Multiple sequence alignment - TraesCS2A01G088800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G088800 chr2A 100.000 3550 0 0 1 3550 42154985 42151436 0.000000e+00 6556
1 TraesCS2A01G088800 chr2A 82.574 746 70 39 90 818 597070030 597070732 1.410000e-168 603
2 TraesCS2A01G088800 chr2D 88.267 2821 203 63 9 2766 37253855 37251100 0.000000e+00 3258
3 TraesCS2A01G088800 chr2D 82.379 227 29 9 1716 1939 285064581 285064363 1.680000e-43 187
4 TraesCS2A01G088800 chr2B 86.253 2837 230 87 9 2766 64990299 64987544 0.000000e+00 2931
5 TraesCS2A01G088800 chr2B 91.082 527 20 5 2254 2766 64949609 64949096 0.000000e+00 688
6 TraesCS2A01G088800 chr2B 80.279 502 60 19 2869 3368 39979482 39979946 3.390000e-90 342
7 TraesCS2A01G088800 chr2B 82.474 194 25 7 3033 3223 12284068 12284255 1.020000e-35 161
8 TraesCS2A01G088800 chr2B 93.458 107 7 0 2158 2264 64950500 64950394 3.670000e-35 159
9 TraesCS2A01G088800 chr6B 84.736 832 64 26 10 827 267740692 267741474 0.000000e+00 774
10 TraesCS2A01G088800 chr6B 85.515 573 47 26 259 818 91949261 91949810 1.850000e-157 566
11 TraesCS2A01G088800 chr6B 84.138 580 57 27 257 824 76737172 76736616 2.430000e-146 529
12 TraesCS2A01G088800 chr6B 83.710 221 25 9 1716 1933 199961595 199961807 7.770000e-47 198
13 TraesCS2A01G088800 chr6B 81.034 174 23 5 2119 2289 30286380 30286546 2.880000e-26 130
14 TraesCS2A01G088800 chr7A 89.149 599 28 7 2869 3448 509225250 509224670 0.000000e+00 712
15 TraesCS2A01G088800 chr7A 82.205 753 73 43 90 824 633536895 633536186 3.050000e-165 592
16 TraesCS2A01G088800 chr7A 81.963 754 73 44 90 824 633542278 633541569 6.610000e-162 580
17 TraesCS2A01G088800 chr1D 86.711 602 48 12 2873 3448 257406444 257405849 1.070000e-179 640
18 TraesCS2A01G088800 chr7D 86.129 620 52 21 2856 3448 19023203 19023815 3.860000e-179 638
19 TraesCS2A01G088800 chr7D 86.349 608 49 21 2868 3448 119776221 119775621 1.800000e-177 632
20 TraesCS2A01G088800 chr6D 86.491 607 50 19 2868 3448 403807439 403808039 3.860000e-179 638
21 TraesCS2A01G088800 chr6D 84.072 609 49 12 2869 3448 8402668 8403257 8.670000e-151 544
22 TraesCS2A01G088800 chr6D 94.444 108 6 0 3443 3550 331202272 331202165 2.190000e-37 167
23 TraesCS2A01G088800 chr3B 84.828 580 53 24 257 824 164322353 164321797 5.180000e-153 551
24 TraesCS2A01G088800 chr3B 84.655 580 54 27 257 824 693619953 693619397 2.410000e-151 545
25 TraesCS2A01G088800 chr3B 84.642 573 52 27 259 818 690614015 690614564 4.030000e-149 538
26 TraesCS2A01G088800 chr3B 84.293 573 54 26 259 818 690625087 690625636 8.730000e-146 527
27 TraesCS2A01G088800 chr6A 82.572 591 60 19 2869 3440 164939035 164938469 6.890000e-132 481
28 TraesCS2A01G088800 chr4B 76.068 585 118 14 1959 2535 415121900 415122470 5.800000e-73 285
29 TraesCS2A01G088800 chr4A 92.308 195 13 2 3242 3435 27677545 27677352 3.490000e-70 276
30 TraesCS2A01G088800 chr4A 74.576 590 127 14 1959 2538 136617413 136616837 1.650000e-58 237
31 TraesCS2A01G088800 chr4D 75.468 587 121 14 1959 2535 336841148 336841721 7.560000e-67 265
32 TraesCS2A01G088800 chr3D 91.176 136 7 3 3089 3224 103372469 103372339 2.820000e-41 180
33 TraesCS2A01G088800 chr1A 95.370 108 5 0 3443 3550 10413382 10413275 4.710000e-39 172
34 TraesCS2A01G088800 chr5B 82.803 157 18 8 3230 3386 455802884 455803031 8.000000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G088800 chr2A 42151436 42154985 3549 True 6556.0 6556 100.000 1 3550 1 chr2A.!!$R1 3549
1 TraesCS2A01G088800 chr2A 597070030 597070732 702 False 603.0 603 82.574 90 818 1 chr2A.!!$F1 728
2 TraesCS2A01G088800 chr2D 37251100 37253855 2755 True 3258.0 3258 88.267 9 2766 1 chr2D.!!$R1 2757
3 TraesCS2A01G088800 chr2B 64987544 64990299 2755 True 2931.0 2931 86.253 9 2766 1 chr2B.!!$R1 2757
4 TraesCS2A01G088800 chr2B 64949096 64950500 1404 True 423.5 688 92.270 2158 2766 2 chr2B.!!$R2 608
5 TraesCS2A01G088800 chr6B 267740692 267741474 782 False 774.0 774 84.736 10 827 1 chr6B.!!$F4 817
6 TraesCS2A01G088800 chr6B 91949261 91949810 549 False 566.0 566 85.515 259 818 1 chr6B.!!$F2 559
7 TraesCS2A01G088800 chr6B 76736616 76737172 556 True 529.0 529 84.138 257 824 1 chr6B.!!$R1 567
8 TraesCS2A01G088800 chr7A 509224670 509225250 580 True 712.0 712 89.149 2869 3448 1 chr7A.!!$R1 579
9 TraesCS2A01G088800 chr7A 633536186 633536895 709 True 592.0 592 82.205 90 824 1 chr7A.!!$R2 734
10 TraesCS2A01G088800 chr7A 633541569 633542278 709 True 580.0 580 81.963 90 824 1 chr7A.!!$R3 734
11 TraesCS2A01G088800 chr1D 257405849 257406444 595 True 640.0 640 86.711 2873 3448 1 chr1D.!!$R1 575
12 TraesCS2A01G088800 chr7D 19023203 19023815 612 False 638.0 638 86.129 2856 3448 1 chr7D.!!$F1 592
13 TraesCS2A01G088800 chr7D 119775621 119776221 600 True 632.0 632 86.349 2868 3448 1 chr7D.!!$R1 580
14 TraesCS2A01G088800 chr6D 403807439 403808039 600 False 638.0 638 86.491 2868 3448 1 chr6D.!!$F2 580
15 TraesCS2A01G088800 chr6D 8402668 8403257 589 False 544.0 544 84.072 2869 3448 1 chr6D.!!$F1 579
16 TraesCS2A01G088800 chr3B 164321797 164322353 556 True 551.0 551 84.828 257 824 1 chr3B.!!$R1 567
17 TraesCS2A01G088800 chr3B 693619397 693619953 556 True 545.0 545 84.655 257 824 1 chr3B.!!$R2 567
18 TraesCS2A01G088800 chr3B 690614015 690614564 549 False 538.0 538 84.642 259 818 1 chr3B.!!$F1 559
19 TraesCS2A01G088800 chr3B 690625087 690625636 549 False 527.0 527 84.293 259 818 1 chr3B.!!$F2 559
20 TraesCS2A01G088800 chr6A 164938469 164939035 566 True 481.0 481 82.572 2869 3440 1 chr6A.!!$R1 571
21 TraesCS2A01G088800 chr4B 415121900 415122470 570 False 285.0 285 76.068 1959 2535 1 chr4B.!!$F1 576
22 TraesCS2A01G088800 chr4A 136616837 136617413 576 True 237.0 237 74.576 1959 2538 1 chr4A.!!$R2 579
23 TraesCS2A01G088800 chr4D 336841148 336841721 573 False 265.0 265 75.468 1959 2535 1 chr4D.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 181 0.038159 CGCAGGTCCGTCTTCTTCTT 60.038 55.0 0.00 0.0 0.00 2.52 F
