Multiple sequence alignment - TraesCS2A01G089300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G089300 chr2A 100.000 7201 0 0 1 7201 42469945 42477145 0.000000e+00 13298.0
1 TraesCS2A01G089300 chr2A 97.585 207 3 2 2294 2499 526067540 526067745 3.200000e-93 353.0
2 TraesCS2A01G089300 chr2A 92.683 82 6 0 3830 3911 42473855 42473774 1.270000e-22 119.0
3 TraesCS2A01G089300 chr2A 89.362 94 10 0 3926 4019 500525411 500525318 1.270000e-22 119.0
4 TraesCS2A01G089300 chr2A 89.362 94 10 0 3926 4019 500525868 500525775 1.270000e-22 119.0
5 TraesCS2A01G089300 chr2A 90.805 87 5 3 3828 3911 32375021 32375107 5.900000e-21 113.0
6 TraesCS2A01G089300 chr2D 95.073 1928 47 11 5140 7051 37612815 37614710 0.000000e+00 2990.0
7 TraesCS2A01G089300 chr2D 94.271 1344 62 8 2492 3830 37610187 37611520 0.000000e+00 2041.0
8 TraesCS2A01G089300 chr2D 93.810 1260 24 12 3875 5115 37611522 37612746 0.000000e+00 1845.0
9 TraesCS2A01G089300 chr2D 86.421 1436 95 29 1 1371 37607930 37609330 0.000000e+00 1480.0
10 TraesCS2A01G089300 chr2D 88.760 605 48 10 1723 2312 37609606 37610205 0.000000e+00 723.0
11 TraesCS2A01G089300 chr2D 88.542 96 11 0 3925 4020 70629289 70629194 4.560000e-22 117.0
12 TraesCS2A01G089300 chr2D 89.535 86 7 2 3830 3913 11782890 11782805 2.750000e-19 108.0
13 TraesCS2A01G089300 chr2D 100.000 34 0 0 5039 5072 37612784 37612751 6.030000e-06 63.9
14 TraesCS2A01G089300 chr2B 92.269 789 44 7 5134 5915 65374451 65375229 0.000000e+00 1103.0
15 TraesCS2A01G089300 chr2B 90.310 743 39 6 5854 6567 65375123 65375861 0.000000e+00 942.0
16 TraesCS2A01G089300 chr2B 86.576 663 58 17 4073 4714 65372073 65372725 0.000000e+00 702.0
17 TraesCS2A01G089300 chr2B 88.735 577 43 7 1724 2282 65371229 65371801 0.000000e+00 686.0
18 TraesCS2A01G089300 chr2B 92.593 432 24 4 948 1371 65370520 65370951 1.330000e-171 614.0
19 TraesCS2A01G089300 chr2B 86.364 396 24 16 324 700 65370054 65370438 8.700000e-109 405.0
20 TraesCS2A01G089300 chr2B 86.053 380 35 10 4696 5063 65374057 65374430 6.770000e-105 392.0
21 TraesCS2A01G089300 chr2B 89.153 295 23 3 6759 7051 65408481 65408768 6.870000e-95 359.0
22 TraesCS2A01G089300 chr2B 85.000 260 31 6 3570 3829 65371787 65372038 2.580000e-64 257.0
23 TraesCS2A01G089300 chr2B 93.443 122 6 1 6600 6719 65376131 65376252 5.740000e-41 180.0
24 TraesCS2A01G089300 chr2B 92.500 80 6 0 6552 6631 65376106 65376185 1.640000e-21 115.0
25 TraesCS2A01G089300 chr2B 90.698 86 6 2 3829 3912 657933819 657933904 5.900000e-21 113.0
26 TraesCS2A01G089300 chr2B 86.275 102 12 2 6950 7050 65492301 65492401 7.640000e-20 110.0
27 TraesCS2A01G089300 chr7D 88.671 865 92 3 2714 3574 232354298 232353436 0.000000e+00 1050.0
28 TraesCS2A01G089300 chr7D 87.946 224 21 4 2492 2715 232354546 232354329 7.170000e-65 259.0
29 TraesCS2A01G089300 chr7D 95.652 115 4 1 7088 7201 19699704 19699818 4.440000e-42 183.0
30 TraesCS2A01G089300 chr7D 94.545 110 5 1 7088 7196 393942145 393942036 1.240000e-37 169.0
31 TraesCS2A01G089300 chr3A 84.439 784 101 11 5133 5915 649821718 649822481 0.000000e+00 752.0
32 TraesCS2A01G089300 chr3A 81.277 705 90 24 959 1630 649819106 649819801 3.820000e-147 532.0
33 TraesCS2A01G089300 chr3A 98.469 196 1 2 2298 2492 38034043 38033849 1.920000e-90 344.0
34 TraesCS2A01G089300 chr3A 88.393 224 20 4 2491 2714 659623044 659622827 1.540000e-66 265.0
35 TraesCS2A01G089300 chr3A 94.783 115 5 1 7088 7201 644781361 644781475 2.060000e-40 178.0
36 TraesCS2A01G089300 chr3A 83.051 118 18 2 3926 4041 567569258 567569141 9.880000e-19 106.0
37 TraesCS2A01G089300 chr3A 100.000 36 0 0 2492 2527 726725580 726725545 4.660000e-07 67.6
38 TraesCS2A01G089300 chr3D 84.311 784 102 11 5133 5915 515552860 515553623 0.000000e+00 747.0
39 TraesCS2A01G089300 chr3D 81.301 615 84 16 1029 1621 515550510 515551115 3.040000e-128 470.0
40 TraesCS2A01G089300 chr3D 84.539 401 54 7 1852 2248 515551381 515551777 2.440000e-104 390.0
41 TraesCS2A01G089300 chr3D 81.768 362 48 9 4744 5099 515552510 515552859 3.290000e-73 287.0
42 TraesCS2A01G089300 chr3D 80.203 394 40 15 4245 4614 515552132 515552511 1.990000e-65 261.0
43 TraesCS2A01G089300 chr3D 87.892 223 21 5 2492 2714 525537068 525536852 2.580000e-64 257.0
44 TraesCS2A01G089300 chr3D 94.545 110 5 1 7088 7196 605639016 605638907 1.240000e-37 169.0
45 TraesCS2A01G089300 chr3D 91.954 87 5 2 3828 3912 297598043 297597957 3.530000e-23 121.0
46 TraesCS2A01G089300 chr3D 89.474 57 3 3 3819 3873 505937296 505937351 1.300000e-07 69.4
47 TraesCS2A01G089300 chr3D 100.000 29 0 0 2496 2524 580525972 580525944 4.000000e-03 54.7
48 TraesCS2A01G089300 chr3B 84.331 785 100 12 5133 5915 678020996 678021759 0.000000e+00 747.0
49 TraesCS2A01G089300 chr3B 78.054 925 141 39 959 1848 678018304 678019201 1.780000e-145 527.0
50 TraesCS2A01G089300 chr3B 85.572 402 50 7 1852 2247 678019256 678019655 1.450000e-111 414.0
51 TraesCS2A01G089300 chr3B 82.011 189 22 5 4911 5099 678020819 678020995 4.500000e-32 150.0
52 TraesCS2A01G089300 chr3B 94.643 56 3 0 775 830 114087516 114087571 3.580000e-13 87.9
53 TraesCS2A01G089300 chr3B 82.418 91 5 5 3823 3911 445886114 445886033 1.300000e-07 69.4
54 TraesCS2A01G089300 chr6B 98.953 191 2 0 2309 2499 680529245 680529435 6.920000e-90 342.0
55 TraesCS2A01G089300 chr1A 96.226 212 3 4 2309 2516 352854989 352854779 6.920000e-90 342.0
56 TraesCS2A01G089300 chr1A 83.036 224 24 9 2492 2715 131291838 131291629 2.650000e-44 191.0
57 TraesCS2A01G089300 chr7A 98.454 194 1 1 2311 2502 232764789 232764982 2.490000e-89 340.0
58 TraesCS2A01G089300 chr7A 97.462 197 4 1 2304 2499 270700252 270700448 1.160000e-87 335.0
59 TraesCS2A01G089300 chr7A 95.652 115 3 2 7089 7201 735957780 735957666 4.440000e-42 183.0
60 TraesCS2A01G089300 chr7A 95.455 110 4 1 7088 7196 718526999 718526890 2.670000e-39 174.0
61 TraesCS2A01G089300 chr5B 100.000 183 0 0 2310 2492 458934571 458934389 8.950000e-89 339.0
62 TraesCS2A01G089300 chr5B 78.224 473 88 13 5243 5709 612682087 612682550 9.140000e-74 289.0
63 TraesCS2A01G089300 chr5B 85.043 234 35 0 1075 1308 612679817 612680050 9.340000e-59 239.0
64 TraesCS2A01G089300 chr5B 96.429 84 1 2 3830 3911 263519673 263519590 3.500000e-28 137.0
65 TraesCS2A01G089300 chr4A 97.959 196 1 3 2311 2506 2037640 2037448 3.220000e-88 337.0
66 TraesCS2A01G089300 chr4A 80.913 241 36 10 1074 1308 19622545 19622309 1.600000e-41 182.0
67 TraesCS2A01G089300 chr4A 90.805 87 3 4 3830 3911 385768974 385769060 2.120000e-20 111.0
68 TraesCS2A01G089300 chr4B 95.283 212 8 2 2294 2504 673213 673003 1.160000e-87 335.0
69 TraesCS2A01G089300 chr4B 92.308 52 3 1 3823 3873 269174070 269174121 1.000000e-08 73.1
70 TraesCS2A01G089300 chr5A 77.876 452 93 6 5260 5709 619691880 619692326 2.560000e-69 274.0
71 TraesCS2A01G089300 chr5A 80.426 235 43 3 1089 1323 581488141 581487910 7.420000e-40 176.0
72 TraesCS2A01G089300 chr5A 93.043 115 5 2 7088 7201 76199718 76199606 1.610000e-36 165.0
73 TraesCS2A01G089300 chr5D 77.655 452 92 9 5260 5708 495628121 495628566 4.280000e-67 267.0
74 TraesCS2A01G089300 chr5D 84.016 244 38 1 1065 1308 495626181 495626423 4.340000e-57 233.0
75 TraesCS2A01G089300 chr5D 95.652 115 4 1 7088 7201 290387854 290387740 4.440000e-42 183.0
76 TraesCS2A01G089300 chr5D 84.677 124 16 3 3920 4041 393909995 393909873 3.530000e-23 121.0
77 TraesCS2A01G089300 chr5D 77.778 126 21 5 4063 4183 407847340 407847217 3.600000e-08 71.3
78 TraesCS2A01G089300 chr6D 93.043 115 7 1 7088 7201 280908685 280908571 4.470000e-37 167.0
79 TraesCS2A01G089300 chr6D 93.023 86 4 2 3830 3913 291237010 291236925 2.730000e-24 124.0
80 TraesCS2A01G089300 chr1B 89.474 95 9 1 3926 4019 249519974 249519880 1.270000e-22 119.0
81 TraesCS2A01G089300 chr6A 91.765 85 5 2 3829 3911 594826496 594826580 4.560000e-22 117.0
82 TraesCS2A01G089300 chrUn 87.129 101 11 2 3920 4019 7153472 7153571 5.900000e-21 113.0
83 TraesCS2A01G089300 chr7B 86.667 105 10 4 3920 4022 156623578 156623476 5.900000e-21 113.0
84 TraesCS2A01G089300 chr4D 100.000 30 0 0 2496 2525 115164485 115164514 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G089300 chr2A 42469945 42477145 7200 False 13298.0 13298 100.0000 1 7201 1 chr2A.!!$F2 7200
1 TraesCS2A01G089300 chr2D 37607930 37614710 6780 False 1815.8 2990 91.6670 1 7051 5 chr2D.!!$F1 7050
2 TraesCS2A01G089300 chr2B 65370054 65376252 6198 False 539.6 1103 89.3843 324 6719 10 chr2B.!!$F4 6395
