Multiple sequence alignment - TraesCS2A01G094300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G094300 chr2A 100.000 3170 0 0 1 3170 48198274 48201443 0.000000e+00 5854
1 TraesCS2A01G094300 chr2A 96.396 999 25 8 2176 3170 738286498 738285507 0.000000e+00 1635
2 TraesCS2A01G094300 chr6A 98.757 1287 14 2 877 2162 511532056 511533341 0.000000e+00 2287
3 TraesCS2A01G094300 chr6A 95.912 1003 33 8 2172 3170 549633555 549634553 0.000000e+00 1618
4 TraesCS2A01G094300 chr6A 95.908 1002 29 9 2172 3170 116980283 116981275 0.000000e+00 1613
5 TraesCS2A01G094300 chr5B 92.758 1298 92 2 877 2173 281238664 281239960 0.000000e+00 1875
6 TraesCS2A01G094300 chr2B 91.365 1297 107 4 877 2172 751298120 751296828 0.000000e+00 1770
7 TraesCS2A01G094300 chr2B 89.243 1162 124 1 1001 2162 115909506 115908346 0.000000e+00 1452
8 TraesCS2A01G094300 chr2B 92.417 633 34 7 35 662 70796370 70796993 0.000000e+00 891
9 TraesCS2A01G094300 chr2B 92.935 184 11 2 480 662 70854835 70855017 1.870000e-67 267
10 TraesCS2A01G094300 chr6B 90.439 1297 123 1 876 2172 478890194 478888899 0.000000e+00 1707
11 TraesCS2A01G094300 chr6B 85.054 1298 190 4 877 2172 623435371 623436666 0.000000e+00 1319
12 TraesCS2A01G094300 chr7B 89.915 1299 120 9 877 2172 74322790 74321500 0.000000e+00 1663
13 TraesCS2A01G094300 chr1A 96.112 1003 33 6 2172 3170 415628553 415627553 0.000000e+00 1631
14 TraesCS2A01G094300 chr1A 95.808 1002 35 7 2172 3170 495681622 495680625 0.000000e+00 1611
15 TraesCS2A01G094300 chr7A 95.924 1006 30 9 2172 3170 26071001 26072002 0.000000e+00 1620
16 TraesCS2A01G094300 chr5A 95.916 1004 32 9 2171 3170 326100765 326099767 0.000000e+00 1618
17 TraesCS2A01G094300 chr4A 95.912 1003 32 8 2172 3170 584908537 584907540 0.000000e+00 1616
18 TraesCS2A01G094300 chr4A 95.904 1001 34 6 2172 3170 13813577 13812582 0.000000e+00 1615
19 TraesCS2A01G094300 chr4A 97.511 924 23 0 874 1797 493982309 493983232 0.000000e+00 1580
20 TraesCS2A01G094300 chr1D 86.605 1299 169 5 877 2172 442404185 442402889 0.000000e+00 1430
21 TraesCS2A01G094300 chr2D 92.262 672 25 7 1 662 44334422 44335076 0.000000e+00 928
22 TraesCS2A01G094300 chr2D 93.371 528 29 3 37 559 44365674 44366200 0.000000e+00 776
23 TraesCS2A01G094300 chr2D 80.909 220 11 14 589 801 44367036 44367231 9.160000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G094300 chr2A 48198274 48201443 3169 False 5854.0 5854 100.000 1 3170 1 chr2A.!!$F1 3169
1 TraesCS2A01G094300 chr2A 738285507 738286498 991 True 1635.0 1635 96.396 2176 3170 1 chr2A.!!$R1 994
2 TraesCS2A01G094300 chr6A 511532056 511533341 1285 False 2287.0 2287 98.757 877 2162 1 chr6A.!!$F2 1285
3 TraesCS2A01G094300 chr6A 549633555 549634553 998 False 1618.0 1618 95.912 2172 3170 1 chr6A.!!$F3 998
4 TraesCS2A01G094300 chr6A 116980283 116981275 992 False 1613.0 1613 95.908 2172 3170 1 chr6A.!!$F1 998
5 TraesCS2A01G094300 chr5B 281238664 281239960 1296 False 1875.0 1875 92.758 877 2173 1 chr5B.!!$F1 1296
6 TraesCS2A01G094300 chr2B 751296828 751298120 1292 True 1770.0 1770 91.365 877 2172 1 chr2B.!!$R2 1295
7 TraesCS2A01G094300 chr2B 115908346 115909506 1160 True 1452.0 1452 89.243 1001 2162 1 chr2B.!!$R1 1161
8 TraesCS2A01G094300 chr2B 70796370 70796993 623 False 891.0 891 92.417 35 662 1 chr2B.!!$F1 627
9 TraesCS2A01G094300 chr6B 478888899 478890194 1295 True 1707.0 1707 90.439 876 2172 1 chr6B.!!$R1 1296
10 TraesCS2A01G094300 chr6B 623435371 623436666 1295 False 1319.0 1319 85.054 877 2172 1 chr6B.!!$F1 1295
11 TraesCS2A01G094300 chr7B 74321500 74322790 1290 True 1663.0 1663 89.915 877 2172 1 chr7B.!!$R1 1295
12 TraesCS2A01G094300 chr1A 415627553 415628553 1000 True 1631.0 1631 96.112 2172 3170 1 chr1A.!!$R1 998
