Multiple sequence alignment - TraesCS2A01G092100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G092100 chr2A 100.000 2693 0 0 1 2693 45072135 45074827 0.000000e+00 4974.0
1 TraesCS2A01G092100 chr2A 89.189 148 13 2 1974 2121 45081354 45081498 5.920000e-42 182.0
2 TraesCS2A01G092100 chr2B 87.879 2145 149 40 466 2566 68196002 68198079 0.000000e+00 2418.0
3 TraesCS2A01G092100 chr2D 89.943 1571 83 34 396 1948 43287927 43289440 0.000000e+00 1956.0
4 TraesCS2A01G092100 chr2D 79.783 737 68 31 1939 2652 43291234 43291912 6.790000e-126 460.0
5 TraesCS2A01G092100 chr3D 74.446 1264 234 55 679 1897 520097640 520096421 1.890000e-126 462.0
6 TraesCS2A01G092100 chr3D 74.537 1135 221 48 581 1675 568819195 568818089 1.480000e-117 433.0
7 TraesCS2A01G092100 chr3D 74.581 775 158 24 1084 1844 520427107 520427856 1.210000e-78 303.0
8 TraesCS2A01G092100 chr3D 76.375 491 85 21 581 1046 520426612 520427096 4.480000e-58 235.0
9 TraesCS2A01G092100 chr3D 95.181 83 3 1 1 82 93027741 93027659 2.180000e-26 130.0
10 TraesCS2A01G092100 chr3D 84.252 127 18 1 1766 1892 520427924 520428048 3.640000e-24 122.0
11 TraesCS2A01G092100 chr3D 77.489 231 33 12 2082 2307 569126759 569126543 1.310000e-23 121.0
12 TraesCS2A01G092100 chr3D 81.301 123 17 5 930 1048 567517357 567517477 7.940000e-16 95.3
13 TraesCS2A01G092100 chr3D 83.544 79 11 1 1766 1844 520427852 520427928 3.720000e-09 73.1
14 TraesCS2A01G092100 chr3A 74.513 1130 222 39 581 1675 700739299 700740397 5.330000e-117 431.0
15 TraesCS2A01G092100 chr3A 85.106 188 28 0 581 768 701359363 701359550 2.740000e-45 193.0
16 TraesCS2A01G092100 chr3A 84.236 203 25 6 557 757 702421657 702421460 9.840000e-45 191.0
17 TraesCS2A01G092100 chr3A 90.110 91 9 0 6 96 741361517 741361607 4.710000e-23 119.0
18 TraesCS2A01G092100 chr3B 75.423 769 157 19 1084 1844 685394066 685394810 7.140000e-91 344.0
19 TraesCS2A01G092100 chr3B 82.143 224 31 3 556 770 753672729 753672952 1.650000e-42 183.0
20 TraesCS2A01G092100 chrUn 73.913 621 138 18 1083 1694 287633807 287634412 7.500000e-56 228.0
21 TraesCS2A01G092100 chrUn 73.913 621 138 18 1083 1694 292972207 292971602 7.500000e-56 228.0
22 TraesCS2A01G092100 chrUn 73.913 621 138 18 1083 1694 338767630 338767025 7.500000e-56 228.0
23 TraesCS2A01G092100 chrUn 87.647 170 21 0 599 768 340249236 340249067 5.880000e-47 198.0
24 TraesCS2A01G092100 chrUn 89.583 96 10 0 1 96 162316589 162316494 3.640000e-24 122.0
25 TraesCS2A01G092100 chr6D 80.822 292 46 7 1752 2036 472763186 472762898 1.260000e-53 220.0
26 TraesCS2A01G092100 chr4A 91.667 96 8 0 1 96 743679777 743679872 1.680000e-27 134.0
27 TraesCS2A01G092100 chr7A 75.667 300 45 20 1754 2043 41047050 41046769 1.010000e-24 124.0
28 TraesCS2A01G092100 chr7A 89.583 96 10 0 1 96 109080778 109080873 3.640000e-24 122.0
29 TraesCS2A01G092100 chr7D 89.583 96 9 1 1 96 386906968 386907062 1.310000e-23 121.0
30 TraesCS2A01G092100 chr7D 87.500 96 12 0 1 96 17869443 17869538 7.880000e-21 111.0
31 TraesCS2A01G092100 chr5D 88.660 97 9 2 1 96 422766758 422766663 1.690000e-22 117.0
32 TraesCS2A01G092100 chr1A 86.667 105 12 2 1 105 57307339 57307237 6.090000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G092100 chr2A 45072135 45074827 2692 False 4974 4974 100.000 1 2693 1 chr2A.!!$F1 2692
1 TraesCS2A01G092100 chr2B 68196002 68198079 2077 False 2418 2418 87.879 466 2566 1 chr2B.!!$F1 2100
2 TraesCS2A01G092100 chr2D 43287927 43291912 3985 False 1208 1956 84.863 396 2652 2 chr2D.!!$F1 2256
3 TraesCS2A01G092100 chr3D 520096421 520097640 1219 True 462 462 74.446 679 1897 1 chr3D.!!$R2 1218
4 TraesCS2A01G092100 chr3D 568818089 568819195 1106 True 433 433 74.537 581 1675 1 chr3D.!!$R3 1094
5 TraesCS2A01G092100 chr3A 700739299 700740397 1098 False 431 431 74.513 581 1675 1 chr3A.!!$F1 1094
6 TraesCS2A01G092100 chr3B 685394066 685394810 744 False 344 344 75.423 1084 1844 1 chr3B.!!$F1 760
7 TraesCS2A01G092100 chrUn 287633807 287634412 605 False 228 228 73.913 1083 1694 1 chrUn.!!$F1 611
8 TraesCS2A01G092100 chrUn 292971602 292972207 605 True 228 228 73.913 1083 1694 1 chrUn.!!$R2 611
9 TraesCS2A01G092100 chrUn 338767025 338767630 605 True 228 228 73.913 1083 1694 1 chrUn.!!$R3 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 452 0.036483 TGCATGCCGTTTGAGAGCTA 60.036 50.0 16.68 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2389 4346 0.322008 ACAGCCTGCTTTCTACCAGC 60.322 55.0 0.0 0.0 37.82 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.519032 ACTCCCTTCGTTTCAAAATAAATGA 57.481 32.000 0.00 0.00 33.60 2.57
25 26 8.122472 ACTCCCTTCGTTTCAAAATAAATGAT 57.878 30.769 0.00 0.00 35.03 2.45
26 27 8.585018 ACTCCCTTCGTTTCAAAATAAATGATT 58.415 29.630 0.00 0.00 35.03 2.57
27 28 8.980143 TCCCTTCGTTTCAAAATAAATGATTC 57.020 30.769 0.00 0.00 35.03 2.52
28 29 8.580720 TCCCTTCGTTTCAAAATAAATGATTCA 58.419 29.630 0.00 0.00 35.03 2.57
29 30 9.202273 CCCTTCGTTTCAAAATAAATGATTCAA 57.798 29.630 0.00 0.00 35.03 2.69
89 90 9.956720 AGTTGAGTCATTTATTTTGAAACAGAG 57.043 29.630 0.00 0.00 0.00 3.35
90 91 9.185192 GTTGAGTCATTTATTTTGAAACAGAGG 57.815 33.333 0.00 0.00 0.00 3.69
91 92 7.885297 TGAGTCATTTATTTTGAAACAGAGGG 58.115 34.615 0.00 0.00 0.00 4.30
92 93 7.723616 TGAGTCATTTATTTTGAAACAGAGGGA 59.276 33.333 0.00 0.00 0.00 4.20
93 94 8.115490 AGTCATTTATTTTGAAACAGAGGGAG 57.885 34.615 0.00 0.00 0.00 4.30
94 95 7.725844 AGTCATTTATTTTGAAACAGAGGGAGT 59.274 33.333 0.00 0.00 0.00 3.85
95 96 9.010029 GTCATTTATTTTGAAACAGAGGGAGTA 57.990 33.333 0.00 0.00 0.00 2.59
96 97 9.010029 TCATTTATTTTGAAACAGAGGGAGTAC 57.990 33.333 0.00 0.00 0.00 2.73
97 98 7.754851 TTTATTTTGAAACAGAGGGAGTACC 57.245 36.000 0.00 0.00 40.67 3.34
112 113 6.710597 GGGAGTACCTTTTGTTCTCTTTTT 57.289 37.500 0.00 0.00 40.26 1.94
113 114 6.736123 GGGAGTACCTTTTGTTCTCTTTTTC 58.264 40.000 0.00 0.00 40.26 2.29
114 115 6.238953 GGGAGTACCTTTTGTTCTCTTTTTCC 60.239 42.308 0.00 0.00 40.26 3.13
115 116 6.238953 GGAGTACCTTTTGTTCTCTTTTTCCC 60.239 42.308 0.00 0.00 40.26 3.97
116 117 6.432581 AGTACCTTTTGTTCTCTTTTTCCCT 58.567 36.000 0.00 0.00 0.00 4.20
117 118 5.854010 ACCTTTTGTTCTCTTTTTCCCTC 57.146 39.130 0.00 0.00 0.00 4.30
118 119 5.269189 ACCTTTTGTTCTCTTTTTCCCTCA 58.731 37.500 0.00 0.00 0.00 3.86
