTATTTCCTTGTATGC 59.010 40.000 0.00 0.00 0.00 3.14
433 434 7.709182 TGAACTGATACCGTATTTCCTTGTATG 59.291 37.037 0.00 0.00 0.00 2.39
434 435 7.788026 TGAACTGATACCGTATTTCCTTGTAT 58.212 34.615 0.00 0.00 0.00 2.29
435 436 7.172868 TGAACTGATACCGTATTTCCTTGTA 57.827 36.000 0.00 0.00 0.00 2.41
436 437 6.045072 TGAACTGATACCGTATTTCCTTGT 57.955 37.500 0.00 0.00 0.00 3.16
437 438 5.523916 CCTGAACTGATACCGTATTTCCTTG 59.476 44.000 0.00 0.00 0.00 3.61
438 439 5.671493 CCTGAACTGATACCGTATTTCCTT 58.329 41.667 0.00 0.00 0.00 3.36
439 440 4.443034 GCCTGAACTGATACCGTATTTCCT 60.443 45.833 0.00 0.00 0.00 3.36
440 441 3.808174 GCCTGAACTGATACCGTATTTCC 59.192 47.826 0.00 0.00 0.00 3.13
441 442 4.439057 TGCCTGAACTGATACCGTATTTC 58.561 43.478 0.00 0.00 0.00 2.17
442 443 4.481368 TGCCTGAACTGATACCGTATTT 57.519 40.909 0.00 0.00 0.00 1.40
443 444 4.081087 ACTTGCCTGAACTGATACCGTATT 60.081 41.667 0.00 0.00 0.00 1.89
444 445 3.451178 ACTTGCCTGAACTGATACCGTAT 59.549 43.478 0.00 0.00 0.00 3.06
445 446 2.829720 ACTTGCCTGAACTGATACCGTA 59.170 45.455 0.00 0.00 0.00 4.02
446 447 1.623811 ACTTGCCTGAACTGATACCGT 59.376 47.619 0.00 0.00 0.00 4.83
447 448 2.386661 ACTTGCCTGAACTGATACCG 57.613 50.000 0.00 0.00 0.00 4.02
448 449 4.202245 TGTACTTGCCTGAACTGATACC 57.798 45.455 0.00 0.00 0.00 2.73
449 450 5.005779 CGAATGTACTTGCCTGAACTGATAC 59.994 44.000 0.00 0.00 0.00 2.24
450 451 5.109210 CGAATGTACTTGCCTGAACTGATA 58.891 41.667 0.00 0.00 0.00 2.15
451 452 3.935203 CGAATGTACTTGCCTGAACTGAT 59.065 43.478 0.00 0.00 0.00 2.90
452 453 3.325870 CGAATGTACTTGCCTGAACTGA 58.674 45.455 0.00 0.00 0.00 3.41
453 454 2.159653 GCGAATGTACTTGCCTGAACTG 60.160 50.000 0.00 0.00 0.00 3.16
454 455 2.076863 GCGAATGTACTTGCCTGAACT 58.923 47.619 0.00 0.00 0.00 3.01
455 456 1.804151 TGCGAATGTACTTGCCTGAAC 59.196 47.619 0.00 0.00 0.00 3.18
456 457 2.076100 CTGCGAATGTACTTGCCTGAA 58.924 47.619 0.00 0.00 0.00 3.02
457 458 1.725641 CTGCGAATGTACTTGCCTGA 58.274 50.000 0.00 0.00 0.00 3.86
458 459 0.097674 GCTGCGAATGTACTTGCCTG 59.902 55.000 0.00 0.00 0.00 4.85
459 460 1.026718 GGCTGCGAATGTACTTGCCT 61.027 55.000 0.00 0.00 36.32 4.75
460 461 1.305219 TGGCTGCGAATGTACTTGCC 61.305 55.000 0.00 0.00 39.33 4.52
461 462 0.521291 TTGGCTGCGAATGTACTTGC 59.479 50.000 0.00 0.00 0.00 4.01
462 463 2.419673 TCATTGGCTGCGAATGTACTTG 59.580 45.455 28.43 11.05 32.71 3.16
463 464 2.710377 TCATTGGCTGCGAATGTACTT 58.290 42.857 28.43 0.00 32.71 2.24
464 465 2.401583 TCATTGGCTGCGAATGTACT 57.598 45.000 28.43 0.00 32.71 2.73
465 466 3.485947 TTTCATTGGCTGCGAATGTAC 57.514 42.857 28.43 0.53 32.71 2.90
466 467 3.755905 TCTTTTCATTGGCTGCGAATGTA 59.244 39.130 28.43 20.50 32.71 2.29
467 468 2.557924 TCTTTTCATTGGCTGCGAATGT 59.442 40.909 28.43 1.34 32.71 2.71