13 TraesCS2A01G094300 chr1A 495680625 495681622 997 True 1611.0 1611 95.808 2172 3170 1 chr1A.!!$R2 998
14 TraesCS2A01G094300 chr7A 26071001 26072002 1001 False 1620.0 1620 95.924 2172 3170 1 chr7A.!!$F1 998
15 TraesCS2A01G094300 chr5A 326099767 326100765 998 True 1618.0 1618 95.916 2171 3170 1 chr5A.!!$R1 999
16 TraesCS2A01G094300 chr4A 584907540 584908537 997 True 1616.0 1616 95.912 2172 3170 1 chr4A.!!$R2 998
17 TraesCS2A01G094300 chr4A 13812582 13813577 995 True 1615.0 1615 95.904 2172 3170 1 chr4A.!!$R1 998
18 TraesCS2A01G094300 chr4A 493982309 493983232 923 False 1580.0 1580 97.511 874 1797 1 chr4A.!!$F1 923
19 TraesCS2A01G094300 chr1D 442402889 442404185 1296 True 1430.0 1430 86.605 877 2172 1 chr1D.!!$R1 1295
20 TraesCS2A01G094300 chr2D 44334422 44335076 654 False 928.0 928 92.262 1 662 1 chr2D.!!$F1 661
21 TraesCS2A01G094300 chr2D 44365674 44367231 1557 False 460.5 776 87.140 37 801 2 chr2D.!!$F2 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 420 0.800012 GCCCATTCGCGACTACAAAA 59.200 50.000 9.15 0.00 0.0 2.44 F
469 475 1.001181 TGATTGGCTTCTTTTGCTGGC 59.999 47.619 0.00 0.00 0.0 4.85 F
764 775 1.271108 TGCATATTGTGGACACGTGGT 60.271 47.619 21.57 5.35 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 1905 0.984995 GTCCAAGGAAGCACTAGGGT 59.015 55.000 0.00 0.0 0.00 4.34 R
2162 2233 1.271934 CGTTCCCCAACATTCATTGCA 59.728 47.619 0.00 0.0 32.14 4.08 R
2732 2810 0.394352 ATGCGCCTAGGGTTTCAAGG 60.394 55.000 11.72 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 1.729484 CTCGCGCTGTTCGTCAAGA 60.729 57.895 5.56 0.00 41.07 3.02
414 420 0.800012 GCCCATTCGCGACTACAAAA 59.200 50.000 9.15 0.00 0.00 2.44
450 456 1.147824 ATGAAGCCCAGCGATCCTG 59.852 57.895 4.67 4.67 41.41 3.86
462 468 2.019984 GCGATCCTGATTGGCTTCTTT 58.980 47.619 0.00 0.00 35.26 2.52
469 475 1.001181 TGATTGGCTTCTTTTGCTGGC 59.999 47.619 0.00 0.00 0.00 4.85
609 620 7.034685 ACGTAGTATGTGTATGACTTGCATA 57.965 36.000 0.00 0.00 41.94 3.14
619 630 7.992608 TGTGTATGACTTGCATATATTTGGACT 59.007 33.333 0.00 0.00 41.29 3.85
620 631 8.840321 GTGTATGACTTGCATATATTTGGACTT 58.160 33.333 0.00 0.00 41.29 3.01
621 632 9.056005 TGTATGACTTGCATATATTTGGACTTC 57.944 33.333 0.00 0.00 41.29 3.01
622 633 6.603237 TGACTTGCATATATTTGGACTTCG 57.397 37.500 0.00 0.00 0.00 3.79
623 634 6.345298 TGACTTGCATATATTTGGACTTCGA 58.655 36.000 0.00 0.00 0.00 3.71
624 635 6.257849 TGACTTGCATATATTTGGACTTCGAC 59.742 38.462 0.00 0.00 0.00 4.20
625 636 6.112734 ACTTGCATATATTTGGACTTCGACA 58.887 36.000 0.00 0.00 0.00 4.35
626 637 6.767902 ACTTGCATATATTTGGACTTCGACAT 59.232 34.615 0.00 0.00 0.00 3.06
627 638 6.544038 TGCATATATTTGGACTTCGACATG 57.456 37.500 0.00 0.00 0.00 3.21
628 639 6.054941 TGCATATATTTGGACTTCGACATGT 58.945 36.000 0.00 0.00 0.00 3.21
629 640 7.213678 TGCATATATTTGGACTTCGACATGTA 58.786 34.615 0.00 0.00 0.00 2.29
630 641 7.713073 TGCATATATTTGGACTTCGACATGTAA 59.287 33.333 0.00 0.00 0.00 2.41
631 642 8.721478 GCATATATTTGGACTTCGACATGTAAT 58.279 33.333 0.00 0.00 0.00 1.89
636 647 7.827819 TTTGGACTTCGACATGTAATTAGAG 57.172 36.000 0.00 0.00 0.00 2.43
637 648 6.769134 TGGACTTCGACATGTAATTAGAGA 57.231 37.500 0.00 0.00 0.00 3.10
638 649 6.796426 TGGACTTCGACATGTAATTAGAGAG 58.204 40.000 0.00 0.00 0.00 3.20
639 650 6.377429 TGGACTTCGACATGTAATTAGAGAGT 59.623 38.462 0.00 0.00 0.00 3.24
640 651 7.093902 TGGACTTCGACATGTAATTAGAGAGTT 60.094 37.037 0.00 0.00 0.00 3.01
641 652 8.404000 GGACTTCGACATGTAATTAGAGAGTTA 58.596 37.037 0.00 0.00 0.00 2.24
642 653 9.224058 GACTTCGACATGTAATTAGAGAGTTAC 57.776 37.037 0.00 0.00 0.00 2.50
643 654 8.737175 ACTTCGACATGTAATTAGAGAGTTACA 58.263 33.333 0.00 1.06 42.85 2.41
644 655 9.569167 CTTCGACATGTAATTAGAGAGTTACAA 57.431 33.333 0.00 0.00 42.21 2.41
645 656 9.569167 TTCGACATGTAATTAGAGAGTTACAAG 57.431 33.333 0.00 1.53 42.21 3.16