119 120 5.719563 ACCTTTTGTTCTCTTTTTCCCTCAA 59.280 36.000 0.00 0.00 0.00 3.02
120 121 6.212589 ACCTTTTGTTCTCTTTTTCCCTCAAA 59.787 34.615 0.00 0.00 0.00 2.69
121 122 7.092891 ACCTTTTGTTCTCTTTTTCCCTCAAAT 60.093 33.333 0.00 0.00 0.00 2.32
122 123 7.770433 CCTTTTGTTCTCTTTTTCCCTCAAATT 59.230 33.333 0.00 0.00 0.00 1.82
123 124 9.816354 CTTTTGTTCTCTTTTTCCCTCAAATTA 57.184 29.630 0.00 0.00 0.00 1.40
126 127 9.981114 TTGTTCTCTTTTTCCCTCAAATTATTC 57.019 29.630 0.00 0.00 0.00 1.75
127 128 8.296713 TGTTCTCTTTTTCCCTCAAATTATTCG 58.703 33.333 0.00 0.00 0.00 3.34
128 129 8.512138 GTTCTCTTTTTCCCTCAAATTATTCGA 58.488 33.333 0.00 0.00 0.00 3.71
129 130 8.040716 TCTCTTTTTCCCTCAAATTATTCGAC 57.959 34.615 0.00 0.00 0.00 4.20
130 131 7.663905 TCTCTTTTTCCCTCAAATTATTCGACA 59.336 33.333 0.00 0.00 0.00 4.35
131 132 8.348285 TCTTTTTCCCTCAAATTATTCGACAT 57.652 30.769 0.00 0.00 0.00 3.06
132 133 8.802267 TCTTTTTCCCTCAAATTATTCGACATT 58.198 29.630 0.00 0.00 0.00 2.71
133 134 9.423061 CTTTTTCCCTCAAATTATTCGACATTT 57.577 29.630 0.00 0.00 0.00 2.32
134 135 8.980143 TTTTCCCTCAAATTATTCGACATTTC 57.020 30.769 0.00 0.00 0.00 2.17
136 137 4.970003 CCCTCAAATTATTCGACATTTCGC 59.030 41.667 0.00 0.00 45.46 4.70
137 138 4.970003 CCTCAAATTATTCGACATTTCGCC 59.030 41.667 0.00 0.00 45.46 5.54
138 139 5.448496 CCTCAAATTATTCGACATTTCGCCA 60.448 40.000 0.00 0.00 45.46 5.69
139 140 5.568482 TCAAATTATTCGACATTTCGCCAG 58.432 37.500 0.00 0.00 45.46 4.85
140 141 5.352846 TCAAATTATTCGACATTTCGCCAGA 59.647 36.000 0.00 0.00 45.46 3.86
141 142 5.409643 AATTATTCGACATTTCGCCAGAG 57.590 39.130 0.00 0.00 45.46 3.35
142 143 1.009829 ATTCGACATTTCGCCAGAGC 58.990 50.000 0.00 0.00 45.46 4.09
143 144 0.320334 TTCGACATTTCGCCAGAGCA 60.320 50.000 0.00 0.00 45.46 4.26
144 145 0.737367 TCGACATTTCGCCAGAGCAG 60.737 55.000 0.00 0.00 45.46 4.24
145 146 0.737367 CGACATTTCGCCAGAGCAGA 60.737 55.000 0.00 0.00 38.71 4.26
146 147 1.442769 GACATTTCGCCAGAGCAGAA 58.557 50.000 0.00 0.00 39.83 3.02
147 148 2.012673 GACATTTCGCCAGAGCAGAAT 58.987 47.619 0.00 0.00 39.83 2.40
148 149 2.421424 GACATTTCGCCAGAGCAGAATT 59.579 45.455 0.00 0.00 39.83 2.17
149 150 3.609853 ACATTTCGCCAGAGCAGAATTA 58.390 40.909 0.00 0.00 39.83 1.40
150 151 3.375299 ACATTTCGCCAGAGCAGAATTAC 59.625 43.478 0.00 0.00 39.83 1.89
151 152 2.024176 TTCGCCAGAGCAGAATTACC 57.976 50.000 0.00 0.00 39.83 2.85
152 153 0.901827 TCGCCAGAGCAGAATTACCA 59.098 50.000 0.00 0.00 39.83 3.25
153 154 1.277842 TCGCCAGAGCAGAATTACCAA 59.722 47.619 0.00 0.00 39.83 3.67
154 155 1.667724 CGCCAGAGCAGAATTACCAAG 59.332 52.381 0.00 0.00 39.83 3.61
155 156 2.019984 GCCAGAGCAGAATTACCAAGG 58.980 52.381 0.00 0.00 39.53 3.61
156 157 2.019984 CCAGAGCAGAATTACCAAGGC 58.980 52.381 0.00 0.00 0.00 4.35
157 158 2.618816 CCAGAGCAGAATTACCAAGGCA 60.619 50.000 0.00 0.00 0.00 4.75
158 159 3.285484 CAGAGCAGAATTACCAAGGCAT 58.715 45.455 0.00 0.00 0.00 4.40
159 160 3.066342 CAGAGCAGAATTACCAAGGCATG 59.934 47.826 0.00 0.00 0.00 4.06
160 161 1.753073 AGCAGAATTACCAAGGCATGC 59.247 47.619 9.90 9.90 0.00 4.06
161 162 1.753073 GCAGAATTACCAAGGCATGCT 59.247 47.619 18.92 0.00 0.00 3.79
162 163 2.480759 GCAGAATTACCAAGGCATGCTG 60.481 50.000 18.92 8.91 0.00 4.41
163 164 2.100252 CAGAATTACCAAGGCATGCTGG 59.900 50.000 21.21 21.21 38.77 4.85
164 165 1.410153 GAATTACCAAGGCATGCTGGG 59.590 52.381 25.09 21.19 37.00 4.45
165 166 0.336048 ATTACCAAGGCATGCTGGGT 59.664 50.000 25.09 24.74 37.00 4.51
166 167 0.611618 TTACCAAGGCATGCTGGGTG 60.612 55.000 27.32 16.70 37.00 4.61
167 168 1.496444 TACCAAGGCATGCTGGGTGA 61.496 55.000 27.32 13.30 37.00 4.02
168 169 2.345760 CCAAGGCATGCTGGGTGAC 61.346 63.158 18.92 0.00 0.00 3.67
182 183 1.573108 GGTGACCATGGAGAAGAGGA 58.427 55.000 21.47 0.00 0.00 3.71
183 184 2.122768 GGTGACCATGGAGAAGAGGAT 58.877 52.381 21.47 0.00 0.00 3.24
184 185 2.158842 GGTGACCATGGAGAAGAGGATG 60.159 54.545 21.47 0.00 0.00 3.51
185 186 2.121948 TGACCATGGAGAAGAGGATGG 58.878 52.381 21.47 0.00 41.11 3.51
186 187 2.293118 TGACCATGGAGAAGAGGATGGA 60.293 50.000 21.47 0.00 38.10 3.41
187 188 2.103941 GACCATGGAGAAGAGGATGGAC 59.896 54.545 21.47 0.00 38.10 4.02
188 189 1.069823 CCATGGAGAAGAGGATGGACG 59.930 57.143 5.56 0.00 38.10 4.79
189 190 2.034878 CATGGAGAAGAGGATGGACGA 58.965 52.381 0.00 0.00 0.00 4.20
190 191 1.769026 TGGAGAAGAGGATGGACGAG 58.231 55.000 0.00 0.00 0.00 4.18
191 192 1.006043 TGGAGAAGAGGATGGACGAGT 59.994 52.381 0.00 0.00 0.00 4.18
192 193 2.104170 GGAGAAGAGGATGGACGAGTT 58.896 52.381 0.00 0.00 0.00 3.01
193 194 2.100087 GGAGAAGAGGATGGACGAGTTC 59.900 54.545 0.00 0.00 0.00 3.01
194 195 1.746220 AGAAGAGGATGGACGAGTTCG 59.254 52.381 0.00 0.00 46.33 3.95
206 207 0.438830 CGAGTTCGTAAGTTGGCAGC 59.561 55.000 0.00 0.00 39.48 5.25
207 208 1.508632 GAGTTCGTAAGTTGGCAGCA 58.491 50.000 3.63 0.00 39.48 4.41
208 209 1.461127 GAGTTCGTAAGTTGGCAGCAG 59.539 52.381 3.63 0.00 39.48 4.24
209 210 1.070134 AGTTCGTAAGTTGGCAGCAGA 59.930 47.619 3.63 0.00 39.48 4.26
210 211 1.461127 GTTCGTAAGTTGGCAGCAGAG 59.539 52.381 3.63 0.00 39.48 3.35
211 212 0.966179 TCGTAAGTTGGCAGCAGAGA 59.034 50.000 3.63 0.00 39.48 3.10
212 213 1.067565 TCGTAAGTTGGCAGCAGAGAG 60.068 52.381 3.63 0.00 39.48 3.20
213 214 1.082690 GTAAGTTGGCAGCAGAGAGC 58.917 55.000 3.63 0.00 46.19 4.09
227 228 5.681337 GCAGAGAGCTGTTAGTTTTTCTT 57.319 39.130 0.00 0.00 44.17 2.52
228 229 6.066054 GCAGAGAGCTGTTAGTTTTTCTTT 57.934 37.500 0.00 0.00 44.17 2.52
229 230 6.499172 GCAGAGAGCTGTTAGTTTTTCTTTT 58.501 36.000 0.00 0.00 44.17 2.27
230 231 6.975197 GCAGAGAGCTGTTAGTTTTTCTTTTT 59.025 34.615 0.00 0.00 44.17 1.94
231 232 7.166638 GCAGAGAGCTGTTAGTTTTTCTTTTTC 59.833 37.037 0.00 0.00 44.17 2.29
232 233 8.184192 CAGAGAGCTGTTAGTTTTTCTTTTTCA 58.816 33.333 0.00 0.00 37.37 2.69
233 234 8.739972 AGAGAGCTGTTAGTTTTTCTTTTTCAA 58.260 29.630 0.00 0.00 0.00 2.69
234 235 9.521503 GAGAGCTGTTAGTTTTTCTTTTTCAAT 57.478 29.630 0.00 0.00 0.00 2.57
235 236 9.875691 AGAGCTGTTAGTTTTTCTTTTTCAATT 57.124 25.926 0.00 0.00 0.00 2.32
245 246 9.891828 GTTTTTCTTTTTCAATTTTGAGGTTGT 57.108 25.926 0.00 0.00 38.61 3.32
246 247 9.890352 TTTTTCTTTTTCAATTTTGAGGTTGTG 57.110 25.926 0.00 0.00 38.61 3.33
247 248 6.660887 TCTTTTTCAATTTTGAGGTTGTGC 57.339 33.333 0.00 0.00 38.61 4.57
248 249 5.290643 TCTTTTTCAATTTTGAGGTTGTGCG 59.709 36.000 0.00 0.00 38.61 5.34
