Multiple sequence alignment - TraesCS2A01G088400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G088400 chr2A 100.000 6780 0 0 1 6780 41761397 41754618 0.000000e+00 12521.0
1 TraesCS2A01G088400 chr2A 94.575 1272 55 6 4557 5824 41993369 41994630 0.000000e+00 1954.0
2 TraesCS2A01G088400 chr2A 91.640 634 40 4 884 1508 41992445 41993074 0.000000e+00 865.0
3 TraesCS2A01G088400 chr2A 83.117 924 131 16 4572 5485 758469821 758468913 0.000000e+00 819.0
4 TraesCS2A01G088400 chr2A 95.037 403 20 0 5380 5782 41745320 41744918 9.590000e-178 634.0
5 TraesCS2A01G088400 chr2A 85.352 512 72 2 1000 1508 758449707 758449196 1.670000e-145 527.0
6 TraesCS2A01G088400 chr2A 89.227 362 17 6 3959 4299 17496550 17496190 3.760000e-117 433.0
7 TraesCS2A01G088400 chr2A 87.454 271 30 3 4298 4565 41993066 41993335 6.600000e-80 309.0
8 TraesCS2A01G088400 chr2A 88.496 113 7 3 5785 5891 41745738 41745626 1.530000e-26 132.0
9 TraesCS2A01G088400 chr2A 89.873 79 6 2 6041 6117 424523345 424523267 4.330000e-17 100.0
10 TraesCS2A01G088400 chr4B 99.247 2789 18 3 1508 4295 660880828 660883614 0.000000e+00 5031.0
11 TraesCS2A01G088400 chr4B 92.857 70 3 2 6050 6117 522673102 522673171 4.330000e-17 100.0
12 TraesCS2A01G088400 chr7A 98.783 2793 20 4 1508 4297 692048586 692045805 0.000000e+00 4957.0
13 TraesCS2A01G088400 chr7A 96.382 1382 41 4 2387 3761 91011662 91013041 0.000000e+00 2266.0
14 TraesCS2A01G088400 chr7A 96.310 1382 42 4 2387 3761 718437799 718439178 0.000000e+00 2261.0
15 TraesCS2A01G088400 chr7A 97.413 889 21 2 1508 2395 718436742 718437629 0.000000e+00 1513.0
16 TraesCS2A01G088400 chr7A 92.696 575 25 7 3727 4298 91013052 91013612 0.000000e+00 813.0
17 TraesCS2A01G088400 chr7A 92.683 574 26 6 3727 4297 186400473 186401033 0.000000e+00 813.0
18 TraesCS2A01G088400 chr7A 92.215 578 29 6 3727 4302 48001158 48000595 0.000000e+00 804.0
19 TraesCS2A01G088400 chr7A 93.931 346 17 4 3955 4298 663799665 663799322 2.800000e-143 520.0
20 TraesCS2A01G088400 chr7A 92.000 175 9 5 602 773 189307923 189307751 2.440000e-59 241.0
21 TraesCS2A01G088400 chr3A 98.608 2802 27 2 1508 4297 720986020 720983219 0.000000e+00 4948.0
22 TraesCS2A01G088400 chr3A 99.114 1805 16 0 1508 3312 721022939 721021135 0.000000e+00 3245.0
23 TraesCS2A01G088400 chr3A 87.500 48 5 1 6297 6343 117293162 117293209 3.000000e-03 54.7
24 TraesCS2A01G088400 chrUn 98.604 2794 24 5 1506 4297 48293507 48296287 0.000000e+00 4929.0
25 TraesCS2A01G088400 chrUn 99.004 1706 16 1 2594 4298 271468144 271466439 0.000000e+00 3055.0
26 TraesCS2A01G088400 chrUn 98.730 945 11 1 3314 4257 457993587 457992643 0.000000e+00 1677.0
27 TraesCS2A01G088400 chrUn 89.985 659 60 3 4572 5224 17299182 17298524 0.000000e+00 846.0
28 TraesCS2A01G088400 chrUn 85.081 496 68 5 1000 1489 17299866 17299371 1.020000e-137 501.0
29 TraesCS2A01G088400 chrUn 91.401 314 27 0 5298 5611 17298533 17298220 1.350000e-116 431.0
30 TraesCS2A01G088400 chrUn 89.091 165 18 0 5616 5780 17298067 17297903 8.910000e-49 206.0
31 TraesCS2A01G088400 chr3B 98.520 2432 23 3 1507 3937 754876836 754874417 0.000000e+00 4279.0
32 TraesCS2A01G088400 chr3B 94.030 335 16 4 3966 4297 800653083 800653416 7.850000e-139 505.0
33 TraesCS2A01G088400 chr3B 89.916 119 12 0 305 423 425207375 425207257 3.270000e-33 154.0
34 TraesCS2A01G088400 chr5A 96.527 1382 39 4 2387 3761 565688857 565690236 0.000000e+00 2278.0
35 TraesCS2A01G088400 chr5A 96.231 902 22 2 1506 2395 565687785 565688686 0.000000e+00 1467.0
36 TraesCS2A01G088400 chr5A 94.286 70 2 2 6050 6117 629924966 629925035 9.300000e-19 106.0
37 TraesCS2A01G088400 chr5A 84.536 97 11 1 6048 6144 694880892 694880984 7.240000e-15 93.5
38 TraesCS2A01G088400 chr2D 93.077 1430 72 12 4557 5977 37208866 37210277 0.000000e+00 2067.0
39 TraesCS2A01G088400 chr2D 94.742 951 26 9 4298 5224 37055358 37054408 0.000000e+00 1458.0