646 657 8.737175 TCGACATGTAATTAGAGAGTTACAAGT 58.263 33.333 0.00 6.01 42.16 3.16
647 658 8.799091 CGACATGTAATTAGAGAGTTACAAGTG 58.201 37.037 0.00 4.77 40.61 3.16
648 659 9.640963 GACATGTAATTAGAGAGTTACAAGTGT 57.359 33.333 0.00 7.29 40.61 3.55
649 660 9.998106 ACATGTAATTAGAGAGTTACAAGTGTT 57.002 29.630 0.00 0.00 42.21 3.32
654 665 7.659652 ATTAGAGAGTTACAAGTGTTTGAGC 57.340 36.000 0.00 0.00 37.73 4.26
655 666 5.283457 AGAGAGTTACAAGTGTTTGAGCT 57.717 39.130 0.00 0.00 37.73 4.09
656 667 5.053145 AGAGAGTTACAAGTGTTTGAGCTG 58.947 41.667 0.00 0.00 37.73 4.24
657 668 5.023533 AGAGTTACAAGTGTTTGAGCTGA 57.976 39.130 0.00 0.00 37.73 4.26
658 669 5.428253 AGAGTTACAAGTGTTTGAGCTGAA 58.572 37.500 0.00 0.00 37.73 3.02
659 670 5.294552 AGAGTTACAAGTGTTTGAGCTGAAC 59.705 40.000 0.00 0.00 37.73 3.18
660 671 4.941263 AGTTACAAGTGTTTGAGCTGAACA 59.059 37.500 7.90 7.90 37.73 3.18
668 679 5.422666 TGTTTGAGCTGAACACATGTAAG 57.577 39.130 0.00 0.00 32.44 2.34
669 680 4.881273 TGTTTGAGCTGAACACATGTAAGT 59.119 37.500 0.00 0.00 32.44 2.24
670 681 5.207768 GTTTGAGCTGAACACATGTAAGTG 58.792 41.667 0.00 0.00 44.93 3.16
680 691 4.875544 CACATGTAAGTGTAATTCCCGG 57.124 45.455 0.00 0.00 34.83 5.73
681 692 3.064820 CACATGTAAGTGTAATTCCCGGC 59.935 47.826 0.00 0.00 34.83 6.13
682 693 3.054655 ACATGTAAGTGTAATTCCCGGCT 60.055 43.478 0.00 0.00 0.00 5.52
683 694 3.706600 TGTAAGTGTAATTCCCGGCTT 57.293 42.857 0.00 0.00 0.00 4.35
684 695 4.822685 TGTAAGTGTAATTCCCGGCTTA 57.177 40.909 0.00 0.00 0.00 3.09
685 696 5.362105 TGTAAGTGTAATTCCCGGCTTAT 57.638 39.130 0.00 0.00 0.00 1.73
686 697 5.120399 TGTAAGTGTAATTCCCGGCTTATG 58.880 41.667 0.00 0.00 0.00 1.90
687 698 4.497291 AAGTGTAATTCCCGGCTTATGA 57.503 40.909 0.00 0.00 0.00 2.15
688 699 4.706842 AGTGTAATTCCCGGCTTATGAT 57.293 40.909 0.00 0.00 0.00 2.45
689 700 5.818678 AGTGTAATTCCCGGCTTATGATA 57.181 39.130 0.00 0.00 0.00 2.15
690 701 5.548406 AGTGTAATTCCCGGCTTATGATAC 58.452 41.667 0.00 0.00 0.00 2.24
691 702 5.307196 AGTGTAATTCCCGGCTTATGATACT 59.693 40.000 0.00 0.00 0.00 2.12
692 703 5.995897 GTGTAATTCCCGGCTTATGATACTT 59.004 40.000 0.00 0.00 0.00 2.24
693 704 7.015877 AGTGTAATTCCCGGCTTATGATACTTA 59.984 37.037 0.00 0.00 0.00 2.24
694 705 7.658575 GTGTAATTCCCGGCTTATGATACTTAA 59.341 37.037 0.00 0.00 0.00 1.85
695 706 8.212312 TGTAATTCCCGGCTTATGATACTTAAA 58.788 33.333 0.00 0.00 0.00 1.52
696 707 7.745620 AATTCCCGGCTTATGATACTTAAAG 57.254 36.000 0.00 0.00 0.00 1.85
697 708 5.223449 TCCCGGCTTATGATACTTAAAGG 57.777 43.478 0.00 0.00 0.00 3.11
698 709 3.751698 CCCGGCTTATGATACTTAAAGGC 59.248 47.826 0.00 0.00 40.15 4.35
699 710 4.505039 CCCGGCTTATGATACTTAAAGGCT 60.505 45.833 0.00 0.00 41.06 4.58
700 711 5.279809 CCCGGCTTATGATACTTAAAGGCTA 60.280 44.000 0.00 0.00 41.06 3.93
701 712 6.407202 CCGGCTTATGATACTTAAAGGCTAT 58.593 40.000 0.00 0.00 41.06 2.97
702 713 7.364408 CCCGGCTTATGATACTTAAAGGCTATA 60.364 40.741 0.00 0.00 41.06 1.31
703 714 8.204836 CCGGCTTATGATACTTAAAGGCTATAT 58.795 37.037 0.00 0.00 41.06 0.86
710 721 7.497595 TGATACTTAAAGGCTATATATGCGGG 58.502 38.462 0.00 0.00 0.00 6.13
711 722 5.757099 ACTTAAAGGCTATATATGCGGGT 57.243 39.130 0.00 0.00 0.00 5.28
712 723 6.862469 ACTTAAAGGCTATATATGCGGGTA 57.138 37.500 0.00 0.00 0.00 3.69
713 724 6.637657 ACTTAAAGGCTATATATGCGGGTAC 58.362 40.000 0.00 0.00 0.00 3.34
753 764 3.674997 AGGAAACTCACGTGCATATTGT 58.325 40.909 11.67 0.00 32.90 2.71
754 765 3.436704 AGGAAACTCACGTGCATATTGTG 59.563 43.478 11.67 0.00 32.90 3.33
755 766 3.426159 GGAAACTCACGTGCATATTGTGG 60.426 47.826 11.67 5.45 34.43 4.17
756 767 2.760634 ACTCACGTGCATATTGTGGA 57.239 45.000 11.67 0.00 34.43 4.02
757 768 2.346803 ACTCACGTGCATATTGTGGAC 58.653 47.619 11.67 0.00 44.83 4.02
763 774 1.447945 TGCATATTGTGGACACGTGG 58.552 50.000 21.57 1.66 0.00 4.94
