Multiple sequence alignment - TraesCS2A01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G091200 chr2A 100.000 2234 0 0 1 2234 43503666 43501433 0.000000e+00 4126
1 TraesCS2A01G091200 chr2A 90.037 1074 94 8 303 1370 774914626 774915692 0.000000e+00 1378
2 TraesCS2A01G091200 chr2A 97.351 302 7 1 1 302 43522252 43521952 1.530000e-141 512
3 TraesCS2A01G091200 chr2A 95.498 311 11 3 1 310 281266907 281267215 5.540000e-136 494
4 TraesCS2A01G091200 chr7A 95.421 1070 43 3 303 1370 136353975 136352910 0.000000e+00 1700
5 TraesCS2A01G091200 chr7A 96.370 303 9 2 1 302 398395242 398394941 4.280000e-137 497
6 TraesCS2A01G091200 chr6A 93.991 1065 62 2 303 1367 449405151 449404089 0.000000e+00 1611
7 TraesCS2A01G091200 chr6A 96.358 302 10 1 1 302 182748823 182748523 1.540000e-136 496
8 TraesCS2A01G091200 chr6A 95.161 310 14 1 1 310 468674676 468674368 2.580000e-134 488
9 TraesCS2A01G091200 chr3A 93.902 1066 62 3 305 1369 713320330 713319267 0.000000e+00 1605
10 TraesCS2A01G091200 chr3A 96.358 302 10 1 1 302 363241699 363241399 1.540000e-136 496
11 TraesCS2A01G091200 chr6D 93.891 1064 61 2 303 1366 299185793 299186852 0.000000e+00 1602
12 TraesCS2A01G091200 chr3B 90.271 1069 97 7 303 1369 37965823 37966886 0.000000e+00 1391
13 TraesCS2A01G091200 chr2B 90.271 1069 97 6 303 1369 644525430 644524367 0.000000e+00 1391
14 TraesCS2A01G091200 chr4B 90.028 1073 102 5 303 1373 476356542 476357611 0.000000e+00 1384
15 TraesCS2A01G091200 chr4B 90.075 1068 103 3 303 1369 31658930 31657865 0.000000e+00 1382
16 TraesCS2A01G091200 chr4B 86.538 156 19 2 1637 1791 54326785 54326939 1.060000e-38 171
17 TraesCS2A01G091200 chr2D 86.737 475 48 9 1367 1827 432771632 432772105 4.250000e-142 514
18 TraesCS2A01G091200 chr2D 82.412 398 39 13 1846 2230 432772199 432772578 3.580000e-83 318
19 TraesCS2A01G091200 chr6B 86.526 475 47 11 1367 1827 558924927 558925398 7.120000e-140 507
20 TraesCS2A01G091200 chr6B 85.915 142 18 2 1637 1777 658808946 658808806 1.380000e-32 150
21 TraesCS2A01G091200 chr5A 96.358 302 10 1 1 302 152463488 152463788 1.540000e-136 496
22 TraesCS2A01G091200 chr5A 96.358 302 10 1 1 302 598383800 598384100 1.540000e-136 496
23 TraesCS2A01G091200 chr5A 87.437 199 24 1 1626 1824 620410751 620410554 6.210000e-56 228
24 TraesCS2A01G091200 chr5A 89.720 107 11 0 1864 1970 577808306 577808412 1.080000e-28 137
25 TraesCS2A01G091200 chr4A 93.272 327 18 3 1 325 490030227 490029903 1.550000e-131 479
26 TraesCS2A01G091200 chr4A 90.654 107 10 0 1864 1970 24022056 24022162 2.310000e-30 143
27 TraesCS2A01G091200 chr3D 83.918 485 47 19 1367 1835 23151824 23151355 3.410000e-118 435
28 TraesCS2A01G091200 chr3D 82.396 409 35 15 1845 2230 23151273 23150879 2.770000e-84 322
29 TraesCS2A01G091200 chr5D 83.548 310 31 12 1935 2229 553782967 553783271 2.830000e-69 272
30 TraesCS2A01G091200 chr1A 79.088 373 47 24 1864 2230 498405664 498405317 6.210000e-56 228
31 TraesCS2A01G091200 chr1A 90.654 107 10 0 1864 1970 549336154 549336048 2.310000e-30 143
32 TraesCS2A01G091200 chr5B 85.256 156 21 2 1637 1791 350398168 350398014 2.300000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G091200 chr2A 43501433 43503666 2233 True 4126.0 4126 100.0000 1 2234 1 chr2A.!!$R1 2233
1 TraesCS2A01G091200 chr2A 774914626 774915692 1066 False 1378.0 1378 90.0370 303 1370 1 chr2A.!!$F2 1067
2 TraesCS2A01G091200 chr7A 136352910 136353975 1065 True 1700.0 1700 95.4210 303 1370 1 chr7A.!!$R1 1067
3 TraesCS2A01G091200 chr6A 449404089 449405151 1062 True 1611.0 1611 93.9910 303 1367 1 chr6A.!!$R2 1064
4 TraesCS2A01G091200 chr3A 713319267 713320330 1063 True 1605.0 1605 93.9020 305 1369 1 chr3A.!!$R2 1064
5 TraesCS2A01G091200 chr6D 299185793 299186852 1059 False 1602.0 1602 93.8910 303 1366 1 chr6D.!!$F1 1063
6 TraesCS2A01G091200 chr3B 37965823 37966886 1063 False 1391.0 1391 90.2710 303 1369 1 chr3B.!!$F1 1066
7 TraesCS2A01G091200 chr2B 644524367 644525430 1063 True 1391.0 1391 90.2710 303 1369 1 chr2B.!!$R1 1066
8 TraesCS2A01G091200 chr4B 476356542 476357611 1069 False 1384.0 1384 90.0280 303 1373 1 chr4B.!!$F2 1070
9 TraesCS2A01G091200 chr4B 31657865 31658930 1065 True 1382.0 1382 90.0750 303 1369 1 chr4B.!!$R1 1066
10 TraesCS2A01G091200 chr2D 432771632 432772578 946 False 416.0 514 84.5745 1367 2230 2 chr2D.!!$F1 863
11 TraesCS2A01G091200 chr3D 23150879 23151824 945 True 378.5 435 83.1570 1367 2230 2 chr3D.!!$R1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.036388 TGGCAAGTCTCGGTCCAATC 60.036 55.0 0.0 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2074 0.234884 GACGGAACACAAAAGGCGAG 59.765 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.357517 CGCTTGGCAAGTCTCGGT 60.358 61.111 26.71 0.00 0.00 4.69
18 19 2.383527 CGCTTGGCAAGTCTCGGTC 61.384 63.158 26.71 8.68 0.00 4.79
19 20 2.035442 GCTTGGCAAGTCTCGGTCC 61.035 63.158 26.71 5.36 0.00 4.46
20 21 1.371183 CTTGGCAAGTCTCGGTCCA 59.629 57.895 19.07 0.00 0.00 4.02
21 22 0.250295 CTTGGCAAGTCTCGGTCCAA 60.250 55.000 19.07 0.00 35.70 3.53
22 23 0.400213 TTGGCAAGTCTCGGTCCAAT 59.600 50.000 0.00 0.00 32.42 3.16
23 24 0.036388 TGGCAAGTCTCGGTCCAATC 60.036 55.000 0.00 0.00 0.00 2.67
24 25 0.744771 GGCAAGTCTCGGTCCAATCC 60.745 60.000 0.00 0.00 0.00 3.01
39 40 5.845391 TCCAATCCGGAAATGTTTAATCC 57.155 39.130 9.01 0.00 42.52 3.01
40 41 4.647399 TCCAATCCGGAAATGTTTAATCCC 59.353 41.667 9.01 0.00 42.52 3.85
41 42 4.202212 CCAATCCGGAAATGTTTAATCCCC 60.202 45.833 9.01 0.00 36.56 4.81
42 43 3.741245 TCCGGAAATGTTTAATCCCCA 57.259 42.857 0.00 0.00 0.00 4.96
43 44 3.358118 TCCGGAAATGTTTAATCCCCAC 58.642 45.455 0.00 0.00 0.00 4.61
44 45 3.093057 CCGGAAATGTTTAATCCCCACA 58.907 45.455 0.00 0.00 0.00 4.17
45 46 3.119280 CCGGAAATGTTTAATCCCCACAC 60.119 47.826 0.00 0.00 0.00 3.82
46 47 3.508012 CGGAAATGTTTAATCCCCACACA 59.492 43.478 0.00 0.00 0.00 3.72
47 48 4.617298 CGGAAATGTTTAATCCCCACACAC 60.617 45.833 0.00 0.00 0.00 3.82
48 49 4.481463 GAAATGTTTAATCCCCACACACG 58.519 43.478 0.00 0.00 0.00 4.49
49 50 2.932855 TGTTTAATCCCCACACACGA 57.067 45.000 0.00 0.00 0.00 4.35
50 51 3.210232 TGTTTAATCCCCACACACGAA 57.790 42.857 0.00 0.00 0.00 3.85
51 52 3.552875 TGTTTAATCCCCACACACGAAA 58.447 40.909 0.00 0.00 0.00 3.46
52 53 3.566322 TGTTTAATCCCCACACACGAAAG 59.434 43.478 0.00 0.00 0.00 2.62
53 54 3.773418 TTAATCCCCACACACGAAAGA 57.227 42.857 0.00 0.00 0.00 2.52