40 TraesCS2A01G088400 chr2D 96.186 708 27 0 5298 6005 37054417 37053710 0.000000e+00 1158.0
41 TraesCS2A01G088400 chr2D 96.257 668 25 0 4557 5224 37073696 37073029 0.000000e+00 1096.0
42 TraesCS2A01G088400 chr2D 93.429 700 31 9 5298 5983 37073038 37072340 0.000000e+00 1024.0
43 TraesCS2A01G088400 chr2D 92.788 721 28 6 812 1508 37056070 37055350 0.000000e+00 1022.0
44 TraesCS2A01G088400 chr2D 93.469 689 20 4 841 1508 37074666 37073982 0.000000e+00 1000.0
45 TraesCS2A01G088400 chr2D 91.442 631 47 5 884 1508 37207948 37208577 0.000000e+00 859.0
46 TraesCS2A01G088400 chr2D 96.887 257 8 0 4298 4554 37073990 37073734 1.350000e-116 431.0
47 TraesCS2A01G088400 chr2D 90.728 302 25 2 7 307 37056879 37056580 3.810000e-107 399.0
48 TraesCS2A01G088400 chr2D 89.354 263 26 2 2 263 37118275 37118014 5.070000e-86 329.0
49 TraesCS2A01G088400 chr2D 92.727 220 11 3 4298 4516 37208569 37208784 5.110000e-81 313.0
50 TraesCS2A01G088400 chr2D 90.050 201 14 4 593 787 14087380 14087580 8.730000e-64 255.0
51 TraesCS2A01G088400 chr2D 85.496 131 14 3 414 542 37056576 37056449 1.530000e-26 132.0
52 TraesCS2A01G088400 chr2D 86.598 97 9 1 6048 6144 435831919 435832011 3.340000e-18 104.0
53 TraesCS2A01G088400 chr2D 81.884 138 10 4 410 543 37088097 37087971 1.200000e-17 102.0
54 TraesCS2A01G088400 chr2D 80.000 130 10 5 410 536 37074863 37074747 1.570000e-11 82.4
55 TraesCS2A01G088400 chr2B 92.901 1310 66 12 4557 5857 64856887 64858178 0.000000e+00 1879.0
56 TraesCS2A01G088400 chr2B 93.082 954 37 13 4298 5224 64778113 64777162 0.000000e+00 1369.0
57 TraesCS2A01G088400 chr2B 94.474 760 37 2 5298 6052 64777171 64776412 0.000000e+00 1166.0
58 TraesCS2A01G088400 chr2B 94.034 704 33 8 812 1508 64778806 64778105 0.000000e+00 1059.0
59 TraesCS2A01G088400 chr2B 91.879 628 46 4 884 1508 64855974 64856599 0.000000e+00 872.0
60 TraesCS2A01G088400 chr2B 89.828 639 55 5 6136 6769 64776414 64775781 0.000000e+00 811.0
61 TraesCS2A01G088400 chr2B 88.688 663 69 3 4572 5228 770766834 770766172 0.000000e+00 804.0
62 TraesCS2A01G088400 chr2B 85.547 512 71 2 1000 1508 770767515 770767004 3.600000e-147 532.0
63 TraesCS2A01G088400 chr2B 90.127 314 31 0 5298 5611 770766095 770765782 6.330000e-110 409.0
64 TraesCS2A01G088400 chr2B 91.855 221 11 5 4298 4516 64856591 64856806 1.110000e-77 302.0
65 TraesCS2A01G088400 chr2B 90.500 200 12 5 593 785 206286980 206287179 2.430000e-64 257.0
66 TraesCS2A01G088400 chr2B 87.864 206 17 3 5691 5893 64773140 64772940 1.140000e-57 235.0
67 TraesCS2A01G088400 chr2B 93.333 120 5 2 293 412 715014866 715014982 2.510000e-39 174.0
68 TraesCS2A01G088400 chr2B 86.777 121 15 1 306 426 591515394 591515275 4.270000e-27 134.0
69 TraesCS2A01G088400 chr2B 93.056 72 3 2 6048 6117 88485991 88486062 3.340000e-18 104.0
70 TraesCS2A01G088400 chr2B 87.500 88 9 2 6050 6137 821371 821286 4.330000e-17 100.0
71 TraesCS2A01G088400 chr7B 97.843 881 19 0 1509 2389 714304554 714303674 0.000000e+00 1522.0
72 TraesCS2A01G088400 chr7B 96.429 112 3 1 306 417 75023844 75023954 4.180000e-42 183.0
73 TraesCS2A01G088400 chr7B 94.828 116 5 1 305 420 548384354 548384240 5.400000e-41 180.0
74 TraesCS2A01G088400 chr7B 92.562 121 9 0 302 422 483809307 483809187 2.510000e-39 174.0
75 TraesCS2A01G088400 chr7B 93.151 73 3 2 6047 6117 313087064 313086992 9.300000e-19 106.0
76 TraesCS2A01G088400 chr6D 90.000 200 15 5 593 787 426200911 426200712 3.140000e-63 254.0
77 TraesCS2A01G088400 chr6B 89.950 199 13 6 593 785 657062203 657062006 4.060000e-62 250.0
78 TraesCS2A01G088400 chr7D 90.761 184 11 5 593 773 363668490 363668310 2.440000e-59 241.0
79 TraesCS2A01G088400 chr7D 89.916 119 10 2 306 423 201981209 201981092 1.180000e-32 152.0
80 TraesCS2A01G088400 chr4D 90.761 184 12 5 593 773 91232322 91232503 2.440000e-59 241.0
81 TraesCS2A01G088400 chr4D 86.598 97 9 1 6048 6144 420783295 420783387 3.340000e-18 104.0