764 775 1.271108 TGCATATTGTGGACACGTGGT 60.271 47.619 21.57 5.35 0.00 4.16
765 776 1.396996 GCATATTGTGGACACGTGGTC 59.603 52.381 21.57 14.25 46.20 4.02
776 787 4.657075 GACACGTGGTCGAATATTTTGT 57.343 40.909 21.57 0.00 40.62 2.83
777 788 4.634991 GACACGTGGTCGAATATTTTGTC 58.365 43.478 21.57 0.00 40.62 3.18
778 789 4.059511 ACACGTGGTCGAATATTTTGTCA 58.940 39.130 21.57 0.00 40.62 3.58
779 790 4.151689 ACACGTGGTCGAATATTTTGTCAG 59.848 41.667 21.57 0.00 40.62 3.51
780 791 4.387559 CACGTGGTCGAATATTTTGTCAGA 59.612 41.667 7.95 0.00 40.62 3.27
781 792 5.063438 CACGTGGTCGAATATTTTGTCAGAT 59.937 40.000 7.95 0.00 40.62 2.90
782 793 5.063438 ACGTGGTCGAATATTTTGTCAGATG 59.937 40.000 0.00 0.00 40.62 2.90
783 794 5.502382 CGTGGTCGAATATTTTGTCAGATGG 60.502 44.000 0.00 0.00 39.71 3.51
784 795 4.335315 TGGTCGAATATTTTGTCAGATGGC 59.665 41.667 0.00 0.00 0.00 4.40
785 796 4.576463 GGTCGAATATTTTGTCAGATGGCT 59.424 41.667 0.00 0.00 0.00 4.75
786 797 5.758296 GGTCGAATATTTTGTCAGATGGCTA 59.242 40.000 0.00 0.00 0.00 3.93
787 798 6.260050 GGTCGAATATTTTGTCAGATGGCTAA 59.740 38.462 0.00 0.00 0.00 3.09
788 799 7.126398 GTCGAATATTTTGTCAGATGGCTAAC 58.874 38.462 0.00 0.00 0.00 2.34
789 800 6.821160 TCGAATATTTTGTCAGATGGCTAACA 59.179 34.615 0.00 0.00 0.00 2.41
790 801 7.011389 TCGAATATTTTGTCAGATGGCTAACAG 59.989 37.037 0.00 0.00 0.00 3.16
791 802 6.949352 ATATTTTGTCAGATGGCTAACAGG 57.051 37.500 0.00 0.00 0.00 4.00
792 803 3.788227 TTTGTCAGATGGCTAACAGGT 57.212 42.857 0.00 0.00 0.00 4.00
793 804 3.788227 TTGTCAGATGGCTAACAGGTT 57.212 42.857 0.00 0.00 0.00 3.50
794 805 4.901197 TTGTCAGATGGCTAACAGGTTA 57.099 40.909 0.00 0.00 0.00 2.85
795 806 4.901197 TGTCAGATGGCTAACAGGTTAA 57.099 40.909 0.00 0.00 0.00 2.01
796 807 4.575885 TGTCAGATGGCTAACAGGTTAAC 58.424 43.478 0.00 0.00 0.00 2.01
797 808 4.286032 TGTCAGATGGCTAACAGGTTAACT 59.714 41.667 5.42 0.00 0.00 2.24
798 809 5.221843 TGTCAGATGGCTAACAGGTTAACTT 60.222 40.000 5.42 0.00 0.00 2.66
799 810 5.705905 GTCAGATGGCTAACAGGTTAACTTT 59.294 40.000 5.42 0.00 0.00 2.66
800 811 6.206829 GTCAGATGGCTAACAGGTTAACTTTT 59.793 38.462 5.42 0.00 0.00 2.27
801 812 6.775629 TCAGATGGCTAACAGGTTAACTTTTT 59.224 34.615 5.42 0.00 0.00 1.94
851 862 9.751542 TTTTTCATATACACGGTTTTGAACATT 57.248 25.926 0.00 0.00 0.00 2.71
852 863 9.751542 TTTTCATATACACGGTTTTGAACATTT 57.248 25.926 0.00 0.00 0.00 2.32
853 864 9.751542 TTTCATATACACGGTTTTGAACATTTT 57.248 25.926 0.00 0.00 0.00 1.82
854 865 8.958175 TCATATACACGGTTTTGAACATTTTC 57.042 30.769 0.00 0.00 0.00 2.29
855 866 8.024285 TCATATACACGGTTTTGAACATTTTCC 58.976 33.333 0.00 0.00 0.00 3.13
856 867 4.729227 ACACGGTTTTGAACATTTTCCT 57.271 36.364 0.00 0.00 0.00 3.36
857 868 5.838531 ACACGGTTTTGAACATTTTCCTA 57.161 34.783 0.00 0.00 0.00 2.94
858 869 6.210287 ACACGGTTTTGAACATTTTCCTAA 57.790 33.333 0.00 0.00 0.00 2.69
859 870 6.037726 ACACGGTTTTGAACATTTTCCTAAC 58.962 36.000 0.00 0.00 0.00 2.34
860 871 6.037098 CACGGTTTTGAACATTTTCCTAACA 58.963 36.000 7.70 0.00 30.88 2.41
861 872 6.699642 CACGGTTTTGAACATTTTCCTAACAT 59.300 34.615 7.70 0.00 30.88 2.71
862 873 6.699642 ACGGTTTTGAACATTTTCCTAACATG 59.300 34.615 0.00 0.00 30.88 3.21
863 874 6.699642 CGGTTTTGAACATTTTCCTAACATGT 59.300 34.615 0.00 0.00 30.88 3.21
864 875 7.306515 CGGTTTTGAACATTTTCCTAACATGTG 60.307 37.037 0.00 0.00 31.37 3.21
865 876 7.344441 GTTTTGAACATTTTCCTAACATGTGC 58.656 34.615 0.00 0.00 31.37 4.57
866 877 6.403866 TTGAACATTTTCCTAACATGTGCT 57.596 33.333 0.00 0.00 31.37 4.40
867 878 5.771469 TGAACATTTTCCTAACATGTGCTG 58.229 37.500 0.00 0.00 31.37 4.41
868 879 5.534278 TGAACATTTTCCTAACATGTGCTGA 59.466 36.000 0.00 0.00 31.37 4.26
869 880 5.633830 ACATTTTCCTAACATGTGCTGAG 57.366 39.130 0.00 0.00 29.74 3.35
870 881 4.082571 ACATTTTCCTAACATGTGCTGAGC 60.083 41.667 0.00 0.00 29.74 4.26