54 55 2.649531 AATCCCCACACACGAAAGAA 57.350 45.000 0.00 0.00 0.00 2.52
55 56 2.649531 ATCCCCACACACGAAAGAAA 57.350 45.000 0.00 0.00 0.00 2.52
56 57 1.961793 TCCCCACACACGAAAGAAAG 58.038 50.000 0.00 0.00 0.00 2.62
57 58 0.310854 CCCCACACACGAAAGAAAGC 59.689 55.000 0.00 0.00 0.00 3.51
58 59 1.308998 CCCACACACGAAAGAAAGCT 58.691 50.000 0.00 0.00 0.00 3.74
59 60 2.489971 CCCACACACGAAAGAAAGCTA 58.510 47.619 0.00 0.00 0.00 3.32
60 61 2.480419 CCCACACACGAAAGAAAGCTAG 59.520 50.000 0.00 0.00 0.00 3.42
61 62 3.390135 CCACACACGAAAGAAAGCTAGA 58.610 45.455 0.00 0.00 0.00 2.43
62 63 3.807622 CCACACACGAAAGAAAGCTAGAA 59.192 43.478 0.00 0.00 0.00 2.10
63 64 4.452455 CCACACACGAAAGAAAGCTAGAAT 59.548 41.667 0.00 0.00 0.00 2.40
64 65 5.049405 CCACACACGAAAGAAAGCTAGAATT 60.049 40.000 0.00 0.00 0.00 2.17
65 66 5.848036 CACACACGAAAGAAAGCTAGAATTG 59.152 40.000 0.00 0.00 0.00 2.32
66 67 5.049405 ACACACGAAAGAAAGCTAGAATTGG 60.049 40.000 0.00 0.00 0.00 3.16
67 68 4.083271 ACACGAAAGAAAGCTAGAATTGGC 60.083 41.667 0.00 0.00 0.00 4.52
68 69 3.440522 ACGAAAGAAAGCTAGAATTGGCC 59.559 43.478 0.00 0.00 0.00 5.36
69 70 3.440173 CGAAAGAAAGCTAGAATTGGCCA 59.560 43.478 0.00 0.00 0.00 5.36
70 71 4.672801 CGAAAGAAAGCTAGAATTGGCCAC 60.673 45.833 3.88 0.00 0.00 5.01
71 72 2.728007 AGAAAGCTAGAATTGGCCACC 58.272 47.619 3.88 0.00 0.00 4.61
72 73 1.401905 GAAAGCTAGAATTGGCCACCG 59.598 52.381 3.88 0.00 0.00 4.94
73 74 0.394352 AAGCTAGAATTGGCCACCGG 60.394 55.000 3.88 0.00 0.00 5.28
74 75 1.223487 GCTAGAATTGGCCACCGGA 59.777 57.895 9.46 0.00 0.00 5.14
75 76 0.815615 GCTAGAATTGGCCACCGGAG 60.816 60.000 9.46 0.00 0.00 4.63
88 89 2.881352 CGGAGGAGAACGAAGCGC 60.881 66.667 0.00 0.00 0.00 5.92
89 90 2.509561 GGAGGAGAACGAAGCGCC 60.510 66.667 2.29 0.00 0.00 6.53
90 91 2.881352 GAGGAGAACGAAGCGCCG 60.881 66.667 2.29 3.59 0.00 6.46
91 92 4.436998 AGGAGAACGAAGCGCCGG 62.437 66.667 2.29 0.00 0.00 6.13
92 93 4.430765 GGAGAACGAAGCGCCGGA 62.431 66.667 5.05 0.00 0.00 5.14
93 94 2.431942 GAGAACGAAGCGCCGGAA 60.432 61.111 5.05 0.00 0.00 4.30
94 95 1.810030 GAGAACGAAGCGCCGGAAT 60.810 57.895 5.05 0.00 0.00 3.01
95 96 2.025359 GAGAACGAAGCGCCGGAATG 62.025 60.000 5.05 0.00 0.00 2.67
96 97 3.718480 GAACGAAGCGCCGGAATGC 62.718 63.158 5.05 5.46 0.00 3.56
98 99 3.798650 CGAAGCGCCGGAATGCAA 61.799 61.111 5.05 0.00 0.00 4.08
99 100 2.566010 GAAGCGCCGGAATGCAAA 59.434 55.556 5.05 0.00 0.00 3.68
100 101 1.080839 GAAGCGCCGGAATGCAAAA 60.081 52.632 5.05 0.00 0.00 2.44
101 102 1.344226 GAAGCGCCGGAATGCAAAAC 61.344 55.000 5.05 0.00 0.00 2.43
102 103 3.171911 GCGCCGGAATGCAAAACG 61.172 61.111 5.05 0.00 0.00 3.60
103 104 2.558821 CGCCGGAATGCAAAACGA 59.441 55.556 5.05 0.00 0.00 3.85
104 105 1.081774 CGCCGGAATGCAAAACGAA 60.082 52.632 5.05 0.00 0.00 3.85
105 106 1.334288 CGCCGGAATGCAAAACGAAC 61.334 55.000 5.05 1.02 0.00 3.95
106 107 0.318275 GCCGGAATGCAAAACGAACA 60.318 50.000 5.05 0.00 0.00 3.18
107 108 1.866063 GCCGGAATGCAAAACGAACAA 60.866 47.619 5.05 0.00 0.00 2.83
108 109 2.671596 CCGGAATGCAAAACGAACAAT 58.328 42.857 0.00 0.00 0.00 2.71
109 110 2.408032 CCGGAATGCAAAACGAACAATG 59.592 45.455 0.00 0.00 0.00 2.82
110 111 2.408032 CGGAATGCAAAACGAACAATGG 59.592 45.455 0.00 0.00 0.00 3.16
111 112 2.736192 GGAATGCAAAACGAACAATGGG 59.264 45.455 0.00 0.00 0.00 4.00
112 113 2.453983 ATGCAAAACGAACAATGGGG 57.546 45.000 0.00 0.00 0.00 4.96
113 114 1.403814 TGCAAAACGAACAATGGGGA 58.596 45.000 0.00 0.00 0.00 4.81
114 115 1.757118 TGCAAAACGAACAATGGGGAA 59.243 42.857 0.00 0.00 0.00 3.97
115 116 2.168521 TGCAAAACGAACAATGGGGAAA 59.831 40.909 0.00 0.00 0.00 3.13
116 117 3.198872 GCAAAACGAACAATGGGGAAAA 58.801 40.909 0.00 0.00 0.00 2.29
117 118 3.812609 GCAAAACGAACAATGGGGAAAAT 59.187 39.130 0.00 0.00 0.00 1.82
118 119 4.319405 GCAAAACGAACAATGGGGAAAATG 60.319 41.667 0.00 0.00 0.00 2.32
119 120 2.741759 ACGAACAATGGGGAAAATGC 57.258 45.000 0.00 0.00 0.00 3.56
120 121 2.247358 ACGAACAATGGGGAAAATGCT 58.753 42.857 0.00 0.00 0.00 3.79
121 122 2.231235 ACGAACAATGGGGAAAATGCTC 59.769 45.455 0.00 0.00 0.00 4.26
122 123 2.731968 CGAACAATGGGGAAAATGCTCG 60.732 50.000 0.00 0.00 0.00 5.03
123 124 2.214376 ACAATGGGGAAAATGCTCGA 57.786 45.000 0.00 0.00 0.00 4.04
124 125 2.524306 ACAATGGGGAAAATGCTCGAA 58.476 42.857 0.00 0.00 0.00 3.71
125 126 3.099141 ACAATGGGGAAAATGCTCGAAT 58.901 40.909 0.00 0.00 0.00 3.34
126 127 3.119029 ACAATGGGGAAAATGCTCGAATG 60.119 43.478 0.00 0.00 0.00 2.67
127 128 0.817013 TGGGGAAAATGCTCGAATGC 59.183 50.000 0.00 0.00 0.00 3.56
135 136 2.669419 TGCTCGAATGCATGAGACG 58.331 52.632 16.17 12.23 38.12 4.18
136 137 0.173255 TGCTCGAATGCATGAGACGA 59.827 50.000 16.17 15.15 38.12 4.20
137 138 1.280982 GCTCGAATGCATGAGACGAA 58.719 50.000 16.17 4.08 34.04 3.85
138 139 1.005557 GCTCGAATGCATGAGACGAAC 60.006 52.381 16.17 9.77 34.04 3.95
139 140 2.262211 CTCGAATGCATGAGACGAACA 58.738 47.619 0.00 0.00 34.04 3.18
140 141 1.992667 TCGAATGCATGAGACGAACAC 59.007 47.619 0.00 0.00 0.00 3.32
141 142 1.266550 CGAATGCATGAGACGAACACG 60.267 52.381 0.00 0.00 0.00 4.49
142 143 1.726791 GAATGCATGAGACGAACACGT 59.273 47.619 0.00 0.00 43.06 4.49
143 144 2.647529 ATGCATGAGACGAACACGTA 57.352 45.000 0.00 0.00 40.41 3.57
144 145 2.647529 TGCATGAGACGAACACGTAT 57.352 45.000 0.00 0.00 40.41 3.06
145 146 2.258755 TGCATGAGACGAACACGTATG 58.741 47.619 0.00 0.00 40.41 2.39
146 147 1.005975 GCATGAGACGAACACGTATGC 60.006 52.381 11.24 11.24 40.02 3.14
147 148 2.258755 CATGAGACGAACACGTATGCA 58.741 47.619 0.00 0.00 40.41 3.96
148 149 2.425578 TGAGACGAACACGTATGCAA 57.574 45.000 0.00 0.00 40.41 4.08
149 150 2.745102 TGAGACGAACACGTATGCAAA 58.255 42.857 0.00 0.00 40.41 3.68
150 151 3.322369 TGAGACGAACACGTATGCAAAT 58.678 40.909 0.00 0.00 40.41 2.32
151 152 3.122780 TGAGACGAACACGTATGCAAATG 59.877 43.478 0.00 0.00 40.41 2.32
152 153 2.159707 AGACGAACACGTATGCAAATGC 60.160 45.455 0.00 0.00 40.41 3.56
153 154 1.533299 ACGAACACGTATGCAAATGCA 59.467 42.857 10.94 10.94 43.07 3.96
154 155 2.031595 ACGAACACGTATGCAAATGCAA 60.032 40.909 12.67 0.00 42.35 4.08
155 156 3.365868 ACGAACACGTATGCAAATGCAAT 60.366 39.130 12.67 4.14 42.35 3.56
156 157 5.423937 ACGAACACGTATGCAAATGCAATG 61.424 41.667 12.67 10.66 42.35 2.82
165 166 3.317744 GCAAATGCAATGCACATGATG 57.682 42.857 21.43 12.69 43.04 3.07
166 167 2.933260 GCAAATGCAATGCACATGATGA 59.067 40.909 21.43 0.00 43.04 2.92
167 168 3.242284 GCAAATGCAATGCACATGATGAC 60.242 43.478 21.43 4.57 43.04 3.06