235 247 0.105039 CTACTTCCGGTGATCCAGGC 59.895 60.0 0.00 0.0 0.00 4.85 F
876 928 0.179037 TCTTGCTCAACTGCAGCTGT 60.179 50.0 15.27 0.0 44.27 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1109 1183 0.327924 CACATGTGGAGGGGCTAACA 59.672 55.0 18.51 0.0 0.0 2.41 R
1646 1729 0.543749 ATAAGGAGGTCAGTGGCAGC 59.456 55.0 0.00 0.0 0.0 5.25 R
2863 3776 0.107456 CGCCTATCACTGCCCAATCT 59.893 55.0 0.00 0.0 0.0 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.546598 ATTCCATTCCTCCCCACGAC 59.453 55.000 0.00 0.00 0.00 4.34
117 124 1.233019 GCTGCTTCTGCTTCTGTTGA 58.767 50.000 0.00 0.00 40.48 3.18
118 125 1.811359 GCTGCTTCTGCTTCTGTTGAT 59.189 47.619 0.00 0.00 40.48 2.57
119 126 2.414293 GCTGCTTCTGCTTCTGTTGATG 60.414 50.000 0.00 0.00 40.48 3.07
174 181 0.038159 CGCAGGTCCGTCTTCTTCTT 60.038 55.000 0.00 0.00 0.00 2.52
176 183 1.273886 GCAGGTCCGTCTTCTTCTTCT 59.726 52.381 0.00 0.00 0.00 2.85
180 187 2.613223 GGTCCGTCTTCTTCTTCTTGGG 60.613 54.545 0.00 0.00 0.00 4.12
204 216 1.441682 GCTCGCTTGCTTGCTTGTC 60.442 57.895 0.00 0.00 0.00 3.18
235 247 0.105039 CTACTTCCGGTGATCCAGGC 59.895 60.000 0.00 0.00 0.00 4.85
344 363 0.951040 CCGTTGAACTCAGGTGAGCC 60.951 60.000 6.91 0.53 45.79 4.70
345 364 0.951040 CGTTGAACTCAGGTGAGCCC 60.951 60.000 6.91 0.19 45.79 5.19
373 392 2.885113 GGCGGCCTTGGTGATTTC 59.115 61.111 12.87 0.00 0.00 2.17
393 423 7.869937 TGATTTCAGTGCTATTAGTCATAGAGC 59.130 37.037 0.00 0.00 37.65 4.09
394 424 6.968263 TTCAGTGCTATTAGTCATAGAGCT 57.032 37.500 0.00 0.00 37.65 4.09
395 425 6.968263 TCAGTGCTATTAGTCATAGAGCTT 57.032 37.500 0.00 0.00 37.65 3.74
396 426 6.976088 TCAGTGCTATTAGTCATAGAGCTTC 58.024 40.000 0.00 0.00 37.65 3.86
397 427 6.775142 TCAGTGCTATTAGTCATAGAGCTTCT 59.225 38.462 0.00 0.00 37.65 2.85
398 428 7.286546 TCAGTGCTATTAGTCATAGAGCTTCTT 59.713 37.037 0.00 0.00 37.65 2.52
399 429 7.594758 CAGTGCTATTAGTCATAGAGCTTCTTC 59.405 40.741 0.00 0.00 37.65 2.87
400 430 7.286546 AGTGCTATTAGTCATAGAGCTTCTTCA 59.713 37.037 0.00 0.00 37.65 3.02
543 579 1.227060 GGCAATGATTTGAGGCGGC 60.227 57.895 0.00 0.00 34.60 6.53
683 724 9.229784 CATTTTTCTTCTGGTATCAATCAATCG 57.770 33.333 0.00 0.00 0.00 3.34
699 740 1.825090 ATCGTGCCAGCATCTGAAAA 58.175 45.000 0.00 0.00 32.44 2.29
726 767 7.415095 CGGATTAACAAATCTGAATTGGCACTA 60.415 37.037 10.01 0.00 37.68 2.74
766 810 6.018589 TGATTCCATACAGCTCGAGATAAG 57.981 41.667 18.75 0.66 0.00 1.73
792 844 5.700402 ATGCTTACTGAATACCCTGTTCT 57.300 39.130 0.00 0.00 0.00 3.01
809 861 4.641396 TGTTCTTACATCTGGAGGTGTTG 58.359 43.478 0.00 0.00 0.00 3.33
818 870 0.250858 TGGAGGTGTTGCCATGAGTG 60.251 55.000 0.00 0.00 40.61 3.51
824 876 3.642848 AGGTGTTGCCATGAGTGAAATTT 59.357 39.130 0.00 0.00 40.61 1.82
825 877 4.832266 AGGTGTTGCCATGAGTGAAATTTA 59.168 37.500 0.00 0.00 40.61 1.40
826 878 5.481473 AGGTGTTGCCATGAGTGAAATTTAT 59.519 36.000 0.00 0.00 40.61 1.40
827 879 6.014327 AGGTGTTGCCATGAGTGAAATTTATT 60.014 34.615 0.00 0.00 40.61 1.40
828 880 6.650390 GGTGTTGCCATGAGTGAAATTTATTT 59.350 34.615 0.00 0.00 37.17 1.40
829 881 7.816995 GGTGTTGCCATGAGTGAAATTTATTTA 59.183 33.333 0.00 0.00 37.17 1.40
830 882 8.647226 GTGTTGCCATGAGTGAAATTTATTTAC 58.353 33.333 0.00 0.00 0.00 2.01
831 883 8.584157 TGTTGCCATGAGTGAAATTTATTTACT 58.416 29.630 0.00 0.00 0.00 2.24
832 884 9.076596 GTTGCCATGAGTGAAATTTATTTACTC 57.923 33.333 13.32 13.32 34.59 2.59
833 885 7.771183 TGCCATGAGTGAAATTTATTTACTCC 58.229 34.615 15.74 6.64 33.92 3.85
834 886 6.912591 GCCATGAGTGAAATTTATTTACTCCG 59.087 38.462 15.74 10.21 33.92 4.63
867 919 4.036734 TGATCAAGGTGTTTCTTGCTCAAC 59.963 41.667 8.17 0.00 42.90 3.18
870 922 1.678101 AGGTGTTTCTTGCTCAACTGC 59.322 47.619 0.00 0.00 0.00 4.40
872 924 2.542411 GGTGTTTCTTGCTCAACTGCAG 60.542 50.000 13.48 13.48 44.27 4.41
873 925 1.066002 TGTTTCTTGCTCAACTGCAGC 59.934 47.619 15.27 0.00 44.27 5.25
874 926 1.336125 GTTTCTTGCTCAACTGCAGCT 59.664 47.619 15.27 0.00 44.27 4.24
875 927 0.949397 TTCTTGCTCAACTGCAGCTG 59.051 50.000 15.27 12.95 44.27 4.24
876 928 0.179037 TCTTGCTCAACTGCAGCTGT 60.179 50.000 15.27 0.00 44.27 4.40
878 930 1.066605 CTTGCTCAACTGCAGCTGTTT 59.933 47.619 15.27 3.51 44.27 2.83
881 933 1.336125 GCTCAACTGCAGCTGTTTCTT 59.664 47.619 15.27 0.00 33.75 2.52
884 936 3.808728 TCAACTGCAGCTGTTTCTTACT 58.191 40.909 15.27 0.00 0.00 2.24
885 937 3.809832 TCAACTGCAGCTGTTTCTTACTC 59.190 43.478 15.27 0.00 0.00 2.59
886 938 3.475566 ACTGCAGCTGTTTCTTACTCA 57.524 42.857 15.27 0.00 0.00 3.41
888 940 5.152623 ACTGCAGCTGTTTCTTACTCATA 57.847 39.130 15.27 0.00 0.00 2.15
889 941 5.738909 ACTGCAGCTGTTTCTTACTCATAT 58.261 37.500 15.27 0.00 0.00 1.78
890 942 5.583854 ACTGCAGCTGTTTCTTACTCATATG 59.416 40.000 15.27 0.00 0.00 1.78
891 943 5.733676 TGCAGCTGTTTCTTACTCATATGA 58.266 37.500 16.64 5.07 0.00 2.15
893 945 6.045318 GCAGCTGTTTCTTACTCATATGAGA 58.955 40.000 34.16 17.65 44.74 3.27
894 946 6.705381 GCAGCTGTTTCTTACTCATATGAGAT 59.295 38.462 34.16 21.58 44.74 2.75
895 947 7.307278 GCAGCTGTTTCTTACTCATATGAGATG 60.307 40.741 34.16 22.66 44.74 2.90
896 948 6.705381 AGCTGTTTCTTACTCATATGAGATGC 59.295 38.462 34.16 21.66 44.74 3.91
898 950 7.518052 GCTGTTTCTTACTCATATGAGATGCAC 60.518 40.741 34.16 21.84 44.74 4.57
900 952 6.484364 TTCTTACTCATATGAGATGCACCA 57.516 37.500 34.16 12.22 44.74 4.17
902 954 6.519382 TCTTACTCATATGAGATGCACCAAG 58.481 40.000 34.16 22.08 44.74 3.61
903 955 4.767578 ACTCATATGAGATGCACCAAGT 57.232 40.909 34.16 10.00 44.74 3.16
905 957 6.430962 ACTCATATGAGATGCACCAAGTAT 57.569 37.500 34.16 8.54 44.74 2.12
911 973 9.144747 CATATGAGATGCACCAAGTATACTAAC 57.855 37.037 5.65 0.00 0.00 2.34
912 974 5.914033 TGAGATGCACCAAGTATACTAACC 58.086 41.667 5.65 0.00 0.00 2.85
928 990 9.188588 GTATACTAACCTTTTCTTTGTTTTGCC 57.811 33.333 0.00 0.00 0.00 4.52
937 999 2.137523 CTTTGTTTTGCCTCATGTGCC 58.862 47.619 7.37 0.00 0.00 5.01
940 1002 0.387239 GTTTTGCCTCATGTGCCGTC 60.387 55.000 7.37 0.00 0.00 4.79
