Multiple sequence alignment - TraesCS2A01G089100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G089100 chr2A 100.000 5050 0 0 1 5050 42318527 42323576 0.000000e+00 9326.0
1 TraesCS2A01G089100 chr2A 92.746 193 9 3 4713 4905 42322698 42322885 1.790000e-69 274.0
2 TraesCS2A01G089100 chr2A 92.746 193 9 3 4172 4359 42323239 42323431 1.790000e-69 274.0
3 TraesCS2A01G089100 chr2A 100.000 39 0 0 4720 4758 42323203 42323241 7.010000e-09 73.1
4 TraesCS2A01G089100 chr2A 100.000 39 0 0 4677 4715 42323246 42323284 7.010000e-09 73.1
5 TraesCS2A01G089100 chr2A 93.333 45 3 0 4671 4715 42322698 42322742 3.260000e-07 67.6
6 TraesCS2A01G089100 chr2A 93.333 45 3 0 4172 4216 42323197 42323241 3.260000e-07 67.6
7 TraesCS2A01G089100 chr2A 92.857 42 2 1 5008 5048 533887705 533887746 5.460000e-05 60.2
8 TraesCS2A01G089100 chr2D 89.353 2705 166 55 11 2678 37465067 37467686 0.000000e+00 3288.0
9 TraesCS2A01G089100 chr2D 91.962 1356 52 25 3410 4715 37468200 37469548 0.000000e+00 1847.0
10 TraesCS2A01G089100 chr2D 90.690 290 20 7 2720 3005 37467684 37467970 3.690000e-101 379.0
11 TraesCS2A01G089100 chr2D 98.204 167 3 0 4715 4881 37469505 37469671 4.950000e-75 292.0
12 TraesCS2A01G089100 chr2D 93.293 164 10 1 4176 4338 37469508 37469671 1.820000e-59 241.0
13 TraesCS2A01G089100 chr2D 89.286 196 13 4 4713 4905 37468993 37469183 6.530000e-59 239.0
14 TraesCS2A01G089100 chr2D 87.940 199 17 5 4470 4666 1636252 1636445 1.410000e-55 228.0
15 TraesCS2A01G089100 chr2D 94.964 139 7 0 4884 5022 37469764 37469902 8.510000e-53 219.0
16 TraesCS2A01G089100 chr2D 87.113 194 10 9 3160 3340 37467999 37468190 6.630000e-49 206.0
17 TraesCS2A01G089100 chr2D 88.000 175 16 4 4466 4638 43655972 43655801 8.570000e-48 202.0
18 TraesCS2A01G089100 chr2D 85.714 112 16 0 4363 4474 477988920 477988809 8.880000e-23 119.0
19 TraesCS2A01G089100 chr2D 88.235 51 4 2 4999 5049 1955115 1955067 5.460000e-05 60.2
20 TraesCS2A01G089100 chr2B 86.760 2349 199 47 29 2337 65226811 65229087 0.000000e+00 2512.0
21 TraesCS2A01G089100 chr2B 93.045 532 26 5 3945 4468 65230098 65230626 0.000000e+00 767.0
22 TraesCS2A01G089100 chr2B 92.766 235 17 0 2408 2642 65229105 65229339 1.740000e-89 340.0
23 TraesCS2A01G089100 chr2B 83.849 291 37 8 2717 3002 65229363 65229648 8.330000e-68 268.0
24 TraesCS2A01G089100 chr2B 82.154 325 19 17 3415 3725 65229781 65230080 5.050000e-60 243.0
25 TraesCS2A01G089100 chr2B 80.000 100 16 4 4362 4459 12937167 12937264 2.520000e-08 71.3
26 TraesCS2A01G089100 chr2B 87.931 58 5 2 3032 3088 644157488 644157544 3.260000e-07 67.6
27 TraesCS2A01G089100 chr2B 100.000 33 0 0 5018 5050 719560293 719560261 1.520000e-05 62.1
28 TraesCS2A01G089100 chr6B 88.830 188 19 2 4470 4656 156660305 156660119 3.930000e-56 230.0
29 TraesCS2A01G089100 chr6B 96.875 64 2 0 3098 3161 216509778 216509841 1.920000e-19 108.0
30 TraesCS2A01G089100 chr6B 93.243 74 3 2 3098 3170 476123588 476123516 1.920000e-19 108.0
31 TraesCS2A01G089100 chr6B 83.824 68 6 4 4988 5050 56013591 56013658 5.460000e-05 60.2
32 TraesCS2A01G089100 chr5D 87.129 202 19 6 4470 4669 37120984 37120788 6.580000e-54 222.0
33 TraesCS2A01G089100 chr6D 87.245 196 20 5 4470 4664 21818100 21818291 8.510000e-53 219.0
34 TraesCS2A01G089100 chr6D 93.151 73 5 0 3098 3170 146072887 146072815 1.920000e-19 108.0
35 TraesCS2A01G089100 chr6A 86.813 182 22 2 4470 4650 1669767 1669587 8.570000e-48 202.0
36 TraesCS2A01G089100 chr1A 84.925 199 23 6 4470 4666 223820550 223820743 1.430000e-45 195.0
37 TraesCS2A01G089100 chr1B 83.663 202 28 5 4470 4669 661148677 661148479 8.630000e-43 185.0
38 TraesCS2A01G089100 chr1B 91.026 78 5 2 3098 3175 436383686 436383761 2.490000e-18 104.0
39 TraesCS2A01G089100 chr1B 93.182 44 1 1 4954 4997 409956140 409956181 4.220000e-06 63.9
40 TraesCS2A01G089100 chr7D 94.444 72 4 0 3098 3169 490322072 490322143 1.490000e-20 111.0
41 TraesCS2A01G089100 chr7D 94.521 73 3 1 3098 3170 519264610 519264539 1.490000e-20 111.0
42 TraesCS2A01G089100 chr7D 84.158 101 14 2 3098 3196 28621980 28621880 4.160000e-16 97.1
43 TraesCS2A01G089100 chr7D 78.571 140 12 13 3005 3134 520288306 520288175 5.420000e-10 76.8
44 TraesCS2A01G089100 chr7D 84.615 78 11 1 4927 5003 554849813 554849736 5.420000e-10 76.8
45 TraesCS2A01G089100 chr7D 92.500 40 1 2 3254 3293 576296177 576296214 7.060000e-04 56.5
46 TraesCS2A01G089100 chr3B 94.366 71 4 0 3098 3168 526495873 526495803 5.350000e-20 110.0
47 TraesCS2A01G089100 chr3B 91.071 56 4 1 3037 3091 242211929 242211874 1.950000e-09 75.0
48 TraesCS2A01G089100 chr3A 87.368 95 12 0 4364 4458 10411872 10411778 5.350000e-20 110.0
49 TraesCS2A01G089100 chr3A 82.407 108 19 0 4364 4471 101942424 101942531 1.500000e-15 95.3
50 TraesCS2A01G089100 chr3A 82.569 109 17 2 4364 4471 101943169 101943276 1.500000e-15 95.3
51 TraesCS2A01G089100 chr3A 89.583 48 5 0 4956 5003 510714440 510714393 1.520000e-05 62.1
52 TraesCS2A01G089100 chr3D 93.056 72 5 0 3098 3169 300775505 300775576 6.910000e-19 106.0
53 TraesCS2A01G089100 chr3D 88.333 60 4 3 3031 3088 411724327 411724385 9.070000e-08 69.4
54 TraesCS2A01G089100 chr4D 88.462 78 8 1 3049 3125 394487391 394487314 5.380000e-15 93.5
55 TraesCS2A01G089100 chr4D 95.745 47 1 1 3045 3090 492239316 492239270 1.950000e-09 75.0
56 TraesCS2A01G089100 chr7A 88.889 63 6 1 3030 3091 708359846 708359908 5.420000e-10 76.8
57 TraesCS2A01G089100 chr7A 91.111 45 2 2 3249 3293 667224766 667224808 5.460000e-05 60.2
58 TraesCS2A01G089100 chr7A 89.583 48 2 3 5005 5050 680825099 680825145 1.960000e-04 58.4
59 TraesCS2A01G089100 chr7A 90.000 40 4 0 4941 4980 690706670 690706631 9.000000e-03 52.8
60 TraesCS2A01G089100 chr4A 95.833 48 1 1 3045 3091 684920487 684920440 5.420000e-10 76.8
61 TraesCS2A01G089100 chr4A 86.154 65 8 1 4940 5003 623845339 623845275 9.070000e-08 69.4
62 TraesCS2A01G089100 chr5A 92.308 52 2 2 3041 3091 330196398 330196348 7.010000e-09 73.1
63 TraesCS2A01G089100 chr5A 90.698 43 2 2 5010 5050 552952874 552952916 7.060000e-04 56.5
64 TraesCS2A01G089100 chr5A 100.000 28 0 0 321 348 480288440 480288467 9.000000e-03 52.8
65 TraesCS2A01G089100 chr7B 97.297 37 0 1 5013 5048 531683727 531683763 1.520000e-05 62.1
66 TraesCS2A01G089100 chr7B 97.143 35 1 0 4378 4412 679689102 679689136 5.460000e-05 60.2
67 TraesCS2A01G089100 chrUn 94.595 37 2 0 5012 5048 224991797 224991833 1.960000e-04 58.4
68 TraesCS2A01G089100 chr4B 90.909 44 2 2 5009 5050 106643697 106643654 1.960000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G089100 chr2A 42318527 42323576 5049 False 1450.771429 9326 96.022571 1 5050 7 chr2A.!!$F2 5049
1 TraesCS2A01G089100 chr2D 37465067 37469902 4835 False 838.875000 3288 91.858125 11 5022 8 chr2D.!!$F2 5011
2 TraesCS2A01G089100 chr2B 65226811 65230626 3815 False 826.000000 2512 87.714800 29 4468 5 chr2B.!!$F3 4439

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 1.153745 GAGCGCTCACCATTCGAGT 60.154 57.895 31.91 0.0 32.83 4.18 F
1272 1325 0.669318 CCGTTGAGAAGCAGCCGTTA 60.669 55.000 0.00 0.0 0.00 3.18 F