3 TraesCS2A01G089300 chr7D 232353436 232354546 1110 True 654.5 1050 88.3085 2492 3574 2 chr7D.!!$R2 1082
4 TraesCS2A01G089300 chr3A 649819106 649822481 3375 False 642.0 752 82.8580 959 5915 2 chr3A.!!$F2 4956
5 TraesCS2A01G089300 chr3D 515550510 515553623 3113 False 431.0 747 82.4244 1029 5915 5 chr3D.!!$F2 4886
6 TraesCS2A01G089300 chr3B 678018304 678021759 3455 False 459.5 747 82.4920 959 5915 4 chr3B.!!$F2 4956
7 TraesCS2A01G089300 chr5B 612679817 612682550 2733 False 264.0 289 81.6335 1075 5709 2 chr5B.!!$F1 4634
8 TraesCS2A01G089300 chr5D 495626181 495628566 2385 False 250.0 267 80.8355 1065 5708 2 chr5D.!!$F1 4643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 97 0.027063 ACGACGAAAAGTTGCAACCG 59.973 50.0 25.62 22.34 37.78 4.44 F
114 116 0.040067 GTCGGTGGCAAAAGCTTCAG 60.040 55.0 0.00 0.00 0.00 3.02 F
779 855 0.323725 TCCCCAGCAATCTTTCAGCC 60.324 55.0 0.00 0.00 0.00 4.85 F
1413 1524 0.038892 CCCAAATGCAGTGCTGTGAC 60.039 55.0 17.60 0.00 0.00 3.67 F
2321 3580 0.031616 CTGTAGGAGAAGGGGAGCCT 60.032 60.0 0.00 0.00 34.56 4.58 F
2347 3606 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
2349 3608 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.0 12.44 0.00 40.80 3.16 F
2350 3609 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.0 12.44 0.00 40.80 3.33 F
2417 3676 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.0 0.00 0.00 37.28 3.67 F
3254 4549 0.319555 TTGATGTAGCTATCCGCCGC 60.320 55.0 0.00 0.00 40.39 6.53 F
3548 4846 0.974010 CCTGCTGCATGGGGAATGTT 60.974 55.0 1.31 0.00 38.65 2.71 F
5133 8323 0.458543 CTTAGCTCCGACGTGCACAT 60.459 55.0 18.64 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1392 0.106318 ATCAAGGGAATCAGGCCAGC 60.106 55.000 5.01 0.0 0.00 4.85 R
1391 1488 0.892755 ACAGCACTGCATTTGGGATG 59.107 50.000 3.30 0.0 0.00 3.51 R
2302 3561 0.031616 AGGCTCCCCTTCTCCTACAG 60.032 60.000 0.00 0.0 38.74 2.74 R
2341 3600 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 R
3285 4580 0.698238 TACCATTGTCTGCCCAAGCT 59.302 50.000 0.00 0.0 40.80 3.74 R
4082 5415 1.064314 AGCACCTCCGAGATACTGAGT 60.064 52.381 0.00 0.0 0.00 3.41 R
4158 5491 3.871006 CACAGTACAAAAGCAGACACTCA 59.129 43.478 0.00 0.0 0.00 3.41 R
4429 5802 9.797556 GTAATTCACCAGAAACTGTTAAAAACT 57.202 29.630 0.00 0.0 37.29 2.66 R
4436 5809 6.040504 GGGAAAGTAATTCACCAGAAACTGTT 59.959 38.462 0.00 0.0 39.98 3.16 R
5120 8310 0.315886 AGTTACATGTGCACGTCGGA 59.684 50.000 9.07 0.0 0.00 4.55 R
5549 8869 1.216444 CTGCTGCTTCTGCTCGGTA 59.784 57.895 0.00 0.0 40.48 4.02 R
7085 10706 0.035739 TTTTCTGGGTCCGCCACTAC 59.964 55.000 0.00 0.0 36.17 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 33 2.678836 TGGCGACGAGAAAAGTTTCAAA 59.321 40.909 0.00 0.00 39.61 2.69
33 35 3.486209 GGCGACGAGAAAAGTTTCAAACA 60.486 43.478 2.41 0.00 39.61 2.83
34 36 4.092816 GCGACGAGAAAAGTTTCAAACAA 58.907 39.130 2.41 0.00 39.61 2.83
81 83 1.778334 TGAAGTCATGGACAACGACG 58.222 50.000 0.00 0.00 34.60 5.12
95 97 0.027063 ACGACGAAAAGTTGCAACCG 59.973 50.000 25.62 22.34 37.78 4.44
99 101 0.656205 CGAAAAGTTGCAACCGTCGG 60.656 55.000 26.93 10.48 0.00 4.79
101 103 0.099791 AAAAGTTGCAACCGTCGGTG 59.900 50.000 25.62 13.16 35.34 4.94
114 116 0.040067 GTCGGTGGCAAAAGCTTCAG 60.040 55.000 0.00 0.00 0.00 3.02
139 142 4.222114 GACATTGAAAAGAGCTTCAACCG 58.778 43.478 0.72 0.00 45.52 4.44
146 149 3.904136 AAGAGCTTCAACCGTTTCATG 57.096 42.857 0.00 0.00 0.00 3.07
196 215 4.631773 CTGTGATGACAGGGGCAG 57.368 61.111 4.13 0.00 45.26 4.85
197 216 1.985614 CTGTGATGACAGGGGCAGA 59.014 57.895 4.13 0.00 45.26 4.26
203 222 1.346068 GATGACAGGGGCAGAGGTATC 59.654 57.143 0.00 0.00 0.00 2.24
204 223 0.339859 TGACAGGGGCAGAGGTATCT 59.660 55.000 0.00 0.00 35.63 1.98
206 225 0.339859 ACAGGGGCAGAGGTATCTCA 59.660 55.000 5.64 0.00 42.34 3.27
216 235 0.757188 AGGTATCTCACGAGGGCTGG 60.757 60.000 0.00 0.00 0.00 4.85
228 247 2.684499 GGGCTGGGAAAGAGAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
243 262 3.460868 GGGGGCGCCATGAAAAGG 61.461 66.667 30.85 0.00 0.00 3.11
248 267 3.364442 CGCCATGAAAAGGGTGCA 58.636 55.556 0.00 0.00 0.00 4.57
256 275 2.106566 TGAAAAGGGTGCATGTGTGTT 58.893 42.857 0.00 0.00 0.00 3.32
257 276 3.291584 TGAAAAGGGTGCATGTGTGTTA 58.708 40.909 0.00 0.00 0.00 2.41
258 277 3.894427 TGAAAAGGGTGCATGTGTGTTAT 59.106 39.130 0.00 0.00 0.00 1.89
259 278 5.073428 TGAAAAGGGTGCATGTGTGTTATA 58.927 37.500 0.00 0.00 0.00 0.98
260 279 5.714333 TGAAAAGGGTGCATGTGTGTTATAT 59.286 36.000 0.00 0.00 0.00 0.86
268 287 4.024977 TGCATGTGTGTTATATAAGCGCAG 60.025 41.667 11.47 9.96 0.00 5.18
303 329 4.148825 GGAGGACCTGCGCACGAT 62.149 66.667 5.66 0.00 0.00 3.73
313 339 2.138320 CTGCGCACGATAAGATCCAAT 58.862 47.619 5.66 0.00 0.00 3.16
315 341 1.461127 GCGCACGATAAGATCCAATCC 59.539 52.381 0.30 0.00 0.00 3.01
316 342 1.721389 CGCACGATAAGATCCAATCCG 59.279 52.381 0.00 0.00 0.00 4.18
321 347 4.445718 CACGATAAGATCCAATCCGAACAG 59.554 45.833 0.00 0.00 0.00 3.16
362 398 1.291184 GCAACCGGCTCAAATTTGGC 61.291 55.000 17.90 17.99 40.25 4.52
385 422 3.039588 CAACCGGCGCGTACACTT 61.040 61.111 8.43 0.00 0.00 3.16
394 431 1.135916 GCGCGTACACTTGCCATTAAA 60.136 47.619 8.43 0.00 0.00 1.52
442 484 1.756375 GCTGTGCCGCTTATCGTGAG 61.756 60.000 0.00 0.00 36.19 3.51
444 486 2.202878 TGCCGCTTATCGTGAGCC 60.203 61.111 0.00 0.00 36.81 4.70
446 488 2.658593 CCGCTTATCGTGAGCCGG 60.659 66.667 0.00 0.00 36.81 6.13
476 530 1.665916 CAGCCAGACACACCGACAG 60.666 63.158 0.00 0.00 0.00 3.51
609 663 2.904866 CCTCTCCTCTCCGCTCCG 60.905 72.222 0.00 0.00 0.00 4.63
765 841 1.685765 CGTCTCCATCTGGTCCCCA 60.686 63.158 0.00 0.00 36.34 4.96
779 855 0.323725 TCCCCAGCAATCTTTCAGCC 60.324 55.000 0.00 0.00 0.00 4.85
847 923 3.327754 CGTAGCGCGATTTCCCCG 61.328 66.667 12.10 0.00 44.77 5.73
875 951 4.500826 GTCCCCTCCCCTCCCCTC 62.501 77.778 0.00 0.00 0.00 4.30
993 1071 1.002242 TGGGAGGGTTCTTGGGGTTT 61.002 55.000 0.00 0.00 0.00 3.27
1044 1125 2.123033 GAGGAGGAGGAGGAGGGC 60.123 72.222 0.00 0.00 0.00 5.19
1311 1392 4.093998 CAGCTCAACACCTATGTAAGCTTG 59.906 45.833 9.86 0.00 38.45 4.01
1313 1394 4.256920 CTCAACACCTATGTAAGCTTGCT 58.743 43.478 15.83 4.18 38.45 3.91
1314 1395 4.002982 TCAACACCTATGTAAGCTTGCTG 58.997 43.478 15.83 7.55 38.45 4.41
1319 1400 1.945394 CTATGTAAGCTTGCTGGCCTG 59.055 52.381 15.83 4.26 0.00 4.85
1320 1401 0.329261 ATGTAAGCTTGCTGGCCTGA 59.671 50.000 14.77 0.00 0.00 3.86
1336 1420 2.751143 GCCTGATTCCCTTGATTCCTCC 60.751 54.545 0.00 0.00 0.00 4.30
1375 1472 2.229543 GCTGATTTGTGATGCCTGTGAA 59.770 45.455 0.00 0.00 0.00 3.18
1381 1478 3.701205 TGTGATGCCTGTGAATGTAGT 57.299 42.857 0.00 0.00 0.00 2.73
1383 1480 4.397420 TGTGATGCCTGTGAATGTAGTTT 58.603 39.130 0.00 0.00 0.00 2.66
1413 1524 0.038892 CCCAAATGCAGTGCTGTGAC 60.039 55.000 17.60 0.00 0.00 3.67
1417 1528 0.949397 AATGCAGTGCTGTGACTGTG 59.051 50.000 17.60 0.00 44.53 3.66
1419 1530 0.531311 TGCAGTGCTGTGACTGTGAG 60.531 55.000 17.60 0.00 44.53 3.51
1420 1531 0.249615 GCAGTGCTGTGACTGTGAGA 60.250 55.000 8.18 0.00 44.53 3.27
1421 1532 1.495878 CAGTGCTGTGACTGTGAGAC 58.504 55.000 0.00 0.00 38.88 3.36
1422 1533 1.068281 CAGTGCTGTGACTGTGAGACT 59.932 52.381 0.00 0.00 38.88 3.24
1423 1534 1.068281 AGTGCTGTGACTGTGAGACTG 59.932 52.381 0.00 0.00 0.00 3.51
1424 1535 1.114627 TGCTGTGACTGTGAGACTGT 58.885 50.000 0.00 0.00 32.79 3.55
1425 1536 1.482182 TGCTGTGACTGTGAGACTGTT 59.518 47.619 0.00 0.00 30.17 3.16
1426 1537 2.693074 TGCTGTGACTGTGAGACTGTTA 59.307 45.455 0.00 0.00 30.17 2.41
1427 1538 3.053455 GCTGTGACTGTGAGACTGTTAC 58.947 50.000 0.00 0.00 37.17 2.50
1428 1539 3.643763 CTGTGACTGTGAGACTGTTACC 58.356 50.000 0.00 0.00 36.29 2.85
1429 1540 3.296854 TGTGACTGTGAGACTGTTACCT 58.703 45.455 0.00 0.00 36.29 3.08
1430 1541 4.466827 TGTGACTGTGAGACTGTTACCTA 58.533 43.478 0.00 0.00 36.29 3.08
1437 1548 6.710744 ACTGTGAGACTGTTACCTAAAATTGG 59.289 38.462 0.00 0.00 0.00 3.16
1439 1550 6.708949 TGTGAGACTGTTACCTAAAATTGGTC 59.291 38.462 0.00 0.00 38.88 4.02
1440 1551 6.148976 GTGAGACTGTTACCTAAAATTGGTCC 59.851 42.308 0.00 0.00 38.88 4.46
1441 1552 6.183361 TGAGACTGTTACCTAAAATTGGTCCA 60.183 38.462 0.00 0.00 38.88 4.02
1479 1592 2.158986 TGTGTTGCCAATTTGGTGAAGG 60.159 45.455 16.62 0.00 40.46 3.46
1531 1647 8.936864 ACTGCAGAATATTATTAACTATTCGGC 58.063 33.333 23.35 20.29 46.53 5.54
1595 1721 7.681939 TGTACTTCAGAAAATTGGTGGTATC 57.318 36.000 0.00 0.00 0.00 2.24
1632 1758 2.945668 AGCTAAATCCCAGAAATGCGTC 59.054 45.455 0.00 0.00 0.00 5.19