942 1004 4.758251 TGCCTCATGTGCCGTCGG 62.758 66.667 6.99 6.99 0.00 4.79
943 1005 4.451150 GCCTCATGTGCCGTCGGA 62.451 66.667 17.49 0.00 0.00 4.55
944 1006 2.264480 CCTCATGTGCCGTCGGAA 59.736 61.111 17.49 0.00 0.00 4.30
963 1025 3.378112 GGAACATCAGAAATTCGCATCCA 59.622 43.478 0.00 0.00 0.00 3.41
975 1037 1.824852 TCGCATCCAAGAAGACTGCTA 59.175 47.619 0.00 0.00 0.00 3.49
979 1041 3.368843 GCATCCAAGAAGACTGCTACAGA 60.369 47.826 0.78 0.00 35.18 3.41
982 1044 6.577103 CATCCAAGAAGACTGCTACAGATAA 58.423 40.000 0.78 0.00 35.18 1.75
983 1045 5.967088 TCCAAGAAGACTGCTACAGATAAC 58.033 41.667 0.78 0.00 35.18 1.89
985 1047 5.105146 CCAAGAAGACTGCTACAGATAACCT 60.105 44.000 0.78 0.00 35.18 3.50
986 1048 6.402222 CAAGAAGACTGCTACAGATAACCTT 58.598 40.000 0.78 0.00 35.18 3.50
987 1049 6.215495 AGAAGACTGCTACAGATAACCTTC 57.785 41.667 0.78 0.00 35.18 3.46
988 1050 5.128008 AGAAGACTGCTACAGATAACCTTCC 59.872 44.000 0.78 0.00 35.18 3.46
989 1051 3.707102 AGACTGCTACAGATAACCTTCCC 59.293 47.826 0.78 0.00 35.18 3.97
991 1053 3.197983 ACTGCTACAGATAACCTTCCCAC 59.802 47.826 0.78 0.00 35.18 4.61
992 1054 2.504175 TGCTACAGATAACCTTCCCACC 59.496 50.000 0.00 0.00 0.00 4.61
993 1055 2.504175 GCTACAGATAACCTTCCCACCA 59.496 50.000 0.00 0.00 0.00 4.17
994 1056 3.136626 GCTACAGATAACCTTCCCACCAT 59.863 47.826 0.00 0.00 0.00 3.55
995 1057 3.933861 ACAGATAACCTTCCCACCATC 57.066 47.619 0.00 0.00 0.00 3.51
996 1058 3.464828 ACAGATAACCTTCCCACCATCT 58.535 45.455 0.00 0.00 0.00 2.90
1000 1062 2.044793 AACCTTCCCACCATCTCTCA 57.955 50.000 0.00 0.00 0.00 3.27
1001 1063 2.277008 ACCTTCCCACCATCTCTCAT 57.723 50.000 0.00 0.00 0.00 2.90
1002 1064 1.842562 ACCTTCCCACCATCTCTCATG 59.157 52.381 0.00 0.00 0.00 3.07
1005 1067 1.227764 CCCACCATCTCTCATGCCG 60.228 63.158 0.00 0.00 0.00 5.69
1007 1069 1.890979 CACCATCTCTCATGCCGCC 60.891 63.158 0.00 0.00 0.00 6.13
1009 1071 2.418777 CATCTCTCATGCCGCCGA 59.581 61.111 0.00 0.00 0.00 5.54
1010 1072 1.953138 CATCTCTCATGCCGCCGAC 60.953 63.158 0.00 0.00 0.00 4.79
1011 1073 2.130426 ATCTCTCATGCCGCCGACT 61.130 57.895 0.00 0.00 0.00 4.18
1013 1075 4.193334 TCTCATGCCGCCGACTCG 62.193 66.667 0.00 0.00 0.00 4.18
1014 1076 4.193334 CTCATGCCGCCGACTCGA 62.193 66.667 0.00 0.00 0.00 4.04
1015 1077 4.193334 TCATGCCGCCGACTCGAG 62.193 66.667 11.84 11.84 0.00 4.04
1021 1083 4.544689 CGCCGACTCGAGCTCCTG 62.545 72.222 13.61 3.48 0.00 3.86
1022 1084 4.200283 GCCGACTCGAGCTCCTGG 62.200 72.222 13.61 8.42 0.00 4.45
1023 1085 4.200283 CCGACTCGAGCTCCTGGC 62.200 72.222 13.61 1.95 42.19 4.85
1024 1086 4.200283 CGACTCGAGCTCCTGGCC 62.200 72.222 13.61 0.00 43.05 5.36
1025 1087 3.071206 GACTCGAGCTCCTGGCCA 61.071 66.667 13.61 4.71 43.05 5.36
1026 1088 3.363844 GACTCGAGCTCCTGGCCAC 62.364 68.421 13.61 0.00 43.05 5.01
1027 1089 3.385384 CTCGAGCTCCTGGCCACA 61.385 66.667 0.00 0.00 43.05 4.17
1028 1090 2.922503 TCGAGCTCCTGGCCACAA 60.923 61.111 0.00 0.00 43.05 3.33
1031 1093 1.376466 GAGCTCCTGGCCACAAGAA 59.624 57.895 0.00 0.00 43.05 2.52
1034 1096 2.032528 TCCTGGCCACAAGAAGCG 59.967 61.111 0.00 0.00 0.00 4.68
1036 1098 4.093952 CTGGCCACAAGAAGCGCG 62.094 66.667 0.00 0.00 0.00 6.86
1109 1183 3.134127 GCCGAAAGCCTCGCCATT 61.134 61.111 0.33 0.00 46.71 3.16
1111 1185 2.040544 CCGAAAGCCTCGCCATTGT 61.041 57.895 0.33 0.00 46.71 2.71
1126 1200 2.026641 CATTGTTAGCCCCTCCACATG 58.973 52.381 0.00 0.00 0.00 3.21
1178 1252 3.128242 CCAAGTCATGATCCTCAAGTTGC 59.872 47.826 0.00 0.00 0.00 4.17
1236 1310 2.356075 TACGGTTTGGTCACGGCG 60.356 61.111 4.80 4.80 0.00 6.46
1261 1335 0.978907 TGCAGCTCTCCTTGTCATGA 59.021 50.000 0.00 0.00 0.00 3.07
1368 1445 3.821033 GAGCATTTGTGACAGGTAACCTT 59.179 43.478 0.00 0.00 37.17 3.50
1369 1446 3.821033 AGCATTTGTGACAGGTAACCTTC 59.179 43.478 0.00 0.00 37.17 3.46
1370 1447 3.821033 GCATTTGTGACAGGTAACCTTCT 59.179 43.478 0.00 0.00 37.17 2.85
1373 1450 6.682861 GCATTTGTGACAGGTAACCTTCTTTT 60.683 38.462 0.00 0.00 37.17 2.27
1376 1453 6.930667 TGTGACAGGTAACCTTCTTTTTAC 57.069 37.500 0.00 0.00 37.17 2.01
1417 1500 7.535489 ACAATATTTAGAGTACTTCGGTTGC 57.465 36.000 0.00 0.00 0.00 4.17
1645 1728 4.909088 TCCCAGTACAGGAAAAAGGTAAGA 59.091 41.667 5.75 0.00 0.00 2.10
1646 1729 5.012768 TCCCAGTACAGGAAAAAGGTAAGAG 59.987 44.000 5.75 0.00 0.00 2.85
1670 1753 1.556911 CCACTGACCTCCTTATGCACT 59.443 52.381 0.00 0.00 0.00 4.40
1706 1796 1.603802 ACACATTGACTGAAACGGCTG 59.396 47.619 0.00 0.00 0.00 4.85
1748 1838 1.133199 TCCAAAGTGGGCCACAAGAAT 60.133 47.619 36.28 14.62 38.32 2.40
1751 1841 3.433456 CCAAAGTGGGCCACAAGAATTTT 60.433 43.478 36.28 23.44 36.74 1.82
1754 1844 6.295575 CCAAAGTGGGCCACAAGAATTTTATA 60.296 38.462 36.28 0.00 36.74 0.98
1820 1910 4.580167 GCTATGGTGTTTGAATATGCTCCA 59.420 41.667 0.00 0.00 0.00 3.86
1826 1916 5.105392 GGTGTTTGAATATGCTCCAAATGGA 60.105 40.000 1.53 1.53 43.08 3.41
1915 2013 8.915057 ACAGAATGATTTCCTATAATGTCCAG 57.085 34.615 0.00 0.00 39.69 3.86
1920 2018 6.280643 TGATTTCCTATAATGTCCAGACACG 58.719 40.000 1.88 0.00 45.05 4.49
1921 2019 5.670792 TTTCCTATAATGTCCAGACACGT 57.329 39.130 1.88 0.00 45.05 4.49
1922 2020 4.913335 TCCTATAATGTCCAGACACGTC 57.087 45.455 1.88 0.00 45.05 4.34
1941 2039 7.352739 ACACGTCTCAACAATTTCAGTATTTC 58.647 34.615 0.00 0.00 0.00 2.17
1997 2095 1.487976 GAGAATCTGGACTGGATGGCA 59.512 52.381 0.00 0.00 0.00 4.92
2027 2125 8.727100 TTAGAATATCGATGGGGATAGCATAT 57.273 34.615 8.54 0.00 32.74 1.78
2079 2177 1.301716 GTCGTGCCAAGGAGCTTCA 60.302 57.895 0.00 0.00 0.00 3.02
2174 2275 0.317938 GATCCGATTCCGTCACCGAG 60.318 60.000 0.00 0.00 35.63 4.63
2176 2277 2.104331 CGATTCCGTCACCGAGGG 59.896 66.667 0.00 0.00 38.76 4.30
2334 3230 0.392729 GCCTCTTGCAGAGCTGATGT 60.393 55.000 0.85 0.00 40.98 3.06
2360 3259 1.925455 CCTGGGCTCCTTCCCTGAA 60.925 63.158 7.21 0.00 46.67 3.02
2465 3364 1.472201 GCGCAGATGAAGGAGATCACA 60.472 52.381 0.30 0.00 30.82 3.58
2572 3471 0.329596 GTGAATCCCTTGGGCAGTCT 59.670 55.000 0.00 0.00 0.00 3.24