871 882 2.857186 TTCCTAACATGTGCTGAGCA 57.143 45.000 1.40 1.40 35.60 4.26
872 883 3.354948 TTCCTAACATGTGCTGAGCAT 57.645 42.857 11.58 0.00 41.91 3.79
873 884 2.635714 TCCTAACATGTGCTGAGCATG 58.364 47.619 11.58 8.63 46.51 4.06
874 885 2.236893 TCCTAACATGTGCTGAGCATGA 59.763 45.455 11.58 0.07 44.60 3.07
947 961 1.552486 CCTGAGTACTTCCACCCTCCA 60.552 57.143 0.00 0.00 0.00 3.86
1420 1434 5.615708 CGGATGATGTGATTTTCGATCATC 58.384 41.667 11.25 11.25 45.57 2.92
1459 1473 2.304761 GTCCACAAACTACCTGATCCCA 59.695 50.000 0.00 0.00 0.00 4.37
1472 1486 1.340889 TGATCCCAACTGCAAACAAGC 59.659 47.619 0.00 0.00 0.00 4.01
1760 1830 1.661821 GCGACTGGCTATACGCTGG 60.662 63.158 12.14 0.00 46.06 4.85
1835 1905 2.485479 GCCCGATGAGGAAGAATAGCAA 60.485 50.000 0.00 0.00 45.00 3.91
2162 2233 3.528370 CGAGGAAGACCGCCGGAT 61.528 66.667 11.71 0.00 41.83 4.18
2362 2435 1.968310 GGAGATCCTAGCGCCGAAT 59.032 57.895 2.29 0.00 0.00 3.34
2366 2439 0.247736 GATCCTAGCGCCGAATGGAT 59.752 55.000 2.29 10.34 39.90 3.41
2618 2692 6.269194 CCCCACTATATATAGGGAGTCCAAA 58.731 44.000 21.51 0.00 44.30 3.28
2902 3018 1.606994 CGATGACCCCGAAACTTGTCA 60.607 52.381 0.00 0.00 41.52 3.58
3006 3231 2.474410 GGGACTCCGAACAACATTCT 57.526 50.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
313 319 2.828868 ACCTGCAGAAGCGGTTGA 59.171 55.556 17.39 0.00 45.95 3.18
398 404 3.432252 ACTTCCTTTTGTAGTCGCGAATG 59.568 43.478 20.74 0.22 0.00 2.67
414 420 1.112113 ATGTATCCGACGCACTTCCT 58.888 50.000 0.00 0.00 0.00 3.36
450 456 1.673923 GGCCAGCAAAAGAAGCCAATC 60.674 52.381 0.00 0.00 43.32 2.67
462 468 2.044650 GAGCATCTGGGCCAGCAA 60.045 61.111 29.02 13.41 0.00 3.91
469 475 4.100084 TGGTGCCGAGCATCTGGG 62.100 66.667 9.95 0.00 40.78 4.45
561 569 9.302345 CGTATTTGATACACACAATTCTAGTCT 57.698 33.333 0.00 0.00 35.48 3.24
562 570 9.084164 ACGTATTTGATACACACAATTCTAGTC 57.916 33.333 0.00 0.00 35.48 2.59
619 630 9.569167 CTTGTAACTCTCTAATTACATGTCGAA 57.431 33.333 0.00 0.00 40.15 3.71
620 631 8.737175 ACTTGTAACTCTCTAATTACATGTCGA 58.263 33.333 0.00 0.00 41.86 4.20
621 632 8.799091 CACTTGTAACTCTCTAATTACATGTCG 58.201 37.037 0.00 5.89 42.84 4.35
622 633 9.640963 ACACTTGTAACTCTCTAATTACATGTC 57.359 33.333 0.00 0.00 42.84 3.06
623 634 9.998106 AACACTTGTAACTCTCTAATTACATGT 57.002 29.630 2.69 2.69 44.26 3.21
628 639 9.204570 GCTCAAACACTTGTAACTCTCTAATTA 57.795 33.333 0.00 0.00 33.94 1.40
629 640 7.934120 AGCTCAAACACTTGTAACTCTCTAATT 59.066 33.333 0.00 0.00 33.94 1.40
630 641 7.386299 CAGCTCAAACACTTGTAACTCTCTAAT 59.614 37.037 0.00 0.00 33.94 1.73
631 642 6.701841 CAGCTCAAACACTTGTAACTCTCTAA 59.298 38.462 0.00 0.00 33.94 2.10
632 643 6.040504 TCAGCTCAAACACTTGTAACTCTCTA 59.959 38.462 0.00 0.00 33.94 2.43
633 644 5.053145 CAGCTCAAACACTTGTAACTCTCT 58.947 41.667 0.00 0.00 33.94 3.10
634 645 5.050490 TCAGCTCAAACACTTGTAACTCTC 58.950 41.667 0.00 0.00 33.94 3.20
635 646 5.023533 TCAGCTCAAACACTTGTAACTCT 57.976 39.130 0.00 0.00 33.94 3.24
636 647 5.064707 TGTTCAGCTCAAACACTTGTAACTC 59.935 40.000 7.03 0.00 31.90 3.01
637 648 4.941263 TGTTCAGCTCAAACACTTGTAACT 59.059 37.500 7.03 0.00 31.90 2.24
638 649 5.229921 TGTTCAGCTCAAACACTTGTAAC 57.770 39.130 7.03 0.00 31.90 2.50
646 657 4.881273 ACTTACATGTGTTCAGCTCAAACA 59.119 37.500 9.11 7.03 34.37 2.83
647 658 5.207768 CACTTACATGTGTTCAGCTCAAAC 58.792 41.667 9.11 2.19 33.61 2.93
648 659 5.422666 CACTTACATGTGTTCAGCTCAAA 57.577 39.130 9.11 0.00 33.61 2.69
659 670 3.064820 GCCGGGAATTACACTTACATGTG 59.935 47.826 9.11 0.00 43.07 3.21
660 671 3.054655 AGCCGGGAATTACACTTACATGT 60.055 43.478 2.18 2.69 36.56 3.21
661 672 3.541632 AGCCGGGAATTACACTTACATG 58.458 45.455 2.18 0.00 0.00 3.21
662 673 3.926058 AGCCGGGAATTACACTTACAT 57.074 42.857 2.18 0.00 0.00 2.29