249 250 4.377839 TTTCAATTTTGAGGTTGTGCGA 57.622 36.364 0.00 0.00 38.61 5.10
250 251 3.624326 TCAATTTTGAGGTTGTGCGAG 57.376 42.857 0.00 0.00 32.50 5.03
251 252 2.053627 CAATTTTGAGGTTGTGCGAGC 58.946 47.619 0.00 0.00 0.00 5.03
252 253 1.609208 ATTTTGAGGTTGTGCGAGCT 58.391 45.000 0.00 0.00 0.00 4.09
253 254 2.248280 TTTTGAGGTTGTGCGAGCTA 57.752 45.000 0.00 0.00 0.00 3.32
254 255 1.508632 TTTGAGGTTGTGCGAGCTAC 58.491 50.000 0.00 0.00 0.00 3.58
255 256 0.679505 TTGAGGTTGTGCGAGCTACT 59.320 50.000 0.00 0.00 0.00 2.57
256 257 1.541379 TGAGGTTGTGCGAGCTACTA 58.459 50.000 0.00 0.00 0.00 1.82
257 258 1.472878 TGAGGTTGTGCGAGCTACTAG 59.527 52.381 0.00 0.00 0.00 2.57
258 259 1.473278 GAGGTTGTGCGAGCTACTAGT 59.527 52.381 0.00 0.00 0.00 2.57
259 260 2.681848 GAGGTTGTGCGAGCTACTAGTA 59.318 50.000 1.89 1.89 0.00 1.82
260 261 2.683867 AGGTTGTGCGAGCTACTAGTAG 59.316 50.000 23.25 23.25 36.29 2.57
261 262 2.422832 GGTTGTGCGAGCTACTAGTAGT 59.577 50.000 26.76 15.81 35.65 2.73
262 263 3.119566 GGTTGTGCGAGCTACTAGTAGTT 60.120 47.826 26.76 22.75 35.65 2.24
263 264 4.483311 GTTGTGCGAGCTACTAGTAGTTT 58.517 43.478 26.76 17.39 35.65 2.66
264 265 4.778534 TGTGCGAGCTACTAGTAGTTTT 57.221 40.909 26.76 15.22 35.65 2.43
265 266 5.885230 TGTGCGAGCTACTAGTAGTTTTA 57.115 39.130 26.76 11.60 35.65 1.52
266 267 6.446781 TGTGCGAGCTACTAGTAGTTTTAT 57.553 37.500 26.76 11.27 35.65 1.40
267 268 6.860080 TGTGCGAGCTACTAGTAGTTTTATT 58.140 36.000 26.76 9.47 35.65 1.40
268 269 7.988737 TGTGCGAGCTACTAGTAGTTTTATTA 58.011 34.615 26.76 9.82 35.65 0.98
269 270 8.627403 TGTGCGAGCTACTAGTAGTTTTATTAT 58.373 33.333 26.76 7.10 35.65 1.28
339 340 0.881118 TTTTTGGAGTGGATGCGAGC 59.119 50.000 0.00 0.00 0.00 5.03
340 341 0.036732 TTTTGGAGTGGATGCGAGCT 59.963 50.000 0.00 0.00 0.00 4.09
341 342 0.901827 TTTGGAGTGGATGCGAGCTA 59.098 50.000 0.00 0.00 0.00 3.32
342 343 0.461548 TTGGAGTGGATGCGAGCTAG 59.538 55.000 0.00 0.00 0.00 3.42
343 344 1.300542 GGAGTGGATGCGAGCTAGC 60.301 63.158 12.40 12.40 37.71 3.42
381 382 3.830744 AACAAAAACTTTACCCAGCCC 57.169 42.857 0.00 0.00 0.00 5.19
382 383 2.753247 ACAAAAACTTTACCCAGCCCA 58.247 42.857 0.00 0.00 0.00 5.36
383 384 3.108376 ACAAAAACTTTACCCAGCCCAA 58.892 40.909 0.00 0.00 0.00 4.12
384 385 3.519913 ACAAAAACTTTACCCAGCCCAAA 59.480 39.130 0.00 0.00 0.00 3.28
385 386 4.019231 ACAAAAACTTTACCCAGCCCAAAA 60.019 37.500 0.00 0.00 0.00 2.44
386 387 4.415881 AAAACTTTACCCAGCCCAAAAG 57.584 40.909 0.00 0.00 35.54 2.27
387 388 3.322191 AACTTTACCCAGCCCAAAAGA 57.678 42.857 0.00 0.00 33.98 2.52
388 389 3.322191 ACTTTACCCAGCCCAAAAGAA 57.678 42.857 0.00 0.00 33.98 2.52
389 390 2.963101 ACTTTACCCAGCCCAAAAGAAC 59.037 45.455 0.00 0.00 33.98 3.01
390 391 3.230976 CTTTACCCAGCCCAAAAGAACT 58.769 45.455 0.00 0.00 31.96 3.01
391 392 3.322191 TTACCCAGCCCAAAAGAACTT 57.678 42.857 0.00 0.00 0.00 2.66
392 393 1.704641 ACCCAGCCCAAAAGAACTTC 58.295 50.000 0.00 0.00 0.00 3.01
393 394 1.063266 ACCCAGCCCAAAAGAACTTCA 60.063 47.619 0.00 0.00 0.00 3.02
394 395 1.341209 CCCAGCCCAAAAGAACTTCAC 59.659 52.381 0.00 0.00 0.00 3.18
438 439 2.497770 GGTCAAGCCCATGCATGC 59.502 61.111 21.69 11.82 41.13 4.06
439 440 2.497770 GTCAAGCCCATGCATGCC 59.502 61.111 21.69 13.65 41.13 4.40
440 441 3.142162 TCAAGCCCATGCATGCCG 61.142 61.111 21.69 13.77 41.13 5.69
451 452 0.036483 TGCATGCCGTTTGAGAGCTA 60.036 50.000 16.68 0.00 0.00 3.32
452 453 0.654683 GCATGCCGTTTGAGAGCTAG 59.345 55.000 6.36 0.00 0.00 3.42
454 455 2.200067 CATGCCGTTTGAGAGCTAGAG 58.800 52.381 0.00 0.00 0.00 2.43
455 456 1.545841 TGCCGTTTGAGAGCTAGAGA 58.454 50.000 0.00 0.00 0.00 3.10
456 457 1.474478 TGCCGTTTGAGAGCTAGAGAG 59.526 52.381 0.00 0.00 0.00 3.20
457 458 1.746220 GCCGTTTGAGAGCTAGAGAGA 59.254 52.381 0.00 0.00 0.00 3.10
458 459 2.223479 GCCGTTTGAGAGCTAGAGAGAG 60.223 54.545 0.00 0.00 0.00 3.20
460 461 3.312421 CCGTTTGAGAGCTAGAGAGAGAG 59.688 52.174 0.00 0.00 0.00 3.20
474 491 2.042025 AGAGAGAGAGCCCAGCCC 60.042 66.667 0.00 0.00 0.00 5.19
475 492 3.535962 GAGAGAGAGCCCAGCCCG 61.536 72.222 0.00 0.00 0.00 6.13
502 519 1.999735 TGTGCTTAATTTCCGCGAGAG 59.000 47.619 8.23 0.00 0.00 3.20
503 520 2.268298 GTGCTTAATTTCCGCGAGAGA 58.732 47.619 8.23 0.00 0.00 3.10
516 543 1.107945 CGAGAGAAAGACCTCCTCCC 58.892 60.000 0.00 0.00 33.76 4.30
544 571 4.688419 CGCTGCCACAACCGCAAG 62.688 66.667 0.00 0.00 35.40 4.01
545 572 3.595758 GCTGCCACAACCGCAAGT 61.596 61.111 0.00 0.00 35.40 3.16
546 573 2.639286 CTGCCACAACCGCAAGTC 59.361 61.111 0.00 0.00 35.40 3.01
547 574 2.904866 TGCCACAACCGCAAGTCC 60.905 61.111 0.00 0.00 32.05 3.85
548 575 2.904866 GCCACAACCGCAAGTCCA 60.905 61.111 0.00 0.00 0.00 4.02
549 576 3.030652 CCACAACCGCAAGTCCAC 58.969 61.111 0.00 0.00 0.00 4.02
550 577 1.525995 CCACAACCGCAAGTCCACT 60.526 57.895 0.00 0.00 0.00 4.00
551 578 1.507141 CCACAACCGCAAGTCCACTC 61.507 60.000 0.00 0.00 0.00 3.51
552 579 1.594293 ACAACCGCAAGTCCACTCG 60.594 57.895 0.00 0.00 0.00 4.18
553 580 2.665185 AACCGCAAGTCCACTCGC 60.665 61.111 0.00 0.00 0.00 5.03
554 581 3.165160 AACCGCAAGTCCACTCGCT 62.165 57.895 0.00 0.00 0.00 4.93
555 582 2.811317 CCGCAAGTCCACTCGCTC 60.811 66.667 0.00 0.00 0.00 5.03
622 679 4.235731 GGCATCCCGGACGAAATT 57.764 55.556 0.73 0.00 0.00 1.82
638 695 3.990469 CGAAATTACCATCTGGGAGATCG 59.010 47.826 0.54 0.37 41.15 3.69
670 727 2.529389 ACCAAAGCCCTCCTCCGT 60.529 61.111 0.00 0.00 0.00 4.69
961 1077 2.683859 CCGGCGACTCGTCAGTACA 61.684 63.158 9.30 0.00 30.63 2.90
1182 1309 1.072331 GAACTGATATGCATCCCCGGT 59.928 52.381 0.19 1.78 0.00 5.28
1343 1473 3.591196 TGGCATGTCCACTTTTAATGC 57.409 42.857 4.93 0.00 40.72 3.56
1350 1480 3.058293 TGTCCACTTTTAATGCTGAAGCG 60.058 43.478 0.00 0.00 45.83 4.68
1351 1481 3.188460 GTCCACTTTTAATGCTGAAGCGA 59.812 43.478 0.00 0.00 45.83 4.93
1352 1482 3.188460 TCCACTTTTAATGCTGAAGCGAC 59.812 43.478 0.00 0.00 45.83 5.19
1353 1483 3.058293 CCACTTTTAATGCTGAAGCGACA 60.058 43.478 0.00 0.00 45.83 4.35
1354 1484 3.908382 CACTTTTAATGCTGAAGCGACAC 59.092 43.478 0.00 0.00 45.83 3.67
1360 1499 1.308047 TGCTGAAGCGACACATGTTT 58.692 45.000 0.00 0.00 45.83 2.83
1504 1646 2.435059 GGGCCGAGTCTTGTGAGC 60.435 66.667 0.00 0.00 0.00 4.26
1551 1696 6.500684 TTTGATGATTGGCTACTTCAAGTC 57.499 37.500 0.00 0.00 33.86 3.01
1648 1793 7.859325 ACTCTAGTTTTGCACACTTTCTTTA 57.141 32.000 3.08 0.00 0.00 1.85