3060 3131 0.106819 TACCTGCTACTCCCTCCGTC 60.107 60.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 1945 0.312102 GTTCAGGCTGTTGAGTTGCC 59.688 55.000 15.27 0.0 46.42 4.52 R
3089 3160 0.036765 AAACGCTCTTATGGGACGCA 60.037 50.000 0.00 0.0 0.00 5.24 R
4401 4525 1.064314 TGCATAGGCCGGGTGTAATTT 60.064 47.619 2.18 0.0 40.13 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.153745 GAGCGCTCACCATTCGAGT 60.154 57.895 31.91 0.00 32.83 4.18
79 80 7.268586 AGTAATCTAAGTCGCTCAATGACATT 58.731 34.615 0.00 0.00 38.83 2.71
86 87 5.046529 AGTCGCTCAATGACATTATCTGAC 58.953 41.667 0.00 7.37 38.83 3.51
87 88 4.805719 GTCGCTCAATGACATTATCTGACA 59.194 41.667 0.00 0.00 36.37 3.58
91 92 5.814188 GCTCAATGACATTATCTGACAGACA 59.186 40.000 7.47 0.15 33.11 3.41
147 150 2.865551 AGAACAATGTTTGCCGCAAAAG 59.134 40.909 19.87 12.36 35.03 2.27
151 156 3.686726 ACAATGTTTGCCGCAAAAGAAAA 59.313 34.783 19.87 4.78 35.03 2.29
155 160 2.015736 TTGCCGCAAAAGAAAAGCAA 57.984 40.000 2.50 0.00 37.85 3.91
176 181 8.565896 AGCAAACAATAATGTGACTTCTATCA 57.434 30.769 0.00 0.00 40.46 2.15
191 202 6.934048 CTTCTATCAAATTGGAGAAGTCCC 57.066 41.667 20.61 0.00 43.15 4.46
246 258 5.337330 CCGTTCCTACTAAAGAACCACAGAT 60.337 44.000 0.00 0.00 39.36 2.90
248 260 6.750963 CGTTCCTACTAAAGAACCACAGATAC 59.249 42.308 0.00 0.00 39.36 2.24
274 286 4.633126 CACGTTGATCCACATCTCTTTGAT 59.367 41.667 0.00 0.00 35.40 2.57
275 287 5.812127 CACGTTGATCCACATCTCTTTGATA 59.188 40.000 0.00 0.00 33.36 2.15
276 288 5.812642 ACGTTGATCCACATCTCTTTGATAC 59.187 40.000 0.00 0.00 33.36 2.24
409 421 1.392589 CCCACCCGATTCAAATCTGG 58.607 55.000 10.58 10.58 43.15 3.86
474 486 2.219875 ACACTCCTGTCAGCCCCAG 61.220 63.158 0.00 0.00 0.00 4.45
614 641 2.202570 CGACGACCGGGTAAGCAG 60.203 66.667 6.32 0.00 33.91 4.24
616 643 4.430765 ACGACCGGGTAAGCAGCG 62.431 66.667 6.32 0.14 0.00 5.18
634 661 4.543084 GCGGCAGCGCATTCCTTC 62.543 66.667 11.47 0.00 34.62 3.46
666 694 3.508840 GCATCTGGGCCGTTTCCG 61.509 66.667 0.00 0.00 0.00 4.30
683 711 1.635663 CCGGGTGTCTGATTTCGTGC 61.636 60.000 0.00 0.00 0.00 5.34
772 801 3.391382 CCTTCGGCCGGTTCCTCT 61.391 66.667 27.83 0.00 0.00 3.69
894 923 1.204941 GCCTTCTTCGAGGAGCACTAA 59.795 52.381 4.21 0.00 39.25 2.24
924 953 2.202623 AAGAGCGCCGATGTCGAC 60.203 61.111 9.11 9.11 43.02 4.20
938 967 3.518998 CGACGAGGGCGAGGATGT 61.519 66.667 0.00 0.00 41.64 3.06
1083 1130 4.166011 GCCGTTGTCGATGCTGCC 62.166 66.667 0.00 0.00 39.71 4.85
1140 1193 1.154016 AGACGGCGTTGTCTCATCG 60.154 57.895 16.19 0.00 45.97 3.84
1147 1200 2.434185 TTGTCTCATCGTGCCGCC 60.434 61.111 0.00 0.00 0.00 6.13
1161 1214 4.227134 CGCCTGGATAGCACGGCT 62.227 66.667 0.00 3.87 43.41 5.52
1162 1215 2.590007 GCCTGGATAGCACGGCTG 60.590 66.667 0.00 0.00 40.10 4.85
1163 1216 3.094062 GCCTGGATAGCACGGCTGA 62.094 63.158 0.00 0.00 40.10 4.26
1164 1217 1.068753 CCTGGATAGCACGGCTGAG 59.931 63.158 0.00 0.00 40.10 3.35
1165 1218 1.593750 CTGGATAGCACGGCTGAGC 60.594 63.158 6.88 6.88 40.10 4.26
1166 1219 2.659897 GGATAGCACGGCTGAGCG 60.660 66.667 9.40 0.00 40.10 5.03
1167 1220 2.659897 GATAGCACGGCTGAGCGG 60.660 66.667 10.64 10.64 40.10 5.52
1168 1221 3.432051 GATAGCACGGCTGAGCGGT 62.432 63.158 12.11 12.11 42.59 5.68
1169 1222 3.432051 ATAGCACGGCTGAGCGGTC 62.432 63.158 15.02 7.89 39.98 4.79
1178 1231 3.274455 CTGAGCGGTCACACGAGCT 62.274 63.158 14.39 0.00 43.33 4.09
1209 1262 1.603802 CAGGTTGCTGAAGCGAGAAAA 59.396 47.619 0.00 0.00 45.83 2.29
1225 1278 0.971386 AAAAGGGCTGCAGTTGGATG 59.029 50.000 16.64 0.00 0.00 3.51
1229 1282 2.707849 GGCTGCAGTTGGATGCTGG 61.708 63.158 16.64 0.00 46.63 4.85
1237 1290 0.729116 GTTGGATGCTGGATGTGTCG 59.271 55.000 0.00 0.00 0.00 4.35
1272 1325 0.669318 CCGTTGAGAAGCAGCCGTTA 60.669 55.000 0.00 0.00 0.00 3.18
1374 1427 6.899393 TGTGAATTATTTGCAGGAGAGTTT 57.101 33.333 0.00 0.00 0.00 2.66
1400 1453 5.675684 TGTCAATCAAGGTGTAGCAGATA 57.324 39.130 0.00 0.00 0.00 1.98
1420 1473 1.271102 ACTGTCGAGAAGAAGAGGCAC 59.729 52.381 2.14 0.00 0.00 5.01
1423 1476 1.153745 CGAGAAGAAGAGGCACCCG 60.154 63.158 0.00 0.00 0.00 5.28
1429 1482 0.904865 AGAAGAGGCACCCGATGTCA 60.905 55.000 0.00 0.00 34.26 3.58
1482 1535 1.005924 TCCCCCATCAGGAAAGAAAGC 59.994 52.381 0.00 0.00 38.24 3.51
1513 1566 3.733960 GCCAAAAGGCGGTCGACC 61.734 66.667 25.28 25.28 0.00 4.79
1550 1603 3.055094 GGAGAACAGCTCACCATTTCCTA 60.055 47.826 0.00 0.00 45.81 2.94
1551 1604 4.187694 GAGAACAGCTCACCATTTCCTAG 58.812 47.826 0.00 0.00 43.38 3.02
1643 1696 4.832823 TCAGGAGATGTGAAATAGGCGATA 59.167 41.667 0.00 0.00 0.00 2.92
1684 1737 2.293122 TCTTGGTTCCACAATTGCTTCG 59.707 45.455 5.05 0.00 0.00 3.79
1711 1764 1.004080 TCAGCTGGAGTCTGCAAGC 60.004 57.895 15.13 1.91 39.84 4.01
1727 1780 0.962356 AAGCAGGCCGGTGAAAGATG 60.962 55.000 1.90 0.00 0.00 2.90
1831 1884 5.230942 AGTTTAACAGTTCCGAGTCTCATG 58.769 41.667 0.00 0.00 0.00 3.07
1850 1903 6.149973 TCTCATGAATAAGTTGGTTTGCTCTG 59.850 38.462 0.00 0.00 0.00 3.35
1891 1944 1.831580 ATTCCAGAAGCAGCTTCCAC 58.168 50.000 28.34 7.83 40.98 4.02
1892 1945 0.603707 TTCCAGAAGCAGCTTCCACG 60.604 55.000 28.34 17.99 40.98 4.94
1893 1946 2.037136 CCAGAAGCAGCTTCCACGG 61.037 63.158 28.34 22.26 40.98 4.94
1942 1995 5.684704 TCACTCAGAATCCAAAAAGTCAGT 58.315 37.500 0.00 0.00 0.00 3.41
1943 1996 5.528690 TCACTCAGAATCCAAAAAGTCAGTG 59.471 40.000 0.00 0.00 0.00 3.66
1946 1999 6.483640 ACTCAGAATCCAAAAAGTCAGTGTAC 59.516 38.462 0.00 0.00 0.00 2.90
1959 2012 7.765695 AAGTCAGTGTACCAATTGATTGATT 57.234 32.000 7.12 0.00 40.14 2.57
1966 2019 9.028284 AGTGTACCAATTGATTGATTTCAGATT 57.972 29.630 7.12 0.00 40.14 2.40
1999 2053 8.829373 AGCATTTAACCTTTCTAAGATGGAAT 57.171 30.769 0.00 0.00 0.00 3.01
2058 2112 5.803967 GCTTTTTGCTCTGATGTTCTAATGG 59.196 40.000 0.00 0.00 38.95 3.16
2059 2113 6.571150 GCTTTTTGCTCTGATGTTCTAATGGT 60.571 38.462 0.00 0.00 38.95 3.55
2061 2115 6.899393 TTTGCTCTGATGTTCTAATGGTTT 57.101 33.333 0.00 0.00 0.00 3.27
2062 2116 5.885230 TGCTCTGATGTTCTAATGGTTTG 57.115 39.130 0.00 0.00 0.00 2.93
2063 2117 4.156556 TGCTCTGATGTTCTAATGGTTTGC 59.843 41.667 0.00 0.00 0.00 3.68
2064 2118 4.439289 GCTCTGATGTTCTAATGGTTTGCC 60.439 45.833 0.00 0.00 0.00 4.52
2080 2135 5.243730 TGGTTTGCCCTTATTCTTTCTGAAG 59.756 40.000 0.00 0.00 38.18 3.02
2093 2148 7.391148 TTCTTTCTGAAGTATGGTAAATGCC 57.609 36.000 0.00 0.00 34.41 4.40
2103 2158 9.248291 GAAGTATGGTAAATGCCATTAAACATG 57.752 33.333 8.36 0.00 46.33 3.21
2107 2162 7.897575 TGGTAAATGCCATTAAACATGAAAC 57.102 32.000 0.00 0.00 32.81 2.78
2119 2174 7.959658 TTAAACATGAAACCCATCATCTGAT 57.040 32.000 0.00 0.00 37.96 2.90
2120 2175 6.461110 AAACATGAAACCCATCATCTGATC 57.539 37.500 0.00 0.00 37.96 2.92
2121 2176 5.384145 ACATGAAACCCATCATCTGATCT 57.616 39.130 0.00 0.00 37.96 2.75
2123 2178 5.593095 ACATGAAACCCATCATCTGATCTTG 59.407 40.000 0.00 0.00 37.96 3.02
2125 2180 3.657398 AACCCATCATCTGATCTTGCA 57.343 42.857 0.00 0.00 31.21 4.08
2126 2181 3.878237 ACCCATCATCTGATCTTGCAT 57.122 42.857 0.00 0.00 31.21 3.96
2127 2182 3.752665 ACCCATCATCTGATCTTGCATC 58.247 45.455 0.00 0.00 31.21 3.91
2256 2319 3.624861 AGCAATAAAGCCTGAATGAGACG 59.375 43.478 0.00 0.00 34.23 4.18