663 674 3.706600 AAGCCGGGAATTACACTTACA 57.293 42.857 2.18 0.00 0.00 2.41
664 675 5.362263 TCATAAGCCGGGAATTACACTTAC 58.638 41.667 2.18 0.00 0.00 2.34
665 676 5.617528 TCATAAGCCGGGAATTACACTTA 57.382 39.130 2.18 0.00 0.00 2.24
666 677 4.497291 TCATAAGCCGGGAATTACACTT 57.503 40.909 2.18 0.00 0.00 3.16
667 678 4.706842 ATCATAAGCCGGGAATTACACT 57.293 40.909 2.18 0.00 0.00 3.55
668 679 5.548406 AGTATCATAAGCCGGGAATTACAC 58.452 41.667 2.18 0.00 0.00 2.90
669 680 5.818678 AGTATCATAAGCCGGGAATTACA 57.181 39.130 2.18 0.00 0.00 2.41
670 681 8.611654 TTTAAGTATCATAAGCCGGGAATTAC 57.388 34.615 2.18 0.00 0.00 1.89
671 682 7.881232 CCTTTAAGTATCATAAGCCGGGAATTA 59.119 37.037 2.18 0.00 0.00 1.40
672 683 6.715264 CCTTTAAGTATCATAAGCCGGGAATT 59.285 38.462 2.18 0.00 0.00 2.17
673 684 6.238648 CCTTTAAGTATCATAAGCCGGGAAT 58.761 40.000 2.18 0.00 0.00 3.01
674 685 5.617252 CCTTTAAGTATCATAAGCCGGGAA 58.383 41.667 2.18 0.00 0.00 3.97
675 686 4.504340 GCCTTTAAGTATCATAAGCCGGGA 60.504 45.833 2.18 0.00 0.00 5.14
676 687 3.751698 GCCTTTAAGTATCATAAGCCGGG 59.248 47.826 2.18 0.00 0.00 5.73
677 688 4.642429 AGCCTTTAAGTATCATAAGCCGG 58.358 43.478 0.00 0.00 0.00 6.13
684 695 8.150945 CCCGCATATATAGCCTTTAAGTATCAT 58.849 37.037 0.00 0.00 0.00 2.45
685 696 7.125204 ACCCGCATATATAGCCTTTAAGTATCA 59.875 37.037 0.00 0.00 0.00 2.15
686 697 7.498443 ACCCGCATATATAGCCTTTAAGTATC 58.502 38.462 0.00 0.00 0.00 2.24
687 698 7.433537 ACCCGCATATATAGCCTTTAAGTAT 57.566 36.000 0.00 0.00 0.00 2.12
688 699 6.862469 ACCCGCATATATAGCCTTTAAGTA 57.138 37.500 0.00 0.00 0.00 2.24
689 700 5.757099 ACCCGCATATATAGCCTTTAAGT 57.243 39.130 0.00 0.00 0.00 2.24
690 701 6.047231 GGTACCCGCATATATAGCCTTTAAG 58.953 44.000 0.00 0.00 0.00 1.85
691 702 5.981174 GGTACCCGCATATATAGCCTTTAA 58.019 41.667 0.00 0.00 0.00 1.52
692 703 5.603170 GGTACCCGCATATATAGCCTTTA 57.397 43.478 0.00 0.00 0.00 1.85
693 704 4.482952 GGTACCCGCATATATAGCCTTT 57.517 45.455 0.00 0.00 0.00 3.11
720 731 8.944029 GCACGTGAGTTTCCTCTAGTATATATA 58.056 37.037 22.23 0.00 46.40 0.86
721 732 7.447545 TGCACGTGAGTTTCCTCTAGTATATAT 59.552 37.037 22.23 0.00 46.40 0.86
722 733 6.769341 TGCACGTGAGTTTCCTCTAGTATATA 59.231 38.462 22.23 0.00 46.40 0.86
723 734 5.593095 TGCACGTGAGTTTCCTCTAGTATAT 59.407 40.000 22.23 0.00 46.40 0.86
724 735 4.945543 TGCACGTGAGTTTCCTCTAGTATA 59.054 41.667 22.23 0.00 46.40 1.47
725 736 3.762288 TGCACGTGAGTTTCCTCTAGTAT 59.238 43.478 22.23 0.00 46.40 2.12
726 737 3.151554 TGCACGTGAGTTTCCTCTAGTA 58.848 45.455 22.23 0.00 46.40 1.82
727 738 1.961394 TGCACGTGAGTTTCCTCTAGT 59.039 47.619 22.23 0.00 46.40 2.57
728 739 2.724977 TGCACGTGAGTTTCCTCTAG 57.275 50.000 22.23 0.00 46.40 2.43
729 740 5.109210 CAATATGCACGTGAGTTTCCTCTA 58.891 41.667 22.23 0.00 46.40 2.43
730 741 3.895232 ATATGCACGTGAGTTTCCTCT 57.105 42.857 22.23 0.00 46.40 3.69
731 742 3.684788 ACAATATGCACGTGAGTTTCCTC 59.315 43.478 22.23 0.00 46.40 3.71
732 743 3.436704 CACAATATGCACGTGAGTTTCCT 59.563 43.478 22.23 0.00 46.40 3.36
733 744 3.426159 CCACAATATGCACGTGAGTTTCC 60.426 47.826 22.23 0.00 46.40 3.13
734 745 3.435327 TCCACAATATGCACGTGAGTTTC 59.565 43.478 22.23 0.69 46.40 2.78
735 746 3.188460 GTCCACAATATGCACGTGAGTTT 59.812 43.478 22.23 3.62 46.40 2.66
736 747 2.742053 GTCCACAATATGCACGTGAGTT 59.258 45.455 22.23 5.08 46.40 3.01
738 749 2.094258 GTGTCCACAATATGCACGTGAG 59.906 50.000 22.23 3.42 32.23 3.51
739 750 2.073056 GTGTCCACAATATGCACGTGA 58.927 47.619 22.23 4.80 32.23 4.35
740 751 1.201910 CGTGTCCACAATATGCACGTG 60.202 52.381 12.28 12.28 45.07 4.49
741 752 1.075542 CGTGTCCACAATATGCACGT 58.924 50.000 7.15 0.00 45.07 4.49
742 753 3.875813 CGTGTCCACAATATGCACG 57.124 52.632 0.00 0.00 44.88 5.34
743 754 1.130373 CCACGTGTCCACAATATGCAC 59.870 52.381 15.65 0.00 0.00 4.57
744 755 1.271108 ACCACGTGTCCACAATATGCA 60.271 47.619 15.65 0.00 0.00 3.96