82 TraesCS2A01G088400 chr1A 86.344 227 22 6 550 773 553987232 553987012 8.790000e-59 239.0
83 TraesCS2A01G088400 chr5B 88.500 200 16 6 593 786 655801285 655801483 1.140000e-57 235.0
84 TraesCS2A01G088400 chr5B 89.781 137 9 4 292 426 294240022 294240155 3.250000e-38 171.0
85 TraesCS2A01G088400 chr5B 89.764 127 12 1 299 424 519183431 519183557 1.960000e-35 161.0
86 TraesCS2A01G088400 chr5B 90.833 120 11 0 305 424 685440796 685440677 1.960000e-35 161.0
87 TraesCS2A01G088400 chr1D 94.167 120 5 2 306 423 464736336 464736217 1.500000e-41 182.0
88 TraesCS2A01G088400 chr5D 94.828 116 5 1 298 412 544700500 544700385 5.400000e-41 180.0
89 TraesCS2A01G088400 chr6A 92.063 126 9 1 294 419 436115588 436115464 6.990000e-40 176.0
90 TraesCS2A01G088400 chr4A 92.562 121 8 1 306 425 548344180 548344060 9.040000e-39 172.0
91 TraesCS2A01G088400 chr1B 91.935 124 8 2 300 423 612936621 612936500 9.040000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G088400 chr2A 41754618 41761397 6779 True 12521.000000 12521 100.000000 1 6780 1 chr2A.!!$R2 6779
1 TraesCS2A01G088400 chr2A 41992445 41994630 2185 False 1042.666667 1954 91.223000 884 5824 3 chr2A.!!$F1 4940
2 TraesCS2A01G088400 chr2A 758468913 758469821 908 True 819.000000 819 83.117000 4572 5485 1 chr2A.!!$R5 913
3 TraesCS2A01G088400 chr2A 758449196 758449707 511 True 527.000000 527 85.352000 1000 1508 1 chr2A.!!$R4 508
4 TraesCS2A01G088400 chr2A 41744918 41745738 820 True 383.000000 634 91.766500 5380 5891 2 chr2A.!!$R6 511
5 TraesCS2A01G088400 chr4B 660880828 660883614 2786 False 5031.000000 5031 99.247000 1508 4295 1 chr4B.!!$F2 2787
6 TraesCS2A01G088400 chr7A 692045805 692048586 2781 True 4957.000000 4957 98.783000 1508 4297 1 chr7A.!!$R4 2789
7 TraesCS2A01G088400 chr7A 718436742 718439178 2436 False 1887.000000 2261 96.861500 1508 3761 2 chr7A.!!$F3 2253
8 TraesCS2A01G088400 chr7A 91011662 91013612 1950 False 1539.500000 2266 94.539000 2387 4298 2 chr7A.!!$F2 1911
9 TraesCS2A01G088400 chr7A 186400473 186401033 560 False 813.000000 813 92.683000 3727 4297 1 chr7A.!!$F1 570
10 TraesCS2A01G088400 chr7A 48000595 48001158 563 True 804.000000 804 92.215000 3727 4302 1 chr7A.!!$R1 575
11 TraesCS2A01G088400 chr3A 720983219 720986020 2801 True 4948.000000 4948 98.608000 1508 4297 1 chr3A.!!$R1 2789
12 TraesCS2A01G088400 chr3A 721021135 721022939 1804 True 3245.000000 3245 99.114000 1508 3312 1 chr3A.!!$R2 1804
13 TraesCS2A01G088400 chrUn 48293507 48296287 2780 False 4929.000000 4929 98.604000 1506 4297 1 chrUn.!!$F1 2791
14 TraesCS2A01G088400 chrUn 271466439 271468144 1705 True 3055.000000 3055 99.004000 2594 4298 1 chrUn.!!$R1 1704
15 TraesCS2A01G088400 chrUn 457992643 457993587 944 True 1677.000000 1677 98.730000 3314 4257 1 chrUn.!!$R2 943
16 TraesCS2A01G088400 chrUn 17297903 17299866 1963 True 496.000000 846 88.889500 1000 5780 4 chrUn.!!$R3 4780
17 TraesCS2A01G088400 chr3B 754874417 754876836 2419 True 4279.000000 4279 98.520000 1507 3937 1 chr3B.!!$R2 2430
18 TraesCS2A01G088400 chr5A 565687785 565690236 2451 False 1872.500000 2278 96.379000 1506 3761 2 chr5A.!!$F3 2255
19 TraesCS2A01G088400 chr2D 37207948 37210277 2329 False 1079.666667 2067 92.415333 884 5977 3 chr2D.!!$F3 5093
20 TraesCS2A01G088400 chr2D 37053710 37056879 3169 True 833.800000 1458 91.988000 7 6005 5 chr2D.!!$R3 5998
21 TraesCS2A01G088400 chr2D 37072340 37074863 2523 True 726.680000 1096 92.008400 410 5983 5 chr2D.!!$R4 5573
22 TraesCS2A01G088400 chr2B 64855974 64858178 2204 False 1017.666667 1879 92.211667 884 5857 3 chr2B.!!$F4 4973
23 TraesCS2A01G088400 chr2B 64772940 64778806 5866 True 928.000000 1369 91.856400 812 6769 5 chr2B.!!$R3 5957
24 TraesCS2A01G088400 chr2B 770765782 770767515 1733 True 581.666667 804 88.120667 1000 5611 3 chr2B.!!$R4 4611