1642 1768 1.480954 AGAAATGCGTCGGAGTGGTAT 59.519 47.619 0.00 0.00 0.00 2.73
1644 1770 3.321111 AGAAATGCGTCGGAGTGGTATAT 59.679 43.478 0.00 0.00 0.00 0.86
1648 1774 6.710597 AATGCGTCGGAGTGGTATATATAT 57.289 37.500 0.00 0.00 0.00 0.86
1650 1778 7.997773 ATGCGTCGGAGTGGTATATATATAT 57.002 36.000 10.10 10.10 0.00 0.86
1652 1783 9.682465 ATGCGTCGGAGTGGTATATATATATAT 57.318 33.333 17.37 17.37 33.68 0.86
1675 1907 1.079127 CCCAGAAATGCGTCGGAGT 60.079 57.895 0.00 0.00 0.00 3.85
1678 1910 0.670546 CAGAAATGCGTCGGAGTGGT 60.671 55.000 0.00 0.00 0.00 4.16
1680 1912 1.480954 AGAAATGCGTCGGAGTGGTAT 59.519 47.619 0.00 0.00 0.00 2.73
1683 1915 4.521639 AGAAATGCGTCGGAGTGGTATATA 59.478 41.667 0.00 0.00 0.00 0.86
1772 2271 2.439507 GAGAAGTGCATGGGAATCCCTA 59.560 50.000 20.55 6.40 45.70 3.53
1792 2291 9.833917 ATCCCTAGCTAATAAACTTCAGTTAAC 57.166 33.333 0.00 0.00 37.25 2.01
1804 2303 4.686554 ACTTCAGTTAACAAGAAGCTAGCG 59.313 41.667 27.18 13.36 41.80 4.26
1812 2311 1.002366 AAGAAGCTAGCGCATTCACG 58.998 50.000 11.47 0.00 39.10 4.35
1839 2339 1.379916 CCTGTTGGGCTGGATGTGA 59.620 57.895 0.00 0.00 38.33 3.58
1850 2472 2.549754 GCTGGATGTGATGGATAAACCG 59.450 50.000 0.00 0.00 42.61 4.44
1907 2532 7.234355 AGGAAAGTTTATTCTGTCTGTTCCAT 58.766 34.615 0.00 0.00 35.51 3.41
1996 2645 7.647318 TCTTGCATTTGTTGTACAATTGTGTAG 59.353 33.333 21.42 9.98 40.94 2.74
2206 3463 0.378962 TGCAGTGGTTACGTTTGCAC 59.621 50.000 0.00 0.00 39.61 4.57
2229 3488 2.234661 CTCCCTCCCTTTTTGCCAATTC 59.765 50.000 0.00 0.00 0.00 2.17
2239 3498 1.686355 TTGCCAATTCGGTGAAGTGT 58.314 45.000 6.29 0.00 36.13 3.55
2307 3566 5.929697 TTTTGAGCTGTGAATGACTGTAG 57.070 39.130 0.00 0.00 0.00 2.74
2308 3567 3.599730 TGAGCTGTGAATGACTGTAGG 57.400 47.619 0.00 0.00 0.00 3.18
2309 3568 3.165071 TGAGCTGTGAATGACTGTAGGA 58.835 45.455 0.00 0.00 0.00 2.94
2310 3569 3.194329 TGAGCTGTGAATGACTGTAGGAG 59.806 47.826 0.00 0.00 0.00 3.69
2311 3570 3.435275 AGCTGTGAATGACTGTAGGAGA 58.565 45.455 0.00 0.00 0.00 3.71
2312 3571 3.834813 AGCTGTGAATGACTGTAGGAGAA 59.165 43.478 0.00 0.00 0.00 2.87
2313 3572 4.081752 AGCTGTGAATGACTGTAGGAGAAG 60.082 45.833 0.00 0.00 0.00 2.85
2314 3573 4.753233 CTGTGAATGACTGTAGGAGAAGG 58.247 47.826 0.00 0.00 0.00 3.46
2315 3574 3.515502 TGTGAATGACTGTAGGAGAAGGG 59.484 47.826 0.00 0.00 0.00 3.95
2316 3575 3.107601 TGAATGACTGTAGGAGAAGGGG 58.892 50.000 0.00 0.00 0.00 4.79
2317 3576 3.245984 TGAATGACTGTAGGAGAAGGGGA 60.246 47.826 0.00 0.00 0.00 4.81
2318 3577 2.534042 TGACTGTAGGAGAAGGGGAG 57.466 55.000 0.00 0.00 0.00 4.30
2319 3578 1.116308 GACTGTAGGAGAAGGGGAGC 58.884 60.000 0.00 0.00 0.00 4.70
2320 3579 0.325765 ACTGTAGGAGAAGGGGAGCC 60.326 60.000 0.00 0.00 0.00 4.70
2321 3580 0.031616 CTGTAGGAGAAGGGGAGCCT 60.032 60.000 0.00 0.00 34.56 4.58
2322 3581 0.417841 TGTAGGAGAAGGGGAGCCTT 59.582 55.000 0.00 0.00 32.04 4.35
2323 3582 0.833949 GTAGGAGAAGGGGAGCCTTG 59.166 60.000 0.00 0.00 32.04 3.61
2324 3583 0.326618 TAGGAGAAGGGGAGCCTTGG 60.327 60.000 0.00 0.00 32.04 3.61
2325 3584 2.273776 GAGAAGGGGAGCCTTGGC 59.726 66.667 2.97 2.97 0.00 4.52
2326 3585 3.689002 GAGAAGGGGAGCCTTGGCG 62.689 68.421 5.95 0.00 0.00 5.69
2334 3593 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2335 3594 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2336 3595 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2337 3596 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2338 3597 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2339 3598 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2340 3599 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2345 3604 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2346 3605 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2347 3606 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2348 3607 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2349 3608 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2350 3609 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2351 3610 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2352 3611 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2353 3612 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2354 3613 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2355 3614 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2356 3615 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2357 3616 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2358 3617 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2359 3618 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2374 3633 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2375 3634 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2376 3635 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2377 3636 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2378 3637 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2379 3638 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2380 3639 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2381 3640 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2382 3641 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2383 3642 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2397 3656 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2398 3657 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2399 3658 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2400 3659 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2401 3660 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2402 3661 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2403 3662 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2404 3663 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2405 3664 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2406 3665 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2407 3666 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2408 3667 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2409 3668 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2410 3669 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2411 3670 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2412 3671 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2413 3672 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2414 3673 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2415 3674 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2416 3675 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2417 3676 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2418 3677 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2419 3678 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2420 3679 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2421 3680 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2422 3681 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2423 3682 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2424 3683 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2425 3684 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2426 3685 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2427 3686 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2428 3687 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2429 3688 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2430 3689 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2431 3690 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2432 3691 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2433 3692 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2434 3693 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2439 3698 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2440 3699 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2441 3700 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2442 3701 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2443 3702 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2444 3703 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2445 3704 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2446 3705 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2447 3706 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2448 3707 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2449 3708 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2450 3709 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2451 3710 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2452 3711 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2453 3712 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2454 3713 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2455 3714 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2456 3715 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2457 3716 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2458 3717 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2483 3742 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2484 3743 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2485 3744 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2486 3745 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2487 3746 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2488 3747 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2489 3748 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2490 3749 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2598 3857 7.609760 TTTACATAGCTATCACCACAAACTG 57.390 36.000 2.34 0.00 0.00 3.16