745 756 1.396996 GACCACGTGTCCACAATATGC 59.603 52.381 15.65 0.00 38.09 3.14
746 757 1.658596 CGACCACGTGTCCACAATATG 59.341 52.381 15.65 0.00 41.18 1.78
747 758 1.546923 TCGACCACGTGTCCACAATAT 59.453 47.619 15.65 0.00 41.18 1.28
748 759 0.960286 TCGACCACGTGTCCACAATA 59.040 50.000 15.65 0.00 41.18 1.90
749 760 0.105224 TTCGACCACGTGTCCACAAT 59.895 50.000 15.65 0.00 41.18 2.71
750 761 0.105224 ATTCGACCACGTGTCCACAA 59.895 50.000 15.65 0.78 41.18 3.33
751 762 0.960286 TATTCGACCACGTGTCCACA 59.040 50.000 15.65 0.00 41.18 4.17
752 763 2.288961 ATATTCGACCACGTGTCCAC 57.711 50.000 15.65 1.85 41.18 4.02
753 764 3.322211 AAATATTCGACCACGTGTCCA 57.678 42.857 15.65 0.00 41.18 4.02
754 765 3.434299 ACAAAATATTCGACCACGTGTCC 59.566 43.478 15.65 4.56 41.18 4.02
755 766 4.150980 TGACAAAATATTCGACCACGTGTC 59.849 41.667 15.65 11.01 40.81 3.67
756 767 4.059511 TGACAAAATATTCGACCACGTGT 58.940 39.130 15.65 2.26 40.69 4.49
757 768 4.387559 TCTGACAAAATATTCGACCACGTG 59.612 41.667 9.08 9.08 40.69 4.49
758 769 4.562082 TCTGACAAAATATTCGACCACGT 58.438 39.130 0.00 0.00 40.69 4.49
759 770 5.492854 CATCTGACAAAATATTCGACCACG 58.507 41.667 0.00 0.00 41.26 4.94
760 771 5.730568 GCCATCTGACAAAATATTCGACCAC 60.731 44.000 0.00 0.00 0.00 4.16
761 772 4.335315 GCCATCTGACAAAATATTCGACCA 59.665 41.667 0.00 0.00 0.00 4.02
762 773 4.576463 AGCCATCTGACAAAATATTCGACC 59.424 41.667 0.00 0.00 0.00 4.79
763 774 5.741388 AGCCATCTGACAAAATATTCGAC 57.259 39.130 0.00 0.00 0.00 4.20
764 775 6.821160 TGTTAGCCATCTGACAAAATATTCGA 59.179 34.615 0.00 0.00 36.11 3.71
765 776 7.015226 TGTTAGCCATCTGACAAAATATTCG 57.985 36.000 0.00 0.00 36.11 3.34
766 777 7.067494 ACCTGTTAGCCATCTGACAAAATATTC 59.933 37.037 0.00 0.00 38.19 1.75
767 778 6.891908 ACCTGTTAGCCATCTGACAAAATATT 59.108 34.615 0.00 0.00 38.19 1.28
768 779 6.426587 ACCTGTTAGCCATCTGACAAAATAT 58.573 36.000 0.00 0.00 38.19 1.28
769 780 5.815581 ACCTGTTAGCCATCTGACAAAATA 58.184 37.500 0.00 0.00 38.19 1.40
770 781 4.666512 ACCTGTTAGCCATCTGACAAAAT 58.333 39.130 0.00 0.00 38.19 1.82
771 782 4.098914 ACCTGTTAGCCATCTGACAAAA 57.901 40.909 0.00 0.00 38.19 2.44
772 783 3.788227 ACCTGTTAGCCATCTGACAAA 57.212 42.857 0.00 0.00 38.19 2.83
773 784 3.788227 AACCTGTTAGCCATCTGACAA 57.212 42.857 0.00 0.00 38.19 3.18
774 785 4.286032 AGTTAACCTGTTAGCCATCTGACA 59.714 41.667 0.88 0.00 36.60 3.58
775 786 4.833390 AGTTAACCTGTTAGCCATCTGAC 58.167 43.478 0.88 0.00 0.00 3.51
776 787 5.499004 AAGTTAACCTGTTAGCCATCTGA 57.501 39.130 0.88 0.00 0.00 3.27
777 788 6.575162 AAAAGTTAACCTGTTAGCCATCTG 57.425 37.500 0.88 0.00 0.00 2.90
825 836 9.751542 AATGTTCAAAACCGTGTATATGAAAAA 57.248 25.926 0.00 0.00 0.00 1.94
826 837 9.751542 AAATGTTCAAAACCGTGTATATGAAAA 57.248 25.926 0.00 0.00 0.00 2.29
827 838 9.751542 AAAATGTTCAAAACCGTGTATATGAAA 57.248 25.926 0.00 0.00 0.00 2.69
828 839 9.400638 GAAAATGTTCAAAACCGTGTATATGAA 57.599 29.630 0.00 0.00 33.61 2.57
829 840 8.024285 GGAAAATGTTCAAAACCGTGTATATGA 58.976 33.333 0.00 0.00 35.25 2.15
830 841 8.026607 AGGAAAATGTTCAAAACCGTGTATATG 58.973 33.333 0.00 0.00 35.25 1.78
831 842 8.117813 AGGAAAATGTTCAAAACCGTGTATAT 57.882 30.769 0.00 0.00 35.25 0.86
832 843 7.513371 AGGAAAATGTTCAAAACCGTGTATA 57.487 32.000 0.00 0.00 35.25 1.47
833 844 6.399639 AGGAAAATGTTCAAAACCGTGTAT 57.600 33.333 0.00 0.00 35.25 2.29
834 845 5.838531 AGGAAAATGTTCAAAACCGTGTA 57.161 34.783 0.00 0.00 35.25 2.90
835 846 4.729227 AGGAAAATGTTCAAAACCGTGT 57.271 36.364 0.00 0.00 35.25 4.49
836 847 6.037098 TGTTAGGAAAATGTTCAAAACCGTG 58.963 36.000 0.00 0.00 35.25 4.94
837 848 6.210287 TGTTAGGAAAATGTTCAAAACCGT 57.790 33.333 0.00 0.00 35.25 4.83
838 849 6.699642 ACATGTTAGGAAAATGTTCAAAACCG 59.300 34.615 0.00 0.00 35.25 4.44
839 850 7.518211 GCACATGTTAGGAAAATGTTCAAAACC 60.518 37.037 0.00 0.00 35.25 3.27