168 169 3.878160 AATGCAATGCACATGATGACA 57.122 38.095 11.23 0.00 43.04 3.58
169 170 4.400529 AATGCAATGCACATGATGACAT 57.599 36.364 11.23 0.00 43.04 3.06
184 185 6.985188 TGATGACATGATATGAGATGCATG 57.015 37.500 2.46 0.00 42.75 4.06
185 186 6.707290 TGATGACATGATATGAGATGCATGA 58.293 36.000 2.46 0.00 40.29 3.07
186 187 6.594159 TGATGACATGATATGAGATGCATGAC 59.406 38.462 2.46 0.00 40.29 3.06
187 188 5.860611 TGACATGATATGAGATGCATGACA 58.139 37.500 2.46 4.19 40.29 3.58
188 189 6.292923 TGACATGATATGAGATGCATGACAA 58.707 36.000 2.46 0.00 39.26 3.18
189 190 6.204108 TGACATGATATGAGATGCATGACAAC 59.796 38.462 2.46 1.72 39.26 3.32
190 191 5.178809 ACATGATATGAGATGCATGACAACG 59.821 40.000 2.46 0.00 40.29 4.10
191 192 4.947645 TGATATGAGATGCATGACAACGA 58.052 39.130 2.46 0.00 37.87 3.85
192 193 4.746611 TGATATGAGATGCATGACAACGAC 59.253 41.667 2.46 0.00 37.87 4.34
193 194 2.453983 TGAGATGCATGACAACGACA 57.546 45.000 2.46 0.00 0.00 4.35
194 195 2.765122 TGAGATGCATGACAACGACAA 58.235 42.857 2.46 0.00 0.00 3.18
195 196 2.480037 TGAGATGCATGACAACGACAAC 59.520 45.455 2.46 0.00 0.00 3.32
196 197 2.480037 GAGATGCATGACAACGACAACA 59.520 45.455 2.46 0.00 0.00 3.33
197 198 2.877786 AGATGCATGACAACGACAACAA 59.122 40.909 2.46 0.00 0.00 2.83
198 199 2.466870 TGCATGACAACGACAACAAC 57.533 45.000 0.00 0.00 0.00 3.32
199 200 1.740025 TGCATGACAACGACAACAACA 59.260 42.857 0.00 0.00 0.00 3.33
200 201 2.357323 TGCATGACAACGACAACAACAT 59.643 40.909 0.00 0.00 0.00 2.71
201 202 3.561725 TGCATGACAACGACAACAACATA 59.438 39.130 0.00 0.00 0.00 2.29
202 203 3.906008 GCATGACAACGACAACAACATAC 59.094 43.478 0.00 0.00 0.00 2.39
203 204 3.845231 TGACAACGACAACAACATACG 57.155 42.857 0.00 0.00 0.00 3.06
204 205 2.540516 TGACAACGACAACAACATACGG 59.459 45.455 0.00 0.00 0.00 4.02
205 206 2.796031 GACAACGACAACAACATACGGA 59.204 45.455 0.00 0.00 0.00 4.69
206 207 2.798283 ACAACGACAACAACATACGGAG 59.202 45.455 0.00 0.00 0.00 4.63
207 208 3.054166 CAACGACAACAACATACGGAGA 58.946 45.455 0.00 0.00 0.00 3.71
208 209 2.669364 ACGACAACAACATACGGAGAC 58.331 47.619 0.00 0.00 0.00 3.36
209 210 2.034939 ACGACAACAACATACGGAGACA 59.965 45.455 0.00 0.00 0.00 3.41
210 211 3.054166 CGACAACAACATACGGAGACAA 58.946 45.455 0.00 0.00 0.00 3.18
211 212 3.491639 CGACAACAACATACGGAGACAAA 59.508 43.478 0.00 0.00 0.00 2.83
212 213 4.025563 CGACAACAACATACGGAGACAAAA 60.026 41.667 0.00 0.00 0.00 2.44
213 214 5.164606 ACAACAACATACGGAGACAAAAC 57.835 39.130 0.00 0.00 0.00 2.43
214 215 4.035909 ACAACAACATACGGAGACAAAACC 59.964 41.667 0.00 0.00 0.00 3.27
215 216 3.811083 ACAACATACGGAGACAAAACCA 58.189 40.909 0.00 0.00 0.00 3.67
216 217 3.813166 ACAACATACGGAGACAAAACCAG 59.187 43.478 0.00 0.00 0.00 4.00
217 218 4.062293 CAACATACGGAGACAAAACCAGA 58.938 43.478 0.00 0.00 0.00 3.86
218 219 4.345859 ACATACGGAGACAAAACCAGAA 57.654 40.909 0.00 0.00 0.00 3.02
219 220 4.062991 ACATACGGAGACAAAACCAGAAC 58.937 43.478 0.00 0.00 0.00 3.01
220 221 1.963172 ACGGAGACAAAACCAGAACC 58.037 50.000 0.00 0.00 0.00 3.62
221 222 1.235724 CGGAGACAAAACCAGAACCC 58.764 55.000 0.00 0.00 0.00 4.11
222 223 1.476110 CGGAGACAAAACCAGAACCCA 60.476 52.381 0.00 0.00 0.00 4.51
223 224 2.661718 GGAGACAAAACCAGAACCCAA 58.338 47.619 0.00 0.00 0.00 4.12
224 225 2.623416 GGAGACAAAACCAGAACCCAAG 59.377 50.000 0.00 0.00 0.00 3.61
225 226 2.623416 GAGACAAAACCAGAACCCAAGG 59.377 50.000 0.00 0.00 0.00 3.61
226 227 2.243736 AGACAAAACCAGAACCCAAGGA 59.756 45.455 0.00 0.00 0.00 3.36
227 228 3.028130 GACAAAACCAGAACCCAAGGAA 58.972 45.455 0.00 0.00 0.00 3.36
228 229 3.445987 ACAAAACCAGAACCCAAGGAAA 58.554 40.909 0.00 0.00 0.00 3.13
229 230 3.841255 ACAAAACCAGAACCCAAGGAAAA 59.159 39.130 0.00 0.00 0.00 2.29
230 231 4.473196 ACAAAACCAGAACCCAAGGAAAAT 59.527 37.500 0.00 0.00 0.00 1.82
231 232 5.663556 ACAAAACCAGAACCCAAGGAAAATA 59.336 36.000 0.00 0.00 0.00 1.40
232 233 6.157123 ACAAAACCAGAACCCAAGGAAAATAA 59.843 34.615 0.00 0.00 0.00 1.40
233 234 6.816616 AAACCAGAACCCAAGGAAAATAAA 57.183 33.333 0.00 0.00 0.00 1.40
234 235 7.387265 AAACCAGAACCCAAGGAAAATAAAT 57.613 32.000 0.00 0.00 0.00 1.40
235 236 8.499288 AAACCAGAACCCAAGGAAAATAAATA 57.501 30.769 0.00 0.00 0.00 1.40
236 237 8.679344 AACCAGAACCCAAGGAAAATAAATAT 57.321 30.769 0.00 0.00 0.00 1.28
237 238 9.777008 AACCAGAACCCAAGGAAAATAAATATA 57.223 29.630 0.00 0.00 0.00 0.86
238 239 9.421399 ACCAGAACCCAAGGAAAATAAATATAG 57.579 33.333 0.00 0.00 0.00 1.31
239 240 8.360390 CCAGAACCCAAGGAAAATAAATATAGC 58.640 37.037 0.00 0.00 0.00 2.97
240 241 9.136323 CAGAACCCAAGGAAAATAAATATAGCT 57.864 33.333 0.00 0.00 0.00 3.32
241 242 9.715119 AGAACCCAAGGAAAATAAATATAGCTT 57.285 29.630 0.00 0.00 0.00 3.74
245 246 9.893305 CCCAAGGAAAATAAATATAGCTTAACG 57.107 33.333 0.00 0.00 0.00 3.18
246 247 9.394477 CCAAGGAAAATAAATATAGCTTAACGC 57.606 33.333 0.00 0.00 39.57 4.84
247 248 9.394477 CAAGGAAAATAAATATAGCTTAACGCC 57.606 33.333 0.00 0.00 40.39 5.68
248 249 7.803724 AGGAAAATAAATATAGCTTAACGCCG 58.196 34.615 0.00 0.00 40.39 6.46
249 250 7.019418 GGAAAATAAATATAGCTTAACGCCGG 58.981 38.462 0.00 0.00 40.39 6.13
250 251 7.095102 GGAAAATAAATATAGCTTAACGCCGGA 60.095 37.037 5.05 0.00 40.39 5.14
251 252 7.733402 AAATAAATATAGCTTAACGCCGGAA 57.267 32.000 5.05 0.00 40.39 4.30
252 253 7.733402 AATAAATATAGCTTAACGCCGGAAA 57.267 32.000 5.05 0.00 40.39 3.13
253 254 5.413969 AAATATAGCTTAACGCCGGAAAC 57.586 39.130 5.05 0.00 40.39 2.78
266 267 3.015516 GGAAACGGCAAGAGTTGGA 57.984 52.632 0.00 0.00 31.43 3.53
267 268 0.875059 GGAAACGGCAAGAGTTGGAG 59.125 55.000 0.00 0.00 31.43 3.86
268 269 1.594331 GAAACGGCAAGAGTTGGAGT 58.406 50.000 0.00 0.00 31.43 3.85
269 270 2.549349 GGAAACGGCAAGAGTTGGAGTA 60.549 50.000 0.00 0.00 31.43 2.59
270 271 2.165319 AACGGCAAGAGTTGGAGTAC 57.835 50.000 0.00 0.00 0.00 2.73
271 272 1.045407 ACGGCAAGAGTTGGAGTACA 58.955 50.000 0.00 0.00 0.00 2.90
272 273 1.414919 ACGGCAAGAGTTGGAGTACAA 59.585 47.619 0.00 0.00 36.54 2.41
273 274 2.158871 ACGGCAAGAGTTGGAGTACAAA 60.159 45.455 0.00 0.00 41.58 2.83
274 275 3.074412 CGGCAAGAGTTGGAGTACAAAT 58.926 45.455 0.00 0.00 41.58 2.32
275 276 3.502211 CGGCAAGAGTTGGAGTACAAATT 59.498 43.478 0.00 0.00 41.58 1.82
276 277 4.613622 CGGCAAGAGTTGGAGTACAAATTG 60.614 45.833 0.00 0.00 41.58 2.32
277 278 4.321230 GGCAAGAGTTGGAGTACAAATTGG 60.321 45.833 9.71 0.00 41.58 3.16
278 279 4.321230 GCAAGAGTTGGAGTACAAATTGGG 60.321 45.833 9.71 0.00 41.58 4.12
279 280 4.993705 AGAGTTGGAGTACAAATTGGGA 57.006 40.909 0.00 0.00 41.58 4.37