2699 3959 2.846532 CAGGCCCCTGACAAGGTT 59.153 61.111 8.67 0.00 46.30 3.50
2732 4024 2.300437 CCCTCGAAGTCTTCCTTGAACT 59.700 50.000 7.01 0.00 32.03 3.01
2764 4059 5.221641 CCAAGATCCATGGAGAACGGTATTA 60.222 44.000 21.33 0.00 40.56 0.98
2810 4105 0.965439 TTCCAAATTGACCAAGCCGG 59.035 50.000 0.00 0.00 42.50 6.13
3032 4327 1.074727 CCCATCACCCACCACAAAGTA 59.925 52.381 0.00 0.00 0.00 2.24
3061 4356 1.956477 GAAGCATGTTCCTGGTGTTGT 59.044 47.619 0.00 0.00 0.00 3.32
3086 4381 4.022242 CCGATCCGAGAGTAATAACCATGT 60.022 45.833 0.00 0.00 0.00 3.21
3089 4384 6.581542 CGATCCGAGAGTAATAACCATGTAAC 59.418 42.308 0.00 0.00 0.00 2.50
3106 4401 6.183360 CCATGTAACCATCTTCAGTTTCATCC 60.183 42.308 0.00 0.00 33.39 3.51
3115 4410 4.528206 TCTTCAGTTTCATCCTACAGCTCA 59.472 41.667 0.00 0.00 0.00 4.26
3231 4526 2.705220 CATGCATCACCAGTCGCG 59.295 61.111 0.00 0.00 0.00 5.87
3254 4549 0.319555 TTGATGTAGCTATCCGCCGC 60.320 55.000 0.00 0.00 40.39 6.53
3285 4580 1.993653 CTGGGCCACTTCCTGATGA 59.006 57.895 0.00 0.00 0.00 2.92
3356 4651 4.003648 AGAAGAAATTCGCGGACAGAAAT 58.996 39.130 6.13 0.00 0.00 2.17
3401 4696 2.111792 AGGCCCTTGGGTATTTTTCTGT 59.888 45.455 0.00 0.00 0.00 3.41
3425 4723 1.541588 GATTTGGCCACACAAGTCCTC 59.458 52.381 3.88 0.00 32.77 3.71
3458 4756 1.613925 CGTCTCTCCACTTCCAACAGA 59.386 52.381 0.00 0.00 0.00 3.41
3548 4846 0.974010 CCTGCTGCATGGGGAATGTT 60.974 55.000 1.31 0.00 38.65 2.71
3563 4861 5.163652 GGGGAATGTTGTCATTGTAGTAAGC 60.164 44.000 0.00 0.00 43.33 3.09
3575 4873 4.530710 TGTAGTAAGCGTTCCAGATTGT 57.469 40.909 0.00 0.00 0.00 2.71
3760 5073 9.534565 AGTTCTGTACATATACTGCATTGTAAG 57.465 33.333 0.00 0.00 31.92 2.34
3830 5146 8.486210 AGCTTCACTTATTTGTGATATGGAGTA 58.514 33.333 0.00 0.00 45.03 2.59
3831 5147 8.552034 GCTTCACTTATTTGTGATATGGAGTAC 58.448 37.037 0.00 0.00 45.03 2.73
3832 5148 9.823647 CTTCACTTATTTGTGATATGGAGTACT 57.176 33.333 0.00 0.00 45.03 2.73
3833 5149 9.817809 TTCACTTATTTGTGATATGGAGTACTC 57.182 33.333 14.87 14.87 45.03 2.59
3834 5150 8.421784 TCACTTATTTGTGATATGGAGTACTCC 58.578 37.037 31.61 31.61 44.16 3.85
3835 5151 7.657761 CACTTATTTGTGATATGGAGTACTCCC 59.342 40.741 34.05 21.12 43.27 4.30
3849 5165 7.842887 GGAGTACTCCCTCTGTAAAGAATAT 57.157 40.000 28.87 0.00 43.94 1.28
3850 5166 8.937207 GGAGTACTCCCTCTGTAAAGAATATA 57.063 38.462 28.87 0.00 43.94 0.86
3851 5167 9.364653 GGAGTACTCCCTCTGTAAAGAATATAA 57.635 37.037 28.87 0.00 43.94 0.98
3855 5171 7.958088 ACTCCCTCTGTAAAGAATATAAGAGC 58.042 38.462 0.00 0.00 31.76 4.09
3856 5172 6.982852 TCCCTCTGTAAAGAATATAAGAGCG 58.017 40.000 0.00 0.00 31.76 5.03
3857 5173 6.550108 TCCCTCTGTAAAGAATATAAGAGCGT 59.450 38.462 0.00 0.00 31.76 5.07
3858 5174 7.069578 TCCCTCTGTAAAGAATATAAGAGCGTT 59.930 37.037 0.00 0.00 31.76 4.84
3859 5175 7.711339 CCCTCTGTAAAGAATATAAGAGCGTTT 59.289 37.037 0.00 0.00 31.76 3.60
3860 5176 9.745880 CCTCTGTAAAGAATATAAGAGCGTTTA 57.254 33.333 0.00 0.00 31.76 2.01
3920 5237 6.949352 TTACGGAGGGAGTATTAACTAGTG 57.051 41.667 0.00 0.00 35.56 2.74
3982 5299 1.768870 CCACCCGGATTCAAGTCCTAT 59.231 52.381 0.73 0.00 36.07 2.57
3999 5316 7.193717 AGTCCTATACTTGGCATGAGTGCTC 62.194 48.000 7.45 0.00 43.00 4.26
4082 5415 3.942829 AGTCAATCTCAAGATTTGCCGA 58.057 40.909 2.47 0.00 42.41 5.54
4158 5491 2.029649 GGGTGAGTGTACGTGTGTATGT 60.030 50.000 0.00 0.00 32.11 2.29
4404 5777 7.115947 AACTCTAGTTAAATGAACCTTCGTTCG 59.884 37.037 0.00 0.00 42.79 3.95
4666 6045 1.382914 ACCAGGATAGGGCCAAAAGT 58.617 50.000 6.18 0.00 0.00 2.66
4829 7583 3.567576 TGCCACCGAATAAATGTTGTG 57.432 42.857 0.00 0.00 0.00 3.33
5117 8307 2.034066 GGCAGCCTGGTGCACTTA 59.966 61.111 21.31 5.47 45.93 2.24
5118 8308 2.042831 GGCAGCCTGGTGCACTTAG 61.043 63.158 21.31 14.86 45.93 2.18
5119 8309 2.694760 GCAGCCTGGTGCACTTAGC 61.695 63.158 17.98 16.13 43.41 3.09
5120 8310 1.002868 CAGCCTGGTGCACTTAGCT 60.003 57.895 17.98 18.10 45.94 3.32
5125 8315 4.187056 GGTGCACTTAGCTCCGAC 57.813 61.111 17.98 0.00 45.89 4.79
5126 8316 1.805945 GGTGCACTTAGCTCCGACG 60.806 63.158 17.98 0.00 45.89 5.12
5127 8317 1.080705 GTGCACTTAGCTCCGACGT 60.081 57.895 10.32 0.00 45.94 4.34
5128 8318 1.080772 TGCACTTAGCTCCGACGTG 60.081 57.895 0.00 0.00 45.94 4.49
5129 8319 2.445438 GCACTTAGCTCCGACGTGC 61.445 63.158 0.00 1.36 43.22 5.34
5130 8320 1.080772 CACTTAGCTCCGACGTGCA 60.081 57.895 11.62 0.00 0.00 4.57
5131 8321 1.080705 ACTTAGCTCCGACGTGCAC 60.081 57.895 6.82 6.82 0.00 4.57
5132 8322 1.080772 CTTAGCTCCGACGTGCACA 60.081 57.895 18.64 0.00 0.00 4.57
5133 8323 0.458543 CTTAGCTCCGACGTGCACAT 60.459 55.000 18.64 0.00 0.00 3.21
5134 8324 0.735978 TTAGCTCCGACGTGCACATG 60.736 55.000 18.64 3.67 0.00 3.21
5135 8325 1.873270 TAGCTCCGACGTGCACATGT 61.873 55.000 18.64 7.44 0.00 3.21
5136 8326 1.445410 GCTCCGACGTGCACATGTA 60.445 57.895 18.64 0.00 0.00 2.29
5138 8328 0.713883 CTCCGACGTGCACATGTAAC 59.286 55.000 18.64 0.00 0.00 2.50
5142 8376 2.281498 CCGACGTGCACATGTAACTATG 59.719 50.000 18.64 0.00 0.00 2.23
5163 8397 8.292448 ACTATGATGTCTTGTTTGTTTCATGTC 58.708 33.333 0.00 0.00 0.00 3.06
5297 8617 2.103941 GGATCCTGACAGATGGGAGTTC 59.896 54.545 3.84 0.00 32.28 3.01
5549 8869 0.260816 TGGAGGATAGGCTACGTGGT 59.739 55.000 0.00 0.00 0.00 4.16
5690 9010 2.676471 AAAAGGAGGCGCCGCATT 60.676 55.556 31.51 28.08 43.43 3.56
5858 9184 1.556911 GATCTGGAAGGCTCAGTGGAA 59.443 52.381 3.45 0.00 34.15 3.53
6052 9390 2.350514 GCAGCAGAACAGAGCCCT 59.649 61.111 0.00 0.00 0.00 5.19
6238 9576 0.165944 AATTGCCGCGACTTTCTTCG 59.834 50.000 8.23 0.00 42.15 3.79
6459 9815 6.600427 TGTTCTGATCTATACCGTGTAAGACA 59.400 38.462 0.00 0.00 0.00 3.41
6503 9859 4.965200 ACTCCTGTCTGGATTTATAGGC 57.035 45.455 0.00 0.00 45.16 3.93
6535 9891 5.347907 GTGGTTAGGTCGTCAATTTGACTAG 59.652 44.000 23.29 11.73 44.85 2.57
6537 9893 2.973945 AGGTCGTCAATTTGACTAGCC 58.026 47.619 23.29 20.39 44.85 3.93
6587 10200 6.638096 AACACATCAACAGAATCATGTTCA 57.362 33.333 9.64 0.00 41.41 3.18
6588 10201 6.638096 ACACATCAACAGAATCATGTTCAA 57.362 33.333 9.64 0.00 41.41 2.69
6589 10202 7.041635 ACACATCAACAGAATCATGTTCAAA 57.958 32.000 9.64 0.00 41.41 2.69
6590 10203 7.663827 ACACATCAACAGAATCATGTTCAAAT 58.336 30.769 9.64 0.00 41.41 2.32
6591 10204 7.597369 ACACATCAACAGAATCATGTTCAAATG 59.403 33.333 9.64 0.00 41.41 2.32
6592 10205 7.062956 CACATCAACAGAATCATGTTCAAATGG 59.937 37.037 9.64 0.00 41.41 3.16
6593 10206 6.897706 TCAACAGAATCATGTTCAAATGGA 57.102 33.333 9.64 0.00 41.41 3.41
6594 10207 6.916440 TCAACAGAATCATGTTCAAATGGAG 58.084 36.000 9.64 0.00 41.41 3.86
6595 10208 6.491062 TCAACAGAATCATGTTCAAATGGAGT 59.509 34.615 9.64 0.00 41.41 3.85
6596 10209 6.906157 ACAGAATCATGTTCAAATGGAGTT 57.094 33.333 9.64 0.00 0.00 3.01
6597 10210 7.294017 ACAGAATCATGTTCAAATGGAGTTT 57.706 32.000 9.64 0.00 0.00 2.66
6598 10211 7.149973 ACAGAATCATGTTCAAATGGAGTTTG 58.850 34.615 9.64 0.00 46.86 2.93
6599 10212 6.588756 CAGAATCATGTTCAAATGGAGTTTGG 59.411 38.462 9.64 0.00 45.79 3.28
6600 10213 6.494491 AGAATCATGTTCAAATGGAGTTTGGA 59.506 34.615 9.64 0.00 45.79 3.53
6601 10214 6.669125 ATCATGTTCAAATGGAGTTTGGAA 57.331 33.333 0.00 0.00 45.79 3.53
6602 10215 6.669125 TCATGTTCAAATGGAGTTTGGAAT 57.331 33.333 0.00 0.00 45.79 3.01
6603 10216 6.690530 TCATGTTCAAATGGAGTTTGGAATC 58.309 36.000 0.00 0.00 45.79 2.52
6604 10217 6.267242 TCATGTTCAAATGGAGTTTGGAATCA 59.733 34.615 0.00 0.00 45.79 2.57