25 TraesCS2A01G088400 chr7B 714303674 714304554 880 True 1522.000000 1522 97.843000 1509 2389 1 chr7B.!!$R4 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 488 0.895559 CACCCTGTCTTGCTTTCCCC 60.896 60.000 0.00 0.00 0.00 4.81 F
808 880 0.935366 CTTCGCCGGATAGACGCTTC 60.935 60.000 5.05 0.00 0.00 3.86 F
1425 1585 0.599558 CCAACTCCAACGACTACGGA 59.400 55.000 0.00 0.00 44.46 4.69 F
1428 1588 1.613836 ACTCCAACGACTACGGAACT 58.386 50.000 0.00 0.00 44.46 3.01 F
2811 3196 1.515736 GCATTTGCGCCTCTTGCTC 60.516 57.895 4.18 0.00 38.05 4.26 F
4302 4756 0.030638 AAATCAAAACGCAGCGTGCT 59.969 45.000 23.78 9.31 42.25 4.40 F
4304 4758 0.165944 ATCAAAACGCAGCGTGCTAC 59.834 50.000 23.78 0.00 42.25 3.58 F
5230 5914 0.249741 GGCTGCGGGTACGTATGATT 60.250 55.000 0.00 0.00 43.45 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1384 1544 1.878069 CGCCGACGATGCAGATCAA 60.878 57.895 0.00 0.00 43.93 2.57 R
1793 1998 4.374689 TGTTGGAGGCCACTTTATAACA 57.625 40.909 5.01 3.60 30.78 2.41 R
2811 3196 1.616159 TGCTCCATCCATGCATGATG 58.384 50.000 28.31 24.47 0.00 3.07 R
3514 3920 4.956075 ACCAAGGAGTCTCACAATGTTTTT 59.044 37.500 1.47 0.00 0.00 1.94 R
4555 5065 0.744874 GCTCATCCTGCATGCATTGT 59.255 50.000 22.97 6.94 31.70 2.71 R
5129 5645 0.035317 TGTCGCCAGTGAGCATCTTT 59.965 50.000 0.00 0.00 34.92 2.52 R
5244 5928 0.249120 TATCAACCCAGCAGGACGTG 59.751 55.000 0.00 0.00 39.89 4.49 R
6682 7547 0.033894 ACCTCGTCTCCTTCCTCTCC 60.034 60.000 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 142 2.440147 CCCATCACCACCTTGCCA 59.560 61.111 0.00 0.00 0.00 4.92
142 144 1.075482 CCATCACCACCTTGCCACT 59.925 57.895 0.00 0.00 0.00 4.00
147 149 3.726517 CCACCTTGCCACTTCGCG 61.727 66.667 0.00 0.00 0.00 5.87
195 197 4.158209 TCCGTCGTGTAACCTCATGATTTA 59.842 41.667 0.00 0.00 36.07 1.40
196 198 4.266976 CCGTCGTGTAACCTCATGATTTAC 59.733 45.833 15.69 15.69 36.07 2.01
239 241 1.000843 GGTGTGGCTTGGTTTCCATTC 59.999 52.381 0.00 0.00 34.47 2.67
310 312 6.704289 AACCAAACAACTTTAAGGTACTCC 57.296 37.500 0.00 0.00 38.49 3.85
311 313 5.135383 ACCAAACAACTTTAAGGTACTCCC 58.865 41.667 0.00 0.00 38.49 4.30
313 315 5.472478 CCAAACAACTTTAAGGTACTCCCTC 59.528 44.000 0.00 0.00 45.47 4.30
314 316 4.904895 ACAACTTTAAGGTACTCCCTCC 57.095 45.455 0.00 0.00 45.47 4.30
316 318 4.850386 ACAACTTTAAGGTACTCCCTCCAT 59.150 41.667 0.00 0.00 45.47 3.41
317 319 5.312443 ACAACTTTAAGGTACTCCCTCCATT 59.688 40.000 0.00 0.00 45.47 3.16
318 320 5.695424 ACTTTAAGGTACTCCCTCCATTC 57.305 43.478 0.00 0.00 45.47 2.67
319 321 4.161754 ACTTTAAGGTACTCCCTCCATTCG 59.838 45.833 0.00 0.00 45.47 3.34
320 322 1.497161 AAGGTACTCCCTCCATTCGG 58.503 55.000 0.00 0.00 45.47 4.30
322 324 1.007963 AGGTACTCCCTCCATTCGGAA 59.992 52.381 0.00 0.00 40.71 4.30
323 325 2.047830 GGTACTCCCTCCATTCGGAAT 58.952 52.381 0.00 0.00 42.21 3.01
325 327 3.644738 GGTACTCCCTCCATTCGGAATTA 59.355 47.826 0.00 0.00 42.21 1.40
326 328 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
327 329 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
328 330 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
329 331 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
330 332 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
331 333 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
332 334 3.555956 CCTCCATTCGGAATTACTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
334 336 5.327616 TCCATTCGGAATTACTTGTCGTA 57.672 39.130 0.00 0.00 38.83 3.43
335 337 5.345702 TCCATTCGGAATTACTTGTCGTAG 58.654 41.667 0.00 0.00 38.83 3.51
336 338 5.125900 TCCATTCGGAATTACTTGTCGTAGA 59.874 40.000 0.00 0.00 38.83 2.59
339 341 7.011109 CCATTCGGAATTACTTGTCGTAGAAAT 59.989 37.037 0.00 0.00 39.69 2.17
340 342 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
341 343 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
342 344 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
343 345 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