468 469 3.220507 TCTTTTCATTGGCTGCGAATG 57.779 42.857 25.49 25.49 32.26 2.67
469 470 3.777478 CATCTTTTCATTGGCTGCGAAT 58.223 40.909 3.91 3.91 0.00 3.34
470 471 2.671914 GCATCTTTTCATTGGCTGCGAA 60.672 45.455 0.00 0.00 0.00 4.70
471 472 1.135315 GCATCTTTTCATTGGCTGCGA 60.135 47.619 0.00 0.00 0.00 5.10
472 473 1.274596 GCATCTTTTCATTGGCTGCG 58.725 50.000 0.00 0.00 0.00 5.18
473 474 1.997606 GTGCATCTTTTCATTGGCTGC 59.002 47.619 0.00 0.00 0.00 5.25
474 475 3.306917 TGTGCATCTTTTCATTGGCTG 57.693 42.857 0.00 0.00 0.00 4.85
475 476 4.546829 AATGTGCATCTTTTCATTGGCT 57.453 36.364 0.00 0.00 0.00 4.75
476 477 4.567959 GGTAATGTGCATCTTTTCATTGGC 59.432 41.667 7.92 2.36 33.48 4.52
477 478 5.969423 AGGTAATGTGCATCTTTTCATTGG 58.031 37.500 7.92 0.00 33.48 3.16
478 479 6.038356 GGAGGTAATGTGCATCTTTTCATTG 58.962 40.000 7.92 0.00 33.48 2.82
479 480 5.716228 TGGAGGTAATGTGCATCTTTTCATT 59.284 36.000 0.00 0.00 35.24 2.57
480 481 5.263599 TGGAGGTAATGTGCATCTTTTCAT 58.736 37.500 0.00 0.00 0.00 2.57
481 482 4.661222 TGGAGGTAATGTGCATCTTTTCA 58.339 39.130 0.00 0.00 0.00 2.69
482 483 5.825507 GATGGAGGTAATGTGCATCTTTTC 58.174 41.667 0.00 0.00 39.12 2.29
483 484 5.841957 GATGGAGGTAATGTGCATCTTTT 57.158 39.130 0.00 0.00 39.12 2.27
487 488 5.698545 GTCTAAGATGGAGGTAATGTGCATC 59.301 44.000 0.00 0.00 41.68 3.91
488 489 5.615289 GTCTAAGATGGAGGTAATGTGCAT 58.385 41.667 0.00 0.00 0.00 3.96
489 490 4.441495 CGTCTAAGATGGAGGTAATGTGCA 60.441 45.833 0.00 0.00 0.00 4.57
490 491 4.051922 CGTCTAAGATGGAGGTAATGTGC 58.948 47.826 0.00 0.00 0.00 4.57
491 492 4.051922 GCGTCTAAGATGGAGGTAATGTG 58.948 47.826 0.00 0.00 0.00 3.21
492 493 3.243434 CGCGTCTAAGATGGAGGTAATGT 60.243 47.826 0.00 0.00 0.00 2.71
493 494 3.309388 CGCGTCTAAGATGGAGGTAATG 58.691 50.000 0.00 0.00 0.00 1.90
494 495 2.288273 GCGCGTCTAAGATGGAGGTAAT 60.288 50.000 8.43 0.00 0.00 1.89
495 496 1.066605 GCGCGTCTAAGATGGAGGTAA 59.933 52.381 8.43 0.00 0.00 2.85
496 497 0.666913 GCGCGTCTAAGATGGAGGTA 59.333 55.000 8.43 0.00 0.00 3.08
497 498 1.437986 GCGCGTCTAAGATGGAGGT 59.562 57.895 8.43 0.00 0.00 3.85
498 499 1.300233 GGCGCGTCTAAGATGGAGG 60.300 63.158 8.43 0.00 0.00 4.30
499 500 0.032678 ATGGCGCGTCTAAGATGGAG 59.967 55.000 13.81 0.00 0.00 3.86
500 501 0.464036 AATGGCGCGTCTAAGATGGA 59.536 50.000 13.81 0.00 0.00 3.41
501 502 1.299541 AAATGGCGCGTCTAAGATGG 58.700 50.000 13.81 0.00 0.00 3.51
502 503 4.211164 TCATTAAATGGCGCGTCTAAGATG 59.789 41.667 13.81 10.00 0.00 2.90
503 504 4.377021 TCATTAAATGGCGCGTCTAAGAT 58.623 39.130 13.81 0.00 0.00 2.40
504 505 3.787785 TCATTAAATGGCGCGTCTAAGA 58.212 40.909 13.81 0.00 0.00 2.10
505 506 3.604772 GCTCATTAAATGGCGCGTCTAAG 60.605 47.826 13.81 0.00 0.00 2.18