1675 1820 7.328493 CGACACTAGAAGATTATGTTGTGAACA 59.672 37.037 0.00 0.00 46.94 3.18
1801 1948 3.612423 GCCGGTTAGTTTCATTTTGATGC 59.388 43.478 1.90 0.00 0.00 3.91
1802 1949 4.173256 CCGGTTAGTTTCATTTTGATGCC 58.827 43.478 0.00 0.00 0.00 4.40
1849 1996 2.669113 CGACTGTTTCATGGTTGCATGG 60.669 50.000 0.00 0.00 33.61 3.66
1864 2011 5.519927 GGTTGCATGGAATTTATACTTGTGC 59.480 40.000 1.94 0.00 0.00 4.57
1904 2051 1.678635 TGGCTAGCATGTTGGTGCC 60.679 57.895 18.24 13.28 46.19 5.01
1940 3890 7.678194 TTCGTTTTGTTAAGCTTTTGAGATG 57.322 32.000 3.20 0.00 0.00 2.90
1960 3912 1.135721 GGTTGCCAATTGATCTGCCTC 59.864 52.381 7.12 0.00 0.00 4.70
1975 3927 1.000955 TGCCTCGTCTCTGTTTTCCTC 59.999 52.381 0.00 0.00 0.00 3.71
2156 4110 4.610945 AGCAAGTTGAACCTCATTTTTCG 58.389 39.130 7.16 0.00 0.00 3.46
2249 4206 6.885918 TGCAATTCATTCTTCTCCAAGTATCA 59.114 34.615 0.00 0.00 0.00 2.15
2275 4232 3.428045 GCATTGCATCTGGTTAGGTGTTC 60.428 47.826 3.15 0.00 37.37 3.18
2284 4241 4.133820 CTGGTTAGGTGTTCACATGTTCA 58.866 43.478 0.00 0.00 0.00 3.18
2285 4242 4.133820 TGGTTAGGTGTTCACATGTTCAG 58.866 43.478 0.00 0.00 0.00 3.02
2286 4243 4.134563 GGTTAGGTGTTCACATGTTCAGT 58.865 43.478 0.00 0.00 0.00 3.41
2288 4245 5.761234 GGTTAGGTGTTCACATGTTCAGTTA 59.239 40.000 0.00 0.00 0.00 2.24
2291 4248 8.656849 GTTAGGTGTTCACATGTTCAGTTATAG 58.343 37.037 0.00 0.00 0.00 1.31
2295 4252 7.360946 GGTGTTCACATGTTCAGTTATAGTTCC 60.361 40.741 0.00 0.00 0.00 3.62
2296 4253 6.367695 TGTTCACATGTTCAGTTATAGTTCCG 59.632 38.462 0.00 0.00 0.00 4.30
2297 4254 6.032956 TCACATGTTCAGTTATAGTTCCGT 57.967 37.500 0.00 0.00 0.00 4.69
2298 4255 6.097356 TCACATGTTCAGTTATAGTTCCGTC 58.903 40.000 0.00 0.00 0.00 4.79
2299 4256 6.071560 TCACATGTTCAGTTATAGTTCCGTCT 60.072 38.462 0.00 0.00 0.00 4.18
2300 4257 6.590292 CACATGTTCAGTTATAGTTCCGTCTT 59.410 38.462 0.00 0.00 0.00 3.01
2301 4258 6.812160 ACATGTTCAGTTATAGTTCCGTCTTC 59.188 38.462 0.00 0.00 0.00 2.87
2302 4259 6.585695 TGTTCAGTTATAGTTCCGTCTTCT 57.414 37.500 0.00 0.00 0.00 2.85
2303 4260 6.989659 TGTTCAGTTATAGTTCCGTCTTCTT 58.010 36.000 0.00 0.00 0.00 2.52
2304 4261 7.439381 TGTTCAGTTATAGTTCCGTCTTCTTT 58.561 34.615 0.00 0.00 0.00 2.52
2305 4262 7.384115 TGTTCAGTTATAGTTCCGTCTTCTTTG 59.616 37.037 0.00 0.00 0.00 2.77
2306 4263 6.989659 TCAGTTATAGTTCCGTCTTCTTTGT 58.010 36.000 0.00 0.00 0.00 2.83
2307 4264 7.088905 TCAGTTATAGTTCCGTCTTCTTTGTC 58.911 38.462 0.00 0.00 0.00 3.18
2308 4265 6.033619 CAGTTATAGTTCCGTCTTCTTTGTCG 59.966 42.308 0.00 0.00 0.00 4.35
2309 4266 1.499049 AGTTCCGTCTTCTTTGTCGC 58.501 50.000 0.00 0.00 0.00 5.19
2310 4267 1.068741 AGTTCCGTCTTCTTTGTCGCT 59.931 47.619 0.00 0.00 0.00 4.93
2347 4304 4.593206 TCTGTACTCAGGTTCCAGATTGTT 59.407 41.667 0.00 0.00 41.59 2.83
2358 4315 3.766545 TCCAGATTGTTTTCCCCTTCAG 58.233 45.455 0.00 0.00 0.00 3.02
2360 4317 4.044571 TCCAGATTGTTTTCCCCTTCAGAT 59.955 41.667 0.00 0.00 0.00 2.90
2366 4323 5.319043 TGTTTTCCCCTTCAGATACTGTT 57.681 39.130 0.00 0.00 32.61 3.16
2370 4327 7.236019 TGTTTTCCCCTTCAGATACTGTTACTA 59.764 37.037 0.00 0.00 32.61 1.82
2378 4335 7.256119 CCTTCAGATACTGTTACTATCAGCCAT 60.256 40.741 0.00 0.00 36.50 4.40
2385 4342 9.983024 ATACTGTTACTATCAGCCATATCTAGT 57.017 33.333 0.00 0.00 36.50 2.57
2389 4346 7.336176 TGTTACTATCAGCCATATCTAGTACCG 59.664 40.741 0.00 0.00 0.00 4.02
2395 4352 3.087031 GCCATATCTAGTACCGCTGGTA 58.913 50.000 3.72 3.72 37.09 3.25
2431 4388 6.088824 GTCTCAAAGATTTGTGTGGCAATAG 58.911 40.000 5.29 0.00 39.18 1.73
2432 4389 4.808558 TCAAAGATTTGTGTGGCAATAGC 58.191 39.130 5.29 0.00 39.18 2.97
2433 4390 3.928375 CAAAGATTTGTGTGGCAATAGCC 59.072 43.478 0.00 0.00 45.84 3.93
2447 4404 4.712763 GCAATAGCCGAAATACATACAGC 58.287 43.478 0.00 0.00 33.58 4.40
2455 4412 6.037172 AGCCGAAATACATACAGCTGTAAAAG 59.963 38.462 29.26 22.51 35.37 2.27
2456 4413 6.715464 CCGAAATACATACAGCTGTAAAAGG 58.285 40.000 29.26 20.04 35.37 3.11
2457 4414 6.238374 CCGAAATACATACAGCTGTAAAAGGG 60.238 42.308 29.26 17.84 35.37 3.95
2458 4415 6.238374 CGAAATACATACAGCTGTAAAAGGGG 60.238 42.308 29.26 16.29 35.37 4.79
2463 4420 2.345560 ACAGCTGTAAAAGGGGGTAGT 58.654 47.619 20.16 0.00 0.00 2.73
2474 4431 2.986050 AGGGGGTAGTCTGAAAAGTCA 58.014 47.619 0.00 0.00 0.00 3.41
2488 4445 8.295288 GTCTGAAAAGTCATTCTGATCATTTGT 58.705 33.333 0.00 0.00 38.81 2.83
2492 4449 9.346725 GAAAAGTCATTCTGATCATTTGTTACC 57.653 33.333 0.00 0.00 0.00 2.85
2497 4454 3.669536 TCTGATCATTTGTTACCGCACA 58.330 40.909 0.00 0.00 0.00 4.57
2498 4455 3.684305 TCTGATCATTTGTTACCGCACAG 59.316 43.478 0.00 0.00 0.00 3.66
2500 4457 4.260985 TGATCATTTGTTACCGCACAGAT 58.739 39.130 0.00 0.00 0.00 2.90
2528 4489 2.159198 CCATTGCAGGGTAATTGCTCAC 60.159 50.000 0.00 0.00 42.02 3.51
2545 4506 1.672356 ACCCGCTCACATCACTTGC 60.672 57.895 0.00 0.00 0.00 4.01
2552 4513 2.915349 CTCACATCACTTGCAGGCTAT 58.085 47.619 0.00 0.00 0.00 2.97
2572 4533 6.374333 GGCTATCCACAATCAGTTTTCTGTTA 59.626 38.462 0.00 0.00 46.98 2.41
2604 4571 2.032549 GGCATCTGCGTGAATATGTGAC 60.033 50.000 0.00 0.00 43.26 3.67
2606 4573 3.544834 GCATCTGCGTGAATATGTGACAC 60.545 47.826 0.00 0.00 0.00 3.67
2611 4578 6.801575 TCTGCGTGAATATGTGACACTATTA 58.198 36.000 7.20 0.00 33.13 0.98
2652 4625 6.089820 CAGTATAGCAAAGTGTGGCAAAAATG 59.910 38.462 0.00 0.00 0.00 2.32
2653 4626 3.540314 AGCAAAGTGTGGCAAAAATGA 57.460 38.095 0.00 0.00 0.00 2.57
2654 4627 4.075963 AGCAAAGTGTGGCAAAAATGAT 57.924 36.364 0.00 0.00 0.00 2.45
2655 4628 3.810941 AGCAAAGTGTGGCAAAAATGATG 59.189 39.130 0.00 0.00 0.00 3.07
2656 4629 3.058777 GCAAAGTGTGGCAAAAATGATGG 60.059 43.478 0.00 0.00 0.00 3.51
2657 4630 4.378774 CAAAGTGTGGCAAAAATGATGGA 58.621 39.130 0.00 0.00 0.00 3.41
2658 4631 3.665745 AGTGTGGCAAAAATGATGGAC 57.334 42.857 0.00 0.00 0.00 4.02
2659 4632 2.964464 AGTGTGGCAAAAATGATGGACA 59.036 40.909 0.00 0.00 0.00 4.02
2660 4633 3.006110 AGTGTGGCAAAAATGATGGACAG 59.994 43.478 0.00 0.00 0.00 3.51
2661 4634 2.288948 TGTGGCAAAAATGATGGACAGC 60.289 45.455 0.00 0.00 0.00 4.40
2662 4635 1.969208 TGGCAAAAATGATGGACAGCA 59.031 42.857 0.00 0.00 0.00 4.41
2663 4636 2.288948 TGGCAAAAATGATGGACAGCAC 60.289 45.455 0.00 0.00 0.00 4.40
2664 4637 2.288948 GGCAAAAATGATGGACAGCACA 60.289 45.455 0.00 0.00 0.00 4.57
2665 4638 3.592059 GCAAAAATGATGGACAGCACAT 58.408 40.909 0.00 0.00 0.00 3.21