344 346 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
346 348 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
347 349 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
348 350 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
349 351 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
350 352 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
351 353 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
352 354 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
354 356 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
355 357 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
356 358 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
387 389 9.606631 AGTTCTAGATACATCCATTTTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
388 390 9.383519 GTTCTAGATACATCCATTTTCAAGACA 57.616 33.333 0.00 0.00 0.00 3.41
390 392 9.958180 TCTAGATACATCCATTTTCAAGACAAA 57.042 29.630 0.00 0.00 0.00 2.83
397 399 9.657419 ACATCCATTTTCAAGACAAATAATTCC 57.343 29.630 0.00 0.00 0.00 3.01
402 404 9.796062 CATTTTCAAGACAAATAATTCCAAACG 57.204 29.630 0.00 0.00 0.00 3.60
403 405 7.938563 TTTCAAGACAAATAATTCCAAACGG 57.061 32.000 0.00 0.00 0.00 4.44
406 408 5.897377 AGACAAATAATTCCAAACGGAGG 57.103 39.130 0.00 0.00 32.88 4.30
407 409 4.705023 AGACAAATAATTCCAAACGGAGGG 59.295 41.667 0.00 0.00 32.88 4.30
408 410 4.668636 ACAAATAATTCCAAACGGAGGGA 58.331 39.130 0.00 0.00 32.88 4.20
412 414 5.703730 ATAATTCCAAACGGAGGGAGTAA 57.296 39.130 0.00 0.00 34.02 2.24
427 429 5.751586 AGGGAGTAAATATTTTGGCTTCGA 58.248 37.500 5.91 0.00 0.00 3.71
429 431 6.486993 AGGGAGTAAATATTTTGGCTTCGATC 59.513 38.462 5.91 0.00 0.00 3.69
437 439 2.981400 TTGGCTTCGATCGGAAAAAC 57.019 45.000 16.41 0.00 33.34 2.43
438 440 1.885560 TGGCTTCGATCGGAAAAACA 58.114 45.000 16.41 4.75 33.34 2.83
442 445 2.225727 GCTTCGATCGGAAAAACAAGGT 59.774 45.455 16.41 0.00 33.34 3.50
454 457 1.444933 AACAAGGTGAGTGATGGGGA 58.555 50.000 0.00 0.00 0.00 4.81
464 467 1.774254 AGTGATGGGGACTTTCACACA 59.226 47.619 5.23 0.00 42.75 3.72
465 468 1.880027 GTGATGGGGACTTTCACACAC 59.120 52.381 0.00 0.00 41.13 3.82
475 478 0.916086 TTTCACACACCACCCTGTCT 59.084 50.000 0.00 0.00 0.00 3.41
476 479 0.916086 TTCACACACCACCCTGTCTT 59.084 50.000 0.00 0.00 0.00 3.01
485 488 0.895559 CACCCTGTCTTGCTTTCCCC 60.896 60.000 0.00 0.00 0.00 4.81
518 521 3.454812 TGGCCAGTAGGATCCTTAAGTTC 59.545 47.826 22.03 7.18 36.89 3.01
558 561 8.854614 TTACTAGTACTACTTTCTCCGTTTCT 57.145 34.615 0.91 0.00 0.00 2.52
559 562 7.757941 ACTAGTACTACTTTCTCCGTTTCTT 57.242 36.000 0.00 0.00 0.00 2.52
560 563 8.175925 ACTAGTACTACTTTCTCCGTTTCTTT 57.824 34.615 0.00 0.00 0.00 2.52
561 564 8.637099 ACTAGTACTACTTTCTCCGTTTCTTTT 58.363 33.333 0.00 0.00 0.00 2.27
562 565 9.473640 CTAGTACTACTTTCTCCGTTTCTTTTT 57.526 33.333 0.00 0.00 0.00 1.94
564 567 9.254133 AGTACTACTTTCTCCGTTTCTTTTTAC 57.746 33.333 0.00 0.00 0.00 2.01
567 570 6.954487 ACTTTCTCCGTTTCTTTTTACCAT 57.046 33.333 0.00 0.00 0.00 3.55
569 572 6.320418 ACTTTCTCCGTTTCTTTTTACCATGT 59.680 34.615 0.00 0.00 0.00 3.21
570 573 7.499895 ACTTTCTCCGTTTCTTTTTACCATGTA 59.500 33.333 0.00 0.00 0.00 2.29
571 574 7.989416 TTCTCCGTTTCTTTTTACCATGTAT 57.011 32.000 0.00 0.00 0.00 2.29
572 575 9.504708 TTTCTCCGTTTCTTTTTACCATGTATA 57.495 29.630 0.00 0.00 0.00 1.47
573 576 9.675464 TTCTCCGTTTCTTTTTACCATGTATAT 57.325 29.630 0.00 0.00 0.00 0.86
598 601 9.685276 ATAAGATTTAATCACAGTCATTGACCA 57.315 29.630 13.14 0.00 32.18 4.02
599 602 7.621428 AGATTTAATCACAGTCATTGACCAG 57.379 36.000 13.14 8.95 32.18 4.00
600 603 5.627499 TTTAATCACAGTCATTGACCAGC 57.373 39.130 13.14 0.00 32.18 4.85
601 604 3.430042 AATCACAGTCATTGACCAGCT 57.570 42.857 13.14 0.00 32.18 4.24
602 605 2.936919 TCACAGTCATTGACCAGCTT 57.063 45.000 13.14 0.00 32.18 3.74
603 606 3.213206 TCACAGTCATTGACCAGCTTT 57.787 42.857 13.14 0.00 32.18 3.51
604 607 2.880268 TCACAGTCATTGACCAGCTTTG 59.120 45.455 13.14 6.56 32.18 2.77