280 281 5.319043 AGAGTTGGAGTACAAATTGGGAA 57.681 39.130 0.00 0.00 41.58 3.97
281 282 5.701224 AGAGTTGGAGTACAAATTGGGAAA 58.299 37.500 0.00 0.00 41.58 3.13
282 283 5.770162 AGAGTTGGAGTACAAATTGGGAAAG 59.230 40.000 0.00 0.00 41.58 2.62
283 284 5.454966 AGTTGGAGTACAAATTGGGAAAGT 58.545 37.500 0.00 0.00 41.58 2.66
284 285 5.897250 AGTTGGAGTACAAATTGGGAAAGTT 59.103 36.000 0.00 0.00 41.58 2.66
285 286 7.064229 AGTTGGAGTACAAATTGGGAAAGTTA 58.936 34.615 0.00 0.00 41.58 2.24
286 287 6.887626 TGGAGTACAAATTGGGAAAGTTAC 57.112 37.500 0.00 0.00 0.00 2.50
287 288 6.366340 TGGAGTACAAATTGGGAAAGTTACA 58.634 36.000 0.00 0.00 0.00 2.41
288 289 7.007723 TGGAGTACAAATTGGGAAAGTTACAT 58.992 34.615 0.00 0.00 0.00 2.29
289 290 7.175990 TGGAGTACAAATTGGGAAAGTTACATC 59.824 37.037 0.00 0.00 0.00 3.06
290 291 7.362660 GGAGTACAAATTGGGAAAGTTACATCC 60.363 40.741 0.00 0.00 34.85 3.51
291 292 7.007723 AGTACAAATTGGGAAAGTTACATCCA 58.992 34.615 8.96 0.00 37.46 3.41
292 293 6.345096 ACAAATTGGGAAAGTTACATCCAG 57.655 37.500 8.96 0.00 37.46 3.86
293 294 5.245977 ACAAATTGGGAAAGTTACATCCAGG 59.754 40.000 8.96 0.00 37.46 4.45
294 295 3.449746 TTGGGAAAGTTACATCCAGGG 57.550 47.619 8.96 0.00 37.46 4.45
295 296 2.354328 TGGGAAAGTTACATCCAGGGT 58.646 47.619 8.96 0.00 37.46 4.34
296 297 2.041081 TGGGAAAGTTACATCCAGGGTG 59.959 50.000 0.00 0.00 37.46 4.61
297 298 2.041216 GGGAAAGTTACATCCAGGGTGT 59.959 50.000 11.12 11.12 37.46 4.16
298 299 3.499745 GGGAAAGTTACATCCAGGGTGTT 60.500 47.826 11.72 0.00 37.46 3.32
299 300 4.263594 GGGAAAGTTACATCCAGGGTGTTA 60.264 45.833 11.72 0.00 37.46 2.41
300 301 4.698780 GGAAAGTTACATCCAGGGTGTTAC 59.301 45.833 11.72 12.65 35.71 2.50
301 302 4.986054 AAGTTACATCCAGGGTGTTACA 57.014 40.909 21.46 0.00 33.02 2.41
355 356 3.329889 AATGGGTGGGCTCTGCGA 61.330 61.111 0.00 0.00 0.00 5.10
399 400 0.247736 CGCTGTTCAGGGCTTCTACT 59.752 55.000 4.09 0.00 0.00 2.57
422 423 0.925720 ATCTCCTTGGGCAATGGGGA 60.926 55.000 0.00 0.00 34.52 4.81
519 522 1.352083 CCACCAGGAAGAGGAGAACA 58.648 55.000 0.00 0.00 36.89 3.18
558 561 3.052262 AGGAGGAGAACTGGATCAGATCA 60.052 47.826 12.66 0.00 36.05 2.92
591 594 1.389609 CGTCGCCTACCCACCTACAT 61.390 60.000 0.00 0.00 0.00 2.29
628 631 2.481795 GCATCAGCTCTCTCTCAGGTTC 60.482 54.545 0.00 0.00 37.91 3.62
836 839 3.049674 CACGGCCGACATGCTTGT 61.050 61.111 35.90 4.68 39.32 3.16
910 913 0.179124 GACGTCCACTCATCTCTGCC 60.179 60.000 3.51 0.00 0.00 4.85
1261 1264 3.181516 GCCATCGTGCTGTTCTTTTCTAG 60.182 47.826 0.00 0.00 0.00 2.43
1357 1363 4.488790 CAGTGCTCCTGCCAGTTT 57.511 55.556 0.00 0.00 38.71 2.66
1391 1397 5.281314 AGTTGGGATAGGTACAGAGAACAT 58.719 41.667 0.00 0.00 0.00 2.71
1395 1401 4.223953 GGATAGGTACAGAGAACATGGGA 58.776 47.826 0.00 0.00 0.00 4.37
1396 1402 4.282195 GGATAGGTACAGAGAACATGGGAG 59.718 50.000 0.00 0.00 0.00 4.30
1410 1416 4.168101 ACATGGGAGAAGGTTCAGACTAA 58.832 43.478 0.00 0.00 0.00 2.24
1424 1430 5.401531 TCAGACTAAACTCACACATACCC 57.598 43.478 0.00 0.00 0.00 3.69
1444 1450 1.588824 CTCACACACGGCATGCCATT 61.589 55.000 34.93 19.45 35.37 3.16
1449 1457 1.677576 CACACGGCATGCCATTCTAAT 59.322 47.619 34.93 10.87 35.37 1.73
1455 1463 5.181056 CACGGCATGCCATTCTAATATACAA 59.819 40.000 34.93 0.00 35.37 2.41
1470 1478 2.411628 TACAAAGCACACACACACCT 57.588 45.000 0.00 0.00 0.00 4.00
1475 1483 0.035534 AGCACACACACACCTTGTCA 60.036 50.000 0.00 0.00 35.67 3.58
1482 1490 2.203153 ACACCTTGTCACGTGGGC 60.203 61.111 17.00 9.81 34.18 5.36
1521 1530 2.722201 CCCACTCGAGGCTACACCC 61.722 68.421 18.41 0.00 40.58 4.61
1522 1531 1.682684 CCACTCGAGGCTACACCCT 60.683 63.158 18.41 0.00 40.58 4.34
1523 1532 1.668101 CCACTCGAGGCTACACCCTC 61.668 65.000 18.41 0.00 46.42 4.30
1536 1547 1.076024 ACACCCTCTGCAACCATCAAT 59.924 47.619 0.00 0.00 0.00 2.57
1537 1548 1.747355 CACCCTCTGCAACCATCAATC 59.253 52.381 0.00 0.00 0.00 2.67
1541 1552 3.349927 CCTCTGCAACCATCAATCTGAA 58.650 45.455 0.00 0.00 0.00 3.02
1565 1576 2.177531 GTGCTGCACCATCGCTTG 59.822 61.111 21.78 0.00 0.00 4.01
1580 1591 2.027285 TCGCTTGGATCATCAGGTTCAA 60.027 45.455 0.00 0.00 0.00 2.69
1590 1601 0.319900 TCAGGTTCAAGCGACTCTGC 60.320 55.000 0.00 0.00 0.00 4.26
1591 1602 0.601046 CAGGTTCAAGCGACTCTGCA 60.601 55.000 0.00 0.00 37.31 4.41
1592 1603 0.320247 AGGTTCAAGCGACTCTGCAG 60.320 55.000 7.63 7.63 37.31 4.41
1594 1605 1.221414 GTTCAAGCGACTCTGCAGTT 58.779 50.000 14.67 1.39 37.31 3.16
1643 1661 2.535012 TTGAAGGCGTGACACACATA 57.465 45.000 6.37 0.00 33.40 2.29
1653 1671 4.259970 GCGTGACACACATACAGATCAATC 60.260 45.833 6.37 0.00 33.40 2.67
1664 1682 9.764870 CACATACAGATCAATCAAACTAACAAG 57.235 33.333 0.00 0.00 0.00 3.16
1675 1693 6.463995 TCAAACTAACAAGCAACCAGAAAT 57.536 33.333 0.00 0.00 0.00 2.17
1689 1707 8.037166 AGCAACCAGAAATCCTAATCAAAATTC 58.963 33.333 0.00 0.00 0.00 2.17
1712 1730 3.181516 GCATGACAGACGAGATTCAAACC 60.182 47.826 0.00 0.00 0.00 3.27
1719 1737 3.264450 AGACGAGATTCAAACCCAGGAAT 59.736 43.478 0.00 0.00 36.49 3.01
1724 1742 1.531739 TTCAAACCCAGGAATGGCGC 61.532 55.000 0.00 0.00 0.00 6.53
1740 1758 1.438651 GCGCAACCTCACACATCTAA 58.561 50.000 0.30 0.00 0.00 2.10
1743 1761 2.159841 CGCAACCTCACACATCTAAACG 60.160 50.000 0.00 0.00 0.00 3.60
1747 1765 4.442375 ACCTCACACATCTAAACGAGAG 57.558 45.455 0.00 0.00 37.70 3.20
1757 1775 1.945354 TAAACGAGAGGCTGCGGGAG 61.945 60.000 10.56 0.00 0.00 4.30
1761 1779 1.068921 GAGAGGCTGCGGGAGATTC 59.931 63.158 0.00 0.00 0.00 2.52
1798 1818 0.706729 GACCGAGAAAACACTACGCG 59.293 55.000 3.53 3.53 0.00 6.01
1921 2016 0.179056 CGAGTCACCACCAACCAACT 60.179 55.000 0.00 0.00 0.00 3.16
1922 2017 1.308998 GAGTCACCACCAACCAACTG 58.691 55.000 0.00 0.00 0.00 3.16
1924 2019 0.106918 GTCACCACCAACCAACTGGA 60.107 55.000 1.86 0.00 38.96 3.86
1925 2020 0.850100 TCACCACCAACCAACTGGAT 59.150 50.000 1.86 0.00 38.96 3.41
1926 2021 1.202879 TCACCACCAACCAACTGGATC 60.203 52.381 1.86 0.00 38.96 3.36
1927 2022 0.250727 ACCACCAACCAACTGGATCG 60.251 55.000 1.86 0.00 38.96 3.69
1928 2023 0.036164 CCACCAACCAACTGGATCGA 59.964 55.000 1.86 0.00 38.96 3.59
1929 2024 1.442769 CACCAACCAACTGGATCGAG 58.557 55.000 1.86 2.78 38.96 4.04
1930 2025 0.321653 ACCAACCAACTGGATCGAGC 60.322 55.000 4.41 0.00 38.96 5.03
1933 2028 2.892425 CCAACTGGATCGAGCGGC 60.892 66.667 4.41 0.00 37.39 6.53
1959 2054 2.068277 GAGCTCCAAATCGCCATGGC 62.068 60.000 27.67 27.67 36.62 4.40
1963 2058 1.538512 CTCCAAATCGCCATGGCTATG 59.461 52.381 33.07 23.54 39.32 2.23