6605 10218 6.669125 TGTTCAAATGGAGTTTGGAATCAT 57.331 33.333 1.21 0.00 45.79 2.45
6606 10219 6.457355 TGTTCAAATGGAGTTTGGAATCATG 58.543 36.000 1.21 0.00 45.79 3.07
6607 10220 6.041865 TGTTCAAATGGAGTTTGGAATCATGT 59.958 34.615 0.00 0.00 45.79 3.21
6608 10221 6.669125 TCAAATGGAGTTTGGAATCATGTT 57.331 33.333 0.00 0.00 45.79 2.71
6609 10222 6.690530 TCAAATGGAGTTTGGAATCATGTTC 58.309 36.000 0.00 0.00 45.79 3.18
6737 10352 5.067936 CACACCCTGGATAGAACTAGTAGTG 59.932 48.000 2.90 0.00 31.92 2.74
6749 10364 6.550163 AGAACTAGTAGTGTTTACTCCCTCA 58.450 40.000 2.90 0.00 38.36 3.86
6755 10370 5.711036 AGTAGTGTTTACTCCCTCAGTACTG 59.289 44.000 17.17 17.17 42.03 2.74
6773 10394 9.607988 TCAGTACTGAAACACTTATTTTGAGAA 57.392 29.630 23.24 0.00 36.53 2.87
6775 10396 9.832445 AGTACTGAAACACTTATTTTGAGAAGA 57.168 29.630 0.00 0.00 0.00 2.87
6781 10402 7.751768 AACACTTATTTTGAGAAGAAGGGAG 57.248 36.000 0.00 0.00 0.00 4.30
6803 10424 5.061853 AGCATTGTAGATGACCTTGCATAG 58.938 41.667 0.00 0.00 37.38 2.23
6814 10435 4.163268 TGACCTTGCATAGTAGGCATAACA 59.837 41.667 10.74 6.39 41.58 2.41
6879 10500 9.118300 ACATTTGATTTTCCATAGTTTTTGCAA 57.882 25.926 0.00 0.00 0.00 4.08
6968 10589 2.226200 TGTTGCAACGAATGATGGTCAG 59.774 45.455 23.79 0.00 0.00 3.51
6979 10600 0.608640 GATGGTCAGGAGTGGTCGTT 59.391 55.000 0.00 0.00 0.00 3.85
7009 10630 3.916172 GCACTAGTGTTGCAACAATGATG 59.084 43.478 35.44 30.85 41.21 3.07
7028 10649 2.742372 CGGCGAGTGGTCCTTTGG 60.742 66.667 0.00 0.00 0.00 3.28
7051 10672 0.455410 CACCACCTGTGTTGTGTTGG 59.545 55.000 0.00 0.00 40.26 3.77
7052 10673 0.682855 ACCACCTGTGTTGTGTTGGG 60.683 55.000 0.00 0.00 31.71 4.12
7053 10674 1.437160 CACCTGTGTTGTGTTGGGC 59.563 57.895 0.00 0.00 0.00 5.36
7054 10675 2.118404 ACCTGTGTTGTGTTGGGCG 61.118 57.895 0.00 0.00 0.00 6.13
7055 10676 2.721231 CTGTGTTGTGTTGGGCGG 59.279 61.111 0.00 0.00 0.00 6.13
7056 10677 1.821759 CTGTGTTGTGTTGGGCGGA 60.822 57.895 0.00 0.00 0.00 5.54
7057 10678 1.152860 TGTGTTGTGTTGGGCGGAT 60.153 52.632 0.00 0.00 0.00 4.18
7058 10679 0.108774 TGTGTTGTGTTGGGCGGATA 59.891 50.000 0.00 0.00 0.00 2.59
7059 10680 1.240256 GTGTTGTGTTGGGCGGATAA 58.760 50.000 0.00 0.00 0.00 1.75
7060 10681 1.199097 GTGTTGTGTTGGGCGGATAAG 59.801 52.381 0.00 0.00 0.00 1.73
7061 10682 1.072489 TGTTGTGTTGGGCGGATAAGA 59.928 47.619 0.00 0.00 0.00 2.10
7062 10683 2.290641 TGTTGTGTTGGGCGGATAAGAT 60.291 45.455 0.00 0.00 0.00 2.40
7063 10684 2.752903 GTTGTGTTGGGCGGATAAGATT 59.247 45.455 0.00 0.00 0.00 2.40
7064 10685 3.916359 TGTGTTGGGCGGATAAGATTA 57.084 42.857 0.00 0.00 0.00 1.75
7065 10686 4.431416 TGTGTTGGGCGGATAAGATTAT 57.569 40.909 0.00 0.00 0.00 1.28
7066 10687 4.787551 TGTGTTGGGCGGATAAGATTATT 58.212 39.130 0.00 0.00 0.00 1.40
7067 10688 4.819630 TGTGTTGGGCGGATAAGATTATTC 59.180 41.667 0.00 0.00 0.00 1.75
7068 10689 4.062293 TGTTGGGCGGATAAGATTATTCG 58.938 43.478 8.60 8.60 43.36 3.34
7069 10690 4.202274 TGTTGGGCGGATAAGATTATTCGA 60.202 41.667 15.74 0.00 43.22 3.71
7072 10693 2.921754 GGCGGATAAGATTATTCGACGG 59.078 50.000 15.74 0.00 43.22 4.79
7073 10694 3.572584 GCGGATAAGATTATTCGACGGT 58.427 45.455 15.74 0.00 43.22 4.83
7074 10695 4.379813 GGCGGATAAGATTATTCGACGGTA 60.380 45.833 15.74 0.00 43.22 4.02
7075 10696 5.156355 GCGGATAAGATTATTCGACGGTAA 58.844 41.667 15.74 0.00 43.22 2.85
7076 10697 5.285607 GCGGATAAGATTATTCGACGGTAAG 59.714 44.000 15.74 0.00 43.22 2.34
7077 10698 6.376978 CGGATAAGATTATTCGACGGTAAGT 58.623 40.000 7.37 0.00 43.22 2.24
7078 10699 6.522510 CGGATAAGATTATTCGACGGTAAGTC 59.477 42.308 7.37 0.00 43.22 3.01
7079 10700 6.805760 GGATAAGATTATTCGACGGTAAGTCC 59.194 42.308 0.00 0.00 46.92 3.85
7080 10701 5.848833 AAGATTATTCGACGGTAAGTCCT 57.151 39.130 0.00 0.00 46.92 3.85
7081 10702 5.435820 AGATTATTCGACGGTAAGTCCTC 57.564 43.478 0.00 0.00 46.92 3.71
7082 10703 5.131784 AGATTATTCGACGGTAAGTCCTCT 58.868 41.667 0.00 0.00 46.92 3.69
7083 10704 6.294473 AGATTATTCGACGGTAAGTCCTCTA 58.706 40.000 0.00 0.00 46.92 2.43
7084 10705 5.998454 TTATTCGACGGTAAGTCCTCTAG 57.002 43.478 0.00 0.00 46.92 2.43
7085 10706 2.322355 TCGACGGTAAGTCCTCTAGG 57.678 55.000 0.00 0.00 46.92 3.02
7086 10707 1.556911 TCGACGGTAAGTCCTCTAGGT 59.443 52.381 0.00 0.00 46.92 3.08
7087 10708 2.766263 TCGACGGTAAGTCCTCTAGGTA 59.234 50.000 0.00 0.00 46.92 3.08
7088 10709 3.129871 CGACGGTAAGTCCTCTAGGTAG 58.870 54.545 0.00 0.00 46.92 3.18
7089 10710 3.431486 CGACGGTAAGTCCTCTAGGTAGT 60.431 52.174 0.00 0.00 46.92 2.73
7090 10711 3.876320 GACGGTAAGTCCTCTAGGTAGTG 59.124 52.174 0.00 0.00 43.95 2.74
7091 10712 3.212685 CGGTAAGTCCTCTAGGTAGTGG 58.787 54.545 0.00 0.00 38.10 4.00
7092 10713 2.957680 GGTAAGTCCTCTAGGTAGTGGC 59.042 54.545 0.00 0.00 37.00 5.01
7093 10714 1.765230 AAGTCCTCTAGGTAGTGGCG 58.235 55.000 0.00 0.00 37.00 5.69
7094 10715 0.106619 AGTCCTCTAGGTAGTGGCGG 60.107 60.000 0.00 0.00 37.00 6.13
7095 10716 0.106819 GTCCTCTAGGTAGTGGCGGA 60.107 60.000 0.00 0.00 37.00 5.54
7096 10717 0.106819 TCCTCTAGGTAGTGGCGGAC 60.107 60.000 0.00 0.00 37.00 4.79
7097 10718 1.108132 CCTCTAGGTAGTGGCGGACC 61.108 65.000 0.00 0.00 35.83 4.46
7098 10719 1.076485 TCTAGGTAGTGGCGGACCC 60.076 63.158 0.00 0.00 36.27 4.46
7099 10720 1.380785 CTAGGTAGTGGCGGACCCA 60.381 63.158 0.00 0.00 42.79 4.51
7100 10721 1.380785 TAGGTAGTGGCGGACCCAG 60.381 63.158 0.00 0.00 46.54 4.45
7101 10722 1.866483 TAGGTAGTGGCGGACCCAGA 61.866 60.000 0.00 0.00 46.54 3.86
7102 10723 2.288025 GGTAGTGGCGGACCCAGAA 61.288 63.158 0.00 0.00 46.54 3.02
7103 10724 1.675219 GTAGTGGCGGACCCAGAAA 59.325 57.895 0.00 0.00 46.54 2.52
7104 10725 0.035739 GTAGTGGCGGACCCAGAAAA 59.964 55.000 0.00 0.00 46.54 2.29
7105 10726 0.766131 TAGTGGCGGACCCAGAAAAA 59.234 50.000 0.00 0.00 46.54 1.94
7124 10745 2.888834 AAAATGAAGGGTGTGCACAC 57.111 45.000 36.56 36.56 45.72 3.82
7173 10794 9.797642 AAGTGTCATATCATATATGGCAAAAGA 57.202 29.630 14.04 1.98 40.65 2.52
7174 10795 9.797642 AGTGTCATATCATATATGGCAAAAGAA 57.202 29.630 14.04 0.00 40.65 2.52
7187 10808 5.288804 TGGCAAAAGAATAACACAAAGAGC 58.711 37.500 0.00 0.00 0.00 4.09
7188 10809 5.068987 TGGCAAAAGAATAACACAAAGAGCT 59.931 36.000 0.00 0.00 0.00 4.09
7189 10810 5.631096 GGCAAAAGAATAACACAAAGAGCTC 59.369 40.000 5.27 5.27 0.00 4.09
7190 10811 6.208644 GCAAAAGAATAACACAAAGAGCTCA 58.791 36.000 17.77 0.00 0.00 4.26
7191 10812 6.697019 GCAAAAGAATAACACAAAGAGCTCAA 59.303 34.615 17.77 0.00 0.00 3.02
7192 10813 7.383300 GCAAAAGAATAACACAAAGAGCTCAAT 59.617 33.333 17.77 0.59 0.00 2.57
7193 10814 9.897744 CAAAAGAATAACACAAAGAGCTCAATA 57.102 29.630 17.77 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 1.530236 CGGTTGCAACTTTTCGTCGTT 60.530 47.619 27.64 0.00 0.00 3.85
81 83 0.379316 ACCGACGGTTGCAACTTTTC 59.621 50.000 27.64 19.10 27.29 2.29
114 116 4.494350 TGAAGCTCTTTTCAATGTCAGC 57.506 40.909 0.00 0.00 34.32 4.26
117 119 4.222114 CGGTTGAAGCTCTTTTCAATGTC 58.778 43.478 2.07 0.00 45.67 3.06
128 131 2.548057 TCACATGAAACGGTTGAAGCTC 59.452 45.455 0.00 0.00 0.00 4.09
139 142 1.369091 ATCGGCCGCTCACATGAAAC 61.369 55.000 23.51 0.00 0.00 2.78
189 208 0.757188 CGTGAGATACCTCTGCCCCT 60.757 60.000 0.00 0.00 40.10 4.79
190 209 0.755698 TCGTGAGATACCTCTGCCCC 60.756 60.000 0.00 0.00 40.10 5.80
196 215 0.671251 CAGCCCTCGTGAGATACCTC 59.329 60.000 0.00 0.00 40.84 3.85
197 216 0.757188 CCAGCCCTCGTGAGATACCT 60.757 60.000 0.00 0.00 40.84 3.08
203 222 1.078848 CTTTCCCAGCCCTCGTGAG 60.079 63.158 0.00 0.00 0.00 3.51
204 223 1.535444 TCTTTCCCAGCCCTCGTGA 60.535 57.895 0.00 0.00 0.00 4.35
206 225 1.229209 TCTCTTTCCCAGCCCTCGT 60.229 57.895 0.00 0.00 0.00 4.18
228 247 2.679996 ACCCTTTTCATGGCGCCC 60.680 61.111 26.77 6.44 0.00 6.13
238 257 7.630513 GCTTATATAACACACATGCACCCTTTT 60.631 37.037 0.00 0.00 0.00 2.27
239 258 6.183360 GCTTATATAACACACATGCACCCTTT 60.183 38.462 0.00 0.00 0.00 3.11
240 259 5.299279 GCTTATATAACACACATGCACCCTT 59.701 40.000 0.00 0.00 0.00 3.95
243 262 4.772434 CGCTTATATAACACACATGCACC 58.228 43.478 0.00 0.00 0.00 5.01
248 267 4.380531 AGCTGCGCTTATATAACACACAT 58.619 39.130 9.73 0.00 33.89 3.21
256 275 3.181523 CGAGTACGAGCTGCGCTTATATA 60.182 47.826 9.73 0.00 46.04 0.86
257 276 2.412977 CGAGTACGAGCTGCGCTTATAT 60.413 50.000 9.73 0.00 46.04 0.86
258 277 1.070108 CGAGTACGAGCTGCGCTTATA 60.070 52.381 9.73 0.00 46.04 0.98
259 278 0.317103 CGAGTACGAGCTGCGCTTAT 60.317 55.000 9.73 0.00 46.04 1.73
260 279 1.062047 CGAGTACGAGCTGCGCTTA 59.938 57.895 9.73 0.00 46.04 3.09