2574 3473 2.173569 GTGAATCCCTTGGGCAGTCTAT 59.826 50.000 0.00 0.00 0.00 1.98
2576 3475 3.269381 TGAATCCCTTGGGCAGTCTATTT 59.731 43.478 0.00 0.00 0.00 1.40
2585 3490 2.508300 GGGCAGTCTATTTCCCCTGTTA 59.492 50.000 0.00 0.00 32.60 2.41
2637 3542 2.858745 TCCTTGTACTGGAAAGTTGGC 58.141 47.619 5.84 0.00 0.00 4.52
2757 3670 7.365741 GCCATGTTTACCTATGATTTGATCAG 58.634 38.462 0.00 0.00 43.53 2.90
2766 3679 8.095452 ACCTATGATTTGATCAGTTCTTAGGT 57.905 34.615 27.71 27.71 41.73 3.08
2767 3680 9.213777 ACCTATGATTTGATCAGTTCTTAGGTA 57.786 33.333 29.66 8.03 43.33 3.08
2768 3681 9.482627 CCTATGATTTGATCAGTTCTTAGGTAC 57.517 37.037 23.94 0.00 43.53 3.34
2771 3684 8.777865 TGATTTGATCAGTTCTTAGGTACAAG 57.222 34.615 0.00 0.00 33.59 3.16
2772 3685 8.593679 TGATTTGATCAGTTCTTAGGTACAAGA 58.406 33.333 0.00 0.00 33.59 3.02
2773 3686 9.606631 GATTTGATCAGTTCTTAGGTACAAGAT 57.393 33.333 0.00 0.00 34.59 2.40
2774 3687 9.606631 ATTTGATCAGTTCTTAGGTACAAGATC 57.393 33.333 0.00 8.82 34.59 2.75
2775 3688 7.718334 TGATCAGTTCTTAGGTACAAGATCA 57.282 36.000 12.24 12.24 35.95 2.92
2776 3689 8.134202 TGATCAGTTCTTAGGTACAAGATCAA 57.866 34.615 13.21 3.37 35.70 2.57
2777 3690 8.593679 TGATCAGTTCTTAGGTACAAGATCAAA 58.406 33.333 13.21 0.00 35.70 2.69
2778 3691 9.606631 GATCAGTTCTTAGGTACAAGATCAAAT 57.393 33.333 0.00 0.00 34.59 2.32
2779 3692 9.606631 ATCAGTTCTTAGGTACAAGATCAAATC 57.393 33.333 0.00 0.00 34.59 2.17
2780 3693 8.041323 TCAGTTCTTAGGTACAAGATCAAATCC 58.959 37.037 0.00 0.00 34.59 3.01
2781 3694 7.824289 CAGTTCTTAGGTACAAGATCAAATCCA 59.176 37.037 0.00 0.00 34.59 3.41
2782 3695 8.043710 AGTTCTTAGGTACAAGATCAAATCCAG 58.956 37.037 0.00 0.00 34.59 3.86
2783 3696 6.349300 TCTTAGGTACAAGATCAAATCCAGC 58.651 40.000 0.00 0.00 29.55 4.85
2784 3697 4.851639 AGGTACAAGATCAAATCCAGCT 57.148 40.909 0.00 0.00 0.00 4.24
2785 3698 5.957771 AGGTACAAGATCAAATCCAGCTA 57.042 39.130 0.00 0.00 0.00 3.32
2786 3699 5.923204 AGGTACAAGATCAAATCCAGCTAG 58.077 41.667 0.00 0.00 0.00 3.42
2787 3700 5.059833 GGTACAAGATCAAATCCAGCTAGG 58.940 45.833 0.00 0.00 39.47 3.02
2788 3701 3.549794 ACAAGATCAAATCCAGCTAGGC 58.450 45.455 0.00 0.00 37.29 3.93
2789 3702 3.201708 ACAAGATCAAATCCAGCTAGGCT 59.798 43.478 0.00 0.00 40.77 4.58
2790 3703 4.205587 CAAGATCAAATCCAGCTAGGCTT 58.794 43.478 0.00 0.00 36.40 4.35
2791 3704 4.516652 AGATCAAATCCAGCTAGGCTTT 57.483 40.909 0.00 0.00 36.40 3.51
2794 3707 1.135721 CAAATCCAGCTAGGCTTTGGC 59.864 52.381 16.97 0.00 45.44 4.52
2795 3708 0.627986 AATCCAGCTAGGCTTTGGCT 59.372 50.000 0.00 0.00 36.40 4.75
2796 3709 5.288827 CAAATCCAGCTAGGCTTTGGCTG 62.289 52.174 21.57 21.57 45.44 4.85
2797 3710 4.730487 CAGCTAGGCTTTGGCTGT 57.270 55.556 20.76 0.00 45.59 4.40
2798 3711 2.177950 CAGCTAGGCTTTGGCTGTG 58.822 57.895 20.76 5.58 45.59 3.66
2799 3712 0.321919 CAGCTAGGCTTTGGCTGTGA 60.322 55.000 20.76 0.00 45.59 3.58
2800 3713 0.401738 AGCTAGGCTTTGGCTGTGAA 59.598 50.000 8.18 0.00 39.30 3.18
2801 3714 1.202927 AGCTAGGCTTTGGCTGTGAAA 60.203 47.619 8.18 0.00 39.30 2.69
2802 3715 1.200948 GCTAGGCTTTGGCTGTGAAAG 59.799 52.381 0.00 0.00 39.30 2.62
2803 3716 2.508526 CTAGGCTTTGGCTGTGAAAGT 58.491 47.619 0.00 0.00 39.30 2.66
2804 3717 1.780503 AGGCTTTGGCTGTGAAAGTT 58.219 45.000 0.00 0.00 36.97 2.66
2805 3718 2.944129 AGGCTTTGGCTGTGAAAGTTA 58.056 42.857 0.00 0.00 36.97 2.24
2806 3719 3.295973 AGGCTTTGGCTGTGAAAGTTAA 58.704 40.909 0.00 0.00 36.97 2.01
2807 3720 3.704061 AGGCTTTGGCTGTGAAAGTTAAA 59.296 39.130 0.00 0.00 36.97 1.52
2808 3721 4.161377 AGGCTTTGGCTGTGAAAGTTAAAA 59.839 37.500 0.00 0.00 36.97 1.52
2809 3722 5.056480 GGCTTTGGCTGTGAAAGTTAAAAT 58.944 37.500 0.00 0.00 38.73 1.82
2810 3723 5.177511 GGCTTTGGCTGTGAAAGTTAAAATC 59.822 40.000 0.00 0.00 38.73 2.17
2811 3724 5.107875 GCTTTGGCTGTGAAAGTTAAAATCG 60.108 40.000 0.00 0.00 33.66 3.34
2812 3725 5.508200 TTGGCTGTGAAAGTTAAAATCGT 57.492 34.783 0.00 0.00 0.00 3.73
2813 3726 5.103290 TGGCTGTGAAAGTTAAAATCGTC 57.897 39.130 0.00 0.00 0.00 4.20
2814 3727 4.023536 TGGCTGTGAAAGTTAAAATCGTCC 60.024 41.667 0.00 0.00 0.00 4.79
2815 3728 4.023536 GGCTGTGAAAGTTAAAATCGTCCA 60.024 41.667 0.00 0.00 0.00 4.02
2816 3729 5.506649 GGCTGTGAAAGTTAAAATCGTCCAA 60.507 40.000 0.00 0.00 0.00 3.53
2817 3730 6.149633 GCTGTGAAAGTTAAAATCGTCCAAT 58.850 36.000 0.00 0.00 0.00 3.16
2818 3731 7.302524 GCTGTGAAAGTTAAAATCGTCCAATA 58.697 34.615 0.00 0.00 0.00 1.90
2819 3732 7.806014 GCTGTGAAAGTTAAAATCGTCCAATAA 59.194 33.333 0.00 0.00 0.00 1.40
2820 3733 9.672086 CTGTGAAAGTTAAAATCGTCCAATAAA 57.328 29.630 0.00 0.00 0.00 1.40
2832 3745 9.594478 AAATCGTCCAATAAATTAAAACCATCC 57.406 29.630 0.00 0.00 0.00 3.51
2833 3746 7.102847 TCGTCCAATAAATTAAAACCATCCC 57.897 36.000 0.00 0.00 0.00 3.85
2834 3747 6.663953 TCGTCCAATAAATTAAAACCATCCCA 59.336 34.615 0.00 0.00 0.00 4.37
2835 3748 7.178628 TCGTCCAATAAATTAAAACCATCCCAA 59.821 33.333 0.00 0.00 0.00 4.12
2836 3749 7.819900 CGTCCAATAAATTAAAACCATCCCAAA 59.180 33.333 0.00 0.00 0.00 3.28
2837 3750 9.508642 GTCCAATAAATTAAAACCATCCCAAAA 57.491 29.630 0.00 0.00 0.00 2.44
2862 3775 7.746526 AAATCTCAGCGAAATAAGCAATTTC 57.253 32.000 12.27 12.27 46.78 2.17
2884 3797 1.987807 ATTGGGCAGTGATAGGCGCT 61.988 55.000 7.64 0.00 42.72 5.92
2893 3806 3.083349 ATAGGCGCTGGCAGTCCA 61.083 61.111 23.27 13.32 42.47 4.02
2905 3818 1.290955 CAGTCCAGCCGAACGGTTA 59.709 57.895 14.63 0.00 37.65 2.85
2986 3907 3.064412 ACTTCCCCTTTTCCTCTTCCTT 58.936 45.455 0.00 0.00 0.00 3.36
3002 3923 1.132881 TCCTTTCCACAAAGCCCCATT 60.133 47.619 0.00 0.00 38.19 3.16
3080 4001 3.055719 GCCCTTGCGCTGCTGTAA 61.056 61.111 9.73 0.00 0.00 2.41
3135 4082 2.113774 GCCGGGATCCATGCATGA 59.886 61.111 28.31 14.16 0.00 3.07
3153 4100 2.154798 GAAGCAAAAACTCCGCCCCC 62.155 60.000 0.00 0.00 0.00 5.40
3331 4279 6.762661 CACCCTGTTGAATCATTTTGAAAACT 59.237 34.615 0.00 0.00 0.00 2.66
3412 4368 7.790027 ACTCTGATAGTAGCAAATGACATCTT 58.210 34.615 0.00 0.00 36.36 2.40