1971 2074 1.871408 CGCCATGGCTATGTCTCTCAC 60.871 57.143 33.07 0.98 39.32 3.51
1973 2076 2.547642 GCCATGGCTATGTCTCTCACTC 60.548 54.545 29.98 0.00 38.26 3.51
1979 2082 2.159170 GCTATGTCTCTCACTCGCCTTT 60.159 50.000 0.00 0.00 0.00 3.11
1982 2085 1.412710 TGTCTCTCACTCGCCTTTTGT 59.587 47.619 0.00 0.00 0.00 2.83
1986 2089 2.210116 TCTCACTCGCCTTTTGTGTTC 58.790 47.619 0.00 0.00 33.82 3.18
1990 2093 0.234884 CTCGCCTTTTGTGTTCCGTC 59.765 55.000 0.00 0.00 0.00 4.79
2007 2122 2.202743 CTTCGGAATGAGCGGCGA 60.203 61.111 12.98 0.00 0.00 5.54
2023 2138 1.649390 GCGAGCGGAAGAGACAGAGA 61.649 60.000 0.00 0.00 0.00 3.10
2028 2143 1.404851 GCGGAAGAGACAGAGAAAGGG 60.405 57.143 0.00 0.00 0.00 3.95
2030 2145 2.165437 CGGAAGAGACAGAGAAAGGGAG 59.835 54.545 0.00 0.00 0.00 4.30
2031 2146 3.436243 GGAAGAGACAGAGAAAGGGAGA 58.564 50.000 0.00 0.00 0.00 3.71
2032 2147 3.447229 GGAAGAGACAGAGAAAGGGAGAG 59.553 52.174 0.00 0.00 0.00 3.20
2035 2150 4.344104 AGAGACAGAGAAAGGGAGAGAAG 58.656 47.826 0.00 0.00 0.00 2.85
2036 2151 4.044065 AGAGACAGAGAAAGGGAGAGAAGA 59.956 45.833 0.00 0.00 0.00 2.87
2082 2198 2.711922 CGGAGCTAACGGGTCTGCT 61.712 63.158 2.54 0.00 41.13 4.24
2116 2233 1.485066 GGGCCCGATAAGAAACTCAGA 59.515 52.381 5.69 0.00 0.00 3.27
2126 2243 2.502295 AGAAACTCAGAGCCAGCAAAG 58.498 47.619 0.00 0.00 0.00 2.77
2130 2247 0.035881 CTCAGAGCCAGCAAAGGACA 59.964 55.000 0.00 0.00 0.00 4.02
2134 2251 2.101249 CAGAGCCAGCAAAGGACAAAAA 59.899 45.455 0.00 0.00 0.00 1.94
2135 2252 2.363359 AGAGCCAGCAAAGGACAAAAAG 59.637 45.455 0.00 0.00 0.00 2.27
2140 2257 4.034394 GCCAGCAAAGGACAAAAAGAAAAG 59.966 41.667 0.00 0.00 0.00 2.27
2141 2258 4.571984 CCAGCAAAGGACAAAAAGAAAAGG 59.428 41.667 0.00 0.00 0.00 3.11
2167 2284 4.203618 TCTCGCGACAGAGATCGT 57.796 55.556 3.71 0.00 44.13 3.73
2171 2288 1.367782 CGCGACAGAGATCGTACGG 60.368 63.158 16.52 0.00 44.13 4.02
2211 2328 9.126151 TGAAAGCCAATTATTTTCATCCGTATA 57.874 29.630 6.94 0.00 36.28 1.47
2230 2347 9.107177 TCCGTATAAAAATTAGCAATTCCGTTA 57.893 29.630 0.00 0.00 0.00 3.18
2231 2348 9.719279 CCGTATAAAAATTAGCAATTCCGTTAA 57.281 29.630 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.357517 ACCGAGACTTGCCAAGCG 60.358 61.111 3.88 0.00 0.00 4.68
1 2 2.035442 GGACCGAGACTTGCCAAGC 61.035 63.158 3.88 0.00 0.00 4.01
2 3 0.250295 TTGGACCGAGACTTGCCAAG 60.250 55.000 2.11 2.11 33.96 3.61
3 4 0.400213 ATTGGACCGAGACTTGCCAA 59.600 50.000 0.00 0.00 42.23 4.52
4 5 0.036388 GATTGGACCGAGACTTGCCA 60.036 55.000 0.00 0.00 0.00 4.92
5 6 0.744771 GGATTGGACCGAGACTTGCC 60.745 60.000 0.00 0.00 0.00 4.52
6 7 2.768834 GGATTGGACCGAGACTTGC 58.231 57.895 0.00 0.00 0.00 4.01
18 19 4.202212 GGGGATTAAACATTTCCGGATTGG 60.202 45.833 4.15 0.00 40.09 3.16
19 20 4.404073 TGGGGATTAAACATTTCCGGATTG 59.596 41.667 4.15 9.34 0.00 2.67
20 21 4.404394 GTGGGGATTAAACATTTCCGGATT 59.596 41.667 4.15 0.00 0.00 3.01
21 22 3.958147 GTGGGGATTAAACATTTCCGGAT 59.042 43.478 4.15 0.00 0.00 4.18
22 23 3.245300 TGTGGGGATTAAACATTTCCGGA 60.245 43.478 0.00 0.00 0.00 5.14
23 24 3.093057 TGTGGGGATTAAACATTTCCGG 58.907 45.455 0.00 0.00 0.00 5.14
24 25 3.508012 TGTGTGGGGATTAAACATTTCCG 59.492 43.478 0.00 0.00 0.00 4.30
25 26 4.617298 CGTGTGTGGGGATTAAACATTTCC 60.617 45.833 0.00 0.00 0.00 3.13
26 27 4.216687 TCGTGTGTGGGGATTAAACATTTC 59.783 41.667 0.00 0.00 0.00 2.17
27 28 4.145807 TCGTGTGTGGGGATTAAACATTT 58.854 39.130 0.00 0.00 0.00 2.32
28 29 3.757270 TCGTGTGTGGGGATTAAACATT 58.243 40.909 0.00 0.00 0.00 2.71
29 30 3.426787 TCGTGTGTGGGGATTAAACAT 57.573 42.857 0.00 0.00 0.00 2.71
30 31 2.932855 TCGTGTGTGGGGATTAAACA 57.067 45.000 0.00 0.00 0.00 2.83
31 32 3.816523 TCTTTCGTGTGTGGGGATTAAAC 59.183 43.478 0.00 0.00 0.00 2.01
32 33 4.088056 TCTTTCGTGTGTGGGGATTAAA 57.912 40.909 0.00 0.00 0.00 1.52
33 34 3.773418 TCTTTCGTGTGTGGGGATTAA 57.227 42.857 0.00 0.00 0.00 1.40
34 35 3.773418 TTCTTTCGTGTGTGGGGATTA 57.227 42.857 0.00 0.00 0.00 1.75
35 36 2.649531 TTCTTTCGTGTGTGGGGATT 57.350 45.000 0.00 0.00 0.00 3.01
36 37 2.504367 CTTTCTTTCGTGTGTGGGGAT 58.496 47.619 0.00 0.00 0.00 3.85
37 38 1.961793 CTTTCTTTCGTGTGTGGGGA 58.038 50.000 0.00 0.00 0.00 4.81
38 39 0.310854 GCTTTCTTTCGTGTGTGGGG 59.689 55.000 0.00 0.00 0.00 4.96
39 40 1.308998 AGCTTTCTTTCGTGTGTGGG 58.691 50.000 0.00 0.00 0.00 4.61
40 41 3.390135 TCTAGCTTTCTTTCGTGTGTGG 58.610 45.455 0.00 0.00 0.00 4.17
41 42 5.597813 ATTCTAGCTTTCTTTCGTGTGTG 57.402 39.130 0.00 0.00 0.00 3.82
42 43 5.049405 CCAATTCTAGCTTTCTTTCGTGTGT 60.049 40.000 0.00 0.00 0.00 3.72
43 44 5.385617 CCAATTCTAGCTTTCTTTCGTGTG 58.614 41.667 0.00 0.00 0.00 3.82
44 45 4.083271 GCCAATTCTAGCTTTCTTTCGTGT 60.083 41.667 0.00 0.00 0.00 4.49
45 46 4.406943 GCCAATTCTAGCTTTCTTTCGTG 58.593 43.478 0.00 0.00 0.00 4.35
46 47 3.440522 GGCCAATTCTAGCTTTCTTTCGT 59.559 43.478 0.00 0.00 0.00 3.85
47 48 3.440173 TGGCCAATTCTAGCTTTCTTTCG 59.560 43.478 0.61 0.00 0.00 3.46
48 49 4.380973 GGTGGCCAATTCTAGCTTTCTTTC 60.381 45.833 7.24 0.00 0.00 2.62
49 50 3.511540 GGTGGCCAATTCTAGCTTTCTTT 59.488 43.478 7.24 0.00 0.00 2.52
50 51 3.092301 GGTGGCCAATTCTAGCTTTCTT 58.908 45.455 7.24 0.00 0.00 2.52
51 52 2.728007 GGTGGCCAATTCTAGCTTTCT 58.272 47.619 7.24 0.00 0.00 2.52
52 53 1.401905 CGGTGGCCAATTCTAGCTTTC 59.598 52.381 7.24 0.00 0.00 2.62
53 54 1.463674 CGGTGGCCAATTCTAGCTTT 58.536 50.000 7.24 0.00 0.00 3.51
54 55 0.394352 CCGGTGGCCAATTCTAGCTT 60.394 55.000 7.24 0.00 0.00 3.74
55 56 1.224592 CCGGTGGCCAATTCTAGCT 59.775 57.895 7.24 0.00 0.00 3.32
56 57 0.815615 CTCCGGTGGCCAATTCTAGC 60.816 60.000 7.24 0.00 0.00 3.42
57 58 0.179045 CCTCCGGTGGCCAATTCTAG 60.179 60.000 7.24 1.21 0.00 2.43
58 59 0.619255 TCCTCCGGTGGCCAATTCTA 60.619 55.000 18.03 0.00 0.00 2.10
59 60 1.915078 CTCCTCCGGTGGCCAATTCT 61.915 60.000 18.03 0.00 0.00 2.40
60 61 1.452108 CTCCTCCGGTGGCCAATTC 60.452 63.158 18.03 0.00 0.00 2.17
61 62 1.497309 TTCTCCTCCGGTGGCCAATT 61.497 55.000 18.03 0.00 0.00 2.32
62 63 1.923395 TTCTCCTCCGGTGGCCAAT 60.923 57.895 18.03 0.00 0.00 3.16
63 64 2.528127 TTCTCCTCCGGTGGCCAA 60.528 61.111 18.03 9.52 0.00 4.52
64 65 3.319198 GTTCTCCTCCGGTGGCCA 61.319 66.667 18.03 0.00 0.00 5.36
65 66 4.452733 CGTTCTCCTCCGGTGGCC 62.453 72.222 18.03 0.00 0.00 5.36
66 67 2.837371 CTTCGTTCTCCTCCGGTGGC 62.837 65.000 18.03 2.79 0.00 5.01
67 68 1.215647 CTTCGTTCTCCTCCGGTGG 59.784 63.158 16.75 16.75 0.00 4.61
68 69 1.446272 GCTTCGTTCTCCTCCGGTG 60.446 63.158 0.00 0.00 0.00 4.94
69 70 2.971452 GCTTCGTTCTCCTCCGGT 59.029 61.111 0.00 0.00 0.00 5.28