2269 2332 0.884259 TGAGACGGTGGCACATGTTG 60.884 55.000 20.82 5.78 44.52 3.33
2289 2352 8.664798 CATGTTGTTTCGAGTTATCCTCATTTA 58.335 33.333 0.00 0.00 40.48 1.40
2324 2387 7.114754 TCTTTCAAGGAGCATCACAATAAGAT 58.885 34.615 0.00 0.00 36.25 2.40
2357 2422 8.706322 ATGATAAATTCTAAAGGCCGGTAATT 57.294 30.769 1.90 0.00 0.00 1.40
2445 2513 9.157104 GTATTTGTTTCCAAAAGAAGACCAAAA 57.843 29.630 0.00 0.00 43.43 2.44
2446 2514 8.628630 ATTTGTTTCCAAAAGAAGACCAAAAA 57.371 26.923 0.00 0.00 43.43 1.94
2447 2515 7.665561 TTGTTTCCAAAAGAAGACCAAAAAG 57.334 32.000 0.00 0.00 35.40 2.27
2533 2601 8.335532 ACGATGAACCTGAATTGAAAGAAATA 57.664 30.769 0.00 0.00 0.00 1.40
2545 2613 6.408858 TTGAAAGAAATACATCAGAGCGTC 57.591 37.500 0.00 0.00 0.00 5.19
2578 2646 4.306600 CCAGGTCACTGCCAAATTTTTAC 58.693 43.478 0.00 0.00 43.53 2.01
2627 2695 5.647658 TCAAGGCAGGTATAAATTGTGTCTG 59.352 40.000 0.00 0.00 0.00 3.51
2634 2702 7.698130 GCAGGTATAAATTGTGTCTGATTCAAC 59.302 37.037 0.00 0.00 0.00 3.18
2649 2717 8.642020 GTCTGATTCAACAAGCATTTATTTGAC 58.358 33.333 0.00 0.00 0.00 3.18
2659 2727 7.811236 ACAAGCATTTATTTGACTCATGTCTTG 59.189 33.333 0.00 0.00 43.29 3.02
2669 2737 6.596309 TGACTCATGTCTTGTTAGTCTCAT 57.404 37.500 9.17 0.00 43.29 2.90
2670 2738 6.997655 TGACTCATGTCTTGTTAGTCTCATT 58.002 36.000 9.17 0.00 43.29 2.57
2687 2755 8.783660 AGTCTCATTCTAGATACCATTGGTTA 57.216 34.615 14.78 0.00 37.09 2.85
2688 2756 9.386122 AGTCTCATTCTAGATACCATTGGTTAT 57.614 33.333 14.78 5.64 37.09 1.89
2695 2763 8.262601 TCTAGATACCATTGGTTATGTGATGT 57.737 34.615 14.78 1.36 37.09 3.06
2817 2888 1.337823 GGTTAGCAGCTCAGTTCGGAA 60.338 52.381 0.00 0.00 0.00 4.30
2866 2937 4.995487 GGAACTTCGTCAAGTCTGGTTAAT 59.005 41.667 0.00 0.00 42.45 1.40
2949 3020 6.056884 TCAAAAAGTACGTACCAGGTTGATT 58.943 36.000 21.80 4.51 0.00 2.57
2961 3032 4.959839 ACCAGGTTGATTAACTTTGTGGTT 59.040 37.500 0.00 0.00 35.26 3.67
2975 3046 5.476945 ACTTTGTGGTTGGTGGATAAGAATC 59.523 40.000 0.00 0.00 0.00 2.52
3007 3078 5.690865 TGTCCAAAGGAAAGAGAGCTAAAA 58.309 37.500 0.00 0.00 31.38 1.52
3030 3101 7.524717 AAAAACACTAGTATTTGGCATGTCT 57.475 32.000 0.00 0.00 0.00 3.41
3032 3103 7.524717 AAACACTAGTATTTGGCATGTCTTT 57.475 32.000 0.00 0.00 0.00 2.52
3033 3104 7.524717 AACACTAGTATTTGGCATGTCTTTT 57.475 32.000 0.00 0.00 0.00 2.27
3034 3105 7.524717 ACACTAGTATTTGGCATGTCTTTTT 57.475 32.000 0.00 0.00 0.00 1.94
3035 3106 8.630054 ACACTAGTATTTGGCATGTCTTTTTA 57.370 30.769 0.00 0.00 0.00 1.52
3036 3107 9.243105 ACACTAGTATTTGGCATGTCTTTTTAT 57.757 29.630 0.00 0.00 0.00 1.40
3045 3116 9.474313 TTTGGCATGTCTTTTTATTAGATACCT 57.526 29.630 0.00 0.00 0.00 3.08
3046 3117 8.450578 TGGCATGTCTTTTTATTAGATACCTG 57.549 34.615 0.00 0.00 0.00 4.00
3047 3118 7.013274 TGGCATGTCTTTTTATTAGATACCTGC 59.987 37.037 0.00 0.00 0.00 4.85
3048 3119 7.229506 GGCATGTCTTTTTATTAGATACCTGCT 59.770 37.037 0.00 0.00 0.00 4.24
3049 3120 9.273016 GCATGTCTTTTTATTAGATACCTGCTA 57.727 33.333 0.00 0.00 0.00 3.49
3053 3124 9.478768 GTCTTTTTATTAGATACCTGCTACTCC 57.521 37.037 0.00 0.00 0.00 3.85
3054 3125 8.648693 TCTTTTTATTAGATACCTGCTACTCCC 58.351 37.037 0.00 0.00 0.00 4.30
3055 3126 8.562949 TTTTTATTAGATACCTGCTACTCCCT 57.437 34.615 0.00 0.00 0.00 4.20
3056 3127 7.778185 TTTATTAGATACCTGCTACTCCCTC 57.222 40.000 0.00 0.00 0.00 4.30
3057 3128 2.687003 AGATACCTGCTACTCCCTCC 57.313 55.000 0.00 0.00 0.00 4.30
3058 3129 1.202952 AGATACCTGCTACTCCCTCCG 60.203 57.143 0.00 0.00 0.00 4.63
3059 3130 0.556747 ATACCTGCTACTCCCTCCGT 59.443 55.000 0.00 0.00 0.00 4.69
3060 3131 0.106819 TACCTGCTACTCCCTCCGTC 60.107 60.000 0.00 0.00 0.00 4.79
3061 3132 2.128507 CCTGCTACTCCCTCCGTCC 61.129 68.421 0.00 0.00 0.00 4.79
3062 3133 2.043248 TGCTACTCCCTCCGTCCC 60.043 66.667 0.00 0.00 0.00 4.46
3063 3134 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
3064 3135 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
3065 3136 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
3066 3137 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
3067 3138 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
3068 3139 3.816842 GCTACTCCCTCCGTCCCATAATA 60.817 52.174 0.00 0.00 0.00 0.98
3069 3140 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3070 3141 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3071 3142 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3072 3143 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3073 3144 4.359105 TCCCTCCGTCCCATAATATAAGG 58.641 47.826 0.00 0.00 0.00 2.69
3074 3145 3.454812 CCCTCCGTCCCATAATATAAGGG 59.545 52.174 0.00 0.00 44.22 3.95
3075 3146 3.118371 CCTCCGTCCCATAATATAAGGGC 60.118 52.174 0.00 0.00 42.52 5.19
3076 3147 2.498481 TCCGTCCCATAATATAAGGGCG 59.502 50.000 8.12 8.12 42.52 6.13
3077 3148 2.235402 CCGTCCCATAATATAAGGGCGT 59.765 50.000 12.50 0.00 42.52 5.68
3078 3149 3.307199 CCGTCCCATAATATAAGGGCGTT 60.307 47.826 12.50 0.00 42.52 4.84
3079 3150 4.320870 CGTCCCATAATATAAGGGCGTTT 58.679 43.478 7.18 0.00 42.52 3.60
3080 3151 4.758165 CGTCCCATAATATAAGGGCGTTTT 59.242 41.667 7.18 0.00 42.52 2.43
3081 3152 5.239963 CGTCCCATAATATAAGGGCGTTTTT 59.760 40.000 7.18 0.00 42.52 1.94
3082 3153 6.427547 CGTCCCATAATATAAGGGCGTTTTTA 59.572 38.462 7.18 0.00 42.52 1.52
3083 3154 7.571798 CGTCCCATAATATAAGGGCGTTTTTAC 60.572 40.741 7.18 0.00 42.52 2.01
3084 3155 7.229106 GTCCCATAATATAAGGGCGTTTTTACA 59.771 37.037 0.00 0.00 42.52 2.41
3085 3156 7.229106 TCCCATAATATAAGGGCGTTTTTACAC 59.771 37.037 0.00 0.00 42.52 2.90
3086 3157 7.229907 CCCATAATATAAGGGCGTTTTTACACT 59.770 37.037 0.00 0.00 35.44 3.55
3087 3158 9.275398 CCATAATATAAGGGCGTTTTTACACTA 57.725 33.333 0.00 0.00 0.00 2.74
3090 3161 7.781548 ATATAAGGGCGTTTTTACACTAGTG 57.218 36.000 21.44 21.44 0.00 2.74
3091 3162 2.148768 AGGGCGTTTTTACACTAGTGC 58.851 47.619 22.90 5.90 0.00 4.40
3092 3163 1.136169 GGGCGTTTTTACACTAGTGCG 60.136 52.381 22.90 16.85 0.00 5.34
3093 3164 1.528161 GGCGTTTTTACACTAGTGCGT 59.472 47.619 22.90 7.01 0.00 5.24
3094 3165 2.410646 GGCGTTTTTACACTAGTGCGTC 60.411 50.000 22.90 14.22 0.00 5.19
3095 3166 2.410646 GCGTTTTTACACTAGTGCGTCC 60.411 50.000 22.90 5.42 0.00 4.79
3096 3167 2.156310 CGTTTTTACACTAGTGCGTCCC 59.844 50.000 22.90 5.95 0.00 4.46
3097 3168 3.132925 GTTTTTACACTAGTGCGTCCCA 58.867 45.455 22.90 0.00 0.00 4.37
3098 3169 3.688694 TTTTACACTAGTGCGTCCCAT 57.311 42.857 22.90 3.96 0.00 4.00
3099 3170 4.804868 TTTTACACTAGTGCGTCCCATA 57.195 40.909 22.90 2.93 0.00 2.74
3100 3171 4.804868 TTTACACTAGTGCGTCCCATAA 57.195 40.909 22.90 9.02 0.00 1.90
3101 3172 2.961526 ACACTAGTGCGTCCCATAAG 57.038 50.000 22.90 0.00 0.00 1.73
3102 3173 2.453521 ACACTAGTGCGTCCCATAAGA 58.546 47.619 22.90 0.00 0.00 2.10
3103 3174 2.427453 ACACTAGTGCGTCCCATAAGAG 59.573 50.000 22.90 0.00 0.00 2.85
3104 3175 1.409427 ACTAGTGCGTCCCATAAGAGC 59.591 52.381 0.00 0.00 0.00 4.09
3105 3176 0.384309 TAGTGCGTCCCATAAGAGCG 59.616 55.000 0.00 0.00 0.00 5.03
3106 3177 1.153628 GTGCGTCCCATAAGAGCGT 60.154 57.895 0.00 0.00 0.00 5.07
3107 3178 0.739813 GTGCGTCCCATAAGAGCGTT 60.740 55.000 0.00 0.00 0.00 4.84
3108 3179 0.036765 TGCGTCCCATAAGAGCGTTT 60.037 50.000 0.00 0.00 0.00 3.60