3435 4392 4.705507 TCGGTAGTAGCAAAACTCTGAGAT 59.294 41.667 12.44 0.00 0.00 2.75
3440 4397 6.360370 AGTAGCAAAACTCTGAGATGGTTA 57.640 37.500 12.44 0.00 0.00 2.85
3448 4405 5.171339 ACTCTGAGATGGTTACAGCAAAT 57.829 39.130 12.44 0.00 34.87 2.32
3449 4406 5.564550 ACTCTGAGATGGTTACAGCAAATT 58.435 37.500 12.44 0.00 34.87 1.82
3450 4407 5.413833 ACTCTGAGATGGTTACAGCAAATTG 59.586 40.000 12.44 0.00 34.87 2.32
3451 4408 5.559770 TCTGAGATGGTTACAGCAAATTGA 58.440 37.500 0.00 0.00 34.87 2.57
3452 4409 6.003326 TCTGAGATGGTTACAGCAAATTGAA 58.997 36.000 0.00 0.00 34.87 2.69
3453 4410 6.149973 TCTGAGATGGTTACAGCAAATTGAAG 59.850 38.462 0.00 0.00 34.87 3.02
3454 4411 5.769662 TGAGATGGTTACAGCAAATTGAAGT 59.230 36.000 0.00 0.00 34.87 3.01
3455 4412 6.017400 AGATGGTTACAGCAAATTGAAGTG 57.983 37.500 0.00 0.00 34.87 3.16
3456 4413 3.976169 TGGTTACAGCAAATTGAAGTGC 58.024 40.909 0.00 0.00 41.22 4.40
3463 4420 2.825205 GCAAATTGAAGTGCTGGTTGT 58.175 42.857 0.00 0.00 37.78 3.32
3464 4421 3.976169 GCAAATTGAAGTGCTGGTTGTA 58.024 40.909 0.00 0.00 37.78 2.41
3465 4422 3.983344 GCAAATTGAAGTGCTGGTTGTAG 59.017 43.478 0.00 0.00 37.78 2.74
3466 4423 3.923017 AATTGAAGTGCTGGTTGTAGC 57.077 42.857 0.00 0.00 43.95 3.58
3472 4429 2.793946 GCTGGTTGTAGCATGGCG 59.206 61.111 0.00 0.00 43.17 5.69
3473 4430 2.040544 GCTGGTTGTAGCATGGCGT 61.041 57.895 0.00 0.00 43.17 5.68
3474 4431 1.796151 CTGGTTGTAGCATGGCGTG 59.204 57.895 1.31 1.31 0.00 5.34
3475 4432 0.673333 CTGGTTGTAGCATGGCGTGA 60.673 55.000 11.71 0.00 0.00 4.35
3476 4433 0.953471 TGGTTGTAGCATGGCGTGAC 60.953 55.000 11.71 0.85 0.00 3.67
3477 4434 0.953471 GGTTGTAGCATGGCGTGACA 60.953 55.000 11.71 3.86 0.00 3.58
3478 4435 0.443869 GTTGTAGCATGGCGTGACAG 59.556 55.000 11.71 0.00 0.00 3.51
3479 4436 1.298157 TTGTAGCATGGCGTGACAGC 61.298 55.000 11.71 0.00 0.00 4.40
3480 4437 1.741401 GTAGCATGGCGTGACAGCA 60.741 57.895 11.71 0.00 39.27 4.41
3481 4438 1.091771 GTAGCATGGCGTGACAGCAT 61.092 55.000 11.71 0.00 39.27 3.79
3482 4439 0.392863 TAGCATGGCGTGACAGCATT 60.393 50.000 11.71 0.00 39.27 3.56
3483 4440 1.515519 GCATGGCGTGACAGCATTG 60.516 57.895 11.71 0.82 39.27 2.82
3484 4441 1.878070 CATGGCGTGACAGCATTGT 59.122 52.632 0.00 0.00 41.18 2.71
3485 4442 1.085893 CATGGCGTGACAGCATTGTA 58.914 50.000 0.00 0.00 37.76 2.41
3486 4443 1.063027 CATGGCGTGACAGCATTGTAG 59.937 52.381 0.00 0.00 37.76 2.74
3487 4444 1.298157 TGGCGTGACAGCATTGTAGC 61.298 55.000 2.32 0.00 37.76 3.58
3488 4445 1.298157 GGCGTGACAGCATTGTAGCA 61.298 55.000 2.32 0.00 37.76 3.49
3489 4446 0.516877 GCGTGACAGCATTGTAGCAA 59.483 50.000 0.00 0.00 37.76 3.91
3490 4447 1.069296 GCGTGACAGCATTGTAGCAAA 60.069 47.619 0.00 0.00 37.76 3.68
3491 4448 2.604373 GCGTGACAGCATTGTAGCAAAA 60.604 45.455 0.00 0.00 37.76 2.44
3492 4449 3.626977 CGTGACAGCATTGTAGCAAAAA 58.373 40.909 0.00 0.00 37.76 1.94
3508 4465 1.892209 AAAAATTCCCGACGCTGACT 58.108 45.000 0.00 0.00 0.00 3.41
3509 4466 2.754946 AAAATTCCCGACGCTGACTA 57.245 45.000 0.00 0.00 0.00 2.59
3510 4467 2.981859 AAATTCCCGACGCTGACTAT 57.018 45.000 0.00 0.00 0.00 2.12
3511 4468 2.225068 AATTCCCGACGCTGACTATG 57.775 50.000 0.00 0.00 0.00 2.23
3512 4469 0.389391 ATTCCCGACGCTGACTATGG 59.611 55.000 0.00 0.00 0.00 2.74
3513 4470 2.279517 CCCGACGCTGACTATGGC 60.280 66.667 0.00 0.00 0.00 4.40
3514 4471 2.494445 CCGACGCTGACTATGGCA 59.506 61.111 0.00 0.00 0.00 4.92
3515 4472 1.153647 CCGACGCTGACTATGGCAA 60.154 57.895 0.00 0.00 0.00 4.52
3516 4473 0.739462 CCGACGCTGACTATGGCAAA 60.739 55.000 0.00 0.00 0.00 3.68
3517 4474 0.647410 CGACGCTGACTATGGCAAAG 59.353 55.000 0.00 0.00 0.00 2.77
3518 4475 0.375106 GACGCTGACTATGGCAAAGC 59.625 55.000 0.00 0.00 0.00 3.51
3528 4485 4.671406 GGCAAAGCCGCAAAATGA 57.329 50.000 0.00 0.00 39.62 2.57
3529 4486 2.448477 GGCAAAGCCGCAAAATGAG 58.552 52.632 0.00 0.00 39.62 2.90
3530 4487 0.038343 GGCAAAGCCGCAAAATGAGA 60.038 50.000 0.00 0.00 39.62 3.27
3531 4488 1.063031 GCAAAGCCGCAAAATGAGAC 58.937 50.000 0.00 0.00 0.00 3.36
3532 4489 1.602668 GCAAAGCCGCAAAATGAGACA 60.603 47.619 0.00 0.00 0.00 3.41
3533 4490 2.053627 CAAAGCCGCAAAATGAGACAC 58.946 47.619 0.00 0.00 0.00 3.67
3534 4491 0.598065 AAGCCGCAAAATGAGACACC 59.402 50.000 0.00 0.00 0.00 4.16
3535 4492 0.250901 AGCCGCAAAATGAGACACCT 60.251 50.000 0.00 0.00 0.00 4.00
3536 4493 0.109597 GCCGCAAAATGAGACACCTG 60.110 55.000 0.00 0.00 0.00 4.00
3537 4494 1.238439 CCGCAAAATGAGACACCTGT 58.762 50.000 0.00 0.00 0.00 4.00
3538 4495 1.608590 CCGCAAAATGAGACACCTGTT 59.391 47.619 0.00 0.00 0.00 3.16
3539 4496 2.605338 CCGCAAAATGAGACACCTGTTG 60.605 50.000 0.00 0.00 0.00 3.33
3540 4497 2.033299 CGCAAAATGAGACACCTGTTGT 59.967 45.455 0.00 0.00 43.10 3.32
3541 4498 3.249799 CGCAAAATGAGACACCTGTTGTA 59.750 43.478 0.00 0.00 39.17 2.41
3542 4499 4.611355 CGCAAAATGAGACACCTGTTGTAG 60.611 45.833 0.00 0.00 39.17 2.74
3543 4500 4.787598 CAAAATGAGACACCTGTTGTAGC 58.212 43.478 0.00 0.00 39.17 3.58
3544 4501 3.769739 AATGAGACACCTGTTGTAGCA 57.230 42.857 0.00 0.00 39.17 3.49
3545 4502 3.769739 ATGAGACACCTGTTGTAGCAA 57.230 42.857 0.00 0.00 39.17 3.91
3546 4503 3.552132 TGAGACACCTGTTGTAGCAAA 57.448 42.857 0.00 0.00 39.17 3.68
3547 4504 3.879998 TGAGACACCTGTTGTAGCAAAA 58.120 40.909 0.00 0.00 39.17 2.44
3548 4505 4.265893 TGAGACACCTGTTGTAGCAAAAA 58.734 39.130 0.00 0.00 39.17 1.94
3549 4506 4.887071 TGAGACACCTGTTGTAGCAAAAAT 59.113 37.500 0.00 0.00 39.17 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.468771 GGGGAGGAATGGAATGGCAG 60.469 60.000 0.00 0.00 0.00 4.85
1 2 1.220518 TGGGGAGGAATGGAATGGCA 61.221 55.000 0.00 0.00 0.00 4.92
2 3 0.756815 GTGGGGAGGAATGGAATGGC 60.757 60.000 0.00 0.00 0.00 4.40
3 4 0.466189 CGTGGGGAGGAATGGAATGG 60.466 60.000 0.00 0.00 0.00 3.16
4 5 0.546122 TCGTGGGGAGGAATGGAATG 59.454 55.000 0.00 0.00 0.00 2.67
5 6 0.546598 GTCGTGGGGAGGAATGGAAT 59.453 55.000 0.00 0.00 0.00 3.01
6 7 1.559065 GGTCGTGGGGAGGAATGGAA 61.559 60.000 0.00 0.00 0.00 3.53
7 8 1.993391 GGTCGTGGGGAGGAATGGA 60.993 63.158 0.00 0.00 0.00 3.41