70 71 2.202623 CGCTTCGTTCTCCTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
71 72 2.881352 GCGCTTCGTTCTCCTCCG 60.881 66.667 0.00 0.00 0.00 4.63
72 73 2.509561 GGCGCTTCGTTCTCCTCC 60.510 66.667 7.64 0.00 0.00 4.30
73 74 2.881352 CGGCGCTTCGTTCTCCTC 60.881 66.667 7.64 0.00 0.00 3.71
74 75 4.436998 CCGGCGCTTCGTTCTCCT 62.437 66.667 7.64 0.00 0.00 3.69
75 76 3.927163 TTCCGGCGCTTCGTTCTCC 62.927 63.158 7.64 0.00 0.00 3.71
76 77 1.810030 ATTCCGGCGCTTCGTTCTC 60.810 57.895 7.64 0.00 0.00 2.87
77 78 2.100631 CATTCCGGCGCTTCGTTCT 61.101 57.895 7.64 0.00 0.00 3.01
78 79 2.399611 CATTCCGGCGCTTCGTTC 59.600 61.111 7.64 0.00 0.00 3.95
79 80 3.799755 GCATTCCGGCGCTTCGTT 61.800 61.111 7.64 0.00 0.00 3.85
81 82 2.794627 TTTTGCATTCCGGCGCTTCG 62.795 55.000 7.64 2.53 36.28 3.79
82 83 1.080839 TTTTGCATTCCGGCGCTTC 60.081 52.632 7.64 0.00 36.28 3.86
83 84 1.372872 GTTTTGCATTCCGGCGCTT 60.373 52.632 7.64 0.00 36.28 4.68
84 85 2.258286 GTTTTGCATTCCGGCGCT 59.742 55.556 7.64 0.00 36.28 5.92
85 86 3.171911 CGTTTTGCATTCCGGCGC 61.172 61.111 0.00 0.00 36.28 6.53
86 87 1.081774 TTCGTTTTGCATTCCGGCG 60.082 52.632 0.00 0.00 36.28 6.46
87 88 0.318275 TGTTCGTTTTGCATTCCGGC 60.318 50.000 0.00 0.00 0.00 6.13
88 89 2.126914 TTGTTCGTTTTGCATTCCGG 57.873 45.000 0.00 0.00 0.00 5.14
89 90 2.408032 CCATTGTTCGTTTTGCATTCCG 59.592 45.455 0.00 0.00 0.00 4.30
90 91 2.736192 CCCATTGTTCGTTTTGCATTCC 59.264 45.455 0.00 0.00 0.00 3.01
91 92 2.736192 CCCCATTGTTCGTTTTGCATTC 59.264 45.455 0.00 0.00 0.00 2.67
92 93 2.366916 TCCCCATTGTTCGTTTTGCATT 59.633 40.909 0.00 0.00 0.00 3.56
93 94 1.967066 TCCCCATTGTTCGTTTTGCAT 59.033 42.857 0.00 0.00 0.00 3.96
94 95 1.403814 TCCCCATTGTTCGTTTTGCA 58.596 45.000 0.00 0.00 0.00 4.08
95 96 2.517650 TTCCCCATTGTTCGTTTTGC 57.482 45.000 0.00 0.00 0.00 3.68
96 97 4.319405 GCATTTTCCCCATTGTTCGTTTTG 60.319 41.667 0.00 0.00 0.00 2.44
97 98 3.812609 GCATTTTCCCCATTGTTCGTTTT 59.187 39.130 0.00 0.00 0.00 2.43
98 99 3.070878 AGCATTTTCCCCATTGTTCGTTT 59.929 39.130 0.00 0.00 0.00 3.60
99 100 2.632512 AGCATTTTCCCCATTGTTCGTT 59.367 40.909 0.00 0.00 0.00 3.85
100 101 2.231235 GAGCATTTTCCCCATTGTTCGT 59.769 45.455 0.00 0.00 0.00 3.85
101 102 2.731968 CGAGCATTTTCCCCATTGTTCG 60.732 50.000 0.00 0.00 36.70 3.95
102 103 2.491693 TCGAGCATTTTCCCCATTGTTC 59.508 45.455 0.00 0.00 0.00 3.18
103 104 2.524306 TCGAGCATTTTCCCCATTGTT 58.476 42.857 0.00 0.00 0.00 2.83
104 105 2.214376 TCGAGCATTTTCCCCATTGT 57.786 45.000 0.00 0.00 0.00 2.71
105 106 3.450578 CATTCGAGCATTTTCCCCATTG 58.549 45.455 0.00 0.00 0.00 2.82
106 107 2.159057 GCATTCGAGCATTTTCCCCATT 60.159 45.455 0.00 0.00 0.00 3.16
107 108 1.410153 GCATTCGAGCATTTTCCCCAT 59.590 47.619 0.00 0.00 0.00 4.00
108 109 0.817013 GCATTCGAGCATTTTCCCCA 59.183 50.000 0.00 0.00 0.00 4.96
109 110 0.817013 TGCATTCGAGCATTTTCCCC 59.183 50.000 0.00 0.00 40.11 4.81
118 119 1.005557 GTTCGTCTCATGCATTCGAGC 60.006 52.381 8.78 9.34 32.39 5.03
119 120 2.028523 GTGTTCGTCTCATGCATTCGAG 59.971 50.000 0.00 1.49 32.39 4.04
120 121 1.992667 GTGTTCGTCTCATGCATTCGA 59.007 47.619 0.00 2.65 0.00 3.71
121 122 1.266550 CGTGTTCGTCTCATGCATTCG 60.267 52.381 0.00 0.00 0.00 3.34
122 123 2.425989 CGTGTTCGTCTCATGCATTC 57.574 50.000 0.00 0.00 0.00 2.67
128 129 7.633908 GCATTTGCATACGTGTTCGTCTCAT 62.634 44.000 0.00 0.00 44.39 2.90
129 130 6.413067 GCATTTGCATACGTGTTCGTCTCA 62.413 45.833 0.00 0.00 44.39 3.27
130 131 4.020420 GCATTTGCATACGTGTTCGTCTC 61.020 47.826 0.00 0.00 44.39 3.36
131 132 2.159707 GCATTTGCATACGTGTTCGTCT 60.160 45.455 0.00 0.00 44.39 4.18
132 133 2.166007 GCATTTGCATACGTGTTCGTC 58.834 47.619 0.00 0.00 44.39 4.20
133 134 2.241259 GCATTTGCATACGTGTTCGT 57.759 45.000 0.00 0.00 45.97 3.85
145 146 2.933260 TCATCATGTGCATTGCATTTGC 59.067 40.909 15.49 13.65 41.91 3.68
146 147 3.929610 TGTCATCATGTGCATTGCATTTG 59.070 39.130 15.49 14.76 41.91 2.32
147 148 4.195225 TGTCATCATGTGCATTGCATTT 57.805 36.364 15.49 2.46 41.91 2.32
148 149 3.878160 TGTCATCATGTGCATTGCATT 57.122 38.095 15.49 2.84 41.91 3.56
149 150 3.716601 CATGTCATCATGTGCATTGCAT 58.283 40.909 15.49 0.00 44.37 3.96
150 151 3.157932 CATGTCATCATGTGCATTGCA 57.842 42.857 7.38 7.38 44.37 4.08
157 158 7.066284 ATGCATCTCATATCATGTCATCATGTG 59.934 37.037 0.00 0.00 41.56 3.21
158 159 7.066284 CATGCATCTCATATCATGTCATCATGT 59.934 37.037 0.00 0.27 41.53 3.21
159 160 7.280876 TCATGCATCTCATATCATGTCATCATG 59.719 37.037 0.00 2.27 41.82 3.07
160 161 7.281100 GTCATGCATCTCATATCATGTCATCAT 59.719 37.037 0.00 0.00 37.95 2.45
161 162 6.594159 GTCATGCATCTCATATCATGTCATCA 59.406 38.462 0.00 0.00 37.95 3.07
162 163 6.594159 TGTCATGCATCTCATATCATGTCATC 59.406 38.462 0.00 0.00 37.95 2.92
163 164 6.472887 TGTCATGCATCTCATATCATGTCAT 58.527 36.000 0.00 0.00 37.95 3.06
164 165 5.860611 TGTCATGCATCTCATATCATGTCA 58.139 37.500 0.00 0.00 37.95 3.58
165 166 6.600350 GTTGTCATGCATCTCATATCATGTC 58.400 40.000 0.00 0.00 37.95 3.06
166 167 5.178809 CGTTGTCATGCATCTCATATCATGT 59.821 40.000 0.00 0.00 37.95 3.21
167 168 5.407387 TCGTTGTCATGCATCTCATATCATG 59.593 40.000 0.00 0.00 38.05 3.07
168 169 5.407691 GTCGTTGTCATGCATCTCATATCAT 59.592 40.000 0.00 0.00 33.19 2.45
169 170 4.746611 GTCGTTGTCATGCATCTCATATCA 59.253 41.667 0.00 0.00 33.19 2.15
170 171 4.746611 TGTCGTTGTCATGCATCTCATATC 59.253 41.667 0.00 0.00 33.19 1.63
171 172 4.696455 TGTCGTTGTCATGCATCTCATAT 58.304 39.130 0.00 0.00 33.19 1.78
172 173 4.122143 TGTCGTTGTCATGCATCTCATA 57.878 40.909 0.00 0.00 33.19 2.15
173 174 2.976589 TGTCGTTGTCATGCATCTCAT 58.023 42.857 0.00 0.00 35.31 2.90
174 175 2.453983 TGTCGTTGTCATGCATCTCA 57.546 45.000 0.00 0.00 0.00 3.27
175 176 2.480037 TGTTGTCGTTGTCATGCATCTC 59.520 45.455 0.00 0.00 0.00 2.75
176 177 2.493035 TGTTGTCGTTGTCATGCATCT 58.507 42.857 0.00 0.00 0.00 2.90
177 178 2.967459 TGTTGTCGTTGTCATGCATC 57.033 45.000 0.00 0.00 0.00 3.91
178 179 2.357323 TGTTGTTGTCGTTGTCATGCAT 59.643 40.909 0.00 0.00 0.00 3.96
179 180 1.740025 TGTTGTTGTCGTTGTCATGCA 59.260 42.857 0.00 0.00 0.00 3.96
180 181 2.466870 TGTTGTTGTCGTTGTCATGC 57.533 45.000 0.00 0.00 0.00 4.06
181 182 4.140963 CGTATGTTGTTGTCGTTGTCATG 58.859 43.478 0.00 0.00 0.00 3.07
182 183 3.185594 CCGTATGTTGTTGTCGTTGTCAT 59.814 43.478 0.00 0.00 0.00 3.06
183 184 2.540516 CCGTATGTTGTTGTCGTTGTCA 59.459 45.455 0.00 0.00 0.00 3.58
184 185 2.796031 TCCGTATGTTGTTGTCGTTGTC 59.204 45.455 0.00 0.00 0.00 3.18
185 186 2.798283 CTCCGTATGTTGTTGTCGTTGT 59.202 45.455 0.00 0.00 0.00 3.32