3109 3180 1.084289 GCGTCCCATAAGAGCGTTTT 58.916 50.000 0.00 0.00 0.00 2.43
3110 3181 1.467342 GCGTCCCATAAGAGCGTTTTT 59.533 47.619 0.00 0.00 0.00 1.94
3111 3182 2.727916 GCGTCCCATAAGAGCGTTTTTG 60.728 50.000 0.00 0.00 0.00 2.44
3112 3183 2.739913 CGTCCCATAAGAGCGTTTTTGA 59.260 45.455 0.00 0.00 0.00 2.69
3113 3184 3.424433 CGTCCCATAAGAGCGTTTTTGAC 60.424 47.826 0.00 0.00 0.00 3.18
3114 3185 3.500680 GTCCCATAAGAGCGTTTTTGACA 59.499 43.478 0.00 0.00 0.00 3.58
3115 3186 3.500680 TCCCATAAGAGCGTTTTTGACAC 59.499 43.478 0.00 0.00 0.00 3.67
3116 3187 3.502211 CCCATAAGAGCGTTTTTGACACT 59.498 43.478 0.00 0.00 0.00 3.55
3117 3188 4.693566 CCCATAAGAGCGTTTTTGACACTA 59.306 41.667 0.00 0.00 0.00 2.74
3118 3189 5.390567 CCCATAAGAGCGTTTTTGACACTAC 60.391 44.000 0.00 0.00 0.00 2.73
3119 3190 5.178623 CCATAAGAGCGTTTTTGACACTACA 59.821 40.000 0.00 0.00 0.00 2.74
3120 3191 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
3121 3192 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
3122 3193 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
3123 3194 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
3124 3195 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
3138 3209 6.746120 ACTACACTAGTGTCAAAAACGATCT 58.254 36.000 31.11 5.44 43.74 2.75
3139 3210 7.208080 ACTACACTAGTGTCAAAAACGATCTT 58.792 34.615 31.11 4.99 43.74 2.40
3140 3211 8.355169 ACTACACTAGTGTCAAAAACGATCTTA 58.645 33.333 31.11 8.36 43.74 2.10
3141 3212 9.355215 CTACACTAGTGTCAAAAACGATCTTAT 57.645 33.333 31.11 3.94 43.74 1.73
3143 3214 9.871238 ACACTAGTGTCAAAAACGATCTTATAT 57.129 29.630 22.95 0.00 40.24 0.86
3149 3220 9.878599 GTGTCAAAAACGATCTTATATTATGGG 57.121 33.333 0.00 0.00 0.00 4.00
3150 3221 9.839817 TGTCAAAAACGATCTTATATTATGGGA 57.160 29.630 0.00 0.00 0.00 4.37
3152 3223 8.984764 TCAAAAACGATCTTATATTATGGGACG 58.015 33.333 0.00 0.00 0.00 4.79
3153 3224 7.900782 AAAACGATCTTATATTATGGGACGG 57.099 36.000 0.00 0.00 0.00 4.79
3154 3225 6.845758 AACGATCTTATATTATGGGACGGA 57.154 37.500 0.00 0.00 0.00 4.69
3155 3226 6.845758 ACGATCTTATATTATGGGACGGAA 57.154 37.500 0.00 0.00 0.00 4.30
3156 3227 6.864342 ACGATCTTATATTATGGGACGGAAG 58.136 40.000 0.00 0.00 0.00 3.46
3157 3228 6.127423 ACGATCTTATATTATGGGACGGAAGG 60.127 42.308 0.00 0.00 0.00 3.46
3158 3229 6.096423 CGATCTTATATTATGGGACGGAAGGA 59.904 42.308 0.00 0.00 0.00 3.36
3175 3246 8.154649 ACGGAAGGAGTGCTATTTTATAAATG 57.845 34.615 0.00 0.00 0.00 2.32
3182 3253 8.807581 GGAGTGCTATTTTATAAATGTTGTTGC 58.192 33.333 0.00 0.00 0.00 4.17
3183 3254 9.573133 GAGTGCTATTTTATAAATGTTGTTGCT 57.427 29.630 0.00 0.00 0.00 3.91
3227 3299 5.411669 GTCTTTTGTAATGGTAGTCTGTGGG 59.588 44.000 0.00 0.00 0.00 4.61
3349 3433 1.152830 GGAACTTTGGCAGGGGTCA 59.847 57.895 8.61 0.00 0.00 4.02
3361 3445 0.849094 AGGGGTCATGGGTGGCTAAA 60.849 55.000 0.00 0.00 0.00 1.85
3366 3450 2.418609 GGTCATGGGTGGCTAAAAATGC 60.419 50.000 0.00 0.00 0.00 3.56
3368 3452 1.204467 CATGGGTGGCTAAAAATGCGT 59.796 47.619 0.00 0.00 0.00 5.24
3369 3453 0.885196 TGGGTGGCTAAAAATGCGTC 59.115 50.000 0.00 0.00 0.00 5.19
3370 3454 0.172578 GGGTGGCTAAAAATGCGTCC 59.827 55.000 0.00 0.00 0.00 4.79
3371 3455 0.885196 GGTGGCTAAAAATGCGTCCA 59.115 50.000 0.00 0.00 0.00 4.02
3372 3456 1.271102 GGTGGCTAAAAATGCGTCCAA 59.729 47.619 0.00 0.00 0.00 3.53
3373 3457 2.288518 GGTGGCTAAAAATGCGTCCAAA 60.289 45.455 0.00 0.00 0.00 3.28
3374 3458 2.986479 GTGGCTAAAAATGCGTCCAAAG 59.014 45.455 0.00 0.00 0.00 2.77
3375 3459 2.029470 TGGCTAAAAATGCGTCCAAAGG 60.029 45.455 0.00 0.00 0.00 3.11
3376 3460 2.606108 GCTAAAAATGCGTCCAAAGGG 58.394 47.619 0.00 0.00 0.00 3.95
3377 3461 2.230266 GCTAAAAATGCGTCCAAAGGGA 59.770 45.455 0.00 0.00 42.29 4.20
3378 3462 3.673323 GCTAAAAATGCGTCCAAAGGGAG 60.673 47.826 0.00 0.00 46.12 4.30
3379 3463 1.995376 AAAATGCGTCCAAAGGGAGT 58.005 45.000 0.00 0.00 46.12 3.85
3380 3464 1.247567 AAATGCGTCCAAAGGGAGTG 58.752 50.000 0.00 0.00 46.12 3.51
3381 3465 0.609131 AATGCGTCCAAAGGGAGTGG 60.609 55.000 0.00 0.00 46.12 4.00
3382 3466 3.056328 GCGTCCAAAGGGAGTGGC 61.056 66.667 0.00 0.00 46.12 5.01
3383 3467 2.742372 CGTCCAAAGGGAGTGGCG 60.742 66.667 0.00 0.00 46.12 5.69
3384 3468 2.430367 GTCCAAAGGGAGTGGCGT 59.570 61.111 0.00 0.00 46.12 5.68
3385 3469 1.228154 GTCCAAAGGGAGTGGCGTT 60.228 57.895 0.00 0.00 46.12 4.84
3386 3470 1.072505 TCCAAAGGGAGTGGCGTTC 59.927 57.895 0.00 0.00 38.64 3.95
3387 3471 1.073199 CCAAAGGGAGTGGCGTTCT 59.927 57.895 0.00 0.00 35.59 3.01
3388 3472 0.537371 CCAAAGGGAGTGGCGTTCTT 60.537 55.000 0.00 0.00 35.59 2.52
3389 3473 0.593128 CAAAGGGAGTGGCGTTCTTG 59.407 55.000 0.00 0.00 0.00 3.02
3390 3474 0.182775 AAAGGGAGTGGCGTTCTTGT 59.817 50.000 0.00 0.00 0.00 3.16
3391 3475 0.535102 AAGGGAGTGGCGTTCTTGTG 60.535 55.000 0.00 0.00 0.00 3.33
3392 3476 1.966451 GGGAGTGGCGTTCTTGTGG 60.966 63.158 0.00 0.00 0.00 4.17
3393 3477 1.070786 GGAGTGGCGTTCTTGTGGA 59.929 57.895 0.00 0.00 0.00 4.02
3394 3478 1.228657 GGAGTGGCGTTCTTGTGGAC 61.229 60.000 0.00 0.00 0.00 4.02
3395 3479 1.557443 GAGTGGCGTTCTTGTGGACG 61.557 60.000 0.00 0.00 0.00 4.79
3396 3480 1.885850 GTGGCGTTCTTGTGGACGT 60.886 57.895 0.00 0.00 0.00 4.34
3397 3481 1.593209 TGGCGTTCTTGTGGACGTC 60.593 57.895 7.13 7.13 0.00 4.34
3398 3482 1.593209 GGCGTTCTTGTGGACGTCA 60.593 57.895 18.91 0.27 0.00 4.35
3399 3483 1.557443 GGCGTTCTTGTGGACGTCAG 61.557 60.000 18.91 6.07 0.00 3.51
3400 3484 0.596600 GCGTTCTTGTGGACGTCAGA 60.597 55.000 18.91 8.60 0.00 3.27
3401 3485 1.129326 CGTTCTTGTGGACGTCAGAC 58.871 55.000 18.91 13.54 0.00 3.51
3402 3486 1.535226 CGTTCTTGTGGACGTCAGACA 60.535 52.381 18.91 16.05 0.00 3.41
3403 3487 2.755650 GTTCTTGTGGACGTCAGACAT 58.244 47.619 18.91 0.00 0.00 3.06
3404 3488 2.438868 TCTTGTGGACGTCAGACATG 57.561 50.000 18.91 18.96 0.00 3.21
3405 3489 1.960689 TCTTGTGGACGTCAGACATGA 59.039 47.619 21.66 21.66 0.00 3.07
3406 3490 2.562738 TCTTGTGGACGTCAGACATGAT 59.437 45.455 21.66 0.00 37.87 2.45
3407 3491 3.006859 TCTTGTGGACGTCAGACATGATT 59.993 43.478 21.66 0.00 37.87 2.57
3408 3492 3.401033 TGTGGACGTCAGACATGATTT 57.599 42.857 18.91 0.00 37.87 2.17
3511 3605 3.279434 GGTTCTTGCTGGTAACTATGGG 58.721 50.000 0.00 0.00 37.61 4.00
3527 3621 0.039472 TGGGTGAACATGGTCCATGG 59.961 55.000 30.96 15.97 45.16 3.66
3531 3625 2.086869 GTGAACATGGTCCATGGACAG 58.913 52.381 38.83 29.97 45.16 3.51
3630 3741 0.980423 AGAGTTCAAGTCTCTGGGCC 59.020 55.000 0.00 0.00 40.26 5.80
3721 3836 1.878953 AAGTACTGGTTGGTTCAGCG 58.121 50.000 0.00 0.00 35.78 5.18
3748 3863 5.826643 TGGGTGAGAGCCTTTATAAACAAT 58.173 37.500 0.00 0.00 36.53 2.71
3749 3864 5.652014 TGGGTGAGAGCCTTTATAAACAATG 59.348 40.000 0.00 0.00 36.53 2.82
3761 3876 9.342308 CCTTTATAAACAATGGCTAGATGAGAA 57.658 33.333 0.00 0.00 0.00 2.87
3771 3886 3.751698 GGCTAGATGAGAAAAACAACGGT 59.248 43.478 0.00 0.00 0.00 4.83
3772 3887 4.378459 GGCTAGATGAGAAAAACAACGGTG 60.378 45.833 0.00 0.00 0.00 4.94
3806 3921 1.165270 CCAGAATCACCGTTTGTCCC 58.835 55.000 0.00 0.00 0.00 4.46
3808 3923 2.226330 CAGAATCACCGTTTGTCCCAA 58.774 47.619 0.00 0.00 0.00 4.12
3831 3946 4.034048 ACAAAACTAGCAAGACTGTTGACG 59.966 41.667 0.00 0.00 0.00 4.35