24 25 2.184830 CCATCATCAGCACGGCAGG 61.185 63.158 0.00 0.00 0.00 4.85
97 104 0.949397 CAACAGAAGCAGAAGCAGCA 59.051 50.000 0.00 0.00 45.49 4.41
117 124 1.000993 AGGAGACGGAGACCAGCAT 59.999 57.895 0.00 0.00 0.00 3.79
118 125 1.979155 CAGGAGACGGAGACCAGCA 60.979 63.158 0.00 0.00 0.00 4.41
119 126 2.888863 CAGGAGACGGAGACCAGC 59.111 66.667 0.00 0.00 0.00 4.85
153 160 3.591254 AAGAAGACGGACCTGCGGC 62.591 63.158 0.00 0.00 0.00 6.53
154 161 1.446272 GAAGAAGACGGACCTGCGG 60.446 63.158 0.00 0.00 0.00 5.69
174 181 0.534203 AAGCGAGCGAAAACCCAAGA 60.534 50.000 0.00 0.00 0.00 3.02
176 183 1.652012 CAAGCGAGCGAAAACCCAA 59.348 52.632 0.00 0.00 0.00 4.12
180 187 1.600284 GCAAGCAAGCGAGCGAAAAC 61.600 55.000 0.00 0.00 40.15 2.43
235 247 3.267860 GCGCCCAGAATCAGCTCG 61.268 66.667 0.00 0.00 0.00 5.03
373 392 6.980593 AGAAGCTCTATGACTAATAGCACTG 58.019 40.000 0.00 0.00 38.57 3.66
421 451 2.403252 ATTCCAACCCAAGCTCTACG 57.597 50.000 0.00 0.00 0.00 3.51
462 497 7.262772 ACAGTTATACAGTTGCATACATACGT 58.737 34.615 0.00 0.00 0.00 3.57
463 498 7.694388 ACAGTTATACAGTTGCATACATACG 57.306 36.000 0.00 0.00 0.00 3.06
596 632 2.361737 GCCACCTTTCAGCCTCCC 60.362 66.667 0.00 0.00 0.00 4.30
602 638 2.029649 CCAGATTTGTGCCACCTTTCAG 60.030 50.000 0.00 0.00 0.00 3.02
603 639 1.962807 CCAGATTTGTGCCACCTTTCA 59.037 47.619 0.00 0.00 0.00 2.69
683 724 0.109597 CCGTTTTCAGATGCTGGCAC 60.110 55.000 0.00 0.00 31.51 5.01
699 740 5.184864 TGCCAATTCAGATTTGTTAATCCGT 59.815 36.000 4.69 0.00 40.91 4.69
736 777 8.585018 TCTCGAGCTGTATGGAATCATTATAAA 58.415 33.333 7.81 0.00 34.96 1.40
747 791 3.222603 TGCTTATCTCGAGCTGTATGGA 58.777 45.455 7.81 2.00 40.75 3.41
766 810 5.308825 ACAGGGTATTCAGTAAGCATATGC 58.691 41.667 20.36 20.36 42.49 3.14
784 836 2.840651 ACCTCCAGATGTAAGAACAGGG 59.159 50.000 0.00 0.00 39.49 4.45
792 844 1.702401 TGGCAACACCTCCAGATGTAA 59.298 47.619 0.00 0.00 46.17 2.41
809 861 6.912591 CGGAGTAAATAAATTTCACTCATGGC 59.087 38.462 17.12 5.82 37.87 4.40
830 882 6.931281 ACACCTTGATCATCATAAATACGGAG 59.069 38.462 0.00 0.00 0.00 4.63
831 883 6.826668 ACACCTTGATCATCATAAATACGGA 58.173 36.000 0.00 0.00 0.00 4.69
832 884 7.496529 AACACCTTGATCATCATAAATACGG 57.503 36.000 0.00 0.00 0.00 4.02
833 885 8.830580 AGAAACACCTTGATCATCATAAATACG 58.169 33.333 0.00 0.00 0.00 3.06
851 903 1.405105 TGCAGTTGAGCAAGAAACACC 59.595 47.619 0.00 0.00 42.46 4.16
861 913 0.950116 AGAAACAGCTGCAGTTGAGC 59.050 50.000 33.68 21.34 36.65 4.26
867 919 5.814188 TCATATGAGTAAGAAACAGCTGCAG 59.186 40.000 15.27 10.11 0.00 4.41
870 922 7.307278 GCATCTCATATGAGTAAGAAACAGCTG 60.307 40.741 27.80 13.48 42.60 4.24
872 924 6.481313 TGCATCTCATATGAGTAAGAAACAGC 59.519 38.462 27.80 18.90 42.60 4.40
873 925 7.042187 GGTGCATCTCATATGAGTAAGAAACAG 60.042 40.741 27.80 11.93 42.60 3.16
874 926 6.763135 GGTGCATCTCATATGAGTAAGAAACA 59.237 38.462 27.80 16.11 42.60 2.83
875 927 6.763135 TGGTGCATCTCATATGAGTAAGAAAC 59.237 38.462 27.80 17.78 42.60 2.78
876 928 6.888105 TGGTGCATCTCATATGAGTAAGAAA 58.112 36.000 27.80 11.57 42.60 2.52
878 930 6.098838 ACTTGGTGCATCTCATATGAGTAAGA 59.901 38.462 27.80 12.80 42.60 2.10
881 933 5.876651 ACTTGGTGCATCTCATATGAGTA 57.123 39.130 27.80 17.05 42.60 2.59
884 936 7.544804 AGTATACTTGGTGCATCTCATATGA 57.455 36.000 5.07 5.07 0.00 2.15
885 937 9.144747 GTTAGTATACTTGGTGCATCTCATATG 57.855 37.037 11.40 0.00 0.00 1.78
886 938 8.314751 GGTTAGTATACTTGGTGCATCTCATAT 58.685 37.037 11.40 0.00 0.00 1.78
888 940 6.327626 AGGTTAGTATACTTGGTGCATCTCAT 59.672 38.462 11.40 0.00 0.00 2.90
889 941 5.661312 AGGTTAGTATACTTGGTGCATCTCA 59.339 40.000 11.40 0.00 0.00 3.27
890 942 6.163135 AGGTTAGTATACTTGGTGCATCTC 57.837 41.667 11.40 0.00 0.00 2.75
891 943 6.561519 AAGGTTAGTATACTTGGTGCATCT 57.438 37.500 11.40 0.00 0.00 2.90
892 944 7.553044 AGAAAAGGTTAGTATACTTGGTGCATC 59.447 37.037 11.40 0.00 0.00 3.91
893 945 7.402862 AGAAAAGGTTAGTATACTTGGTGCAT 58.597 34.615 11.40 0.00 0.00 3.96
894 946 6.775708 AGAAAAGGTTAGTATACTTGGTGCA 58.224 36.000 11.40 0.00 0.00 4.57
895 947 7.683437 AAGAAAAGGTTAGTATACTTGGTGC 57.317 36.000 11.40 0.00 0.00 5.01
896 948 9.063615 ACAAAGAAAAGGTTAGTATACTTGGTG 57.936 33.333 11.40 0.00 0.00 4.17
902 954 9.188588 GGCAAAACAAAGAAAAGGTTAGTATAC 57.811 33.333 0.00 0.00 0.00 1.47
903 955 9.138596 AGGCAAAACAAAGAAAAGGTTAGTATA 57.861 29.630 0.00 0.00 0.00 1.47
905 957 7.122948 TGAGGCAAAACAAAGAAAAGGTTAGTA 59.877 33.333 0.00 0.00 0.00 1.82
911 973 5.006941 CACATGAGGCAAAACAAAGAAAAGG 59.993 40.000 0.00 0.00 0.00 3.11
912 974 5.502869 GCACATGAGGCAAAACAAAGAAAAG 60.503 40.000 0.00 0.00 0.00 2.27
924 986 2.741985 CGACGGCACATGAGGCAA 60.742 61.111 16.49 0.00 0.00 4.52
928 990 0.740868 ATGTTCCGACGGCACATGAG 60.741 55.000 27.74 0.00 29.74 2.90
937 999 2.534939 GCGAATTTCTGATGTTCCGACG 60.535 50.000 0.00 0.00 0.00 5.12
940 1002 3.546815 GGATGCGAATTTCTGATGTTCCG 60.547 47.826 0.00 0.00 0.00 4.30
942 1004 4.621068 TGGATGCGAATTTCTGATGTTC 57.379 40.909 0.00 0.00 0.00 3.18
943 1005 4.701651 TCTTGGATGCGAATTTCTGATGTT 59.298 37.500 0.00 0.00 0.00 2.71
944 1006 4.264253 TCTTGGATGCGAATTTCTGATGT 58.736 39.130 0.00 0.00 0.00 3.06
963 1025 6.351456 GGAAGGTTATCTGTAGCAGTCTTCTT 60.351 42.308 0.00 0.00 32.61 2.52
975 1037 3.456277 GAGATGGTGGGAAGGTTATCTGT 59.544 47.826 0.00 0.00 0.00 3.41
979 1041 3.736094 TGAGAGATGGTGGGAAGGTTAT 58.264 45.455 0.00 0.00 0.00 1.89
982 1044 1.842562 CATGAGAGATGGTGGGAAGGT 59.157 52.381 0.00 0.00 0.00 3.50
983 1045 1.476471 GCATGAGAGATGGTGGGAAGG 60.476 57.143 0.00 0.00 0.00 3.46
985 1047 0.548031 GGCATGAGAGATGGTGGGAA 59.452 55.000 0.00 0.00 0.00 3.97
986 1048 1.689243 CGGCATGAGAGATGGTGGGA 61.689 60.000 0.00 0.00 0.00 4.37
987 1049 1.227764 CGGCATGAGAGATGGTGGG 60.228 63.158 0.00 0.00 0.00 4.61
988 1050 1.890979 GCGGCATGAGAGATGGTGG 60.891 63.158 0.00 0.00 0.00 4.61
989 1051 1.890979 GGCGGCATGAGAGATGGTG 60.891 63.158 3.07 0.00 0.00 4.17
991 1053 2.664185 CGGCGGCATGAGAGATGG 60.664 66.667 10.53 0.00 0.00 3.51