840 851 7.224557 AGCACATGTTAGGAAAATGTTCAAAAC 59.775 33.333 0.00 2.14 35.25 2.43
841 852 7.224362 CAGCACATGTTAGGAAAATGTTCAAAA 59.776 33.333 0.00 0.00 35.25 2.44
842 853 6.700960 CAGCACATGTTAGGAAAATGTTCAAA 59.299 34.615 0.00 0.00 35.25 2.69
843 854 6.040278 TCAGCACATGTTAGGAAAATGTTCAA 59.960 34.615 0.00 0.00 35.25 2.69
844 855 5.534278 TCAGCACATGTTAGGAAAATGTTCA 59.466 36.000 0.00 0.00 35.25 3.18
845 856 6.012658 TCAGCACATGTTAGGAAAATGTTC 57.987 37.500 0.00 0.00 32.27 3.18
846 857 5.565439 GCTCAGCACATGTTAGGAAAATGTT 60.565 40.000 0.00 0.00 32.27 2.71
847 858 4.082571 GCTCAGCACATGTTAGGAAAATGT 60.083 41.667 0.00 0.00 34.92 2.71
848 859 4.082625 TGCTCAGCACATGTTAGGAAAATG 60.083 41.667 0.00 0.00 31.71 2.32
849 860 4.081406 TGCTCAGCACATGTTAGGAAAAT 58.919 39.130 0.00 0.00 31.71 1.82
850 861 3.485394 TGCTCAGCACATGTTAGGAAAA 58.515 40.909 0.00 0.00 31.71 2.29
851 862 3.138884 TGCTCAGCACATGTTAGGAAA 57.861 42.857 0.00 0.00 31.71 3.13
852 863 2.857186 TGCTCAGCACATGTTAGGAA 57.143 45.000 0.00 0.00 31.71 3.36
853 864 2.236893 TCATGCTCAGCACATGTTAGGA 59.763 45.455 0.00 0.00 43.04 2.94
854 865 2.635714 TCATGCTCAGCACATGTTAGG 58.364 47.619 0.00 0.00 43.04 2.69
855 866 4.261072 GGATTCATGCTCAGCACATGTTAG 60.261 45.833 0.00 0.00 43.04 2.34
856 867 3.628942 GGATTCATGCTCAGCACATGTTA 59.371 43.478 0.00 0.00 43.04 2.41
857 868 2.426024 GGATTCATGCTCAGCACATGTT 59.574 45.455 0.00 0.00 43.04 2.71
858 869 2.022195 GGATTCATGCTCAGCACATGT 58.978 47.619 0.00 0.00 43.04 3.21
859 870 1.337071 GGGATTCATGCTCAGCACATG 59.663 52.381 0.00 0.00 43.04 3.21
860 871 1.688772 GGGATTCATGCTCAGCACAT 58.311 50.000 0.00 0.00 43.04 3.21
861 872 0.394762 GGGGATTCATGCTCAGCACA 60.395 55.000 0.00 0.00 43.04 4.57
862 873 0.106819 AGGGGATTCATGCTCAGCAC 60.107 55.000 0.00 0.00 43.04 4.40
863 874 1.141657 GTAGGGGATTCATGCTCAGCA 59.858 52.381 0.00 0.00 44.86 4.41
864 875 1.875576 CGTAGGGGATTCATGCTCAGC 60.876 57.143 0.00 0.00 0.00 4.26
865 876 1.875576 GCGTAGGGGATTCATGCTCAG 60.876 57.143 0.00 0.00 0.00 3.35
866 877 0.106708 GCGTAGGGGATTCATGCTCA 59.893 55.000 0.00 0.00 0.00 4.26
867 878 0.603975 GGCGTAGGGGATTCATGCTC 60.604 60.000 0.00 0.00 0.00 4.26
868 879 1.056700 AGGCGTAGGGGATTCATGCT 61.057 55.000 0.00 0.00 0.00 3.79
869 880 0.603975 GAGGCGTAGGGGATTCATGC 60.604 60.000 0.00 0.00 0.00 4.06
870 881 0.319900 CGAGGCGTAGGGGATTCATG 60.320 60.000 0.00 0.00 0.00 3.07
871 882 2.050269 CGAGGCGTAGGGGATTCAT 58.950 57.895 0.00 0.00 0.00 2.57
872 883 2.792947 GCGAGGCGTAGGGGATTCA 61.793 63.158 0.00 0.00 0.00 2.57
873 884 2.029221 GCGAGGCGTAGGGGATTC 59.971 66.667 0.00 0.00 0.00 2.52
947 961 0.603569 AGACGGCGATCAGACTTTGT 59.396 50.000 16.62 0.00 0.00 2.83
1281 1295 4.038402 CAGGAAGCTTGGACAACAAATCTT 59.962 41.667 2.10 0.00 38.91 2.40
1472 1486 5.292101 CCTTTAAGGAGTCGCTCAACAATAG 59.708 44.000 4.75 0.62 37.67 1.73
1835 1905 0.984995 GTCCAAGGAAGCACTAGGGT 59.015 55.000 0.00 0.00 0.00 4.34
2162 2233 1.271934 CGTTCCCCAACATTCATTGCA 59.728 47.619 0.00 0.00 32.14 4.08
2366 2439 4.243008 TTGAACGCGGAGGTGCCA 62.243 61.111 12.47 0.00 35.94 4.92
2434 2508 3.681313 GCCATCTTCCTCAACTTCTCCTC 60.681 52.174 0.00 0.00 0.00 3.71
2441 2515 1.558756 CTGGAGCCATCTTCCTCAACT 59.441 52.381 0.00 0.00 0.00 3.16
2732 2810 0.394352 ATGCGCCTAGGGTTTCAAGG 60.394 55.000 11.72 0.00 0.00 3.61
2737 2816 2.275418 CCCATGCGCCTAGGGTTT 59.725 61.111 17.93 0.00 37.81 3.27
2777 2856 2.123726 GCCTTGGCCTACATGGGG 60.124 66.667 3.32 0.00 42.97 4.96
2884 2964 1.876416 CGTGACAAGTTTCGGGGTCAT 60.876 52.381 0.00 0.00 41.73 3.06
2902 3018 0.178068 AGTGCTATTTCGGGCATCGT 59.822 50.000 0.00 0.00 40.66 3.73
3006 3231 7.676468 TGTAGGGATATGTATATGCAGTAACCA 59.324 37.037 0.00 0.00 33.34 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.