3862 3977 1.605968 GCAATGGTGATGCAGCAACAA 60.606 47.619 28.43 10.79 44.96 2.83
3865 3980 1.100463 TGGTGATGCAGCAACAACGT 61.100 50.000 22.44 0.00 38.96 3.99
3952 4067 9.937175 GTATGATGTAAAATTTTCTAGCCTGTC 57.063 33.333 6.72 0.00 0.00 3.51
3955 4070 6.817765 TGTAAAATTTTCTAGCCTGTCCTG 57.182 37.500 6.72 0.00 0.00 3.86
4392 4516 9.844790 TCGACAAACGGAATATATTAATATCGT 57.155 29.630 11.28 11.65 42.82 3.73
4417 4541 3.712733 AGATACAAATTACACCCGGCCTA 59.287 43.478 0.00 0.00 0.00 3.93
4459 4583 0.871722 GACATTACGGCTGCACACAA 59.128 50.000 0.50 0.00 0.00 3.33
4468 4592 1.268743 GGCTGCACACAACTGAAAGAC 60.269 52.381 0.50 0.00 37.43 3.01
4479 4603 9.173939 CACACAACTGAAAGACAATAATTCTTC 57.826 33.333 0.00 0.00 37.43 2.87
4602 4726 8.871742 TTTGTGAACAATTTTTCAAAATCACG 57.128 26.923 10.09 0.00 37.16 4.35
4623 4747 4.629634 ACGCGATGAGATGTGAACAAAATA 59.370 37.500 15.93 0.00 0.00 1.40
4670 4794 2.032987 TTTTTCCTCCCGTCGCCC 59.967 61.111 0.00 0.00 0.00 6.13
4671 4795 2.522367 TTTTTCCTCCCGTCGCCCT 61.522 57.895 0.00 0.00 0.00 5.19
4672 4796 2.059345 TTTTTCCTCCCGTCGCCCTT 62.059 55.000 0.00 0.00 0.00 3.95
4673 4797 2.059345 TTTTCCTCCCGTCGCCCTTT 62.059 55.000 0.00 0.00 0.00 3.11
4674 4798 2.059345 TTTCCTCCCGTCGCCCTTTT 62.059 55.000 0.00 0.00 0.00 2.27
4675 4799 2.741486 TTCCTCCCGTCGCCCTTTTG 62.741 60.000 0.00 0.00 0.00 2.44
4676 4800 3.431725 CTCCCGTCGCCCTTTTGC 61.432 66.667 0.00 0.00 0.00 3.68
4677 4801 4.257654 TCCCGTCGCCCTTTTGCA 62.258 61.111 0.00 0.00 0.00 4.08
4678 4802 3.061848 CCCGTCGCCCTTTTGCAT 61.062 61.111 0.00 0.00 0.00 3.96
4679 4803 2.635443 CCCGTCGCCCTTTTGCATT 61.635 57.895 0.00 0.00 0.00 3.56
4681 4805 0.523966 CCGTCGCCCTTTTGCATTTA 59.476 50.000 0.00 0.00 0.00 1.40
4682 4806 1.068194 CCGTCGCCCTTTTGCATTTAA 60.068 47.619 0.00 0.00 0.00 1.52
4685 4809 3.677596 CGTCGCCCTTTTGCATTTAATTT 59.322 39.130 0.00 0.00 0.00 1.82
4686 4810 4.434067 CGTCGCCCTTTTGCATTTAATTTG 60.434 41.667 0.00 0.00 0.00 2.32
4687 4811 4.688413 GTCGCCCTTTTGCATTTAATTTGA 59.312 37.500 0.00 0.00 0.00 2.69
4688 4812 5.351189 GTCGCCCTTTTGCATTTAATTTGAT 59.649 36.000 0.00 0.00 0.00 2.57
4689 4813 5.936956 TCGCCCTTTTGCATTTAATTTGATT 59.063 32.000 0.00 0.00 0.00 2.57
4690 4814 7.064016 GTCGCCCTTTTGCATTTAATTTGATTA 59.936 33.333 0.00 0.00 0.00 1.75
4691 4815 7.768120 TCGCCCTTTTGCATTTAATTTGATTAT 59.232 29.630 0.00 0.00 0.00 1.28
4692 4816 7.851963 CGCCCTTTTGCATTTAATTTGATTATG 59.148 33.333 0.00 0.00 0.00 1.90
4693 4817 8.676401 GCCCTTTTGCATTTAATTTGATTATGT 58.324 29.630 0.00 0.00 0.00 2.29
4716 4840 9.871238 ATGTTTGTGTAACTACCTATGACTTAG 57.129 33.333 0.00 0.00 38.04 2.18
4869 4993 4.039982 GCTTGAAAAATAAAGCACGTGC 57.960 40.909 32.79 32.79 46.45 5.34
4881 5005 1.068474 GCACGTGCGTTGAGAAGTAT 58.932 50.000 26.77 0.00 0.00 2.12
4885 5099 4.201685 GCACGTGCGTTGAGAAGTATTATT 60.202 41.667 26.77 0.00 0.00 1.40
4892 5106 6.982141 TGCGTTGAGAAGTATTATTATTCCGT 59.018 34.615 0.00 0.00 0.00 4.69
4923 5137 3.278574 TGGAGCAATTGTCTTATTCCGG 58.721 45.455 7.40 0.00 0.00 5.14
4924 5138 3.054728 TGGAGCAATTGTCTTATTCCGGA 60.055 43.478 0.00 0.00 0.00 5.14
5027 5241 2.942879 GCAATGTCGTGCGAACCA 59.057 55.556 0.00 0.00 34.21 3.67
5028 5242 1.281353 GCAATGTCGTGCGAACCAA 59.719 52.632 0.00 0.00 34.21 3.67
5029 5243 0.996727 GCAATGTCGTGCGAACCAAC 60.997 55.000 0.00 0.00 34.21 3.77
5030 5244 0.385473 CAATGTCGTGCGAACCAACC 60.385 55.000 0.00 0.00 0.00 3.77
5031 5245 0.534203 AATGTCGTGCGAACCAACCT 60.534 50.000 0.00 0.00 0.00 3.50
5032 5246 0.319083 ATGTCGTGCGAACCAACCTA 59.681 50.000 0.00 0.00 0.00 3.08
5033 5247 0.319083 TGTCGTGCGAACCAACCTAT 59.681 50.000 0.00 0.00 0.00 2.57
5034 5248 0.719465 GTCGTGCGAACCAACCTATG 59.281 55.000 0.00 0.00 0.00 2.23
5049 5263 5.373812 AACCTATGGTTGGATGGTTAGAG 57.626 43.478 0.71 0.00 45.07 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.511454 GGTGAGCGCTCATGATATTTAACA 59.489 41.667 39.91 12.92 42.18 2.41
27 28 4.702831 TGGTGAGCGCTCATGATATTTAA 58.297 39.130 39.91 13.03 42.18 1.52
42 43 5.593010 ACTTAGATTACTCGAATGGTGAGC 58.407 41.667 0.00 0.00 36.94 4.26
56 57 9.411801 GATAATGTCATTGAGCGACTTAGATTA 57.588 33.333 8.39 0.00 34.37 1.75
115 118 7.176285 GCAAACATTGTTCTTTGCTAATTGA 57.824 32.000 14.51 0.00 45.82 2.57
127 130 2.863137 TCTTTTGCGGCAAACATTGTTC 59.137 40.909 26.39 0.00 32.79 3.18
130 133 3.940657 TTTCTTTTGCGGCAAACATTG 57.059 38.095 26.39 16.38 32.79 2.82
147 150 8.579682 AGAAGTCACATTATTGTTTGCTTTTC 57.420 30.769 0.00 0.00 32.34 2.29
151 156 8.565896 TGATAGAAGTCACATTATTGTTTGCT 57.434 30.769 0.00 0.00 32.34 3.91
176 181 4.284178 CATCATGGGGACTTCTCCAATTT 58.716 43.478 0.83 0.00 38.52 1.82
179 184 1.565759 CCATCATGGGGACTTCTCCAA 59.434 52.381 0.83 0.00 38.52 3.53
181 186 1.216990 ACCATCATGGGGACTTCTCC 58.783 55.000 9.04 0.00 43.37 3.71
182 187 3.372440 AAACCATCATGGGGACTTCTC 57.628 47.619 9.04 0.00 43.37 2.87
183 188 3.564352 GGAAAACCATCATGGGGACTTCT 60.564 47.826 9.04 0.00 43.37 2.85
190 201 4.888326 TCTTTTGGAAAACCATCATGGG 57.112 40.909 9.04 0.00 43.37 4.00
191 202 6.935771 TGATTTCTTTTGGAAAACCATCATGG 59.064 34.615 0.54 0.54 45.56 3.66
214 225 5.258841 TCTTTAGTAGGAACGGATCACTGA 58.741 41.667 0.00 0.00 0.00 3.41
246 258 0.248012 ATGTGGATCAACGTGCCGTA 59.752 50.000 0.00 0.00 39.99 4.02
248 260 0.740868 AGATGTGGATCAACGTGCCG 60.741 55.000 0.00 0.00 0.00 5.69
274 286 1.153706 GCCGAGCTTGGCGTTAGTA 60.154 57.895 29.15 0.00 46.75 1.82
275 287 2.434359 GCCGAGCTTGGCGTTAGT 60.434 61.111 29.15 0.00 46.75 2.24
620 647 1.997928 GAAGGGAAGGAATGCGCTGC 61.998 60.000 9.73 0.00 0.00 5.25
621 648 1.709147 CGAAGGGAAGGAATGCGCTG 61.709 60.000 9.73 0.00 0.00 5.18
622 649 1.450312 CGAAGGGAAGGAATGCGCT 60.450 57.895 9.73 0.00 0.00 5.92
623 650 3.102097 CGAAGGGAAGGAATGCGC 58.898 61.111 0.00 0.00 0.00 6.09
666 694 1.523758 AAGCACGAAATCAGACACCC 58.476 50.000 0.00 0.00 0.00 4.61
690 718 3.321682 CCTGAGACCAATCAAGCCAAAAA 59.678 43.478 0.00 0.00 0.00 1.94
691 719 2.892852 CCTGAGACCAATCAAGCCAAAA 59.107 45.455 0.00 0.00 0.00 2.44
894 923 2.985456 CTCTTCCGCTTCCTGGCT 59.015 61.111 0.00 0.00 0.00 4.75
924 953 3.209812 TCGACATCCTCGCCCTCG 61.210 66.667 0.00 0.00 42.62 4.63
927 956 3.471244 CTCGTCGACATCCTCGCCC 62.471 68.421 17.16 0.00 42.62 6.13
928 957 2.024871 CTCGTCGACATCCTCGCC 59.975 66.667 17.16 0.00 42.62 5.54
929 958 2.024871 CCTCGTCGACATCCTCGC 59.975 66.667 17.16 0.00 42.62 5.03
1116 1169 2.512745 ACAACGCCGTCTGCAACA 60.513 55.556 0.00 0.00 41.33 3.33
1140 1193 2.897350 GTGCTATCCAGGCGGCAC 60.897 66.667 13.08 13.00 45.93 5.01
1147 1200 1.593750 GCTCAGCCGTGCTATCCAG 60.594 63.158 0.00 0.00 36.40 3.86
1160 1213 2.807045 GCTCGTGTGACCGCTCAG 60.807 66.667 0.00 0.00 0.00 3.35
1161 1214 3.295273 AGCTCGTGTGACCGCTCA 61.295 61.111 0.00 0.00 0.00 4.26
1162 1215 2.807045 CAGCTCGTGTGACCGCTC 60.807 66.667 0.00 0.00 0.00 5.03
1178 1231 2.906939 GCAACCTGCACATCACGCA 61.907 57.895 0.00 0.00 44.26 5.24
1209 1262 2.362120 GCATCCAACTGCAGCCCT 60.362 61.111 15.27 0.00 41.87 5.19
1225 1278 2.046892 AGCCACGACACATCCAGC 60.047 61.111 0.00 0.00 0.00 4.85
1229 1282 1.230635 AACAGCAGCCACGACACATC 61.231 55.000 0.00 0.00 0.00 3.06