506 507 2.286833 GCTCATTAAATGGCGCGTCTAA 59.713 45.455 13.81 2.26 0.00 2.10
507 508 1.864711 GCTCATTAAATGGCGCGTCTA 59.135 47.619 13.81 0.00 0.00 2.59
508 509 0.657840 GCTCATTAAATGGCGCGTCT 59.342 50.000 13.81 0.00 0.00 4.18
509 510 0.317020 GGCTCATTAAATGGCGCGTC 60.317 55.000 2.29 2.29 0.00 5.19
510 511 1.029408 TGGCTCATTAAATGGCGCGT 61.029 50.000 8.43 0.00 0.00 6.01
511 512 0.317269 CTGGCTCATTAAATGGCGCG 60.317 55.000 0.00 0.00 0.00 6.86
512 513 0.740737 ACTGGCTCATTAAATGGCGC 59.259 50.000 0.00 0.00 0.00 6.53
513 514 3.508744 AAACTGGCTCATTAAATGGCG 57.491 42.857 0.00 0.00 0.00 5.69
514 515 4.389687 CACAAAACTGGCTCATTAAATGGC 59.610 41.667 0.00 0.00 0.00 4.40
515 516 4.931002 CCACAAAACTGGCTCATTAAATGG 59.069 41.667 0.00 0.00 0.00 3.16
527 528 0.461135 AGTTGCTGCCACAAAACTGG 59.539 50.000 6.63 0.00 31.82 4.00
528 529 1.563111 CAGTTGCTGCCACAAAACTG 58.437 50.000 13.20 13.20 42.37 3.16
540 541 0.039798 CGTTCATGCTTGCAGTTGCT 60.040 50.000 5.62 0.00 42.66 3.91
566 567 3.055094 ACACGGCTCACTTTATCTGGATT 60.055 43.478 0.00 0.00 0.00 3.01
574 575 1.403647 CGATCCACACGGCTCACTTTA 60.404 52.381 0.00 0.00 0.00 1.85
583 584 2.030457 GCATTCTTTACGATCCACACGG 59.970 50.000 0.00 0.00 34.93 4.94
621 622 0.319297 AACGCGTGGAGTAGGAACAC 60.319 55.000 14.98 0.00 0.00 3.32
661 662 9.811995 TGGTGGCGCTATATTATTTATTAGTAG 57.188 33.333 7.64 0.00 0.00 2.57
662 663 9.590451 GTGGTGGCGCTATATTATTTATTAGTA 57.410 33.333 7.64 0.00 0.00 1.82
663 664 8.098286 TGTGGTGGCGCTATATTATTTATTAGT 58.902 33.333 7.64 0.00 0.00 2.24
664 665 8.388103 GTGTGGTGGCGCTATATTATTTATTAG 58.612 37.037 7.64 0.00 0.00 1.73
665 666 8.098286 AGTGTGGTGGCGCTATATTATTTATTA 58.902 33.333 7.64 0.00 0.00 0.98
666 667 6.940298 AGTGTGGTGGCGCTATATTATTTATT 59.060 34.615 7.64 0.00 0.00 1.40
667 668 6.472887 AGTGTGGTGGCGCTATATTATTTAT 58.527 36.000 7.64 0.00 0.00 1.40
668 669 5.860611 AGTGTGGTGGCGCTATATTATTTA 58.139 37.500 7.64 0.00 0.00 1.40
671 672 3.614150 CGAGTGTGGTGGCGCTATATTAT 60.614 47.826 7.64 0.00 0.00 1.28
682 683 2.357517 GTCAGGCGAGTGTGGTGG 60.358 66.667 0.00 0.00 0.00 4.61
685 686 1.227823 TTTGGTCAGGCGAGTGTGG 60.228 57.895 0.00 0.00 0.00 4.17
806 825 1.450312 GCTGCTCCGCTACCAACAT 60.450 57.895 0.00 0.00 0.00 2.71
809 828 2.265739 CAGCTGCTCCGCTACCAA 59.734 61.111 0.00 0.00 38.41 3.67
810 829 3.774528 CCAGCTGCTCCGCTACCA 61.775 66.667 8.66 0.00 38.41 3.25
836 857 3.130516 GGTGTGAACCTGATCTATCGACA 59.869 47.826 0.00 0.00 0.00 4.35
948 970 0.391793 GTCTTTTGGCCGAGGAGGAG 60.392 60.000 0.00 0.00 45.00 3.69
949 971 1.125093 TGTCTTTTGGCCGAGGAGGA 61.125 55.000 0.00 0.00 45.00 3.71
950 972 0.035056 ATGTCTTTTGGCCGAGGAGG 60.035 55.000 0.00 0.00 44.97 4.30
953 975 1.089920 CTGATGTCTTTTGGCCGAGG 58.910 55.000 0.00 0.00 0.00 4.63