605 608 2.620115 CACAGTCATTGACCAGCTTTGT 59.380 45.455 13.14 7.17 32.18 2.83
607 610 4.067896 ACAGTCATTGACCAGCTTTGTAG 58.932 43.478 13.14 0.00 32.18 2.74
609 612 4.756642 CAGTCATTGACCAGCTTTGTAGAA 59.243 41.667 13.14 0.00 32.18 2.10
611 614 5.827797 AGTCATTGACCAGCTTTGTAGAAAA 59.172 36.000 13.14 0.00 32.18 2.29
675 678 9.941325 AAATTAATTTCATGATGCACCTAACAA 57.059 25.926 7.64 0.00 0.00 2.83
680 683 9.537192 AATTTCATGATGCACCTAACAATATTG 57.463 29.630 14.01 14.01 0.00 1.90
681 684 7.878547 TTCATGATGCACCTAACAATATTGA 57.121 32.000 22.16 0.00 0.00 2.57
682 685 8.467963 TTCATGATGCACCTAACAATATTGAT 57.532 30.769 22.16 12.82 0.00 2.57
683 686 8.467963 TCATGATGCACCTAACAATATTGATT 57.532 30.769 22.16 13.80 0.00 2.57
684 687 8.916062 TCATGATGCACCTAACAATATTGATTT 58.084 29.630 22.16 9.25 0.00 2.17
685 688 9.188588 CATGATGCACCTAACAATATTGATTTC 57.811 33.333 22.16 6.10 0.00 2.17
686 689 8.291191 TGATGCACCTAACAATATTGATTTCA 57.709 30.769 22.16 9.83 0.00 2.69
687 690 8.916062 TGATGCACCTAACAATATTGATTTCAT 58.084 29.630 22.16 13.45 0.00 2.57
800 872 2.821969 GGAGTATAACCTTCGCCGGATA 59.178 50.000 5.05 0.00 0.00 2.59
806 878 2.722487 CTTCGCCGGATAGACGCT 59.278 61.111 5.05 0.00 0.00 5.07
808 880 0.935366 CTTCGCCGGATAGACGCTTC 60.935 60.000 5.05 0.00 0.00 3.86
809 881 2.657484 TTCGCCGGATAGACGCTTCG 62.657 60.000 5.05 0.00 0.00 3.79
810 882 2.412112 GCCGGATAGACGCTTCGT 59.588 61.111 5.05 0.00 45.10 3.85
831 943 4.201589 CGTCGTATTGCACAAGGAAAGTAG 60.202 45.833 0.00 0.00 0.00 2.57
865 977 1.533469 CCCAGTCGGAGTCGGTTTCT 61.533 60.000 0.00 0.00 36.95 2.52
898 1030 4.437239 AGCAATACGTCCTTGATTCTCTG 58.563 43.478 13.34 0.00 0.00 3.35
964 1113 1.941325 ACCAATCTTTCCTCGATCGC 58.059 50.000 11.09 0.00 0.00 4.58
1384 1544 0.971447 GTACAGCGAGAACCTCCCCT 60.971 60.000 0.00 0.00 0.00 4.79
1425 1585 0.599558 CCAACTCCAACGACTACGGA 59.400 55.000 0.00 0.00 44.46 4.69
1428 1588 1.613836 ACTCCAACGACTACGGAACT 58.386 50.000 0.00 0.00 44.46 3.01
1631 1792 9.310716 TCAAAATCAAAATTTGAAAATTTGGCC 57.689 25.926 26.17 0.00 45.16 5.36
1632 1793 9.095065 CAAAATCAAAATTTGAAAATTTGGCCA 57.905 25.926 22.85 0.00 45.16 5.36
1633 1794 9.662947 AAAATCAAAATTTGAAAATTTGGCCAA 57.337 22.222 16.05 16.05 45.16 4.52
1634 1795 9.662947 AAATCAAAATTTGAAAATTTGGCCAAA 57.337 22.222 32.12 32.12 45.16 3.28
1793 1998 3.894427 TCCAACATAACAGGCACACATTT 59.106 39.130 0.00 0.00 0.00 2.32
2130 2335 2.543777 TGGACTAACAGGACAAGTGC 57.456 50.000 0.00 0.00 32.76 4.40
2811 3196 1.515736 GCATTTGCGCCTCTTGCTC 60.516 57.895 4.18 0.00 38.05 4.26
3227 3613 9.689976 CACAACACAACTGAATTATTATTGGAA 57.310 29.630 0.00 0.00 0.00 3.53
3514 3920 9.508642 TGTGTGTTTCAGATTATATACCAAACA 57.491 29.630 0.00 0.00 31.55 2.83
3655 4062 1.223487 GCCGAGCCATTTACCAGGA 59.777 57.895 0.00 0.00 0.00 3.86
3790 4241 6.815089 TGCATCAAGAACATTTGTACCTTTT 58.185 32.000 0.00 0.00 0.00 2.27
3791 4242 7.271511 TGCATCAAGAACATTTGTACCTTTTT 58.728 30.769 0.00 0.00 0.00 1.94
4298 4752 0.702383 CCGAAAATCAAAACGCAGCG 59.298 50.000 14.82 14.82 0.00 5.18
4302 4756 0.030638 AAATCAAAACGCAGCGTGCT 59.969 45.000 23.78 9.31 42.25 4.40
4303 4757 0.871722 AATCAAAACGCAGCGTGCTA 59.128 45.000 23.78 8.13 42.25 3.49
4304 4758 0.165944 ATCAAAACGCAGCGTGCTAC 59.834 50.000 23.78 0.00 42.25 3.58
4305 4759 1.440353 CAAAACGCAGCGTGCTACC 60.440 57.895 23.78 0.00 42.25 3.18
4321 4775 2.149803 TACCAGGCCGTCGTCAACAG 62.150 60.000 0.00 0.00 0.00 3.16
4992 5502 5.519475 GCATCATGATGAAGGACTTCCTGG 61.519 50.000 34.65 7.60 42.22 4.45
5225 5909 3.814268 GACGGCTGCGGGTACGTA 61.814 66.667 11.99 0.00 43.45 3.57
5226 5910 3.129913 GACGGCTGCGGGTACGTAT 62.130 63.158 11.99 0.00 43.45 3.06
5227 5911 2.657296 CGGCTGCGGGTACGTATG 60.657 66.667 0.00 0.00 43.45 2.39
5228 5912 2.809706 GGCTGCGGGTACGTATGA 59.190 61.111 0.00 0.00 43.45 2.15
5229 5913 1.366366 GGCTGCGGGTACGTATGAT 59.634 57.895 0.00 0.00 43.45 2.45