992 1054 1.953138 GTCGGCGGCATGAGAGATG 60.953 63.158 6.63 0.00 0.00 2.90
993 1055 2.081425 GAGTCGGCGGCATGAGAGAT 62.081 60.000 16.23 0.00 0.00 2.75
994 1056 2.755876 AGTCGGCGGCATGAGAGA 60.756 61.111 16.23 0.00 0.00 3.10
995 1057 2.279120 GAGTCGGCGGCATGAGAG 60.279 66.667 16.23 0.00 0.00 3.20
996 1058 4.193334 CGAGTCGGCGGCATGAGA 62.193 66.667 16.23 0.00 0.00 3.27
1005 1067 4.200283 CCAGGAGCTCGAGTCGGC 62.200 72.222 15.13 14.69 0.00 5.54
1007 1069 4.200283 GGCCAGGAGCTCGAGTCG 62.200 72.222 15.13 6.09 43.05 4.18
1009 1071 3.386237 GTGGCCAGGAGCTCGAGT 61.386 66.667 5.11 0.23 43.05 4.18
1010 1072 2.849120 CTTGTGGCCAGGAGCTCGAG 62.849 65.000 5.11 8.45 43.05 4.04
1011 1073 2.922503 TTGTGGCCAGGAGCTCGA 60.923 61.111 5.11 0.00 43.05 4.04
1013 1075 0.676151 CTTCTTGTGGCCAGGAGCTC 60.676 60.000 5.11 4.71 43.05 4.09
1014 1076 1.377994 CTTCTTGTGGCCAGGAGCT 59.622 57.895 5.11 0.00 43.05 4.09
1015 1077 2.338785 GCTTCTTGTGGCCAGGAGC 61.339 63.158 5.11 6.89 42.60 4.70
1016 1078 2.037136 CGCTTCTTGTGGCCAGGAG 61.037 63.158 5.11 7.42 0.00 3.69
1017 1079 2.032528 CGCTTCTTGTGGCCAGGA 59.967 61.111 5.11 1.54 0.00 3.86
1040 1102 1.003233 GAGGGTGCTCTTGGGTGAC 60.003 63.158 0.00 0.00 0.00 3.67
1045 1107 4.785453 GGGCGAGGGTGCTCTTGG 62.785 72.222 0.00 0.00 34.52 3.61
1095 1157 1.202188 GCTAACAATGGCGAGGCTTTC 60.202 52.381 0.00 0.00 0.00 2.62
1096 1158 0.811281 GCTAACAATGGCGAGGCTTT 59.189 50.000 0.00 0.00 0.00 3.51
1097 1159 1.032114 GGCTAACAATGGCGAGGCTT 61.032 55.000 0.00 0.00 33.05 4.35
1099 1161 2.481471 GGGCTAACAATGGCGAGGC 61.481 63.158 0.00 0.00 33.05 4.70
1101 1163 0.815615 GAGGGGCTAACAATGGCGAG 60.816 60.000 0.00 0.00 33.05 5.03
1102 1164 1.223487 GAGGGGCTAACAATGGCGA 59.777 57.895 0.00 0.00 33.05 5.54
1104 1166 1.037579 GTGGAGGGGCTAACAATGGC 61.038 60.000 0.00 0.00 0.00 4.40
1109 1183 0.327924 CACATGTGGAGGGGCTAACA 59.672 55.000 18.51 0.00 0.00 2.41
1178 1252 1.153756 AAAGGGTTGACTGGGGCAG 59.846 57.895 0.00 0.00 37.52 4.85
1236 1310 2.900106 AAGGAGAGCTGCACCACCC 61.900 63.158 1.02 0.00 0.00 4.61
1245 1319 1.066286 GCTGTCATGACAAGGAGAGCT 60.066 52.381 27.63 0.00 46.65 4.09
1327 1401 3.044059 GCTGCAGTTGCCCGCTTAG 62.044 63.158 16.64 0.00 41.18 2.18
1417 1500 5.902613 ATGATTGGTCATGTGTTAAGGTG 57.097 39.130 0.00 0.00 43.35 4.00
1645 1728 0.545309 TAAGGAGGTCAGTGGCAGCT 60.545 55.000 0.00 0.00 0.00 4.24
1646 1729 0.543749 ATAAGGAGGTCAGTGGCAGC 59.456 55.000 0.00 0.00 0.00 5.25
1681 1766 5.121768 AGCCGTTTCAGTCAATGTGTATTAC 59.878 40.000 0.00 0.00 0.00 1.89
1706 1796 5.520649 GGATAAACTCGAGATCTGAAACCAC 59.479 44.000 21.68 0.00 0.00 4.16
1748 1838 7.609918 TCACAGTAGCCAAGCAGATTTATAAAA 59.390 33.333 1.21 0.00 0.00 1.52
1751 1841 6.233905 TCACAGTAGCCAAGCAGATTTATA 57.766 37.500 0.00 0.00 0.00 0.98
1754 1844 3.423539 TCACAGTAGCCAAGCAGATTT 57.576 42.857 0.00 0.00 0.00 2.17
1820 1910 2.593026 TGCTCGAAAAGGGTTCCATTT 58.407 42.857 0.00 0.00 0.00 2.32
1826 1916 1.351017 TGGAGATGCTCGAAAAGGGTT 59.649 47.619 0.00 0.00 0.00 4.11
1901 1999 4.533815 AGACGTGTCTGGACATTATAGGA 58.466 43.478 6.71 0.00 43.97 2.94
1906 2004 3.319689 TGTTGAGACGTGTCTGGACATTA 59.680 43.478 14.38 0.00 43.97 1.90
1912 2010 3.559655 TGAAATTGTTGAGACGTGTCTGG 59.440 43.478 14.38 0.00 40.61 3.86
1915 2013 4.795970 ACTGAAATTGTTGAGACGTGTC 57.204 40.909 5.61 5.61 0.00 3.67
1941 2039 7.853524 ACTGCAACACAATCAAAAACATTATG 58.146 30.769 0.00 0.00 0.00 1.90
1997 2095 4.404640 TCCCCATCGATATTCTAAGTCGT 58.595 43.478 0.00 0.00 36.77 4.34
2027 2125 1.592064 TGTGCATTTGCTCGAGACAA 58.408 45.000 18.75 16.64 42.66 3.18
2079 2177 2.906389 TGAGGTGGATAGTTGTTGAGCT 59.094 45.455 0.00 0.00 0.00 4.09
2174 2275 2.283101 TCCAACATGGTGCAGCCC 60.283 61.111 14.36 0.00 39.03 5.19
2176 2277 1.286880 GTGTCCAACATGGTGCAGC 59.713 57.895 9.47 9.47 39.03 5.25
2572 3471 6.778542 TCCATGATCATAACAGGGGAAATA 57.221 37.500 8.15 0.00 39.30 1.40
2574 3473 5.668135 ATCCATGATCATAACAGGGGAAA 57.332 39.130 8.15 0.00 39.30 3.13
2576 3475 4.915809 AGAATCCATGATCATAACAGGGGA 59.084 41.667 8.15 10.12 39.30 4.81
2585 3490 5.424252 AGCAAACCAAAGAATCCATGATCAT 59.576 36.000 1.18 1.18 0.00 2.45
2637 3542 1.334419 CGTTCAAGCTCAAAGCCACAG 60.334 52.381 0.00 0.00 43.77 3.66
2757 3670 7.201652 GCTGGATTTGATCTTGTACCTAAGAAC 60.202 40.741 0.24 0.00 39.87 3.01
2766 3679 4.410228 AGCCTAGCTGGATTTGATCTTGTA 59.590 41.667 0.00 0.00 37.57 2.41
2767 3680 3.201708 AGCCTAGCTGGATTTGATCTTGT 59.798 43.478 0.00 0.00 37.57 3.16
2768 3681 3.818180 AGCCTAGCTGGATTTGATCTTG 58.182 45.455 0.00 0.00 37.57 3.02
2769 3682 4.516652 AAGCCTAGCTGGATTTGATCTT 57.483 40.909 0.00 0.00 42.62 2.40
2777 3690 2.315443 AGCCAAAGCCTAGCTGGAT 58.685 52.632 0.00 0.00 39.62 3.41
2778 3691 3.826282 AGCCAAAGCCTAGCTGGA 58.174 55.556 0.00 0.00 39.62 3.86
2781 3694 0.401738 TTCACAGCCAAAGCCTAGCT 59.598 50.000 0.00 0.00 42.56 3.32
2782 3695 1.200948 CTTTCACAGCCAAAGCCTAGC 59.799 52.381 0.00 0.00 41.25 3.42
2783 3696 2.508526 ACTTTCACAGCCAAAGCCTAG 58.491 47.619 0.00 0.00 41.25 3.02
2784 3697 2.656947 ACTTTCACAGCCAAAGCCTA 57.343 45.000 0.00 0.00 41.25 3.93
2785 3698 1.780503 AACTTTCACAGCCAAAGCCT 58.219 45.000 0.00 0.00 41.25 4.58
2786 3699 3.726291 TTAACTTTCACAGCCAAAGCC 57.274 42.857 0.00 0.00 41.25 4.35
2787 3700 5.107875 CGATTTTAACTTTCACAGCCAAAGC 60.108 40.000 0.00 0.00 34.67 3.51
2788 3701 5.977129 ACGATTTTAACTTTCACAGCCAAAG 59.023 36.000 0.00 0.00 36.97 2.77
2789 3702 5.897050 ACGATTTTAACTTTCACAGCCAAA 58.103 33.333 0.00 0.00 0.00 3.28
2790 3703 5.506649 GGACGATTTTAACTTTCACAGCCAA 60.507 40.000 0.00 0.00 0.00 4.52
2791 3704 4.023536 GGACGATTTTAACTTTCACAGCCA 60.024 41.667 0.00 0.00 0.00 4.75
2792 3705 4.023536 TGGACGATTTTAACTTTCACAGCC 60.024 41.667 0.00 0.00 0.00 4.85
2793 3706 5.103290 TGGACGATTTTAACTTTCACAGC 57.897 39.130 0.00 0.00 0.00 4.40
2794 3707 9.672086 TTTATTGGACGATTTTAACTTTCACAG 57.328 29.630 0.00 0.00 0.00 3.66