2666 4639 3.369756 GCAAAAATGATGGACAGCACATG 59.630 43.478 0.00 0.00 0.00 3.21
2667 4640 4.811908 CAAAAATGATGGACAGCACATGA 58.188 39.130 0.00 0.00 0.00 3.07
2668 4641 5.231702 CAAAAATGATGGACAGCACATGAA 58.768 37.500 0.00 0.00 0.00 2.57
2669 4642 5.471556 AAAATGATGGACAGCACATGAAA 57.528 34.783 0.00 0.00 0.00 2.69
2670 4643 5.471556 AAATGATGGACAGCACATGAAAA 57.528 34.783 0.00 0.00 0.00 2.29
2671 4644 3.921119 TGATGGACAGCACATGAAAAC 57.079 42.857 0.00 0.00 0.00 2.43
2672 4645 3.220940 TGATGGACAGCACATGAAAACA 58.779 40.909 0.00 0.00 0.00 2.83
2673 4646 3.635836 TGATGGACAGCACATGAAAACAA 59.364 39.130 0.00 0.00 0.00 2.83
2674 4647 3.713858 TGGACAGCACATGAAAACAAG 57.286 42.857 0.00 0.00 0.00 3.16
2675 4648 3.286353 TGGACAGCACATGAAAACAAGA 58.714 40.909 0.00 0.00 0.00 3.02
2676 4649 3.890756 TGGACAGCACATGAAAACAAGAT 59.109 39.130 0.00 0.00 0.00 2.40
2677 4650 4.341806 TGGACAGCACATGAAAACAAGATT 59.658 37.500 0.00 0.00 0.00 2.40
2678 4651 5.163426 TGGACAGCACATGAAAACAAGATTT 60.163 36.000 0.00 0.00 0.00 2.17
2679 4652 5.176223 GGACAGCACATGAAAACAAGATTTG 59.824 40.000 0.00 0.00 0.00 2.32
2680 4653 5.904941 ACAGCACATGAAAACAAGATTTGA 58.095 33.333 0.00 0.00 0.00 2.69
2681 4654 6.518493 ACAGCACATGAAAACAAGATTTGAT 58.482 32.000 0.00 0.00 0.00 2.57
2682 4655 7.660112 ACAGCACATGAAAACAAGATTTGATA 58.340 30.769 0.00 0.00 0.00 2.15
2683 4656 8.308931 ACAGCACATGAAAACAAGATTTGATAT 58.691 29.630 0.00 0.00 0.00 1.63
2684 4657 9.791820 CAGCACATGAAAACAAGATTTGATATA 57.208 29.630 0.00 0.00 0.00 0.86
2686 4659 8.749499 GCACATGAAAACAAGATTTGATATAGC 58.251 33.333 0.00 0.00 0.00 2.97
2687 4660 9.791820 CACATGAAAACAAGATTTGATATAGCA 57.208 29.630 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.519032 TCATTTATTTTGAAACGAAGGGAGT 57.481 32.000 0.00 0.00 0.00 3.85
1 2 8.986477 AATCATTTATTTTGAAACGAAGGGAG 57.014 30.769 0.00 0.00 0.00 4.30
2 3 8.580720 TGAATCATTTATTTTGAAACGAAGGGA 58.419 29.630 0.00 0.00 0.00 4.20
3 4 8.755696 TGAATCATTTATTTTGAAACGAAGGG 57.244 30.769 0.00 0.00 0.00 3.95
63 64 9.956720 CTCTGTTTCAAAATAAATGACTCAACT 57.043 29.630 0.00 0.00 0.00 3.16
64 65 9.185192 CCTCTGTTTCAAAATAAATGACTCAAC 57.815 33.333 0.00 0.00 0.00 3.18
65 66 8.359642 CCCTCTGTTTCAAAATAAATGACTCAA 58.640 33.333 0.00 0.00 0.00 3.02
66 67 7.723616 TCCCTCTGTTTCAAAATAAATGACTCA 59.276 33.333 0.00 0.00 0.00 3.41
67 68 8.110860 TCCCTCTGTTTCAAAATAAATGACTC 57.889 34.615 0.00 0.00 0.00 3.36
68 69 7.725844 ACTCCCTCTGTTTCAAAATAAATGACT 59.274 33.333 0.00 0.00 0.00 3.41
69 70 7.886338 ACTCCCTCTGTTTCAAAATAAATGAC 58.114 34.615 0.00 0.00 0.00 3.06
70 71 9.010029 GTACTCCCTCTGTTTCAAAATAAATGA 57.990 33.333 0.00 0.00 0.00 2.57
71 72 8.244113 GGTACTCCCTCTGTTTCAAAATAAATG 58.756 37.037 0.00 0.00 0.00 2.32
72 73 8.170730 AGGTACTCCCTCTGTTTCAAAATAAAT 58.829 33.333 0.00 0.00 40.71 1.40
73 74 7.523415 AGGTACTCCCTCTGTTTCAAAATAAA 58.477 34.615 0.00 0.00 40.71 1.40
74 75 7.086685 AGGTACTCCCTCTGTTTCAAAATAA 57.913 36.000 0.00 0.00 40.71 1.40
75 76 6.697641 AGGTACTCCCTCTGTTTCAAAATA 57.302 37.500 0.00 0.00 40.71 1.40
76 77 5.584551 AGGTACTCCCTCTGTTTCAAAAT 57.415 39.130 0.00 0.00 40.71 1.82
77 78 5.382664 AAGGTACTCCCTCTGTTTCAAAA 57.617 39.130 0.00 0.00 45.47 2.44
78 79 5.382664 AAAGGTACTCCCTCTGTTTCAAA 57.617 39.130 0.00 0.00 45.47 2.69
79 80 5.130350 CAAAAGGTACTCCCTCTGTTTCAA 58.870 41.667 0.00 0.00 45.47 2.69
80 81 4.165372 ACAAAAGGTACTCCCTCTGTTTCA 59.835 41.667 0.00 0.00 45.47 2.69
81 82 4.715713 ACAAAAGGTACTCCCTCTGTTTC 58.284 43.478 0.00 0.00 45.47 2.78
82 83 4.790718 ACAAAAGGTACTCCCTCTGTTT 57.209 40.909 0.00 0.00 45.47 2.83
83 84 4.412528 AGAACAAAAGGTACTCCCTCTGTT 59.587 41.667 7.95 7.95 45.47 3.16
84 85 3.974642 AGAACAAAAGGTACTCCCTCTGT 59.025 43.478 0.00 0.00 45.47 3.41
85 86 4.284746 AGAGAACAAAAGGTACTCCCTCTG 59.715 45.833 0.00 0.00 45.47 3.35
86 87 4.494591 AGAGAACAAAAGGTACTCCCTCT 58.505 43.478 0.00 0.00 45.47 3.69
87 88 4.893829 AGAGAACAAAAGGTACTCCCTC 57.106 45.455 0.00 0.00 45.47 4.30
89 90 6.238953 GGAAAAAGAGAACAAAAGGTACTCCC 60.239 42.308 0.00 0.00 38.49 4.30
90 91 6.238953 GGGAAAAAGAGAACAAAAGGTACTCC 60.239 42.308 0.00 0.00 38.49 3.85
91 92 6.546403 AGGGAAAAAGAGAACAAAAGGTACTC 59.454 38.462 0.00 0.00 38.49 2.59
93 94 6.320418 TGAGGGAAAAAGAGAACAAAAGGTAC 59.680 38.462 0.00 0.00 0.00 3.34
94 95 6.428295 TGAGGGAAAAAGAGAACAAAAGGTA 58.572 36.000 0.00 0.00 0.00 3.08
95 96 5.269189 TGAGGGAAAAAGAGAACAAAAGGT 58.731 37.500 0.00 0.00 0.00 3.50
96 97 5.852282 TGAGGGAAAAAGAGAACAAAAGG 57.148 39.130 0.00 0.00 0.00 3.11
97 98 8.722480 AATTTGAGGGAAAAAGAGAACAAAAG 57.278 30.769 0.00 0.00 31.61 2.27
100 101 9.981114 GAATAATTTGAGGGAAAAAGAGAACAA 57.019 29.630 0.00 0.00 0.00 2.83
101 102 8.296713 CGAATAATTTGAGGGAAAAAGAGAACA 58.703 33.333 0.00 0.00 0.00 3.18
102 103 8.512138 TCGAATAATTTGAGGGAAAAAGAGAAC 58.488 33.333 0.00 0.00 0.00 3.01
103 104 8.512138 GTCGAATAATTTGAGGGAAAAAGAGAA 58.488 33.333 0.00 0.00 0.00 2.87
104 105 7.663905 TGTCGAATAATTTGAGGGAAAAAGAGA 59.336 33.333 0.00 0.00 0.00 3.10
105 106 7.816640 TGTCGAATAATTTGAGGGAAAAAGAG 58.183 34.615 0.00 0.00 0.00 2.85
106 107 7.753309 TGTCGAATAATTTGAGGGAAAAAGA 57.247 32.000 0.00 0.00 0.00 2.52
107 108 8.986477 AATGTCGAATAATTTGAGGGAAAAAG 57.014 30.769 0.00 0.00 0.00 2.27
108 109 9.418045 GAAATGTCGAATAATTTGAGGGAAAAA 57.582 29.630 6.69 0.00 0.00 1.94
109 110 8.980143 GAAATGTCGAATAATTTGAGGGAAAA 57.020 30.769 6.69 0.00 0.00 2.29
127 128 1.442769 TTCTGCTCTGGCGAAATGTC 58.557 50.000 0.00 0.00 42.25 3.06
128 129 2.119801 ATTCTGCTCTGGCGAAATGT 57.880 45.000 0.00 0.00 42.25 2.71
129 130 3.242870 GGTAATTCTGCTCTGGCGAAATG 60.243 47.826 0.00 0.00 42.25 2.32
130 131 2.945668 GGTAATTCTGCTCTGGCGAAAT 59.054 45.455 0.00 0.00 42.25 2.17
131 132 2.290008 TGGTAATTCTGCTCTGGCGAAA 60.290 45.455 0.00 0.00 42.25 3.46
132 133 1.277842 TGGTAATTCTGCTCTGGCGAA 59.722 47.619 0.00 0.00 42.25 4.70
133 134 0.901827 TGGTAATTCTGCTCTGGCGA 59.098 50.000 0.00 0.00 42.25 5.54
134 135 1.667724 CTTGGTAATTCTGCTCTGGCG 59.332 52.381 0.00 0.00 42.25 5.69
135 136 2.019984 CCTTGGTAATTCTGCTCTGGC 58.980 52.381 0.00 0.00 39.26 4.85
136 137 2.019984 GCCTTGGTAATTCTGCTCTGG 58.980 52.381 0.00 0.00 0.00 3.86
137 138 2.715046 TGCCTTGGTAATTCTGCTCTG 58.285 47.619 0.00 0.00 0.00 3.35