955 977 0.960364 GGCTGATGTCTTTTGGCCGA 60.960 55.000 0.00 0.00 0.00 5.54
956 978 1.243342 TGGCTGATGTCTTTTGGCCG 61.243 55.000 0.00 0.00 42.11 6.13
957 979 0.244721 GTGGCTGATGTCTTTTGGCC 59.755 55.000 0.00 0.00 39.93 5.36
958 980 0.961019 TGTGGCTGATGTCTTTTGGC 59.039 50.000 0.00 0.00 0.00 4.52
960 982 3.607775 CGAAGTGTGGCTGATGTCTTTTG 60.608 47.826 0.00 0.00 0.00 2.44
961 983 2.549754 CGAAGTGTGGCTGATGTCTTTT 59.450 45.455 0.00 0.00 0.00 2.27
1145 1175 4.680237 CCTTGTCGACGCTGGCCA 62.680 66.667 11.62 4.71 0.00 5.36
1359 1392 3.934391 GAACTCCGGCTGGTGGTCG 62.934 68.421 15.63 1.57 43.42 4.79
1424 1457 3.019545 CGCGCTCTTCGATCGTCC 61.020 66.667 15.94 0.00 41.67 4.79
1481 1514 1.704582 GCAGTTGCACGAGTCGATC 59.295 57.895 21.50 10.53 41.59 3.69
1531 1565 6.716628 AGAAAAAGTCTCTAATCACATGCCAA 59.283 34.615 0.00 0.00 0.00 4.52
1718 1756 4.991687 GGTCCTATTCTGCAATGTAGTAGC 59.008 45.833 0.00 0.00 0.00 3.58
1721 1759 3.136626 GGGGTCCTATTCTGCAATGTAGT 59.863 47.826 0.00 0.00 0.00 2.73
1726 1764 1.417890 CGAGGGGTCCTATTCTGCAAT 59.582 52.381 0.00 0.00 31.76 3.56
1729 1767 1.069935 GCGAGGGGTCCTATTCTGC 59.930 63.158 0.00 0.00 31.76 4.26
1844 1883 1.228063 GCTCCCCATCATCGTGCAT 60.228 57.895 0.00 0.00 0.00 3.96
2022 2061 3.993081 CTCATCCCTCGACTTATTCATGC 59.007 47.826 0.00 0.00 0.00 4.06
2058 2097 8.537223 CAATTTCTTCAACAGTTCTTTGTGATG 58.463 33.333 0.00 0.00 0.00 3.07
2065 2104 8.072567 CGATTCTCAATTTCTTCAACAGTTCTT 58.927 33.333 0.00 0.00 0.00 2.52
2066 2105 7.442364 TCGATTCTCAATTTCTTCAACAGTTCT 59.558 33.333 0.00 0.00 0.00 3.01
2067 2106 7.532209 GTCGATTCTCAATTTCTTCAACAGTTC 59.468 37.037 0.00 0.00 0.00 3.01
2071 2136 6.859420 TGTCGATTCTCAATTTCTTCAACA 57.141 33.333 0.00 0.00 0.00 3.33
2084 2149 6.721571 TTCAGTGGTAAATTGTCGATTCTC 57.278 37.500 0.00 0.00 0.00 2.87
2092 2157 5.873164 GGTCGTCTATTCAGTGGTAAATTGT 59.127 40.000 0.00 0.00 0.00 2.71
2125 2190 4.707448 ACCATGTGTCAACAAAACTAACCA 59.293 37.500 0.00 0.00 40.46 3.67
2221 2290 3.371285 GCTTCGTTCCATTGAGTTCTACC 59.629 47.826 0.00 0.00 0.00 3.18
2231 2300 3.609853 TCTGCTATTGCTTCGTTCCATT 58.390 40.909 0.00 0.00 40.48 3.16
2253 2322 3.445450 TCAGTGTTAGCAAAAGTGGCAAA 59.555 39.130 0.00 0.00 0.00 3.68
2257 2326 4.756642 TCATCTCAGTGTTAGCAAAAGTGG 59.243 41.667 0.00 0.00 0.00 4.00
2258 2327 5.237127 TGTCATCTCAGTGTTAGCAAAAGTG 59.763 40.000 0.00 0.00 0.00 3.16
2313 2382 2.412065 GCAAAACGCTTCACTCAGCTAG 60.412 50.000 0.00 0.00 37.68 3.42
2451 2523 4.080919 TCTGCACAACACTCTGCCTTATAT 60.081 41.667 0.00 0.00 31.97 0.86
2456 2528 0.533755 GTCTGCACAACACTCTGCCT 60.534 55.000 0.00 0.00 31.97 4.75
2457 2529 0.815213 TGTCTGCACAACACTCTGCC 60.815 55.000 0.00 0.00 31.97 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.