5230 5914 0.249741 GGCTGCGGGTACGTATGATT 60.250 55.000 0.00 0.00 43.45 2.57
5231 5915 1.578583 GCTGCGGGTACGTATGATTT 58.421 50.000 0.00 0.00 43.45 2.17
5232 5916 2.546373 GGCTGCGGGTACGTATGATTTA 60.546 50.000 0.00 0.00 43.45 1.40
5233 5917 2.473984 GCTGCGGGTACGTATGATTTAC 59.526 50.000 0.00 0.00 43.45 2.01
5234 5918 3.797865 GCTGCGGGTACGTATGATTTACT 60.798 47.826 0.00 0.00 43.45 2.24
5235 5919 4.365723 CTGCGGGTACGTATGATTTACTT 58.634 43.478 0.00 0.00 43.45 2.24
5236 5920 4.362279 TGCGGGTACGTATGATTTACTTC 58.638 43.478 0.00 0.00 43.45 3.01
5237 5921 4.098349 TGCGGGTACGTATGATTTACTTCT 59.902 41.667 0.00 0.00 43.45 2.85
5238 5922 5.045872 GCGGGTACGTATGATTTACTTCTT 58.954 41.667 0.00 0.00 43.45 2.52
5239 5923 5.051240 GCGGGTACGTATGATTTACTTCTTG 60.051 44.000 0.00 0.00 43.45 3.02
5240 5924 6.038356 CGGGTACGTATGATTTACTTCTTGT 58.962 40.000 0.00 0.00 34.81 3.16
5241 5925 6.532657 CGGGTACGTATGATTTACTTCTTGTT 59.467 38.462 0.00 0.00 34.81 2.83
5242 5926 7.701924 CGGGTACGTATGATTTACTTCTTGTTA 59.298 37.037 0.00 0.00 34.81 2.41
5243 5927 9.369904 GGGTACGTATGATTTACTTCTTGTTAA 57.630 33.333 0.00 0.00 0.00 2.01
5247 5931 8.430063 ACGTATGATTTACTTCTTGTTAACACG 58.570 33.333 8.07 6.79 0.00 4.49
5248 5932 8.430063 CGTATGATTTACTTCTTGTTAACACGT 58.570 33.333 8.07 6.08 0.00 4.49
5249 5933 9.737025 GTATGATTTACTTCTTGTTAACACGTC 57.263 33.333 8.07 0.00 0.00 4.34
5250 5934 7.181143 TGATTTACTTCTTGTTAACACGTCC 57.819 36.000 8.07 0.00 0.00 4.79
5251 5935 6.987992 TGATTTACTTCTTGTTAACACGTCCT 59.012 34.615 8.07 0.00 0.00 3.85
5252 5936 6.592798 TTTACTTCTTGTTAACACGTCCTG 57.407 37.500 8.07 0.00 0.00 3.86
5253 5937 2.870411 ACTTCTTGTTAACACGTCCTGC 59.130 45.455 8.07 0.00 0.00 4.85
5254 5938 2.902705 TCTTGTTAACACGTCCTGCT 57.097 45.000 8.07 0.00 0.00 4.24
5255 5939 2.479837 TCTTGTTAACACGTCCTGCTG 58.520 47.619 8.07 0.00 0.00 4.41
5256 5940 1.531149 CTTGTTAACACGTCCTGCTGG 59.469 52.381 8.07 2.58 0.00 4.85
5257 5941 0.250124 TGTTAACACGTCCTGCTGGG 60.250 55.000 10.07 0.00 0.00 4.45
5258 5942 0.250166 GTTAACACGTCCTGCTGGGT 60.250 55.000 10.07 0.00 36.25 4.51
5259 5943 0.470766 TTAACACGTCCTGCTGGGTT 59.529 50.000 10.07 8.30 36.25 4.11
5260 5944 0.250124 TAACACGTCCTGCTGGGTTG 60.250 55.000 10.07 7.08 36.25 3.77
5261 5945 1.978455 AACACGTCCTGCTGGGTTGA 61.978 55.000 10.07 0.00 36.25 3.18
5262 5946 1.003355 CACGTCCTGCTGGGTTGAT 60.003 57.895 10.07 0.00 36.25 2.57
5263 5947 0.249120 CACGTCCTGCTGGGTTGATA 59.751 55.000 10.07 0.00 36.25 2.15
5264 5948 1.134401 CACGTCCTGCTGGGTTGATAT 60.134 52.381 10.07 0.00 36.25 1.63
5265 5949 1.134401 ACGTCCTGCTGGGTTGATATG 60.134 52.381 10.07 0.00 36.25 1.78
5266 5950 1.138859 CGTCCTGCTGGGTTGATATGA 59.861 52.381 10.07 0.00 36.25 2.15
5267 5951 2.804572 CGTCCTGCTGGGTTGATATGAG 60.805 54.545 10.07 0.00 36.25 2.90
5268 5952 1.141657 TCCTGCTGGGTTGATATGAGC 59.858 52.381 10.07 0.00 36.25 4.26
5269 5953 1.134007 CCTGCTGGGTTGATATGAGCA 60.134 52.381 0.71 0.00 37.33 4.26
5270 5954 2.336945 TGCTGGGTTGATATGAGCAG 57.663 50.000 0.00 0.00 34.78 4.24
5271 5955 0.950116 GCTGGGTTGATATGAGCAGC 59.050 55.000 0.00 0.00 0.00 5.25
5272 5956 1.602311 CTGGGTTGATATGAGCAGCC 58.398 55.000 0.00 0.00 36.08 4.85
5273 5957 1.142465 CTGGGTTGATATGAGCAGCCT 59.858 52.381 0.00 0.00 36.91 4.58
5274 5958 1.565759 TGGGTTGATATGAGCAGCCTT 59.434 47.619 0.00 0.00 36.91 4.35
5275 5959 1.952296 GGGTTGATATGAGCAGCCTTG 59.048 52.381 0.00 0.00 36.91 3.61
5276 5960 2.648059 GGTTGATATGAGCAGCCTTGT 58.352 47.619 0.00 0.00 34.26 3.16
5277 5961 2.357009 GGTTGATATGAGCAGCCTTGTG 59.643 50.000 0.00 0.00 34.26 3.33
5278 5962 3.273434 GTTGATATGAGCAGCCTTGTGA 58.727 45.455 0.00 0.00 0.00 3.58
5279 5963 3.632643 TGATATGAGCAGCCTTGTGAA 57.367 42.857 0.00 0.00 0.00 3.18
5280 5964 4.160642 TGATATGAGCAGCCTTGTGAAT 57.839 40.909 0.00 0.00 0.00 2.57
5281 5965 4.529897 TGATATGAGCAGCCTTGTGAATT 58.470 39.130 0.00 0.00 0.00 2.17