138 139 3.285484 CATGCCTTGGTAATTCTGCTCT 58.715 45.455 0.00 0.00 0.00 4.09
139 140 2.223665 GCATGCCTTGGTAATTCTGCTC 60.224 50.000 6.36 0.00 0.00 4.26
140 141 1.753073 GCATGCCTTGGTAATTCTGCT 59.247 47.619 6.36 0.00 0.00 4.24
141 142 1.753073 AGCATGCCTTGGTAATTCTGC 59.247 47.619 15.66 0.00 33.29 4.26
142 143 2.100252 CCAGCATGCCTTGGTAATTCTG 59.900 50.000 15.66 0.76 33.85 3.02
143 144 2.381911 CCAGCATGCCTTGGTAATTCT 58.618 47.619 15.66 0.00 33.85 2.40
144 145 1.410153 CCCAGCATGCCTTGGTAATTC 59.590 52.381 21.00 0.00 33.85 2.17
145 146 1.273211 ACCCAGCATGCCTTGGTAATT 60.273 47.619 21.00 3.77 37.79 1.40
146 147 0.336048 ACCCAGCATGCCTTGGTAAT 59.664 50.000 21.00 6.93 37.79 1.89
147 148 0.611618 CACCCAGCATGCCTTGGTAA 60.612 55.000 21.00 0.00 37.48 2.85
148 149 1.001020 CACCCAGCATGCCTTGGTA 60.001 57.895 21.00 0.00 37.48 3.25
149 150 2.283388 CACCCAGCATGCCTTGGT 60.283 61.111 21.00 18.33 40.06 3.67
150 151 2.036098 TCACCCAGCATGCCTTGG 59.964 61.111 15.66 16.50 32.64 3.61
151 152 2.345760 GGTCACCCAGCATGCCTTG 61.346 63.158 15.66 7.05 31.97 3.61
152 153 2.036256 GGTCACCCAGCATGCCTT 59.964 61.111 15.66 0.00 31.97 4.35
153 154 2.619446 ATGGTCACCCAGCATGCCT 61.619 57.895 15.66 0.00 46.15 4.75
154 155 2.043652 ATGGTCACCCAGCATGCC 60.044 61.111 15.66 0.00 46.15 4.40
157 158 0.915872 TCTCCATGGTCACCCAGCAT 60.916 55.000 12.58 0.00 46.15 3.79
158 159 1.133181 TTCTCCATGGTCACCCAGCA 61.133 55.000 12.58 0.00 46.15 4.41
159 160 0.393537 CTTCTCCATGGTCACCCAGC 60.394 60.000 12.58 0.00 46.15 4.85
160 161 1.209019 CTCTTCTCCATGGTCACCCAG 59.791 57.143 12.58 0.00 46.15 4.45
162 163 0.543749 CCTCTTCTCCATGGTCACCC 59.456 60.000 12.58 0.00 0.00 4.61
163 164 1.573108 TCCTCTTCTCCATGGTCACC 58.427 55.000 12.58 0.00 0.00 4.02
164 165 2.158842 CCATCCTCTTCTCCATGGTCAC 60.159 54.545 12.58 0.00 32.49 3.67
165 166 2.121948 CCATCCTCTTCTCCATGGTCA 58.878 52.381 12.58 0.00 32.49 4.02
166 167 2.103941 GTCCATCCTCTTCTCCATGGTC 59.896 54.545 12.58 0.00 37.62 4.02
167 168 2.122768 GTCCATCCTCTTCTCCATGGT 58.877 52.381 12.58 0.00 37.62 3.55
168 169 1.069823 CGTCCATCCTCTTCTCCATGG 59.930 57.143 4.97 4.97 37.70 3.66
169 170 2.034878 TCGTCCATCCTCTTCTCCATG 58.965 52.381 0.00 0.00 0.00 3.66
170 171 2.315176 CTCGTCCATCCTCTTCTCCAT 58.685 52.381 0.00 0.00 0.00 3.41
171 172 1.006043 ACTCGTCCATCCTCTTCTCCA 59.994 52.381 0.00 0.00 0.00 3.86
172 173 1.770294 ACTCGTCCATCCTCTTCTCC 58.230 55.000 0.00 0.00 0.00 3.71
173 174 2.223386 CGAACTCGTCCATCCTCTTCTC 60.223 54.545 0.00 0.00 34.11 2.87
174 175 1.746220 CGAACTCGTCCATCCTCTTCT 59.254 52.381 0.00 0.00 34.11 2.85
175 176 2.196295 CGAACTCGTCCATCCTCTTC 57.804 55.000 0.00 0.00 34.11 2.87
187 188 0.438830 GCTGCCAACTTACGAACTCG 59.561 55.000 0.00 0.00 46.33 4.18
188 189 1.461127 CTGCTGCCAACTTACGAACTC 59.539 52.381 0.00 0.00 0.00 3.01
189 190 1.070134 TCTGCTGCCAACTTACGAACT 59.930 47.619 0.00 0.00 0.00 3.01
190 191 1.461127 CTCTGCTGCCAACTTACGAAC 59.539 52.381 0.00 0.00 0.00 3.95
191 192 1.343142 TCTCTGCTGCCAACTTACGAA 59.657 47.619 0.00 0.00 0.00 3.85
192 193 0.966179 TCTCTGCTGCCAACTTACGA 59.034 50.000 0.00 0.00 0.00 3.43
193 194 1.354040 CTCTCTGCTGCCAACTTACG 58.646 55.000 0.00 0.00 0.00 3.18
194 195 1.082690 GCTCTCTGCTGCCAACTTAC 58.917 55.000 0.00 0.00 38.95 2.34
195 196 3.540211 GCTCTCTGCTGCCAACTTA 57.460 52.632 0.00 0.00 38.95 2.24
196 197 4.393693 GCTCTCTGCTGCCAACTT 57.606 55.556 0.00 0.00 38.95 2.66
205 206 5.681337 AAGAAAAACTAACAGCTCTCTGC 57.319 39.130 0.00 0.00 44.10 4.26
206 207 8.184192 TGAAAAAGAAAAACTAACAGCTCTCTG 58.816 33.333 0.00 0.00 45.71 3.35
207 208 8.281212 TGAAAAAGAAAAACTAACAGCTCTCT 57.719 30.769 0.00 0.00 0.00 3.10
208 209 8.911247 TTGAAAAAGAAAAACTAACAGCTCTC 57.089 30.769 0.00 0.00 0.00 3.20
209 210 9.875691 AATTGAAAAAGAAAAACTAACAGCTCT 57.124 25.926 0.00 0.00 0.00 4.09
219 220 9.891828 ACAACCTCAAAATTGAAAAAGAAAAAC 57.108 25.926 0.00 0.00 36.64 2.43
220 221 9.890352 CACAACCTCAAAATTGAAAAAGAAAAA 57.110 25.926 0.00 0.00 36.64 1.94
221 222 8.020244 GCACAACCTCAAAATTGAAAAAGAAAA 58.980 29.630 0.00 0.00 36.64 2.29
222 223 7.525759 GCACAACCTCAAAATTGAAAAAGAAA 58.474 30.769 0.00 0.00 36.64 2.52
223 224 6.183360 CGCACAACCTCAAAATTGAAAAAGAA 60.183 34.615 0.00 0.00 36.64 2.52
224 225 5.290643 CGCACAACCTCAAAATTGAAAAAGA 59.709 36.000 0.00 0.00 36.64 2.52
225 226 5.290643 TCGCACAACCTCAAAATTGAAAAAG 59.709 36.000 0.00 0.00 36.64 2.27
226 227 5.171476 TCGCACAACCTCAAAATTGAAAAA 58.829 33.333 0.00 0.00 36.64 1.94
227 228 4.748892 TCGCACAACCTCAAAATTGAAAA 58.251 34.783 0.00 0.00 36.64 2.29
228 229 4.358851 CTCGCACAACCTCAAAATTGAAA 58.641 39.130 0.00 0.00 36.64 2.69
229 230 3.795150 GCTCGCACAACCTCAAAATTGAA 60.795 43.478 0.00 0.00 36.64 2.69
230 231 2.287547 GCTCGCACAACCTCAAAATTGA 60.288 45.455 0.00 0.00 35.57 2.57
231 232 2.053627 GCTCGCACAACCTCAAAATTG 58.946 47.619 0.00 0.00 0.00 2.32
232 233 1.956477 AGCTCGCACAACCTCAAAATT 59.044 42.857 0.00 0.00 0.00 1.82
233 234 1.609208 AGCTCGCACAACCTCAAAAT 58.391 45.000 0.00 0.00 0.00 1.82
234 235 1.871039 GTAGCTCGCACAACCTCAAAA 59.129 47.619 0.00 0.00 0.00 2.44
235 236 1.070134 AGTAGCTCGCACAACCTCAAA 59.930 47.619 0.00 0.00 0.00 2.69
236 237 0.679505 AGTAGCTCGCACAACCTCAA 59.320 50.000 0.00 0.00 0.00 3.02
237 238 1.472878 CTAGTAGCTCGCACAACCTCA 59.527 52.381 0.00 0.00 0.00 3.86
238 239 1.473278 ACTAGTAGCTCGCACAACCTC 59.527 52.381 0.00 0.00 0.00 3.85
239 240 1.546961 ACTAGTAGCTCGCACAACCT 58.453 50.000 0.00 0.00 0.00 3.50
240 241 2.422832 ACTACTAGTAGCTCGCACAACC 59.577 50.000 26.54 0.00 36.66 3.77
241 242 3.761311 ACTACTAGTAGCTCGCACAAC 57.239 47.619 26.54 0.00 36.66 3.32
242 243 4.778534 AAACTACTAGTAGCTCGCACAA 57.221 40.909 26.54 0.00 36.66 3.33
243 244 4.778534 AAAACTACTAGTAGCTCGCACA 57.221 40.909 26.54 0.00 36.66 4.57
320 321 0.881118 GCTCGCATCCACTCCAAAAA 59.119 50.000 0.00 0.00 0.00 1.94
321 322 0.036732 AGCTCGCATCCACTCCAAAA 59.963 50.000 0.00 0.00 0.00 2.44
322 323 0.901827 TAGCTCGCATCCACTCCAAA 59.098 50.000 0.00 0.00 0.00 3.28
323 324 0.461548 CTAGCTCGCATCCACTCCAA 59.538 55.000 0.00 0.00 0.00 3.53
324 325 2.021068 GCTAGCTCGCATCCACTCCA 62.021 60.000 7.70 0.00 0.00 3.86
325 326 1.300542 GCTAGCTCGCATCCACTCC 60.301 63.158 7.70 0.00 0.00 3.85
326 327 0.597118 CTGCTAGCTCGCATCCACTC 60.597 60.000 13.94 0.00 39.52 3.51
327 328 1.039785 TCTGCTAGCTCGCATCCACT 61.040 55.000 13.94 0.00 39.52 4.00