268 287 0.992802 CCTTTCTTGCGAGTACGAGC 59.007 55.000 0.00 8.37 42.66 5.03
279 298 1.301677 GCGCAGGTCCTCCTTTCTTG 61.302 60.000 0.30 0.00 43.07 3.02
280 299 1.003233 GCGCAGGTCCTCCTTTCTT 60.003 57.895 0.30 0.00 43.07 2.52
290 309 1.132588 GATCTTATCGTGCGCAGGTC 58.867 55.000 27.39 14.12 0.00 3.85
297 323 3.026630 TCGGATTGGATCTTATCGTGC 57.973 47.619 0.00 0.00 0.00 5.34
299 325 4.341235 TCTGTTCGGATTGGATCTTATCGT 59.659 41.667 0.00 0.00 0.00 3.73
300 326 4.681942 GTCTGTTCGGATTGGATCTTATCG 59.318 45.833 0.00 0.00 0.00 2.92
303 329 3.697542 TCGTCTGTTCGGATTGGATCTTA 59.302 43.478 0.00 0.00 0.00 2.10
313 339 2.055838 CGTTTGATTCGTCTGTTCGGA 58.944 47.619 0.00 0.00 0.00 4.55
315 341 1.461888 GCCGTTTGATTCGTCTGTTCG 60.462 52.381 0.00 0.00 0.00 3.95
316 342 1.798813 AGCCGTTTGATTCGTCTGTTC 59.201 47.619 0.00 0.00 0.00 3.18
321 347 1.134694 GCCAGCCGTTTGATTCGTC 59.865 57.895 0.00 0.00 0.00 4.20
345 381 1.288752 CGCCAAATTTGAGCCGGTT 59.711 52.632 19.86 0.00 0.00 4.44
394 431 6.160684 GGATGCGGTTAGGTTATTTTGTTTT 58.839 36.000 0.00 0.00 0.00 2.43
398 435 3.697045 TGGGATGCGGTTAGGTTATTTTG 59.303 43.478 0.00 0.00 0.00 2.44
476 530 4.778143 ATGGGCCGGAGCGACAAC 62.778 66.667 5.05 0.00 41.24 3.32
724 794 3.914733 GCGTCGCGAGCTTTAGGC 61.915 66.667 10.24 0.00 42.19 3.93
765 841 1.200948 GAAAGCGGCTGAAAGATTGCT 59.799 47.619 1.81 0.00 38.54 3.91
847 923 0.474614 GGAGGGGACAAGATAAGGCC 59.525 60.000 0.00 0.00 0.00 5.19
882 958 4.029809 GAAGGTGGGTGGGACGGG 62.030 72.222 0.00 0.00 0.00 5.28
883 959 2.928396 AGAAGGTGGGTGGGACGG 60.928 66.667 0.00 0.00 0.00 4.79
884 960 2.663196 GAGAAGGTGGGTGGGACG 59.337 66.667 0.00 0.00 0.00 4.79
885 961 2.663196 CGAGAAGGTGGGTGGGAC 59.337 66.667 0.00 0.00 0.00 4.46
934 1010 3.767816 CAAGAAGCTGCCTTGCCA 58.232 55.556 13.91 0.00 35.23 4.92
1015 1093 0.252284 TCCTCCTCCTTGACCAGACC 60.252 60.000 0.00 0.00 0.00 3.85
1311 1392 0.106318 ATCAAGGGAATCAGGCCAGC 60.106 55.000 5.01 0.00 0.00 4.85
1313 1394 1.063717 GGAATCAAGGGAATCAGGCCA 60.064 52.381 5.01 0.00 0.00 5.36
1314 1395 1.216427 AGGAATCAAGGGAATCAGGCC 59.784 52.381 0.00 0.00 0.00 5.19
1319 1400 2.092212 TGCAGGAGGAATCAAGGGAATC 60.092 50.000 0.00 0.00 0.00 2.52
1320 1401 1.925255 TGCAGGAGGAATCAAGGGAAT 59.075 47.619 0.00 0.00 0.00 3.01
1391 1488 0.892755 ACAGCACTGCATTTGGGATG 59.107 50.000 3.30 0.00 0.00 3.51
1392 1489 0.892755 CACAGCACTGCATTTGGGAT 59.107 50.000 3.30 0.00 0.00 3.85
1404 1515 1.202463 ACAGTCTCACAGTCACAGCAC 60.202 52.381 0.00 0.00 0.00 4.40
1413 1524 6.710744 ACCAATTTTAGGTAACAGTCTCACAG 59.289 38.462 0.00 0.00 37.67 3.66
1417 1528 6.235664 TGGACCAATTTTAGGTAACAGTCTC 58.764 40.000 0.00 0.00 40.09 3.36
1419 1530 6.887626 TTGGACCAATTTTAGGTAACAGTC 57.112 37.500 1.69 0.00 40.09 3.51
1420 1531 6.780522 ACATTGGACCAATTTTAGGTAACAGT 59.219 34.615 17.42 4.93 40.09 3.55
1421 1532 7.227049 ACATTGGACCAATTTTAGGTAACAG 57.773 36.000 17.42 4.31 40.09 3.16
1422 1533 7.094118 GCTACATTGGACCAATTTTAGGTAACA 60.094 37.037 17.42 0.00 40.09 2.41
1423 1534 7.255569 GCTACATTGGACCAATTTTAGGTAAC 58.744 38.462 17.42 7.89 40.09 2.50
1424 1535 6.378848 GGCTACATTGGACCAATTTTAGGTAA 59.621 38.462 17.42 0.00 40.09 2.85
1425 1536 5.889289 GGCTACATTGGACCAATTTTAGGTA 59.111 40.000 17.42 13.96 40.09 3.08
1426 1537 4.709886 GGCTACATTGGACCAATTTTAGGT 59.290 41.667 17.42 13.59 43.46 3.08
1427 1538 4.709397 TGGCTACATTGGACCAATTTTAGG 59.291 41.667 17.42 8.33 31.05 2.69
1428 1539 5.913137 TGGCTACATTGGACCAATTTTAG 57.087 39.130 17.42 19.01 31.05 1.85
1429 1540 6.865834 AATGGCTACATTGGACCAATTTTA 57.134 33.333 17.42 10.42 45.27 1.52
1430 1541 5.760484 AATGGCTACATTGGACCAATTTT 57.240 34.783 17.42 9.82 45.27 1.82
1595 1721 5.673337 TTTAGCTCTGCTTGTTTAGTGTG 57.327 39.130 0.00 0.00 40.44 3.82
1648 1774 6.548251 TCCGACGCATTTCTGGGATATATATA 59.452 38.462 0.00 0.00 38.61 0.86
1650 1778 4.707934 TCCGACGCATTTCTGGGATATATA 59.292 41.667 0.00 0.00 38.61 0.86
1652 1783 2.894765 TCCGACGCATTTCTGGGATATA 59.105 45.455 0.00 0.00 38.61 0.86
1792 2291 1.267235 CGTGAATGCGCTAGCTTCTTG 60.267 52.381 13.93 0.00 45.42 3.02
1800 2299 3.123959 GGTAAAGTTTCGTGAATGCGCTA 59.876 43.478 9.73 0.00 0.00 4.26
1802 2301 2.095919 AGGTAAAGTTTCGTGAATGCGC 60.096 45.455 0.00 0.00 0.00 6.09
1804 2303 4.483476 ACAGGTAAAGTTTCGTGAATGC 57.517 40.909 11.89 0.00 0.00 3.56
1812 2311 2.296190 CCAGCCCAACAGGTAAAGTTTC 59.704 50.000 0.00 0.00 38.26 2.78
1839 2339 9.219603 CTTAATGATGACATACGGTTTATCCAT 57.780 33.333 0.00 0.00 35.50 3.41
1907 2532 2.355716 GCAGGGTAAGGATAAGTGCACA 60.356 50.000 21.04 0.00 0.00 4.57
1996 2645 5.411053 GGAGCTCTAATATGAAGGCATGAAC 59.589 44.000 14.64 0.00 35.94 3.18
2206 3463 1.305297 GGCAAAAAGGGAGGGAGGG 60.305 63.158 0.00 0.00 0.00 4.30
2288 3547 3.165071 TCCTACAGTCATTCACAGCTCA 58.835 45.455 0.00 0.00 0.00 4.26
2290 3549 3.435275 TCTCCTACAGTCATTCACAGCT 58.565 45.455 0.00 0.00 0.00 4.24
2291 3550 3.876274 TCTCCTACAGTCATTCACAGC 57.124 47.619 0.00 0.00 0.00 4.40
2292 3551 4.382470 CCCTTCTCCTACAGTCATTCACAG 60.382 50.000 0.00 0.00 0.00 3.66
2293 3552 3.515502 CCCTTCTCCTACAGTCATTCACA 59.484 47.826 0.00 0.00 0.00 3.58
2294 3553 3.118592 CCCCTTCTCCTACAGTCATTCAC 60.119 52.174 0.00 0.00 0.00 3.18
2295 3554 3.107601 CCCCTTCTCCTACAGTCATTCA 58.892 50.000 0.00 0.00 0.00 2.57
2296 3555 3.375699 TCCCCTTCTCCTACAGTCATTC 58.624 50.000 0.00 0.00 0.00 2.67
2297 3556 3.379452 CTCCCCTTCTCCTACAGTCATT 58.621 50.000 0.00 0.00 0.00 2.57
2298 3557 2.957312 GCTCCCCTTCTCCTACAGTCAT 60.957 54.545 0.00 0.00 0.00 3.06
2299 3558 1.619977 GCTCCCCTTCTCCTACAGTCA 60.620 57.143 0.00 0.00 0.00 3.41
2300 3559 1.116308 GCTCCCCTTCTCCTACAGTC 58.884 60.000 0.00 0.00 0.00 3.51
2301 3560 0.325765 GGCTCCCCTTCTCCTACAGT 60.326 60.000 0.00 0.00 0.00 3.55
2302 3561 0.031616 AGGCTCCCCTTCTCCTACAG 60.032 60.000 0.00 0.00 38.74 2.74
2303 3562 2.106125 AGGCTCCCCTTCTCCTACA 58.894 57.895 0.00 0.00 38.74 2.74
2316 3575 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2317 3576 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2318 3577 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2319 3578 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2320 3579 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2321 3580 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2322 3581 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2323 3582 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2327 3586 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2328 3587 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2329 3588 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2330 3589 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2331 3590 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2332 3591 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2333 3592 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2334 3593 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2335 3594 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2336 3595 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2337 3596 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2338 3597 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2339 3598 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2340 3599 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2341 3600 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2342 3601 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2354 3613 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2355 3614 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2356 3615 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2357 3616 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2358 3617 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2359 3618 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2360 3619 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2361 3620 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2362 3621 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2363 3622 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2364 3623 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2365 3624 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2366 3625 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2367 3626 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2368 3627 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2369 3628 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2370 3629 