1237 1290 2.570181 GGCATCAACAGCAGCCAC 59.430 61.111 0.00 0.00 46.26 5.01
1272 1325 1.341531 CTCGTTTGAGAGGTCACCTGT 59.658 52.381 0.00 0.00 45.57 4.00
1374 1427 4.650734 TGCTACACCTTGATTGACAATCA 58.349 39.130 23.89 23.89 45.68 2.57
1387 1440 2.946329 CTCGACAGTATCTGCTACACCT 59.054 50.000 0.00 0.00 34.37 4.00
1400 1453 1.271102 GTGCCTCTTCTTCTCGACAGT 59.729 52.381 0.00 0.00 0.00 3.55
1423 1476 4.084118 GGCTTCTGAAATAGCGATGACATC 60.084 45.833 5.28 5.28 38.28 3.06
1429 1482 2.216898 GCAGGCTTCTGAAATAGCGAT 58.783 47.619 0.00 0.00 40.86 4.58
1525 1578 2.777832 ATGGTGAGCTGTTCTCCTTC 57.222 50.000 12.71 0.00 41.18 3.46
1550 1603 5.531122 TCTTGCTTGTTACTGTCAGTACT 57.469 39.130 12.37 0.00 28.93 2.73
1551 1604 5.983720 TCTTCTTGCTTGTTACTGTCAGTAC 59.016 40.000 12.37 8.53 28.93 2.73
1612 1665 6.754702 ATTTCACATCTCCTGAAGTTCATG 57.245 37.500 5.91 3.74 0.00 3.07
1613 1666 7.052873 CCTATTTCACATCTCCTGAAGTTCAT 58.947 38.462 5.91 0.00 0.00 2.57
1643 1696 3.450457 AGATTTCTTGATCTCGAGGCAGT 59.550 43.478 13.56 0.00 30.67 4.40
1669 1722 2.559698 TCCTCGAAGCAATTGTGGAA 57.440 45.000 7.40 0.00 33.13 3.53
1684 1737 3.068024 CAGACTCCAGCTGACTAATCCTC 59.932 52.174 17.39 0.00 35.39 3.71
1711 1764 0.804989 GAACATCTTTCACCGGCCTG 59.195 55.000 0.00 0.00 0.00 4.85
1831 1884 6.503524 TGAAACAGAGCAAACCAACTTATTC 58.496 36.000 0.00 0.00 0.00 1.75
1850 1903 1.341209 CCTTTGCAGAACCCCTGAAAC 59.659 52.381 0.00 0.00 45.78 2.78
1892 1945 0.312102 GTTCAGGCTGTTGAGTTGCC 59.688 55.000 15.27 0.00 46.42 4.52
1893 1946 1.024271 TGTTCAGGCTGTTGAGTTGC 58.976 50.000 15.27 0.00 0.00 4.17
1959 2012 9.920946 AGGTTAAATGCTTTCCTATAATCTGAA 57.079 29.630 0.00 0.00 0.00 3.02
1975 2028 9.305925 CAATTCCATCTTAGAAAGGTTAAATGC 57.694 33.333 4.43 0.00 0.00 3.56
2058 2112 6.332735 ACTTCAGAAAGAATAAGGGCAAAC 57.667 37.500 0.00 0.00 35.25 2.93
2059 2113 7.122650 CCATACTTCAGAAAGAATAAGGGCAAA 59.877 37.037 0.00 0.00 35.25 3.68
2061 2115 6.122277 CCATACTTCAGAAAGAATAAGGGCA 58.878 40.000 0.00 0.00 35.25 5.36
2062 2116 6.122964 ACCATACTTCAGAAAGAATAAGGGC 58.877 40.000 0.00 0.00 35.25 5.19
2063 2117 9.681062 TTTACCATACTTCAGAAAGAATAAGGG 57.319 33.333 0.00 0.00 35.25 3.95
2093 2148 7.774134 TCAGATGATGGGTTTCATGTTTAATG 58.226 34.615 0.00 0.00 36.48 1.90
2103 2158 3.949754 TGCAAGATCAGATGATGGGTTTC 59.050 43.478 0.00 0.00 34.37 2.78
2107 2162 3.751518 TGATGCAAGATCAGATGATGGG 58.248 45.455 0.00 0.00 34.37 4.00
2119 2174 1.487976 GGAGACCTGGATGATGCAAGA 59.512 52.381 0.00 0.00 0.00 3.02
2120 2175 1.211212 TGGAGACCTGGATGATGCAAG 59.789 52.381 0.00 0.00 0.00 4.01
2121 2176 1.288188 TGGAGACCTGGATGATGCAA 58.712 50.000 0.00 0.00 0.00 4.08
2123 2178 3.008813 ACATATGGAGACCTGGATGATGC 59.991 47.826 7.80 0.00 0.00 3.91
2125 2180 4.496540 TGACATATGGAGACCTGGATGAT 58.503 43.478 7.80 0.00 0.00 2.45
2126 2181 3.899980 CTGACATATGGAGACCTGGATGA 59.100 47.826 7.80 0.00 0.00 2.92
2127 2182 3.645212 ACTGACATATGGAGACCTGGATG 59.355 47.826 7.80 0.00 0.00 3.51
2169 2232 2.416162 GGCGAAGTTGAACCAAACAACA 60.416 45.455 12.15 0.00 46.58 3.33
2199 2262 6.285990 TCTTTAGCTATATTGGTTTCCGGAC 58.714 40.000 1.83 0.00 0.00 4.79
2256 2319 0.665835 TCGAAACAACATGTGCCACC 59.334 50.000 0.00 0.00 0.00 4.61
2403 2468 9.383519 GAAACAAATACTGATTGGAGAGTGATA 57.616 33.333 0.00 0.00 32.02 2.15
2485 2553 2.504367 GCTTTTCCCTGCAGAACAGTA 58.496 47.619 17.39 0.00 45.68 2.74
2533 2601 0.317160 TGAAACGGACGCTCTGATGT 59.683 50.000 0.00 0.00 0.00 3.06
2545 2613 1.228124 TGACCTGGCCTTGAAACGG 60.228 57.895 3.32 0.00 0.00 4.44
2578 2646 8.572855 AATCCTTTGATTCTTTACTTCTCCAG 57.427 34.615 0.00 0.00 36.45 3.86
2627 2695 8.746922 TGAGTCAAATAAATGCTTGTTGAATC 57.253 30.769 5.48 5.48 0.00 2.52
2649 2717 8.681806 TCTAGAATGAGACTAACAAGACATGAG 58.318 37.037 0.00 0.00 0.00 2.90
2659 2727 8.643324 ACCAATGGTATCTAGAATGAGACTAAC 58.357 37.037 1.52 0.00 32.11 2.34
2669 2737 8.713971 ACATCACATAACCAATGGTATCTAGAA 58.286 33.333 4.88 0.00 40.16 2.10
2670 2738 8.262601 ACATCACATAACCAATGGTATCTAGA 57.737 34.615 4.88 2.18 40.16 2.43
2708 2776 8.536175 TCAAACAACATTTTATAAAGGGATCCC 58.464 33.333 24.59 24.59 0.00 3.85
2770 2838 4.399618 TGCTTGCCACACTACTTAAAAACA 59.600 37.500 0.00 0.00 0.00 2.83
2771 2839 4.927422 TGCTTGCCACACTACTTAAAAAC 58.073 39.130 0.00 0.00 0.00 2.43
2773 2841 4.642885 AGTTGCTTGCCACACTACTTAAAA 59.357 37.500 0.00 0.00 0.00 1.52
2776 2844 3.138304 CAGTTGCTTGCCACACTACTTA 58.862 45.455 0.00 0.00 0.00 2.24
2778 2846 1.597742 CAGTTGCTTGCCACACTACT 58.402 50.000 0.00 0.00 0.00 2.57
2780 2848 0.182537 ACCAGTTGCTTGCCACACTA 59.817 50.000 0.00 0.00 0.00 2.74
2781 2849 0.684153 AACCAGTTGCTTGCCACACT 60.684 50.000 0.00 0.00 0.00 3.55
2782 2850 1.001378 CTAACCAGTTGCTTGCCACAC 60.001 52.381 0.00 0.00 0.00 3.82
2787 2858 0.387750 GCTGCTAACCAGTTGCTTGC 60.388 55.000 0.00 1.93 43.71 4.01
2817 2888 5.700402 ACCTGAATTCCTAGCAACTATGT 57.300 39.130 2.27 0.00 0.00 2.29
2857 2928 9.540538 TTGGATTTGGAGAAATTATTAACCAGA 57.459 29.630 0.00 0.00 31.58 3.86
2939 3010 5.288804 CAACCACAAAGTTAATCAACCTGG 58.711 41.667 0.00 0.00 35.05 4.45
2949 3020 5.942961 TCTTATCCACCAACCACAAAGTTA 58.057 37.500 0.00 0.00 0.00 2.24
2975 3046 2.566833 TCCTTTGGACATGTGGACAG 57.433 50.000 1.15 0.00 0.00 3.51
2983 3054 5.505181 TTAGCTCTCTTTCCTTTGGACAT 57.495 39.130 0.00 0.00 0.00 3.06
3007 3078 7.524717 AAGACATGCCAAATACTAGTGTTTT 57.475 32.000 14.26 7.24 0.00 2.43
3009 3080 7.524717 AAAAGACATGCCAAATACTAGTGTT 57.475 32.000 5.39 1.49 0.00 3.32
3010 3081 7.524717 AAAAAGACATGCCAAATACTAGTGT 57.475 32.000 5.39 0.00 0.00 3.55
3020 3091 8.902806 CAGGTATCTAATAAAAAGACATGCCAA 58.097 33.333 0.00 0.00 0.00 4.52
3021 3092 7.013274 GCAGGTATCTAATAAAAAGACATGCCA 59.987 37.037 0.00 0.00 0.00 4.92
3022 3093 7.229506 AGCAGGTATCTAATAAAAAGACATGCC 59.770 37.037 5.27 0.00 0.00 4.40
3023 3094 8.159344 AGCAGGTATCTAATAAAAAGACATGC 57.841 34.615 0.00 0.00 0.00 4.06
3027 3098 9.478768 GGAGTAGCAGGTATCTAATAAAAAGAC 57.521 37.037 0.00 0.00 0.00 3.01
3028 3099 8.648693 GGGAGTAGCAGGTATCTAATAAAAAGA 58.351 37.037 0.00 0.00 0.00 2.52
3030 3101 8.562949 AGGGAGTAGCAGGTATCTAATAAAAA 57.437 34.615 0.00 0.00 0.00 1.94
3032 3103 6.724905 GGAGGGAGTAGCAGGTATCTAATAAA 59.275 42.308 0.00 0.00 0.00 1.40
3033 3104 6.254522 GGAGGGAGTAGCAGGTATCTAATAA 58.745 44.000 0.00 0.00 0.00 1.40
3034 3105 5.573090 CGGAGGGAGTAGCAGGTATCTAATA 60.573 48.000 0.00 0.00 0.00 0.98
3035 3106 4.679331 GGAGGGAGTAGCAGGTATCTAAT 58.321 47.826 0.00 0.00 0.00 1.73
3036 3107 3.498121 CGGAGGGAGTAGCAGGTATCTAA 60.498 52.174 0.00 0.00 0.00 2.10
3037 3108 2.040012 CGGAGGGAGTAGCAGGTATCTA 59.960 54.545 0.00 0.00 0.00 1.98
3038 3109 1.202952 CGGAGGGAGTAGCAGGTATCT 60.203 57.143 0.00 0.00 0.00 1.98
3039 3110 1.249407 CGGAGGGAGTAGCAGGTATC 58.751 60.000 0.00 0.00 0.00 2.24
3040 3111 0.556747 ACGGAGGGAGTAGCAGGTAT 59.443 55.000 0.00 0.00 0.00 2.73
3041 3112 0.106819 GACGGAGGGAGTAGCAGGTA 60.107 60.000 0.00 0.00 0.00 3.08
3042 3113 1.380112 GACGGAGGGAGTAGCAGGT 60.380 63.158 0.00 0.00 0.00 4.00
3043 3114 2.128507 GGACGGAGGGAGTAGCAGG 61.129 68.421 0.00 0.00 0.00 4.85
3044 3115 2.128507 GGGACGGAGGGAGTAGCAG 61.129 68.421 0.00 0.00 0.00 4.24