2806 3719 9.594478 GGATGGTTTTAATTTATTGGACGATTT 57.406 29.630 0.00 0.00 0.00 2.17
2807 3720 8.201464 GGGATGGTTTTAATTTATTGGACGATT 58.799 33.333 0.00 0.00 0.00 3.34
2808 3721 7.343316 TGGGATGGTTTTAATTTATTGGACGAT 59.657 33.333 0.00 0.00 0.00 3.73
2809 3722 6.663953 TGGGATGGTTTTAATTTATTGGACGA 59.336 34.615 0.00 0.00 0.00 4.20
2810 3723 6.868622 TGGGATGGTTTTAATTTATTGGACG 58.131 36.000 0.00 0.00 0.00 4.79
2811 3724 9.508642 TTTTGGGATGGTTTTAATTTATTGGAC 57.491 29.630 0.00 0.00 0.00 4.02
2836 3749 8.538409 AAATTGCTTATTTCGCTGAGATTTTT 57.462 26.923 0.00 0.00 30.55 1.94
2837 3750 8.177980 GAAATTGCTTATTTCGCTGAGATTTT 57.822 30.769 8.44 0.00 41.86 1.82
2838 3751 7.746526 GAAATTGCTTATTTCGCTGAGATTT 57.253 32.000 8.44 0.00 41.86 2.17
2849 3762 6.052405 TGCCCAATCTGAAATTGCTTATTT 57.948 33.333 0.00 0.00 39.15 1.40
2850 3763 5.188359 ACTGCCCAATCTGAAATTGCTTATT 59.812 36.000 0.00 0.00 0.00 1.40
2851 3764 4.713321 ACTGCCCAATCTGAAATTGCTTAT 59.287 37.500 0.00 0.00 0.00 1.73
2852 3765 4.082081 CACTGCCCAATCTGAAATTGCTTA 60.082 41.667 0.00 0.00 0.00 3.09
2853 3766 2.901839 ACTGCCCAATCTGAAATTGCTT 59.098 40.909 0.00 0.00 0.00 3.91
2854 3767 2.232941 CACTGCCCAATCTGAAATTGCT 59.767 45.455 0.00 0.00 0.00 3.91
2862 3775 1.602311 GCCTATCACTGCCCAATCTG 58.398 55.000 0.00 0.00 0.00 2.90
2863 3776 0.107456 CGCCTATCACTGCCCAATCT 59.893 55.000 0.00 0.00 0.00 2.40
2864 3777 1.510480 GCGCCTATCACTGCCCAATC 61.510 60.000 0.00 0.00 0.00 2.67
2865 3778 1.526917 GCGCCTATCACTGCCCAAT 60.527 57.895 0.00 0.00 0.00 3.16
2866 3779 2.124736 GCGCCTATCACTGCCCAA 60.125 61.111 0.00 0.00 0.00 4.12
2986 3907 1.479368 GGCAATGGGGCTTTGTGGAA 61.479 55.000 0.00 0.00 39.42 3.53
3078 3999 4.884257 GGCGACCGATGGCGCTTA 62.884 66.667 12.95 0.00 43.61 3.09
3135 4082 2.207229 GGGGGCGGAGTTTTTGCTT 61.207 57.895 0.00 0.00 0.00 3.91
3153 4100 0.811616 GAGGGAAGCTGCATACCACG 60.812 60.000 9.09 0.00 0.00 4.94
3158 4105 3.634202 AGCGAGGGAAGCTGCATA 58.366 55.556 1.02 0.00 44.22 3.14
3282 4230 4.492570 CGGCGACACAGATATGTTTTCTTC 60.493 45.833 0.00 0.00 31.24 2.87
3331 4279 4.751767 AGTTTCAATTTGCTGGAACCAA 57.248 36.364 0.00 0.00 35.67 3.67
3412 4368 4.077108 TCTCAGAGTTTTGCTACTACCGA 58.923 43.478 0.00 0.00 0.00 4.69
3435 4392 3.976169 GCACTTCAATTTGCTGTAACCA 58.024 40.909 0.00 0.00 35.74 3.67
3448 4405 2.340210 TGCTACAACCAGCACTTCAA 57.660 45.000 0.00 0.00 46.41 2.69
3455 4412 2.040544 ACGCCATGCTACAACCAGC 61.041 57.895 0.00 0.00 42.15 4.85
3456 4413 0.673333 TCACGCCATGCTACAACCAG 60.673 55.000 0.00 0.00 0.00 4.00
3457 4414 0.953471 GTCACGCCATGCTACAACCA 60.953 55.000 0.00 0.00 0.00 3.67
3458 4415 0.953471 TGTCACGCCATGCTACAACC 60.953 55.000 0.00 0.00 0.00 3.77
3459 4416 0.443869 CTGTCACGCCATGCTACAAC 59.556 55.000 0.00 0.00 0.00 3.32
3460 4417 1.298157 GCTGTCACGCCATGCTACAA 61.298 55.000 0.00 0.00 0.00 2.41
3461 4418 1.741401 GCTGTCACGCCATGCTACA 60.741 57.895 0.00 0.00 0.00 2.74
3462 4419 1.091771 ATGCTGTCACGCCATGCTAC 61.092 55.000 0.00 0.00 0.00 3.58
3463 4420 0.392863 AATGCTGTCACGCCATGCTA 60.393 50.000 0.00 0.00 0.00 3.49
3464 4421 1.676635 AATGCTGTCACGCCATGCT 60.677 52.632 0.00 0.00 0.00 3.79
3465 4422 1.515519 CAATGCTGTCACGCCATGC 60.516 57.895 0.00 0.00 0.00 4.06
3466 4423 1.063027 CTACAATGCTGTCACGCCATG 59.937 52.381 0.00 0.00 36.96 3.66
3467 4424 1.372582 CTACAATGCTGTCACGCCAT 58.627 50.000 0.00 0.00 36.96 4.40
3468 4425 1.298157 GCTACAATGCTGTCACGCCA 61.298 55.000 0.00 0.00 36.96 5.69
3469 4426 1.298157 TGCTACAATGCTGTCACGCC 61.298 55.000 0.00 0.00 36.96 5.68
3470 4427 0.516877 TTGCTACAATGCTGTCACGC 59.483 50.000 0.00 0.00 36.96 5.34
3471 4428 2.967459 TTTGCTACAATGCTGTCACG 57.033 45.000 0.00 0.00 36.96 4.35
3489 4446 1.892209 AGTCAGCGTCGGGAATTTTT 58.108 45.000 0.00 0.00 0.00 1.94
3490 4447 2.754946 TAGTCAGCGTCGGGAATTTT 57.245 45.000 0.00 0.00 0.00 1.82
3491 4448 2.550978 CATAGTCAGCGTCGGGAATTT 58.449 47.619 0.00 0.00 0.00 1.82
3492 4449 1.202533 CCATAGTCAGCGTCGGGAATT 60.203 52.381 0.00 0.00 0.00 2.17
3493 4450 0.389391 CCATAGTCAGCGTCGGGAAT 59.611 55.000 0.00 0.00 0.00 3.01
3494 4451 1.813859 CCATAGTCAGCGTCGGGAA 59.186 57.895 0.00 0.00 0.00 3.97
3495 4452 2.782222 GCCATAGTCAGCGTCGGGA 61.782 63.158 0.00 0.00 0.00 5.14
3496 4453 2.279517 GCCATAGTCAGCGTCGGG 60.280 66.667 0.00 0.00 0.00 5.14
3497 4454 0.739462 TTTGCCATAGTCAGCGTCGG 60.739 55.000 0.00 0.00 0.00 4.79
3498 4455 0.647410 CTTTGCCATAGTCAGCGTCG 59.353 55.000 0.00 0.00 0.00 5.12
3499 4456 0.375106 GCTTTGCCATAGTCAGCGTC 59.625 55.000 0.00 0.00 0.00 5.19
3500 4457 2.471255 GCTTTGCCATAGTCAGCGT 58.529 52.632 0.00 0.00 0.00 5.07
3511 4468 0.038343 TCTCATTTTGCGGCTTTGCC 60.038 50.000 0.00 0.00 46.75 4.52
3512 4469 1.063031 GTCTCATTTTGCGGCTTTGC 58.937 50.000 0.00 0.00 0.00 3.68
3513 4470 2.053627 GTGTCTCATTTTGCGGCTTTG 58.946 47.619 0.00 0.00 0.00 2.77
3514 4471 1.000274 GGTGTCTCATTTTGCGGCTTT 60.000 47.619 0.00 0.00 0.00 3.51
3515 4472 0.598065 GGTGTCTCATTTTGCGGCTT 59.402 50.000 0.00 0.00 0.00 4.35
3516 4473 0.250901 AGGTGTCTCATTTTGCGGCT 60.251 50.000 0.00 0.00 0.00 5.52
3517 4474 0.109597 CAGGTGTCTCATTTTGCGGC 60.110 55.000 0.00 0.00 0.00 6.53
3518 4475 1.238439 ACAGGTGTCTCATTTTGCGG 58.762 50.000 0.00 0.00 0.00 5.69
3519 4476 2.033299 ACAACAGGTGTCTCATTTTGCG 59.967 45.455 0.00 0.00 34.38 4.85
3520 4477 3.715628 ACAACAGGTGTCTCATTTTGC 57.284 42.857 0.00 0.00 34.38 3.68
3521 4478 4.275689 TGCTACAACAGGTGTCTCATTTTG 59.724 41.667 0.00 0.00 41.98 2.44
3522 4479 4.460263 TGCTACAACAGGTGTCTCATTTT 58.540 39.130 0.00 0.00 41.98 1.82
3523 4480 4.085357 TGCTACAACAGGTGTCTCATTT 57.915 40.909 0.00 0.00 41.98 2.32
3524 4481 3.769739 TGCTACAACAGGTGTCTCATT 57.230 42.857 0.00 0.00 41.98 2.57
3525 4482 3.769739 TTGCTACAACAGGTGTCTCAT 57.230 42.857 0.00 0.00 41.98 2.90
3526 4483 3.552132 TTTGCTACAACAGGTGTCTCA 57.448 42.857 0.00 0.00 41.98 3.27
3527 4484 4.893424 TTTTTGCTACAACAGGTGTCTC 57.107 40.909 0.00 0.00 41.98 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.