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2371 3630 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2372 3631 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2373 3632 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2374 3633 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2375 3634 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2387 3646 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2388 3647 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2389 3648 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2390 3649 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2391 3650 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2392 3651 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2393 3652 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2394 3653 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2395 3654 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2396 3655 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2397 3656 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2398 3657 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2399 3658 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2400 3659 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2401 3660 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2402 3661 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2403 3662 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2404 3663 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2405 3664 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2406 3665 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2407 3666 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2408 3667 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2409 3668 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2410 3669 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2411 3670 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2412 3671 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2413 3672 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2423 3682 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2424 3683 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2425 3684 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2426 3685 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2427 3686 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2428 3687 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2429 3688 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2430 3689 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2431 3690 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2432 3691 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2433 3692 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2434 3693 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2435 3694 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2436 3695 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2437 3696 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2438 3697 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2439 3698 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2440 3699 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2441 3700 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2453 3712 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2456 3715 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2457 3716 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2458 3717 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2459 3718 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2465 3724 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2466 3725 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2467 3726 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2468 3727 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2469 3728 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2481 3740 3.181476 ACAGTCATTCACAAAAGGGCAAC 60.181 43.478 0.00 0.00 0.00 4.17
2482 3741 3.030291 ACAGTCATTCACAAAAGGGCAA 58.970 40.909 0.00 0.00 0.00 4.52
2483 3742 2.665165 ACAGTCATTCACAAAAGGGCA 58.335 42.857 0.00 0.00 0.00 5.36
2484 3743 3.191371 CCTACAGTCATTCACAAAAGGGC 59.809 47.826 0.00 0.00 0.00 5.19
2485 3744 4.651778 TCCTACAGTCATTCACAAAAGGG 58.348 43.478 0.00 0.00 0.00 3.95
2486 3745 5.551233 TCTCCTACAGTCATTCACAAAAGG 58.449 41.667 0.00 0.00 0.00 3.11
2487 3746 6.226787 ACTCTCCTACAGTCATTCACAAAAG 58.773 40.000 0.00 0.00 0.00 2.27
2488 3747 6.174720 ACTCTCCTACAGTCATTCACAAAA 57.825 37.500 0.00 0.00 0.00 2.44
2489 3748 5.808366 ACTCTCCTACAGTCATTCACAAA 57.192 39.130 0.00 0.00 0.00 2.83
2490 3749 5.808366 AACTCTCCTACAGTCATTCACAA 57.192 39.130 0.00 0.00 0.00 3.33
2533 3792 7.699709 TGTACCCCTGATCCTTGATTAATAA 57.300 36.000 0.00 0.00 0.00 1.40
2631 3891 8.627208 AAAAGACTCTTGCTAATCAGAATTGA 57.373 30.769 0.00 0.00 37.81 2.57
2690 3950 4.340617 GGGGTTCATAATCAACCTTGTCA 58.659 43.478 1.78 0.00 42.73 3.58
2691 3951 3.699538 GGGGGTTCATAATCAACCTTGTC 59.300 47.826 1.78 0.00 42.73 3.18
2699 3959 3.112263 ACTTCGAGGGGGTTCATAATCA 58.888 45.455 0.00 0.00 0.00 2.57
2732 4024 1.213678 CCATGGATCTTGGCTCAGGAA 59.786 52.381 5.56 0.00 0.00 3.36
2764 4059 7.989170 GGAAAGAAATGGCCTCATATTCAAAAT 59.011 33.333 3.32 0.00 32.44 1.82
2810 4105 4.051237 GTTCATGGAGCTTTTTGTGGTTC 58.949 43.478 0.00 0.00 0.00 3.62
3018 4313 2.235402 CCGTAGATACTTTGTGGTGGGT 59.765 50.000 0.00 0.00 0.00 4.51
3032 4327 1.571919 GAACATGCTTCGCCGTAGAT 58.428 50.000 0.00 0.00 0.00 1.98
3061 4356 2.295349 GGTTATTACTCTCGGATCGGCA 59.705 50.000 0.00 0.00 0.00 5.69
3086 4381 7.252612 TGTAGGATGAAACTGAAGATGGTTA 57.747 36.000 0.00 0.00 0.00 2.85
3089 4384 4.574013 GCTGTAGGATGAAACTGAAGATGG 59.426 45.833 0.00 0.00 0.00 3.51
3106 4401 4.574013 GTGGATCTGGAAATTGAGCTGTAG 59.426 45.833 0.00 0.00 0.00 2.74
3115 4410 7.890127 TGATTCTTACAAGTGGATCTGGAAATT 59.110 33.333 0.00 0.00 0.00 1.82
3231 4526 2.135933 GCGGATAGCTACATCAACACC 58.864 52.381 0.00 0.00 44.04 4.16
3285 4580 0.698238 TACCATTGTCTGCCCAAGCT 59.302 50.000 0.00 0.00 40.80 3.74
3401 4696 2.622942 GACTTGTGTGGCCAAATCTTCA 59.377 45.455 7.24 0.00 0.00 3.02
3425 4723 3.384789 TGGAGAGACGACATTATTCTGGG 59.615 47.826 0.00 0.00 0.00 4.45
3482 4780 3.137913 AGAGCTCATCCAACTAATGCCAT 59.862 43.478 17.77 0.00 0.00 4.40
3543 4841 6.348213 GGAACGCTTACTACAATGACAACATT 60.348 38.462 0.00 0.00 46.10 2.71
3548 4846 4.021807 TCTGGAACGCTTACTACAATGACA 60.022 41.667 0.00 0.00 0.00 3.58
3563 4861 4.083324 AGCAACATACAACAATCTGGAACG 60.083 41.667 0.00 0.00 0.00 3.95
3575 4873 2.945440 GCATGGAGGGAGCAACATACAA 60.945 50.000 0.00 0.00 0.00 2.41
3749 5062 5.940192 TCAACCAGTAACTTACAATGCAG 57.060 39.130 0.00 0.00 0.00 4.41
3830 5146 7.255660 CGCTCTTATATTCTTTACAGAGGGAGT 60.256 40.741 5.38 0.00 41.49 3.85
3831 5147 7.087639 CGCTCTTATATTCTTTACAGAGGGAG 58.912 42.308 5.38 0.00 41.49 4.30
3832 5148 6.550108 ACGCTCTTATATTCTTTACAGAGGGA 59.450 38.462 15.53 0.00 41.49 4.20
3833 5149 6.750148 ACGCTCTTATATTCTTTACAGAGGG 58.250 40.000 8.93 8.93 43.44 4.30
3834 5150 8.649973 AAACGCTCTTATATTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
3848 5164 8.688151 ACTCTTTAGTGATCTAAACGCTCTTAT 58.312 33.333 0.00 0.00 40.05 1.73
3849 5165 8.053026 ACTCTTTAGTGATCTAAACGCTCTTA 57.947 34.615 0.00 0.00 40.05 2.10
3850 5166 6.926313 ACTCTTTAGTGATCTAAACGCTCTT 58.074 36.000 0.00 0.00 40.05 2.85
3851 5167 6.518208 ACTCTTTAGTGATCTAAACGCTCT 57.482 37.500 0.00 0.00 40.05 4.09
3865 5181 6.518208 AGAGCGTTTAGATCACTCTTTAGT 57.482 37.500 0.00 0.00 37.82 2.24
3869 5185 9.685828 GAATATAAGAGCGTTTAGATCACTCTT 57.314 33.333 8.46 8.46 46.50 2.85
3870 5186 9.073475 AGAATATAAGAGCGTTTAGATCACTCT 57.927 33.333 0.00 0.00 39.34 3.24
3871 5187 9.685828 AAGAATATAAGAGCGTTTAGATCACTC 57.314 33.333 0.00 0.00 37.82 3.51
3920 5237 3.702045 ACCTAACCATCTGAGCTACACTC 59.298 47.826 0.00 0.00 46.45 3.51
4003 5320 9.479549 AGGAAGCATGGAATAAATCTAAGAAAA 57.520 29.630 0.00 0.00 0.00 2.29
4024 5341 3.184581 GCTCGTAATAAATCGCCAGGAAG 59.815 47.826 0.00 0.00 0.00 3.46
4082 5415 1.064314 AGCACCTCCGAGATACTGAGT 60.064 52.381 0.00 0.00 0.00 3.41
4158 5491 3.871006 CACAGTACAAAAGCAGACACTCA 59.129 43.478 0.00 0.00 0.00 3.41
4429 5802 9.797556 GTAATTCACCAGAAACTGTTAAAAACT 57.202 29.630 0.00 0.00 37.29 2.66
4430 5803 9.797556 AGTAATTCACCAGAAACTGTTAAAAAC 57.202 29.630 0.00 0.00 37.29 2.43