3045 3116 2.043248 GGGACGGAGGGAGTAGCA 60.043 66.667 0.00 0.00 0.00 3.49
3046 3117 0.178970 TATGGGACGGAGGGAGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
3047 3118 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
3048 3119 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3049 3120 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3050 3121 4.406003 CCTTATATTATGGGACGGAGGGAG 59.594 50.000 0.00 0.00 0.00 4.30
3051 3122 4.359105 CCTTATATTATGGGACGGAGGGA 58.641 47.826 0.00 0.00 0.00 4.20
3052 3123 3.454812 CCCTTATATTATGGGACGGAGGG 59.545 52.174 0.00 0.00 43.93 4.30
3053 3124 3.118371 GCCCTTATATTATGGGACGGAGG 60.118 52.174 9.14 0.00 43.93 4.30
3054 3125 3.430374 CGCCCTTATATTATGGGACGGAG 60.430 52.174 9.14 0.00 43.93 4.63
3055 3126 2.498481 CGCCCTTATATTATGGGACGGA 59.502 50.000 9.14 0.00 43.93 4.69
3056 3127 2.235402 ACGCCCTTATATTATGGGACGG 59.765 50.000 17.73 7.84 43.93 4.79
3057 3128 3.604875 ACGCCCTTATATTATGGGACG 57.395 47.619 9.14 12.40 43.93 4.79
3058 3129 6.644248 AAAAACGCCCTTATATTATGGGAC 57.356 37.500 9.14 1.53 43.93 4.46
3059 3130 7.229106 GTGTAAAAACGCCCTTATATTATGGGA 59.771 37.037 9.14 0.00 43.93 4.37
3060 3131 7.229907 AGTGTAAAAACGCCCTTATATTATGGG 59.770 37.037 0.00 0.00 44.01 4.00
3061 3132 8.161699 AGTGTAAAAACGCCCTTATATTATGG 57.838 34.615 0.00 0.00 0.00 2.74
3064 3135 9.316730 CACTAGTGTAAAAACGCCCTTATATTA 57.683 33.333 15.06 0.00 0.00 0.98
3065 3136 7.201670 GCACTAGTGTAAAAACGCCCTTATATT 60.202 37.037 23.44 0.00 0.00 1.28
3066 3137 6.259387 GCACTAGTGTAAAAACGCCCTTATAT 59.741 38.462 23.44 0.00 0.00 0.86
3067 3138 5.581874 GCACTAGTGTAAAAACGCCCTTATA 59.418 40.000 23.44 0.00 0.00 0.98
3068 3139 4.393990 GCACTAGTGTAAAAACGCCCTTAT 59.606 41.667 23.44 0.00 0.00 1.73
3069 3140 3.747529 GCACTAGTGTAAAAACGCCCTTA 59.252 43.478 23.44 0.00 0.00 2.69
3070 3141 2.551032 GCACTAGTGTAAAAACGCCCTT 59.449 45.455 23.44 0.00 0.00 3.95
3071 3142 2.148768 GCACTAGTGTAAAAACGCCCT 58.851 47.619 23.44 0.00 0.00 5.19
3072 3143 1.136169 CGCACTAGTGTAAAAACGCCC 60.136 52.381 23.44 2.54 0.00 6.13
3073 3144 1.528161 ACGCACTAGTGTAAAAACGCC 59.472 47.619 23.44 3.25 36.54 5.68
3074 3145 2.410646 GGACGCACTAGTGTAAAAACGC 60.411 50.000 23.44 12.48 38.91 4.84
3075 3146 2.156310 GGGACGCACTAGTGTAAAAACG 59.844 50.000 23.44 18.37 38.91 3.60
3076 3147 3.132925 TGGGACGCACTAGTGTAAAAAC 58.867 45.455 23.44 10.80 38.91 2.43
3077 3148 3.472283 TGGGACGCACTAGTGTAAAAA 57.528 42.857 23.44 3.76 38.91 1.94
3078 3149 3.688694 ATGGGACGCACTAGTGTAAAA 57.311 42.857 23.44 6.21 38.91 1.52
3079 3150 4.463539 TCTTATGGGACGCACTAGTGTAAA 59.536 41.667 23.44 5.21 38.91 2.01
3080 3151 4.018490 TCTTATGGGACGCACTAGTGTAA 58.982 43.478 23.44 11.27 38.91 2.41
3081 3152 3.623703 TCTTATGGGACGCACTAGTGTA 58.376 45.455 23.44 4.01 38.91 2.90
3082 3153 2.427453 CTCTTATGGGACGCACTAGTGT 59.573 50.000 23.44 5.15 42.17 3.55
3083 3154 2.799917 GCTCTTATGGGACGCACTAGTG 60.800 54.545 18.93 18.93 0.00 2.74
3084 3155 1.409427 GCTCTTATGGGACGCACTAGT 59.591 52.381 0.00 0.00 0.00 2.57
3085 3156 1.600663 CGCTCTTATGGGACGCACTAG 60.601 57.143 0.00 0.00 0.00 2.57
3086 3157 0.384309 CGCTCTTATGGGACGCACTA 59.616 55.000 0.00 0.00 0.00 2.74
3087 3158 1.141881 CGCTCTTATGGGACGCACT 59.858 57.895 0.00 0.00 0.00 4.40
3088 3159 0.739813 AACGCTCTTATGGGACGCAC 60.740 55.000 0.00 0.00 0.00 5.34
3089 3160 0.036765 AAACGCTCTTATGGGACGCA 60.037 50.000 0.00 0.00 0.00 5.24
3090 3161 1.084289 AAAACGCTCTTATGGGACGC 58.916 50.000 0.00 0.00 0.00 5.19
3091 3162 2.739913 TCAAAAACGCTCTTATGGGACG 59.260 45.455 0.00 0.00 0.00 4.79
3092 3163 3.500680 TGTCAAAAACGCTCTTATGGGAC 59.499 43.478 0.00 0.00 0.00 4.46
3093 3164 3.500680 GTGTCAAAAACGCTCTTATGGGA 59.499 43.478 0.00 0.00 35.42 4.37
3094 3165 3.502211 AGTGTCAAAAACGCTCTTATGGG 59.498 43.478 0.00 0.00 45.69 4.00
3095 3166 4.749245 AGTGTCAAAAACGCTCTTATGG 57.251 40.909 0.00 0.00 45.69 2.74
3096 3167 6.071463 GTGTAGTGTCAAAAACGCTCTTATG 58.929 40.000 0.00 0.00 45.69 1.90
3097 3168 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
3098 3169 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
3099 3170 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
3100 3171 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
3101 3172 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
3114 3185 6.746120 AGATCGTTTTTGACACTAGTGTAGT 58.254 36.000 27.98 6.32 45.05 2.73
3115 3186 7.639162 AAGATCGTTTTTGACACTAGTGTAG 57.361 36.000 27.98 13.05 45.05 2.74
3123 3194 9.878599 CCCATAATATAAGATCGTTTTTGACAC 57.121 33.333 0.00 0.00 0.00 3.67
3124 3195 9.839817 TCCCATAATATAAGATCGTTTTTGACA 57.160 29.630 0.00 0.00 0.00 3.58
3126 3197 8.984764 CGTCCCATAATATAAGATCGTTTTTGA 58.015 33.333 0.00 0.00 0.00 2.69
3127 3198 8.227791 CCGTCCCATAATATAAGATCGTTTTTG 58.772 37.037 0.00 0.00 0.00 2.44
3128 3199 8.152246 TCCGTCCCATAATATAAGATCGTTTTT 58.848 33.333 0.00 0.00 0.00 1.94
3129 3200 7.673180 TCCGTCCCATAATATAAGATCGTTTT 58.327 34.615 0.00 0.00 0.00 2.43
3130 3201 7.235935 TCCGTCCCATAATATAAGATCGTTT 57.764 36.000 0.00 0.00 0.00 3.60
3131 3202 6.845758 TCCGTCCCATAATATAAGATCGTT 57.154 37.500 0.00 0.00 0.00 3.85
3132 3203 6.127423 CCTTCCGTCCCATAATATAAGATCGT 60.127 42.308 0.00 0.00 0.00 3.73
3133 3204 6.096423 TCCTTCCGTCCCATAATATAAGATCG 59.904 42.308 0.00 0.00 0.00 3.69
3134 3205 7.124448 ACTCCTTCCGTCCCATAATATAAGATC 59.876 40.741 0.00 0.00 0.00 2.75
3135 3206 6.960542 ACTCCTTCCGTCCCATAATATAAGAT 59.039 38.462 0.00 0.00 0.00 2.40
3136 3207 6.210784 CACTCCTTCCGTCCCATAATATAAGA 59.789 42.308 0.00 0.00 0.00 2.10
3137 3208 6.398918 CACTCCTTCCGTCCCATAATATAAG 58.601 44.000 0.00 0.00 0.00 1.73
3138 3209 5.279809 GCACTCCTTCCGTCCCATAATATAA 60.280 44.000 0.00 0.00 0.00 0.98
3139 3210 4.222145 GCACTCCTTCCGTCCCATAATATA 59.778 45.833 0.00 0.00 0.00 0.86
3140 3211 3.008049 GCACTCCTTCCGTCCCATAATAT 59.992 47.826 0.00 0.00 0.00 1.28
3141 3212 2.367567 GCACTCCTTCCGTCCCATAATA 59.632 50.000 0.00 0.00 0.00 0.98
3142 3213 1.141053 GCACTCCTTCCGTCCCATAAT 59.859 52.381 0.00 0.00 0.00 1.28
3143 3214 0.539986 GCACTCCTTCCGTCCCATAA 59.460 55.000 0.00 0.00 0.00 1.90
3144 3215 0.325296 AGCACTCCTTCCGTCCCATA 60.325 55.000 0.00 0.00 0.00 2.74
3145 3216 0.325296 TAGCACTCCTTCCGTCCCAT 60.325 55.000 0.00 0.00 0.00 4.00
3146 3217 0.325296 ATAGCACTCCTTCCGTCCCA 60.325 55.000 0.00 0.00 0.00 4.37
3147 3218 0.831307 AATAGCACTCCTTCCGTCCC 59.169 55.000 0.00 0.00 0.00 4.46
3148 3219 2.693267 AAATAGCACTCCTTCCGTCC 57.307 50.000 0.00 0.00 0.00 4.79
3149 3220 7.781548 TTTATAAAATAGCACTCCTTCCGTC 57.218 36.000 0.00 0.00 0.00 4.79
3150 3221 7.773690 ACATTTATAAAATAGCACTCCTTCCGT 59.226 33.333 1.21 0.00 0.00 4.69
3151 3222 8.154649 ACATTTATAAAATAGCACTCCTTCCG 57.845 34.615 1.21 0.00 0.00 4.30
3152 3223 9.736023 CAACATTTATAAAATAGCACTCCTTCC 57.264 33.333 1.21 0.00 0.00 3.46
3156 3227 8.807581 GCAACAACATTTATAAAATAGCACTCC 58.192 33.333 1.21 0.00 0.00 3.85
3157 3228 9.573133 AGCAACAACATTTATAAAATAGCACTC 57.427 29.630 1.21 0.00 0.00 3.51
3158 3229 9.927668 AAGCAACAACATTTATAAAATAGCACT 57.072 25.926 1.21 0.00 0.00 4.40
3203 3275 5.411669 CCCACAGACTACCATTACAAAAGAC 59.588 44.000 0.00 0.00 0.00 3.01