186 187 3.054166 TCTCCGTATGTTGTTGTCGTTG 58.946 45.455 0.00 0.00 0.00 4.10
187 188 3.054878 GTCTCCGTATGTTGTTGTCGTT 58.945 45.455 0.00 0.00 0.00 3.85
188 189 2.034939 TGTCTCCGTATGTTGTTGTCGT 59.965 45.455 0.00 0.00 0.00 4.34
189 190 2.668250 TGTCTCCGTATGTTGTTGTCG 58.332 47.619 0.00 0.00 0.00 4.35
190 191 5.202640 GTTTTGTCTCCGTATGTTGTTGTC 58.797 41.667 0.00 0.00 0.00 3.18
191 192 4.035909 GGTTTTGTCTCCGTATGTTGTTGT 59.964 41.667 0.00 0.00 0.00 3.32
192 193 4.035792 TGGTTTTGTCTCCGTATGTTGTTG 59.964 41.667 0.00 0.00 0.00 3.33
193 194 4.200874 TGGTTTTGTCTCCGTATGTTGTT 58.799 39.130 0.00 0.00 0.00 2.83
194 195 3.811083 TGGTTTTGTCTCCGTATGTTGT 58.189 40.909 0.00 0.00 0.00 3.32
195 196 4.062293 TCTGGTTTTGTCTCCGTATGTTG 58.938 43.478 0.00 0.00 0.00 3.33
196 197 4.345859 TCTGGTTTTGTCTCCGTATGTT 57.654 40.909 0.00 0.00 0.00 2.71
197 198 4.062991 GTTCTGGTTTTGTCTCCGTATGT 58.937 43.478 0.00 0.00 0.00 2.29
198 199 3.435671 GGTTCTGGTTTTGTCTCCGTATG 59.564 47.826 0.00 0.00 0.00 2.39
199 200 3.558533 GGGTTCTGGTTTTGTCTCCGTAT 60.559 47.826 0.00 0.00 0.00 3.06
200 201 2.224354 GGGTTCTGGTTTTGTCTCCGTA 60.224 50.000 0.00 0.00 0.00 4.02
201 202 1.476291 GGGTTCTGGTTTTGTCTCCGT 60.476 52.381 0.00 0.00 0.00 4.69
202 203 1.235724 GGGTTCTGGTTTTGTCTCCG 58.764 55.000 0.00 0.00 0.00 4.63
203 204 2.358322 TGGGTTCTGGTTTTGTCTCC 57.642 50.000 0.00 0.00 0.00 3.71
204 205 2.623416 CCTTGGGTTCTGGTTTTGTCTC 59.377 50.000 0.00 0.00 0.00 3.36
205 206 2.243736 TCCTTGGGTTCTGGTTTTGTCT 59.756 45.455 0.00 0.00 0.00 3.41
206 207 2.661718 TCCTTGGGTTCTGGTTTTGTC 58.338 47.619 0.00 0.00 0.00 3.18
207 208 2.838637 TCCTTGGGTTCTGGTTTTGT 57.161 45.000 0.00 0.00 0.00 2.83
208 209 4.479786 TTTTCCTTGGGTTCTGGTTTTG 57.520 40.909 0.00 0.00 0.00 2.44
209 210 6.816616 TTATTTTCCTTGGGTTCTGGTTTT 57.183 33.333 0.00 0.00 0.00 2.43
210 211 6.816616 TTTATTTTCCTTGGGTTCTGGTTT 57.183 33.333 0.00 0.00 0.00 3.27
211 212 8.679344 ATATTTATTTTCCTTGGGTTCTGGTT 57.321 30.769 0.00 0.00 0.00 3.67
212 213 9.421399 CTATATTTATTTTCCTTGGGTTCTGGT 57.579 33.333 0.00 0.00 0.00 4.00
213 214 8.360390 GCTATATTTATTTTCCTTGGGTTCTGG 58.640 37.037 0.00 0.00 0.00 3.86
214 215 9.136323 AGCTATATTTATTTTCCTTGGGTTCTG 57.864 33.333 0.00 0.00 0.00 3.02
215 216 9.715119 AAGCTATATTTATTTTCCTTGGGTTCT 57.285 29.630 0.00 0.00 0.00 3.01
219 220 9.893305 CGTTAAGCTATATTTATTTTCCTTGGG 57.107 33.333 0.00 0.00 0.00 4.12
220 221 9.394477 GCGTTAAGCTATATTTATTTTCCTTGG 57.606 33.333 0.00 0.00 44.04 3.61
247 248 0.882927 TCCAACTCTTGCCGTTTCCG 60.883 55.000 0.00 0.00 0.00 4.30
248 249 0.875059 CTCCAACTCTTGCCGTTTCC 59.125 55.000 0.00 0.00 0.00 3.13
249 250 1.594331 ACTCCAACTCTTGCCGTTTC 58.406 50.000 0.00 0.00 0.00 2.78
250 251 2.158871 TGTACTCCAACTCTTGCCGTTT 60.159 45.455 0.00 0.00 0.00 3.60
251 252 1.414919 TGTACTCCAACTCTTGCCGTT 59.585 47.619 0.00 0.00 0.00 4.44
252 253 1.045407 TGTACTCCAACTCTTGCCGT 58.955 50.000 0.00 0.00 0.00 5.68
253 254 2.163818 TTGTACTCCAACTCTTGCCG 57.836 50.000 0.00 0.00 0.00 5.69
254 255 4.321230 CCAATTTGTACTCCAACTCTTGCC 60.321 45.833 0.00 0.00 31.20 4.52
255 256 4.321230 CCCAATTTGTACTCCAACTCTTGC 60.321 45.833 0.00 0.00 31.20 4.01
256 257 5.070001 TCCCAATTTGTACTCCAACTCTTG 58.930 41.667 0.00 0.00 31.20 3.02
257 258 5.319043 TCCCAATTTGTACTCCAACTCTT 57.681 39.130 0.00 0.00 31.20 2.85
258 259 4.993705 TCCCAATTTGTACTCCAACTCT 57.006 40.909 0.00 0.00 31.20 3.24
259 260 5.535030 ACTTTCCCAATTTGTACTCCAACTC 59.465 40.000 0.00 0.00 31.20 3.01
260 261 5.454966 ACTTTCCCAATTTGTACTCCAACT 58.545 37.500 0.00 0.00 31.20 3.16
261 262 5.784578 ACTTTCCCAATTTGTACTCCAAC 57.215 39.130 0.00 0.00 31.20 3.77
262 263 6.834451 TGTAACTTTCCCAATTTGTACTCCAA 59.166 34.615 0.00 0.00 0.00 3.53
263 264 6.366340 TGTAACTTTCCCAATTTGTACTCCA 58.634 36.000 0.00 0.00 0.00 3.86
264 265 6.887626 TGTAACTTTCCCAATTTGTACTCC 57.112 37.500 0.00 0.00 0.00 3.85
265 266 7.175990 TGGATGTAACTTTCCCAATTTGTACTC 59.824 37.037 0.00 0.00 0.00 2.59
266 267 7.007723 TGGATGTAACTTTCCCAATTTGTACT 58.992 34.615 0.00 0.00 0.00 2.73
267 268 7.222000 TGGATGTAACTTTCCCAATTTGTAC 57.778 36.000 0.00 0.00 0.00 2.90
268 269 6.435904 CCTGGATGTAACTTTCCCAATTTGTA 59.564 38.462 0.00 0.00 0.00 2.41
269 270 5.245977 CCTGGATGTAACTTTCCCAATTTGT 59.754 40.000 0.00 0.00 0.00 2.83
270 271 5.337491 CCCTGGATGTAACTTTCCCAATTTG 60.337 44.000 0.00 0.00 0.00 2.32
271 272 4.777366 CCCTGGATGTAACTTTCCCAATTT 59.223 41.667 0.00 0.00 0.00 1.82
272 273 4.202781 ACCCTGGATGTAACTTTCCCAATT 60.203 41.667 0.00 0.00 0.00 2.32
273 274 3.336694 ACCCTGGATGTAACTTTCCCAAT 59.663 43.478 0.00 0.00 0.00 3.16
274 275 2.719705 ACCCTGGATGTAACTTTCCCAA 59.280 45.455 0.00 0.00 0.00 4.12
275 276 2.041081 CACCCTGGATGTAACTTTCCCA 59.959 50.000 0.00 0.00 0.00 4.37
276 277 2.041216 ACACCCTGGATGTAACTTTCCC 59.959 50.000 0.00 0.00 0.00 3.97
277 278 3.434940 ACACCCTGGATGTAACTTTCC 57.565 47.619 0.00 0.00 0.00 3.13
278 279 5.310451 TGTAACACCCTGGATGTAACTTTC 58.690 41.667 0.00 0.00 0.00 2.62
279 280 5.313280 TGTAACACCCTGGATGTAACTTT 57.687 39.130 0.00 0.00 0.00 2.66
280 281 4.806286 GCTGTAACACCCTGGATGTAACTT 60.806 45.833 0.00 0.00 0.00 2.66
281 282 3.307480 GCTGTAACACCCTGGATGTAACT 60.307 47.826 0.00 0.00 0.00 2.24
282 283 3.007635 GCTGTAACACCCTGGATGTAAC 58.992 50.000 0.00 0.00 0.00 2.50
283 284 2.910319 AGCTGTAACACCCTGGATGTAA 59.090 45.455 0.00 0.00 0.00 2.41
284 285 2.236146 CAGCTGTAACACCCTGGATGTA 59.764 50.000 5.25 0.00 0.00 2.29
285 286 1.003580 CAGCTGTAACACCCTGGATGT 59.996 52.381 5.25 0.00 0.00 3.06
286 287 1.679944 CCAGCTGTAACACCCTGGATG 60.680 57.143 13.81 0.00 46.04 3.51
287 288 0.620556 CCAGCTGTAACACCCTGGAT 59.379 55.000 13.81 0.00 46.04 3.41
288 289 2.066340 CCAGCTGTAACACCCTGGA 58.934 57.895 13.81 0.00 46.04 3.86
289 290 1.675641 GCCAGCTGTAACACCCTGG 60.676 63.158 13.81 11.55 45.93 4.45
290 291 1.675641 GGCCAGCTGTAACACCCTG 60.676 63.158 13.81 0.00 0.00 4.45
291 292 1.427072 AAGGCCAGCTGTAACACCCT 61.427 55.000 13.81 5.33 0.00 4.34
292 293 1.074951 AAGGCCAGCTGTAACACCC 59.925 57.895 13.81 3.05 0.00 4.61
293 294 1.244019 CCAAGGCCAGCTGTAACACC 61.244 60.000 13.81 5.94 0.00 4.16
294 295 1.866853 GCCAAGGCCAGCTGTAACAC 61.867 60.000 13.81 0.00 34.56 3.32
295 296 1.603455 GCCAAGGCCAGCTGTAACA 60.603 57.895 13.81 0.00 34.56 2.41
296 297 0.895559 AAGCCAAGGCCAGCTGTAAC 60.896 55.000 13.81 2.01 43.17 2.50
297 298 0.695924 TAAGCCAAGGCCAGCTGTAA 59.304 50.000 13.81 2.75 43.17 2.41