4434 5807 8.626526 GGAAAGTAATTCACCAGAAACTGTTAA 58.373 33.333 0.00 0.00 39.98 2.01
4435 5808 7.229907 GGGAAAGTAATTCACCAGAAACTGTTA 59.770 37.037 0.00 0.00 39.98 2.41
4436 5809 6.040504 GGGAAAGTAATTCACCAGAAACTGTT 59.959 38.462 0.00 0.00 39.98 3.16
4666 6045 2.904866 GAGGTGGTGCGGTGCAAA 60.905 61.111 0.00 0.00 41.47 3.68
5115 8305 0.735978 CATGTGCACGTCGGAGCTAA 60.736 55.000 9.07 0.00 0.00 3.09
5117 8307 1.873270 TACATGTGCACGTCGGAGCT 61.873 55.000 9.07 0.00 0.00 4.09
5118 8308 1.011968 TTACATGTGCACGTCGGAGC 61.012 55.000 9.07 0.58 0.00 4.70
5119 8309 0.713883 GTTACATGTGCACGTCGGAG 59.286 55.000 9.07 0.04 0.00 4.63
5120 8310 0.315886 AGTTACATGTGCACGTCGGA 59.684 50.000 9.07 0.00 0.00 4.55
5122 8312 3.175929 TCATAGTTACATGTGCACGTCG 58.824 45.455 9.07 7.71 0.00 5.12
5124 8314 4.503910 ACATCATAGTTACATGTGCACGT 58.496 39.130 13.13 9.52 29.36 4.49
5125 8315 4.805719 AGACATCATAGTTACATGTGCACG 59.194 41.667 13.13 0.65 30.71 5.34
5126 8316 6.092670 ACAAGACATCATAGTTACATGTGCAC 59.907 38.462 10.75 10.75 30.71 4.57
5127 8317 6.172630 ACAAGACATCATAGTTACATGTGCA 58.827 36.000 9.11 0.00 30.71 4.57
5128 8318 6.668541 ACAAGACATCATAGTTACATGTGC 57.331 37.500 9.11 1.02 30.71 4.57
5129 8319 8.506437 ACAAACAAGACATCATAGTTACATGTG 58.494 33.333 9.11 0.00 30.71 3.21
5130 8320 8.621532 ACAAACAAGACATCATAGTTACATGT 57.378 30.769 2.69 2.69 33.32 3.21
5131 8321 9.897744 AAACAAACAAGACATCATAGTTACATG 57.102 29.630 0.00 0.00 0.00 3.21
5133 8323 9.114952 TGAAACAAACAAGACATCATAGTTACA 57.885 29.630 0.00 0.00 0.00 2.41
5136 8326 8.632679 ACATGAAACAAACAAGACATCATAGTT 58.367 29.630 0.00 0.00 0.00 2.24
5138 8328 7.479603 CGACATGAAACAAACAAGACATCATAG 59.520 37.037 0.00 0.00 0.00 2.23
5142 8376 5.747565 TCGACATGAAACAAACAAGACATC 58.252 37.500 0.00 0.00 0.00 3.06
5297 8617 1.379527 GTAGGAAACCCTCATTGGCG 58.620 55.000 0.00 0.00 35.26 5.69
5549 8869 1.216444 CTGCTGCTTCTGCTCGGTA 59.784 57.895 0.00 0.00 40.48 4.02
5690 9010 1.407656 AAGCTTCAGGTCCACCGTCA 61.408 55.000 0.00 0.00 42.08 4.35
5858 9184 0.820871 GGATCTCGTCAGCAAGGAGT 59.179 55.000 8.19 0.00 40.16 3.85
5866 9192 1.819229 CCAGGTGGGATCTCGTCAG 59.181 63.158 0.00 0.00 40.01 3.51
6238 9576 2.945668 GCAGGGTGGATAGATGAAACAC 59.054 50.000 0.00 0.00 0.00 3.32
6459 9815 7.336396 AGTACAACTTTAGTCCACAAAAGACT 58.664 34.615 0.00 0.00 46.22 3.24
6503 9859 3.000727 GACGACCTAACCACAAAGATGG 58.999 50.000 0.00 0.00 46.10 3.51
6568 10181 7.317390 TCCATTTGAACATGATTCTGTTGATG 58.683 34.615 0.00 0.00 39.40 3.07
6587 10200 6.669125 TGAACATGATTCCAAACTCCATTT 57.331 33.333 0.00 0.00 0.00 2.32
6588 10201 6.669125 TTGAACATGATTCCAAACTCCATT 57.331 33.333 0.00 0.00 0.00 3.16
6589 10202 6.669125 TTTGAACATGATTCCAAACTCCAT 57.331 33.333 0.00 0.00 0.00 3.41
6590 10203 6.457355 CATTTGAACATGATTCCAAACTCCA 58.543 36.000 0.00 0.00 32.26 3.86
6591 10204 5.870978 CCATTTGAACATGATTCCAAACTCC 59.129 40.000 0.00 0.00 32.26 3.85
6592 10205 6.690530 TCCATTTGAACATGATTCCAAACTC 58.309 36.000 0.00 0.00 32.26 3.01
6593 10206 6.268387 ACTCCATTTGAACATGATTCCAAACT 59.732 34.615 0.00 0.00 32.26 2.66
6594 10207 6.458210 ACTCCATTTGAACATGATTCCAAAC 58.542 36.000 0.00 0.00 32.26 2.93
6595 10208 6.669125 ACTCCATTTGAACATGATTCCAAA 57.331 33.333 0.00 4.52 33.72 3.28
6596 10209 6.669125 AACTCCATTTGAACATGATTCCAA 57.331 33.333 0.00 0.00 0.00 3.53
6597 10210 6.669125 AAACTCCATTTGAACATGATTCCA 57.331 33.333 0.00 0.00 0.00 3.53
6609 10222 9.656040 TTTGAATATGATTCCAAACTCCATTTG 57.344 29.630 0.00 0.00 46.32 2.32
6737 10352 5.695363 GTGTTTCAGTACTGAGGGAGTAAAC 59.305 44.000 23.97 21.73 38.96 2.01
6749 10364 9.832445 TCTTCTCAAAATAAGTGTTTCAGTACT 57.168 29.630 0.00 0.00 0.00 2.73
6755 10370 8.166422 TCCCTTCTTCTCAAAATAAGTGTTTC 57.834 34.615 0.00 0.00 0.00 2.78
6773 10394 3.135530 GGTCATCTACAATGCTCCCTTCT 59.864 47.826 0.00 0.00 0.00 2.85
6775 10396 3.118531 AGGTCATCTACAATGCTCCCTT 58.881 45.455 0.00 0.00 0.00 3.95
6781 10402 4.818546 ACTATGCAAGGTCATCTACAATGC 59.181 41.667 0.00 0.00 40.02 3.56
6865 10486 8.706492 AATACACATGATTGCAAAAACTATGG 57.294 30.769 1.71 2.05 0.00 2.74
6955 10576 1.208052 ACCACTCCTGACCATCATTCG 59.792 52.381 0.00 0.00 0.00 3.34
6968 10589 1.635663 CGATGCCAAACGACCACTCC 61.636 60.000 0.00 0.00 0.00 3.85
6979 10600 1.155889 CAACACTAGTGCGATGCCAA 58.844 50.000 22.90 0.00 0.00 4.52
7009 10630 4.699522 AAAGGACCACTCGCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
7038 10659 1.172180 ATCCGCCCAACACAACACAG 61.172 55.000 0.00 0.00 0.00 3.66
7051 10672 2.921754 CCGTCGAATAATCTTATCCGCC 59.078 50.000 0.00 0.00 0.00 6.13
7052 10673 3.572584 ACCGTCGAATAATCTTATCCGC 58.427 45.455 0.00 0.00 0.00 5.54
7053 10674 6.376978 ACTTACCGTCGAATAATCTTATCCG 58.623 40.000 0.00 0.00 0.00 4.18
7054 10675 6.805760 GGACTTACCGTCGAATAATCTTATCC 59.194 42.308 0.00 0.00 43.79 2.59
7055 10676 7.592051 AGGACTTACCGTCGAATAATCTTATC 58.408 38.462 0.00 0.00 43.79 1.75
7056 10677 7.447853 AGAGGACTTACCGTCGAATAATCTTAT 59.552 37.037 0.00 0.00 43.79 1.73
7057 10678 6.769822 AGAGGACTTACCGTCGAATAATCTTA 59.230 38.462 0.00 0.00 43.79 2.10
7058 10679 5.593502 AGAGGACTTACCGTCGAATAATCTT 59.406 40.000 0.00 0.00 43.79 2.40
7059 10680 5.131784 AGAGGACTTACCGTCGAATAATCT 58.868 41.667 0.00 0.00 43.79 2.40
7060 10681 5.435820 AGAGGACTTACCGTCGAATAATC 57.564 43.478 0.00 0.00 43.79 1.75
7061 10682 5.472820 CCTAGAGGACTTACCGTCGAATAAT 59.527 44.000 0.00 0.00 43.79 1.28
7062 10683 4.818546 CCTAGAGGACTTACCGTCGAATAA 59.181 45.833 0.00 0.00 43.79 1.40
7063 10684 4.141620 ACCTAGAGGACTTACCGTCGAATA 60.142 45.833 1.60 0.00 43.79 1.75
7064 10685 3.212685 CCTAGAGGACTTACCGTCGAAT 58.787 50.000 0.00 0.00 43.79 3.34
7065 10686 2.026822 ACCTAGAGGACTTACCGTCGAA 60.027 50.000 1.60 0.00 43.79 3.71
7066 10687 1.556911 ACCTAGAGGACTTACCGTCGA 59.443 52.381 1.60 0.00 43.79 4.20
7067 10688 2.035530 ACCTAGAGGACTTACCGTCG 57.964 55.000 1.60 0.00 43.79 5.12
7068 10689 3.876320 CACTACCTAGAGGACTTACCGTC 59.124 52.174 1.60 0.00 44.74 4.79
7069 10690 3.371380 CCACTACCTAGAGGACTTACCGT 60.371 52.174 1.60 0.00 44.74 4.83
7070 10691 3.212685 CCACTACCTAGAGGACTTACCG 58.787 54.545 1.60 0.00 44.74 4.02
7071 10692 2.957680 GCCACTACCTAGAGGACTTACC 59.042 54.545 1.60 0.00 36.32 2.85
7072 10693 2.617774 CGCCACTACCTAGAGGACTTAC 59.382 54.545 1.60 0.00 36.32 2.34
7073 10694 2.422519 CCGCCACTACCTAGAGGACTTA 60.423 54.545 1.60 0.00 36.32 2.24
7074 10695 1.685491 CCGCCACTACCTAGAGGACTT 60.685 57.143 1.60 0.00 36.32 3.01
7075 10696 0.106619 CCGCCACTACCTAGAGGACT 60.107 60.000 1.60 0.00 36.32 3.85
7076 10697 0.106819 TCCGCCACTACCTAGAGGAC 60.107 60.000 1.60 0.00 36.32 3.85
7077 10698 0.106819 GTCCGCCACTACCTAGAGGA 60.107 60.000 1.60 0.00 36.32 3.71
7078 10699 1.108132 GGTCCGCCACTACCTAGAGG 61.108 65.000 0.00 0.00 37.16 3.69
7079 10700 1.108132 GGGTCCGCCACTACCTAGAG 61.108 65.000 0.00 0.00 35.97 2.43
7080 10701 1.076485 GGGTCCGCCACTACCTAGA 60.076 63.158 0.00 0.00 35.97 2.43
7081 10702 1.380785 TGGGTCCGCCACTACCTAG 60.381 63.158 0.00 0.00 35.97 3.02
7082 10703 1.380785 CTGGGTCCGCCACTACCTA 60.381 63.158 0.00 0.00 35.97 3.08
7083 10704 2.683933 CTGGGTCCGCCACTACCT 60.684 66.667 0.00 0.00 35.97 3.08
7084 10705 1.833787 TTTCTGGGTCCGCCACTACC 61.834 60.000 0.00 0.00 36.17 3.18
7085 10706 0.035739 TTTTCTGGGTCCGCCACTAC 59.964 55.000 0.00 0.00 36.17 2.73
7086 10707 0.766131 TTTTTCTGGGTCCGCCACTA 59.234 50.000 0.00 0.00 36.17 2.74
7087 10708 1.534697 TTTTTCTGGGTCCGCCACT 59.465 52.632 0.00 0.00 36.17 4.00
7088 10709 4.167597 TTTTTCTGGGTCCGCCAC 57.832 55.556 0.00 0.00 36.17 5.01
7104 10725 3.177997 GTGTGCACACCCTTCATTTTT 57.822 42.857 34.94 0.00 40.85 1.94
7105 10726 2.888834 GTGTGCACACCCTTCATTTT 57.111 45.000 34.94 0.00 40.85 1.82
7147 10768 9.797642 TCTTTTGCCATATATGATATGACACTT 57.202 29.630 14.54 0.00 0.00 3.16
7148 10769 9.797642 TTCTTTTGCCATATATGATATGACACT 57.202 29.630 14.54 0.00 0.00 3.55
7161 10782 7.761249 GCTCTTTGTGTTATTCTTTTGCCATAT 59.239 33.333 0.00 0.00 0.00 1.78
7162 10783 7.039784 AGCTCTTTGTGTTATTCTTTTGCCATA 60.040 33.333 0.00 0.00 0.00 2.74
7163 10784 5.928264 GCTCTTTGTGTTATTCTTTTGCCAT 59.072 36.000 0.00 0.00 0.00 4.40
7164 10785 5.068987 AGCTCTTTGTGTTATTCTTTTGCCA 59.931 36.000 0.00 0.00 0.00 4.92
7165 10786 5.532557 AGCTCTTTGTGTTATTCTTTTGCC 58.467 37.500 0.00 0.00 0.00 4.52
7166 10787 6.208644 TGAGCTCTTTGTGTTATTCTTTTGC 58.791 36.000 16.19 0.00 0.00 3.68
7167 10788 8.807667 ATTGAGCTCTTTGTGTTATTCTTTTG 57.192 30.769 16.19 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.