328 329 0.033228 ATCTGCTAGCTCGCATCCAC 59.967 55.000 13.94 0.00 39.52 4.02
329 330 0.755079 AATCTGCTAGCTCGCATCCA 59.245 50.000 13.94 1.36 39.52 3.41
330 331 1.876322 AAATCTGCTAGCTCGCATCC 58.124 50.000 13.94 0.00 39.52 3.51
331 332 3.959573 AAAAATCTGCTAGCTCGCATC 57.040 42.857 13.94 0.00 39.52 3.91
358 359 4.944930 GGGCTGGGTAAAGTTTTTGTTTTT 59.055 37.500 0.00 0.00 0.00 1.94
359 360 4.019231 TGGGCTGGGTAAAGTTTTTGTTTT 60.019 37.500 0.00 0.00 0.00 2.43
360 361 3.519913 TGGGCTGGGTAAAGTTTTTGTTT 59.480 39.130 0.00 0.00 0.00 2.83
361 362 3.108376 TGGGCTGGGTAAAGTTTTTGTT 58.892 40.909 0.00 0.00 0.00 2.83
362 363 2.753247 TGGGCTGGGTAAAGTTTTTGT 58.247 42.857 0.00 0.00 0.00 2.83
363 364 3.828875 TTGGGCTGGGTAAAGTTTTTG 57.171 42.857 0.00 0.00 0.00 2.44
364 365 4.471747 TCTTTTGGGCTGGGTAAAGTTTTT 59.528 37.500 0.00 0.00 0.00 1.94
365 366 4.034410 TCTTTTGGGCTGGGTAAAGTTTT 58.966 39.130 0.00 0.00 0.00 2.43
366 367 3.648739 TCTTTTGGGCTGGGTAAAGTTT 58.351 40.909 0.00 0.00 0.00 2.66
367 368 3.322191 TCTTTTGGGCTGGGTAAAGTT 57.678 42.857 0.00 0.00 0.00 2.66
368 369 2.963101 GTTCTTTTGGGCTGGGTAAAGT 59.037 45.455 0.00 0.00 0.00 2.66
369 370 3.230976 AGTTCTTTTGGGCTGGGTAAAG 58.769 45.455 0.00 0.00 0.00 1.85
370 371 3.322191 AGTTCTTTTGGGCTGGGTAAA 57.678 42.857 0.00 0.00 0.00 2.01
371 372 3.227614 GAAGTTCTTTTGGGCTGGGTAA 58.772 45.455 0.00 0.00 0.00 2.85
372 373 2.175931 TGAAGTTCTTTTGGGCTGGGTA 59.824 45.455 4.17 0.00 0.00 3.69
373 374 1.063266 TGAAGTTCTTTTGGGCTGGGT 60.063 47.619 4.17 0.00 0.00 4.51
374 375 1.341209 GTGAAGTTCTTTTGGGCTGGG 59.659 52.381 4.17 0.00 0.00 4.45
375 376 1.341209 GGTGAAGTTCTTTTGGGCTGG 59.659 52.381 4.17 0.00 0.00 4.85
376 377 2.031120 TGGTGAAGTTCTTTTGGGCTG 58.969 47.619 4.17 0.00 0.00 4.85
377 378 2.310538 CTGGTGAAGTTCTTTTGGGCT 58.689 47.619 4.17 0.00 0.00 5.19
378 379 2.031870 ACTGGTGAAGTTCTTTTGGGC 58.968 47.619 4.17 0.00 34.57 5.36
379 380 4.714632 TCTACTGGTGAAGTTCTTTTGGG 58.285 43.478 4.17 0.00 40.56 4.12
380 381 5.997746 TGATCTACTGGTGAAGTTCTTTTGG 59.002 40.000 4.17 0.00 40.56 3.28
381 382 6.708054 AGTGATCTACTGGTGAAGTTCTTTTG 59.292 38.462 4.17 0.00 40.56 2.44
382 383 6.831976 AGTGATCTACTGGTGAAGTTCTTTT 58.168 36.000 4.17 0.00 40.56 2.27
383 384 6.426646 AGTGATCTACTGGTGAAGTTCTTT 57.573 37.500 4.17 0.00 40.56 2.52
384 385 6.226787 CAAGTGATCTACTGGTGAAGTTCTT 58.773 40.000 4.17 0.00 40.26 2.52
385 386 5.788450 CAAGTGATCTACTGGTGAAGTTCT 58.212 41.667 4.17 0.00 40.26 3.01
386 387 4.390297 GCAAGTGATCTACTGGTGAAGTTC 59.610 45.833 0.00 0.00 40.26 3.01
387 388 4.040952 AGCAAGTGATCTACTGGTGAAGTT 59.959 41.667 0.00 0.00 40.26 2.66
388 389 3.580458 AGCAAGTGATCTACTGGTGAAGT 59.420 43.478 0.00 0.00 40.26 3.01
389 390 4.199432 AGCAAGTGATCTACTGGTGAAG 57.801 45.455 0.00 0.00 40.26 3.02
390 391 5.246203 AGTTAGCAAGTGATCTACTGGTGAA 59.754 40.000 0.00 0.00 40.26 3.18
391 392 4.772624 AGTTAGCAAGTGATCTACTGGTGA 59.227 41.667 0.00 0.00 40.26 4.02
392 393 5.078411 AGTTAGCAAGTGATCTACTGGTG 57.922 43.478 0.00 0.00 40.26 4.17
393 394 6.852420 TTAGTTAGCAAGTGATCTACTGGT 57.148 37.500 0.00 0.00 40.26 4.00
394 395 7.276658 CAGTTTAGTTAGCAAGTGATCTACTGG 59.723 40.741 0.00 0.00 40.26 4.00
435 436 2.100584 CTCTCTAGCTCTCAAACGGCAT 59.899 50.000 0.00 0.00 0.00 4.40
436 437 1.474478 CTCTCTAGCTCTCAAACGGCA 59.526 52.381 0.00 0.00 0.00 5.69
437 438 1.746220 TCTCTCTAGCTCTCAAACGGC 59.254 52.381 0.00 0.00 0.00 5.68
438 439 3.275143 TCTCTCTCTAGCTCTCAAACGG 58.725 50.000 0.00 0.00 0.00 4.44
439 440 4.188462 TCTCTCTCTCTAGCTCTCAAACG 58.812 47.826 0.00 0.00 0.00 3.60
440 441 5.428253 TCTCTCTCTCTCTAGCTCTCAAAC 58.572 45.833 0.00 0.00 0.00 2.93
451 452 1.492176 CTGGGCTCTCTCTCTCTCTCT 59.508 57.143 0.00 0.00 0.00 3.10
452 453 1.972872 CTGGGCTCTCTCTCTCTCTC 58.027 60.000 0.00 0.00 0.00 3.20
454 455 1.109323 GGCTGGGCTCTCTCTCTCTC 61.109 65.000 0.00 0.00 0.00 3.20
455 456 1.076044 GGCTGGGCTCTCTCTCTCT 60.076 63.158 0.00 0.00 0.00 3.10
456 457 2.133641 GGGCTGGGCTCTCTCTCTC 61.134 68.421 0.00 0.00 0.00 3.20
457 458 2.042025 GGGCTGGGCTCTCTCTCT 60.042 66.667 0.00 0.00 0.00 3.10
458 459 3.535962 CGGGCTGGGCTCTCTCTC 61.536 72.222 0.00 0.00 0.00 3.20
460 461 2.585791 CTTTCGGGCTGGGCTCTCTC 62.586 65.000 0.00 0.00 0.00 3.20
502 519 3.032667 GCGGGGGAGGAGGTCTTTC 62.033 68.421 0.00 0.00 0.00 2.62
503 520 3.009714 GCGGGGGAGGAGGTCTTT 61.010 66.667 0.00 0.00 0.00 2.52
531 558 2.904866 TGGACTTGCGGTTGTGGC 60.905 61.111 0.00 0.00 0.00 5.01
541 568 1.216710 GGAGGAGCGAGTGGACTTG 59.783 63.158 0.00 0.00 0.00 3.16
542 569 1.985116 GGGAGGAGCGAGTGGACTT 60.985 63.158 0.00 0.00 0.00 3.01
543 570 2.363147 GGGAGGAGCGAGTGGACT 60.363 66.667 0.00 0.00 0.00 3.85
544 571 2.680352 TGGGAGGAGCGAGTGGAC 60.680 66.667 0.00 0.00 0.00 4.02
545 572 2.363018 CTGGGAGGAGCGAGTGGA 60.363 66.667 0.00 0.00 0.00 4.02
546 573 4.154347 GCTGGGAGGAGCGAGTGG 62.154 72.222 0.00 0.00 0.00 4.00
547 574 4.154347 GGCTGGGAGGAGCGAGTG 62.154 72.222 0.00 0.00 40.13 3.51
594 651 4.467084 GGATGCCGCGGTGGAGAA 62.467 66.667 28.70 6.12 42.00 2.87
616 673 3.990469 CGATCTCCCAGATGGTAATTTCG 59.010 47.826 0.00 0.00 34.53 3.46
619 676 3.005897 CGACGATCTCCCAGATGGTAATT 59.994 47.826 1.60 0.00 42.51 1.40
622 679 1.133884 ACGACGATCTCCCAGATGGTA 60.134 52.381 0.00 0.00 42.51 3.25
653 710 2.154074 AACGGAGGAGGGCTTTGGT 61.154 57.895 0.00 0.00 0.00 3.67
862 975 2.804090 GAACAGGGCGTCGTCGAC 60.804 66.667 15.51 15.51 45.48 4.20
863 976 4.047059 GGAACAGGGCGTCGTCGA 62.047 66.667 6.17 0.00 39.71 4.20
864 977 4.351938 TGGAACAGGGCGTCGTCG 62.352 66.667 0.00 0.00 40.37 5.12
961 1077 1.004440 GAAGCAGCGAGAGGTTGGT 60.004 57.895 0.00 0.00 41.81 3.67
1343 1473 6.292542 CCAGATATAAACATGTGTCGCTTCAG 60.293 42.308 0.00 0.00 0.00 3.02
1350 1480 5.296780 CACCACCCAGATATAAACATGTGTC 59.703 44.000 0.00 0.00 0.00 3.67
1351 1481 5.192927 CACCACCCAGATATAAACATGTGT 58.807 41.667 0.00 0.00 0.00 3.72
1352 1482 4.036734 GCACCACCCAGATATAAACATGTG 59.963 45.833 0.00 0.00 0.00 3.21
1353 1483 4.207165 GCACCACCCAGATATAAACATGT 58.793 43.478 0.00 0.00 0.00 3.21
1354 1484 4.206375 TGCACCACCCAGATATAAACATG 58.794 43.478 0.00 0.00 0.00 3.21
1360 1499 2.104792 GCTCTTGCACCACCCAGATATA 59.895 50.000 0.00 0.00 39.41 0.86
1395 1534 2.905415 ATTTCAATGCCCAGACCTCA 57.095 45.000 0.00 0.00 0.00 3.86