298 299 0.918983 ATAAGCCAAGGCCAGCTGTA 59.081 50.000 13.81 10.03 43.17 2.74
299 300 0.682209 CATAAGCCAAGGCCAGCTGT 60.682 55.000 13.81 8.45 43.17 4.40
300 301 0.682209 ACATAAGCCAAGGCCAGCTG 60.682 55.000 14.84 6.78 43.17 4.24
301 302 0.682209 CACATAAGCCAAGGCCAGCT 60.682 55.000 5.01 7.43 43.17 4.24
355 356 2.512286 CGTGTCATCGCAGGGCAT 60.512 61.111 0.00 0.00 0.00 4.40
399 400 1.215173 CCATTGCCCAAGGAGATGGTA 59.785 52.381 7.27 0.00 38.91 3.25
422 423 5.652014 TCGTCATGCCAGAATAAGGATTTTT 59.348 36.000 0.00 0.00 0.00 1.94
519 522 1.202330 CCTGGAGCTCCTTCATCACT 58.798 55.000 32.28 0.00 36.82 3.41
628 631 1.204941 CTCCTAGTCCGGGTTCAACAG 59.795 57.143 0.00 0.00 0.00 3.16
910 913 3.365265 GGCAAACGGGCAGTCCTG 61.365 66.667 0.00 0.00 44.58 3.86
929 932 0.874607 GACGTGAGACCAAACTGCGT 60.875 55.000 0.00 0.00 33.41 5.24
984 987 2.106683 CATCGAAGGGGGCAACGTC 61.107 63.158 0.00 0.00 37.60 4.34
1010 1013 0.323629 GAACGAATCCCACCAGTCCA 59.676 55.000 0.00 0.00 0.00 4.02
1391 1397 4.232091 AGTTTAGTCTGAACCTTCTCCCA 58.768 43.478 3.98 0.00 0.00 4.37
1395 1401 5.128827 TGTGTGAGTTTAGTCTGAACCTTCT 59.871 40.000 3.98 0.00 0.00 2.85
1396 1402 5.357257 TGTGTGAGTTTAGTCTGAACCTTC 58.643 41.667 3.98 0.00 0.00 3.46
1410 1416 2.038557 GTGTGAGGGGTATGTGTGAGTT 59.961 50.000 0.00 0.00 0.00 3.01
1424 1430 3.434319 GGCATGCCGTGTGTGAGG 61.434 66.667 23.48 0.00 0.00 3.86
1444 1450 6.370442 GGTGTGTGTGTGCTTTGTATATTAGA 59.630 38.462 0.00 0.00 0.00 2.10
1449 1457 4.079980 AGGTGTGTGTGTGCTTTGTATA 57.920 40.909 0.00 0.00 0.00 1.47
1455 1463 1.094785 GACAAGGTGTGTGTGTGCTT 58.905 50.000 0.00 0.00 41.96 3.91
1470 1478 2.515057 GGTGTGCCCACGTGACAA 60.515 61.111 19.30 0.00 42.80 3.18
1475 1483 3.460672 CTGACTGGTGTGCCCACGT 62.461 63.158 0.00 0.00 42.80 4.49
1482 1490 2.281761 GGTGGGCTGACTGGTGTG 60.282 66.667 0.00 0.00 0.00 3.82
1496 1504 2.343758 CCTCGAGTGGGTGTGGTG 59.656 66.667 12.31 0.00 0.00 4.17
1510 1519 0.391793 GTTGCAGAGGGTGTAGCCTC 60.392 60.000 19.72 19.72 37.43 4.70
1521 1530 4.398358 ACATTCAGATTGATGGTTGCAGAG 59.602 41.667 0.00 0.00 0.00 3.35
1522 1531 4.338012 ACATTCAGATTGATGGTTGCAGA 58.662 39.130 0.00 0.00 0.00 4.26
1523 1532 4.713824 ACATTCAGATTGATGGTTGCAG 57.286 40.909 0.00 0.00 0.00 4.41
1524 1533 4.811908 CAACATTCAGATTGATGGTTGCA 58.188 39.130 0.00 0.00 35.53 4.08
1526 1535 3.855379 CGCAACATTCAGATTGATGGTTG 59.145 43.478 14.11 14.11 40.57 3.77
1536 1547 1.575922 GCAGCACGCAACATTCAGA 59.424 52.632 0.00 0.00 41.79 3.27
1537 1548 4.141883 GCAGCACGCAACATTCAG 57.858 55.556 0.00 0.00 41.79 3.02
1547 1558 3.425713 AAGCGATGGTGCAGCACG 61.426 61.111 22.79 24.71 34.83 5.34
1561 1572 2.098770 GCTTGAACCTGATGATCCAAGC 59.901 50.000 14.44 14.44 45.95 4.01
1563 1574 2.027285 TCGCTTGAACCTGATGATCCAA 60.027 45.455 0.00 0.00 0.00 3.53
1565 1576 1.936547 GTCGCTTGAACCTGATGATCC 59.063 52.381 0.00 0.00 0.00 3.36
1567 1578 2.499289 AGAGTCGCTTGAACCTGATGAT 59.501 45.455 0.00 0.00 0.00 2.45
1575 1586 1.070309 CAACTGCAGAGTCGCTTGAAC 60.070 52.381 23.35 0.00 0.00 3.18
1590 1601 5.639082 GGTTTCTGGGATTATTTTGCAACTG 59.361 40.000 0.00 0.00 0.00 3.16
1591 1602 5.306678 TGGTTTCTGGGATTATTTTGCAACT 59.693 36.000 0.00 0.00 0.00 3.16
1592 1603 5.546526 TGGTTTCTGGGATTATTTTGCAAC 58.453 37.500 0.00 0.00 0.00 4.17
1594 1605 7.487822 TTATGGTTTCTGGGATTATTTTGCA 57.512 32.000 0.00 0.00 0.00 4.08
1600 1618 8.796475 CAATCGATTTATGGTTTCTGGGATTAT 58.204 33.333 8.21 0.00 0.00 1.28
1601 1619 7.996066 TCAATCGATTTATGGTTTCTGGGATTA 59.004 33.333 8.21 0.00 0.00 1.75
1643 1661 6.882610 TGCTTGTTAGTTTGATTGATCTGT 57.117 33.333 0.00 0.00 0.00 3.41
1653 1671 5.691754 GGATTTCTGGTTGCTTGTTAGTTTG 59.308 40.000 0.00 0.00 0.00 2.93
1664 1682 7.009540 CGAATTTTGATTAGGATTTCTGGTTGC 59.990 37.037 0.00 0.00 0.00 4.17
1675 1693 5.879777 TCTGTCATGCGAATTTTGATTAGGA 59.120 36.000 0.00 0.00 0.00 2.94
1689 1707 1.913317 TGAATCTCGTCTGTCATGCG 58.087 50.000 0.00 0.00 0.00 4.73
1712 1730 2.361610 AGGTTGCGCCATTCCTGG 60.362 61.111 4.18 0.00 46.17 4.45
1719 1737 1.965930 GATGTGTGAGGTTGCGCCA 60.966 57.895 4.18 0.00 40.61 5.69
1724 1742 4.556233 TCTCGTTTAGATGTGTGAGGTTG 58.444 43.478 0.00 0.00 0.00 3.77
1740 1758 3.764466 CTCCCGCAGCCTCTCGTT 61.764 66.667 0.00 0.00 0.00 3.85
1743 1761 1.068921 GAATCTCCCGCAGCCTCTC 59.931 63.158 0.00 0.00 0.00 3.20
1747 1765 2.109126 GTGTGAATCTCCCGCAGCC 61.109 63.158 0.00 0.00 0.00 4.85
1757 1775 4.453478 TCAGATCTGTTGCTTGTGTGAATC 59.547 41.667 21.92 0.00 0.00 2.52
1761 1779 2.225019 GGTCAGATCTGTTGCTTGTGTG 59.775 50.000 21.92 0.00 0.00 3.82
1798 1818 4.038522 TGATCCTCAGCTCTGTATGTTAGC 59.961 45.833 0.00 0.00 36.48 3.09
1840 1860 2.829384 TTGTTTCTCCAGCCCCGCT 61.829 57.895 0.00 0.00 40.77 5.52
1841 1861 2.282180 TTGTTTCTCCAGCCCCGC 60.282 61.111 0.00 0.00 0.00 6.13
1843 1863 1.072505 TCGTTGTTTCTCCAGCCCC 59.927 57.895 0.00 0.00 0.00 5.80
1899 1994 1.301479 GGTTGGTGGTGACTCGTCC 60.301 63.158 0.00 0.00 0.00 4.79
1933 2028 0.807667 CGATTTGGAGCTCACCCTCG 60.808 60.000 17.19 13.90 32.57 4.63
1939 2034 0.749091 CCATGGCGATTTGGAGCTCA 60.749 55.000 17.19 0.00 34.81 4.26
1959 2054 3.791973 AAAGGCGAGTGAGAGACATAG 57.208 47.619 0.00 0.00 0.00 2.23
1963 2058 1.795286 CACAAAAGGCGAGTGAGAGAC 59.205 52.381 0.00 0.00 35.33 3.36
1971 2074 0.234884 GACGGAACACAAAAGGCGAG 59.765 55.000 0.00 0.00 0.00 5.03
1973 2076 0.661020 AAGACGGAACACAAAAGGCG 59.339 50.000 0.00 0.00 0.00 5.52
1990 2093 2.202743 TCGCCGCTCATTCCGAAG 60.203 61.111 0.00 0.00 0.00 3.79
1995 2098 4.873129 TCCGCTCGCCGCTCATTC 62.873 66.667 0.00 0.00 36.13 2.67
2007 2122 1.548269 CCTTTCTCTGTCTCTTCCGCT 59.452 52.381 0.00 0.00 0.00 5.52
2009 2124 2.165437 CTCCCTTTCTCTGTCTCTTCCG 59.835 54.545 0.00 0.00 0.00 4.30
2054 2169 3.064987 TTAGCTCCGCTCGCTGTCC 62.065 63.158 0.00 0.00 40.44 4.02
2056 2171 2.182030 GTTAGCTCCGCTCGCTGT 59.818 61.111 0.00 0.00 40.44 4.40
2067 2182 1.848652 TTCTAGCAGACCCGTTAGCT 58.151 50.000 0.00 0.00 40.92 3.32
2082 2198 0.395173 GGGCCCGCTTGGATTTTCTA 60.395 55.000 5.69 0.00 35.39 2.10
2116 2233 2.387757 TCTTTTTGTCCTTTGCTGGCT 58.612 42.857 0.00 0.00 0.00 4.75
2126 2243 3.066203 TCGTGCTCCTTTTCTTTTTGTCC 59.934 43.478 0.00 0.00 0.00 4.02
2130 2247 5.560953 CGAGATTCGTGCTCCTTTTCTTTTT 60.561 40.000 0.00 0.00 34.72 1.94
2134 2251 2.611518 CGAGATTCGTGCTCCTTTTCT 58.388 47.619 0.00 0.00 34.72 2.52
2135 2252 1.061276 GCGAGATTCGTGCTCCTTTTC 59.939 52.381 0.17 0.00 42.81 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.