3259 3331 7.345392 ACCTCCGTACCAAAATATAAGACCTTA 59.655 37.037 0.00 0.00 0.00 2.69
3260 3332 6.157471 ACCTCCGTACCAAAATATAAGACCTT 59.843 38.462 0.00 0.00 0.00 3.50
3261 3333 5.664457 ACCTCCGTACCAAAATATAAGACCT 59.336 40.000 0.00 0.00 0.00 3.85
3262 3334 5.922053 ACCTCCGTACCAAAATATAAGACC 58.078 41.667 0.00 0.00 0.00 3.85
3343 3427 0.040499 TTTTAGCCACCCATGACCCC 59.960 55.000 0.00 0.00 0.00 4.95
3349 3433 1.476488 GACGCATTTTTAGCCACCCAT 59.524 47.619 0.00 0.00 0.00 4.00
3361 3445 1.247567 CACTCCCTTTGGACGCATTT 58.752 50.000 0.00 0.00 35.03 2.32
3366 3450 2.742372 CGCCACTCCCTTTGGACG 60.742 66.667 0.00 0.00 36.02 4.79
3368 3452 1.072505 GAACGCCACTCCCTTTGGA 59.927 57.895 0.00 0.00 36.02 3.53
3369 3453 0.537371 AAGAACGCCACTCCCTTTGG 60.537 55.000 0.00 0.00 37.17 3.28
3370 3454 0.593128 CAAGAACGCCACTCCCTTTG 59.407 55.000 0.00 0.00 0.00 2.77
3371 3455 0.182775 ACAAGAACGCCACTCCCTTT 59.817 50.000 0.00 0.00 0.00 3.11
3372 3456 0.535102 CACAAGAACGCCACTCCCTT 60.535 55.000 0.00 0.00 0.00 3.95
3373 3457 1.071471 CACAAGAACGCCACTCCCT 59.929 57.895 0.00 0.00 0.00 4.20
3374 3458 1.966451 CCACAAGAACGCCACTCCC 60.966 63.158 0.00 0.00 0.00 4.30
3375 3459 1.070786 TCCACAAGAACGCCACTCC 59.929 57.895 0.00 0.00 0.00 3.85
3376 3460 1.557443 CGTCCACAAGAACGCCACTC 61.557 60.000 0.00 0.00 0.00 3.51
3377 3461 1.594293 CGTCCACAAGAACGCCACT 60.594 57.895 0.00 0.00 0.00 4.00
3378 3462 1.828331 GACGTCCACAAGAACGCCAC 61.828 60.000 3.51 0.00 0.00 5.01
3379 3463 1.593209 GACGTCCACAAGAACGCCA 60.593 57.895 3.51 0.00 0.00 5.69
3380 3464 1.557443 CTGACGTCCACAAGAACGCC 61.557 60.000 14.12 0.00 0.00 5.68
3381 3465 0.596600 TCTGACGTCCACAAGAACGC 60.597 55.000 14.12 0.00 0.00 4.84
3382 3466 1.129326 GTCTGACGTCCACAAGAACG 58.871 55.000 14.12 0.00 0.00 3.95
3383 3467 2.218953 TGTCTGACGTCCACAAGAAC 57.781 50.000 14.12 4.99 0.00 3.01
3384 3468 2.364002 TCATGTCTGACGTCCACAAGAA 59.636 45.455 18.33 7.08 0.00 2.52
3385 3469 1.960689 TCATGTCTGACGTCCACAAGA 59.039 47.619 18.33 16.59 0.00 3.02
3386 3470 2.438868 TCATGTCTGACGTCCACAAG 57.561 50.000 18.33 14.89 0.00 3.16
3387 3471 3.401033 AATCATGTCTGACGTCCACAA 57.599 42.857 18.33 6.57 33.22 3.33
3388 3472 3.244044 TGAAATCATGTCTGACGTCCACA 60.244 43.478 14.12 15.90 33.22 4.17
3389 3473 3.325870 TGAAATCATGTCTGACGTCCAC 58.674 45.455 14.12 10.37 33.22 4.02
3390 3474 3.588955 CTGAAATCATGTCTGACGTCCA 58.411 45.455 14.12 4.08 33.22 4.02
3391 3475 2.932614 CCTGAAATCATGTCTGACGTCC 59.067 50.000 14.12 0.00 33.22 4.79
3392 3476 3.589988 ACCTGAAATCATGTCTGACGTC 58.410 45.455 9.11 9.11 33.22 4.34
3393 3477 3.589988 GACCTGAAATCATGTCTGACGT 58.410 45.455 10.44 0.00 38.12 4.34
3394 3478 2.932614 GGACCTGAAATCATGTCTGACG 59.067 50.000 15.36 0.00 40.08 4.35
3395 3479 3.942829 TGGACCTGAAATCATGTCTGAC 58.057 45.455 15.36 0.00 40.08 3.51
3396 3480 4.019051 ACATGGACCTGAAATCATGTCTGA 60.019 41.667 15.36 6.30 44.51 3.27
3397 3481 4.267536 ACATGGACCTGAAATCATGTCTG 58.732 43.478 15.36 10.74 44.51 3.51
3398 3482 4.581309 ACATGGACCTGAAATCATGTCT 57.419 40.909 15.36 0.00 44.51 3.41
3399 3483 5.882557 AGTAACATGGACCTGAAATCATGTC 59.117 40.000 9.52 9.52 46.27 3.06
3401 3485 7.011763 CAGTAGTAACATGGACCTGAAATCATG 59.988 40.741 0.00 0.00 41.74 3.07
3402 3486 7.050377 CAGTAGTAACATGGACCTGAAATCAT 58.950 38.462 0.00 0.00 0.00 2.45
3403 3487 6.406370 CAGTAGTAACATGGACCTGAAATCA 58.594 40.000 0.00 0.00 0.00 2.57
3404 3488 5.817816 CCAGTAGTAACATGGACCTGAAATC 59.182 44.000 0.00 0.00 36.09 2.17
3405 3489 5.745227 CCAGTAGTAACATGGACCTGAAAT 58.255 41.667 0.00 0.00 36.09 2.17
3406 3490 4.564821 GCCAGTAGTAACATGGACCTGAAA 60.565 45.833 0.00 0.00 36.09 2.69
3407 3491 3.055385 GCCAGTAGTAACATGGACCTGAA 60.055 47.826 0.00 0.00 36.09 3.02
3408 3492 2.500098 GCCAGTAGTAACATGGACCTGA 59.500 50.000 0.00 0.00 36.09 3.86
3472 3566 2.525368 ACCAGGGTAAAAGAACATGGC 58.475 47.619 0.00 0.00 33.32 4.40
3511 3605 2.086869 CTGTCCATGGACCATGTTCAC 58.913 52.381 36.27 21.87 43.97 3.18
3527 3621 4.137116 TCAGGCATACCAATGTACTGTC 57.863 45.455 0.00 0.00 39.34 3.51
3531 3625 5.835113 ATGTTTCAGGCATACCAATGTAC 57.165 39.130 0.00 0.00 39.06 2.90
3585 3686 7.759886 TGTGAAGCTACTGACTGTCATAAATAC 59.240 37.037 11.45 4.68 0.00 1.89
3600 3701 4.586841 AGACTTGAACTCTGTGAAGCTACT 59.413 41.667 0.00 0.00 0.00 2.57
3602 3703 4.830046 AGAGACTTGAACTCTGTGAAGCTA 59.170 41.667 0.00 0.00 42.20 3.32
3603 3704 3.640967 AGAGACTTGAACTCTGTGAAGCT 59.359 43.478 0.00 0.00 42.20 3.74
3604 3705 3.988819 AGAGACTTGAACTCTGTGAAGC 58.011 45.455 0.00 0.00 42.20 3.86
3630 3741 5.779806 ATTCTGGATCTCGTTTGTTTACG 57.220 39.130 0.00 0.00 42.68 3.18
3721 3836 0.255890 TAAAGGCTCTCACCCATGGC 59.744 55.000 6.09 0.00 0.00 4.40
3748 3863 3.751175 CCGTTGTTTTTCTCATCTAGCCA 59.249 43.478 0.00 0.00 0.00 4.75
3749 3864 3.751698 ACCGTTGTTTTTCTCATCTAGCC 59.248 43.478 0.00 0.00 0.00 3.93
3806 3921 5.739161 GTCAACAGTCTTGCTAGTTTTGTTG 59.261 40.000 22.22 22.22 36.45 3.33
3808 3923 4.034048 CGTCAACAGTCTTGCTAGTTTTGT 59.966 41.667 0.00 0.00 0.00 2.83
3831 3946 1.754234 ACCATTGCGGCTCCATTCC 60.754 57.895 0.00 0.00 39.03 3.01
3862 3977 8.487313 TTCATGTTAGCATCAATTACTAACGT 57.513 30.769 0.00 0.00 45.58 3.99
3904 4019 6.665992 ACTGTTGACTAGTAATGGAAGACA 57.334 37.500 0.00 0.00 0.00 3.41
3905 4020 8.467598 TCATACTGTTGACTAGTAATGGAAGAC 58.532 37.037 0.00 0.00 34.59 3.01
3952 4067 6.205464 ACACAGATCACAACTTTGATAACAGG 59.795 38.462 0.00 0.00 36.30 4.00
3955 4070 8.345565 AGAAACACAGATCACAACTTTGATAAC 58.654 33.333 0.00 0.00 36.30 1.89
4204 4327 5.252586 ACTACCGATAGAAGCCATAGGTA 57.747 43.478 0.00 0.00 33.91 3.08
4332 4456 7.039882 CAGTAGACACCACGGAATAATACTTT 58.960 38.462 0.00 0.00 0.00 2.66
4392 4516 3.942748 GCCGGGTGTAATTTGTATCTTCA 59.057 43.478 2.18 0.00 0.00 3.02
4394 4518 3.053917 AGGCCGGGTGTAATTTGTATCTT 60.054 43.478 2.18 0.00 0.00 2.40
4401 4525 1.064314 TGCATAGGCCGGGTGTAATTT 60.064 47.619 2.18 0.00 40.13 1.82
4450 4574 3.763097 TTGTCTTTCAGTTGTGTGCAG 57.237 42.857 0.00 0.00 0.00 4.41
4601 4725 3.454042 TTTTGTTCACATCTCATCGCG 57.546 42.857 0.00 0.00 0.00 5.87
4602 4726 5.911280 CCATATTTTGTTCACATCTCATCGC 59.089 40.000 0.00 0.00 0.00 4.58
4690 4814 9.871238 CTAAGTCATAGGTAGTTACACAAACAT 57.129 33.333 0.00 0.00 40.83 2.71
4691 4815 8.863086 ACTAAGTCATAGGTAGTTACACAAACA 58.137 33.333 0.00 0.00 36.92 2.83
4692 4816 9.702494 AACTAAGTCATAGGTAGTTACACAAAC 57.298 33.333 0.00 0.00 36.53 2.93
4693 4817 9.918630 GAACTAAGTCATAGGTAGTTACACAAA 57.081 33.333 0.00 0.00 38.01 2.83
4694 4818 9.081204 TGAACTAAGTCATAGGTAGTTACACAA 57.919 33.333 0.00 0.00 38.01 3.33
4695 4819 8.640063 TGAACTAAGTCATAGGTAGTTACACA 57.360 34.615 0.00 0.00 38.01 3.72
4869 4993 7.437267 ACCACGGAATAATAATACTTCTCAACG 59.563 37.037 0.00 0.00 0.00 4.10
4881 5005 7.127012 TCCAATAGACACCACGGAATAATAA 57.873 36.000 0.00 0.00 0.00 1.40
4885 5099 3.181469 GCTCCAATAGACACCACGGAATA 60.181 47.826 0.00 0.00 0.00 1.75
4892 5106 4.009675 GACAATTGCTCCAATAGACACCA 58.990 43.478 5.05 0.00 32.43 4.17
4968 5182 6.732862 AGGCTGGATATAATTGGTATCTCTGT 59.267 38.462 10.61 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.