1504 1646 2.774126 CAGCACGAGCACATCACG 59.226 61.111 7.77 0.00 45.49 4.35
1551 1696 1.541147 ACCAACTTGCCATTGATGTCG 59.459 47.619 0.00 0.00 0.00 4.35
1648 1793 6.920817 TCACAACATAATCTTCTAGTGTCGT 58.079 36.000 0.00 0.00 0.00 4.34
1675 1820 1.676006 CTGTCAAACGGAAGGCAAAGT 59.324 47.619 0.00 0.00 0.00 2.66
1801 1948 9.255304 GAGCTTCTTGATCATAAAACTAGTAGG 57.745 37.037 0.00 0.00 0.00 3.18
1802 1949 9.255304 GGAGCTTCTTGATCATAAAACTAGTAG 57.745 37.037 0.00 0.00 31.67 2.57
1864 2011 5.393027 CCACTTCAACCCAAAAGGATATTCG 60.393 44.000 0.00 0.00 39.89 3.34
1940 3890 1.135721 GAGGCAGATCAATTGGCAACC 59.864 52.381 0.00 0.00 42.98 3.77
1960 3912 3.738282 CAGTTCAGAGGAAAACAGAGACG 59.262 47.826 0.00 0.00 34.13 4.18
2156 4110 1.818642 AGCAATGCTCCACACTCTTC 58.181 50.000 0.00 0.00 30.62 2.87
2206 4160 4.267357 TGCAACAGAACGTTTCACTAAC 57.733 40.909 0.46 0.00 34.86 2.34
2249 4206 3.770933 ACCTAACCAGATGCAATGCAATT 59.229 39.130 13.45 0.00 43.62 2.32
2252 4209 2.093890 CACCTAACCAGATGCAATGCA 58.906 47.619 11.44 11.44 44.86 3.96
2253 4210 2.094675 ACACCTAACCAGATGCAATGC 58.905 47.619 0.00 0.00 0.00 3.56
2275 4232 6.100004 AGACGGAACTATAACTGAACATGTG 58.900 40.000 0.00 0.00 0.00 3.21
2284 4241 6.091437 CGACAAAGAAGACGGAACTATAACT 58.909 40.000 0.00 0.00 0.00 2.24
2285 4242 5.220172 GCGACAAAGAAGACGGAACTATAAC 60.220 44.000 0.00 0.00 0.00 1.89
2286 4243 4.860907 GCGACAAAGAAGACGGAACTATAA 59.139 41.667 0.00 0.00 0.00 0.98
2288 4245 3.056749 AGCGACAAAGAAGACGGAACTAT 60.057 43.478 0.00 0.00 0.00 2.12
2291 4248 1.499049 AGCGACAAAGAAGACGGAAC 58.501 50.000 0.00 0.00 0.00 3.62
2295 4252 3.319238 AACAAAGCGACAAAGAAGACG 57.681 42.857 0.00 0.00 0.00 4.18
2296 4253 3.791353 CCAAACAAAGCGACAAAGAAGAC 59.209 43.478 0.00 0.00 0.00 3.01
2297 4254 3.181491 CCCAAACAAAGCGACAAAGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
2298 4255 3.115554 CCCAAACAAAGCGACAAAGAAG 58.884 45.455 0.00 0.00 0.00 2.85
2299 4256 2.755655 TCCCAAACAAAGCGACAAAGAA 59.244 40.909 0.00 0.00 0.00 2.52
2300 4257 2.370349 TCCCAAACAAAGCGACAAAGA 58.630 42.857 0.00 0.00 0.00 2.52
2301 4258 2.861462 TCCCAAACAAAGCGACAAAG 57.139 45.000 0.00 0.00 0.00 2.77
2302 4259 2.690497 TGATCCCAAACAAAGCGACAAA 59.310 40.909 0.00 0.00 0.00 2.83
2303 4260 2.302260 TGATCCCAAACAAAGCGACAA 58.698 42.857 0.00 0.00 0.00 3.18
2304 4261 1.974265 TGATCCCAAACAAAGCGACA 58.026 45.000 0.00 0.00 0.00 4.35
2305 4262 2.749621 AGATGATCCCAAACAAAGCGAC 59.250 45.455 0.00 0.00 0.00 5.19
2306 4263 2.749076 CAGATGATCCCAAACAAAGCGA 59.251 45.455 0.00 0.00 0.00 4.93
2307 4264 2.489329 ACAGATGATCCCAAACAAAGCG 59.511 45.455 0.00 0.00 0.00 4.68
2308 4265 4.702131 AGTACAGATGATCCCAAACAAAGC 59.298 41.667 0.00 0.00 0.00 3.51
2309 4266 5.939883 TGAGTACAGATGATCCCAAACAAAG 59.060 40.000 0.00 0.00 0.00 2.77
2310 4267 5.875224 TGAGTACAGATGATCCCAAACAAA 58.125 37.500 0.00 0.00 0.00 2.83
2347 4304 7.622081 TGATAGTAACAGTATCTGAAGGGGAAA 59.378 37.037 3.70 0.00 32.91 3.13
2366 4323 5.821470 GCGGTACTAGATATGGCTGATAGTA 59.179 44.000 0.00 0.00 0.00 1.82
2370 4327 3.445450 CAGCGGTACTAGATATGGCTGAT 59.555 47.826 16.68 0.00 41.19 2.90
2378 4335 4.518211 GCTTTCTACCAGCGGTACTAGATA 59.482 45.833 0.00 0.00 37.09 1.98
2383 4340 1.204941 CTGCTTTCTACCAGCGGTACT 59.795 52.381 3.72 0.00 40.45 2.73
2385 4342 0.535335 CCTGCTTTCTACCAGCGGTA 59.465 55.000 7.15 7.15 41.45 4.02
2389 4346 0.322008 ACAGCCTGCTTTCTACCAGC 60.322 55.000 0.00 0.00 37.82 4.85
2395 4352 2.105477 TCTTTGAGACAGCCTGCTTTCT 59.895 45.455 7.50 7.50 35.98 2.52
2405 4362 3.316029 TGCCACACAAATCTTTGAGACAG 59.684 43.478 9.53 0.00 40.55 3.51
2431 4388 5.728351 TTTACAGCTGTATGTATTTCGGC 57.272 39.130 26.54 0.00 35.65 5.54
2432 4389 6.238374 CCCTTTTACAGCTGTATGTATTTCGG 60.238 42.308 26.54 16.48 35.65 4.30
2433 4390 6.238374 CCCCTTTTACAGCTGTATGTATTTCG 60.238 42.308 26.54 9.80 35.65 3.46
2434 4391 6.039382 CCCCCTTTTACAGCTGTATGTATTTC 59.961 42.308 26.54 0.00 35.65 2.17
2435 4392 5.891551 CCCCCTTTTACAGCTGTATGTATTT 59.108 40.000 26.54 0.53 35.65 1.40
2436 4393 5.044402 ACCCCCTTTTACAGCTGTATGTATT 60.044 40.000 26.54 1.34 35.65 1.89
2437 4394 4.477213 ACCCCCTTTTACAGCTGTATGTAT 59.523 41.667 26.54 2.14 35.65 2.29
2438 4395 3.847780 ACCCCCTTTTACAGCTGTATGTA 59.152 43.478 26.54 10.02 34.56 2.29
2439 4396 2.647802 ACCCCCTTTTACAGCTGTATGT 59.352 45.455 26.54 12.22 37.19 2.29
2446 4403 2.570302 TCAGACTACCCCCTTTTACAGC 59.430 50.000 0.00 0.00 0.00 4.40
2447 4404 4.903045 TTCAGACTACCCCCTTTTACAG 57.097 45.455 0.00 0.00 0.00 2.74
2455 4412 4.019231 AGAATGACTTTTCAGACTACCCCC 60.019 45.833 0.00 0.00 34.35 5.40
2456 4413 4.938226 CAGAATGACTTTTCAGACTACCCC 59.062 45.833 0.00 0.00 39.69 4.95
2457 4414 5.794894 TCAGAATGACTTTTCAGACTACCC 58.205 41.667 0.00 0.00 42.56 3.69
2474 4431 4.699735 TGTGCGGTAACAAATGATCAGAAT 59.300 37.500 0.09 0.00 0.00 2.40
2528 4489 1.642037 CTGCAAGTGATGTGAGCGGG 61.642 60.000 0.00 0.00 0.00 6.13
2530 4491 1.792301 CCTGCAAGTGATGTGAGCG 59.208 57.895 0.00 0.00 0.00 5.03
2545 4506 4.946157 AGAAAACTGATTGTGGATAGCCTG 59.054 41.667 0.00 0.00 34.31 4.85
2552 4513 5.530915 CAGGTAACAGAAAACTGATTGTGGA 59.469 40.000 0.00 0.00 41.41 4.02
2604 4571 5.182950 TGCAACCACACTCCAAATAATAGTG 59.817 40.000 0.00 0.00 44.89 2.74
2606 4573 5.415701 ACTGCAACCACACTCCAAATAATAG 59.584 40.000 0.00 0.00 0.00 1.73
2611 4578 2.071778 ACTGCAACCACACTCCAAAT 57.928 45.000 0.00 0.00 0.00 2.32
2640 4613 2.288948 GCTGTCCATCATTTTTGCCACA 60.289 45.455 0.00 0.00 0.00 4.17
2642 4615 1.969208 TGCTGTCCATCATTTTTGCCA 59.031 42.857 0.00 0.00 0.00 4.92
2652 4625 3.921119 TGTTTTCATGTGCTGTCCATC 57.079 42.857 0.00 0.00 0.00 3.51
2653 4626 3.890756 TCTTGTTTTCATGTGCTGTCCAT 59.109 39.130 0.00 0.00 0.00 3.41
2654 4627 3.286353 TCTTGTTTTCATGTGCTGTCCA 58.714 40.909 0.00 0.00 0.00 4.02
2655 4628 3.988379 TCTTGTTTTCATGTGCTGTCC 57.012 42.857 0.00 0.00 0.00 4.02
2656 4629 5.978919 TCAAATCTTGTTTTCATGTGCTGTC 59.021 36.000 0.00 0.00 0.00 3.51
2657 4630 5.904941 TCAAATCTTGTTTTCATGTGCTGT 58.095 33.333 0.00 0.00 0.00 4.40
2658 4631 8.697846 ATATCAAATCTTGTTTTCATGTGCTG 57.302 30.769 0.00 0.00 0.00 4.41
2660 4633 8.749499 GCTATATCAAATCTTGTTTTCATGTGC 58.251 33.333 0.00 0.00 0.00 4.57
2661 4634 9.791820 TGCTATATCAAATCTTGTTTTCATGTG 57.208 29.630 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.