5282 5966 4.951715 TGATATGAGCAGCCTTGTGAATTT 59.048 37.500 0.00 0.00 0.00 1.82
5283 5967 3.587797 ATGAGCAGCCTTGTGAATTTG 57.412 42.857 0.00 0.00 0.00 2.32
5284 5968 2.309613 TGAGCAGCCTTGTGAATTTGT 58.690 42.857 0.00 0.00 0.00 2.83
5285 5969 2.034939 TGAGCAGCCTTGTGAATTTGTG 59.965 45.455 0.00 0.00 0.00 3.33
5286 5970 2.294233 GAGCAGCCTTGTGAATTTGTGA 59.706 45.455 0.00 0.00 0.00 3.58
5287 5971 2.895404 AGCAGCCTTGTGAATTTGTGAT 59.105 40.909 0.00 0.00 0.00 3.06
5288 5972 3.057033 AGCAGCCTTGTGAATTTGTGATC 60.057 43.478 0.00 0.00 0.00 2.92
5289 5973 3.841643 CAGCCTTGTGAATTTGTGATCC 58.158 45.455 0.00 0.00 0.00 3.36
5290 5974 2.489329 AGCCTTGTGAATTTGTGATCCG 59.511 45.455 0.00 0.00 0.00 4.18
5291 5975 2.228822 GCCTTGTGAATTTGTGATCCGT 59.771 45.455 0.00 0.00 0.00 4.69
5292 5976 3.825308 CCTTGTGAATTTGTGATCCGTG 58.175 45.455 0.00 0.00 0.00 4.94
5293 5977 3.253188 CCTTGTGAATTTGTGATCCGTGT 59.747 43.478 0.00 0.00 0.00 4.49
5294 5978 3.894782 TGTGAATTTGTGATCCGTGTG 57.105 42.857 0.00 0.00 0.00 3.82
5295 5979 2.031245 TGTGAATTTGTGATCCGTGTGC 60.031 45.455 0.00 0.00 0.00 4.57
5296 5980 1.196581 TGAATTTGTGATCCGTGTGCG 59.803 47.619 0.00 0.00 37.95 5.34
5297 5981 1.196808 GAATTTGTGATCCGTGTGCGT 59.803 47.619 0.00 0.00 36.15 5.24
5298 5982 0.516877 ATTTGTGATCCGTGTGCGTG 59.483 50.000 0.00 0.00 36.15 5.34
5299 5983 2.111932 TTTGTGATCCGTGTGCGTGC 62.112 55.000 0.00 0.00 36.15 5.34
5300 5984 3.041351 GTGATCCGTGTGCGTGCA 61.041 61.111 0.00 0.00 36.15 4.57
5301 5985 2.738139 TGATCCGTGTGCGTGCAG 60.738 61.111 0.00 0.00 36.15 4.41
5302 5986 3.490759 GATCCGTGTGCGTGCAGG 61.491 66.667 1.01 1.01 36.15 4.85
5303 5987 4.314440 ATCCGTGTGCGTGCAGGT 62.314 61.111 8.40 0.00 36.15 4.00
5304 5988 2.829043 GATCCGTGTGCGTGCAGGTA 62.829 60.000 8.40 0.00 36.15 3.08
5305 5989 3.411351 CCGTGTGCGTGCAGGTAC 61.411 66.667 19.02 19.02 36.15 3.34
5306 5990 3.762992 CGTGTGCGTGCAGGTACG 61.763 66.667 20.14 17.18 46.28 3.67
5587 6271 3.799755 GCCATCCACAACGGCGAC 61.800 66.667 16.62 0.00 35.79 5.19
6057 6917 8.530804 TTTTGGTATTAGAGTACTACTCCCTC 57.469 38.462 11.94 0.91 46.18 4.30
6058 6918 5.862845 TGGTATTAGAGTACTACTCCCTCG 58.137 45.833 11.94 0.00 46.18 4.63
6059 6919 5.221803 TGGTATTAGAGTACTACTCCCTCGG 60.222 48.000 11.94 0.00 46.18 4.63
6060 6920 5.221823 GGTATTAGAGTACTACTCCCTCGGT 60.222 48.000 11.94 0.00 46.18 4.69
6061 6921 4.851639 TTAGAGTACTACTCCCTCGGTT 57.148 45.455 11.94 0.00 46.18 4.44
6062 6922 3.280197 AGAGTACTACTCCCTCGGTTC 57.720 52.381 11.94 0.00 46.18 3.62
6063 6923 2.092484 AGAGTACTACTCCCTCGGTTCC 60.092 54.545 11.94 0.00 46.18 3.62
6064 6924 1.637553 AGTACTACTCCCTCGGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
6065 6925 2.244252 AGTACTACTCCCTCGGTTCCAT 59.756 50.000 0.00 0.00 0.00 3.41
6066 6926 3.461085 AGTACTACTCCCTCGGTTCCATA 59.539 47.826 0.00 0.00 0.00 2.74
6067 6927 3.393426 ACTACTCCCTCGGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
6068 6928 3.924922 ACTACTCCCTCGGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
6069 6929 5.070823 ACTACTCCCTCGGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
6070 6930 5.652324 ACTACTCCCTCGGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
6071 6931 6.797707 ACTACTCCCTCGGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
6072 6932 7.243824 ACTACTCCCTCGGTTCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
6073 6933 6.607004 ACTCCCTCGGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
6074 6934 6.320518 ACTCCCTCGGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
6075 6935 6.785963 ACTCCCTCGGTTCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
6076 6936 7.001099 TCCCTCGGTTCCATAATATAAGAAC 57.999 40.000 6.74 6.74 38.28 3.01
6077 6937 5.867716 CCCTCGGTTCCATAATATAAGAACG 59.132 44.000 8.38 0.00 39.58 3.95
6078 6938 6.453092 CCTCGGTTCCATAATATAAGAACGT 58.547 40.000 8.38 0.00 39.58 3.99
6079 6939 6.927381 CCTCGGTTCCATAATATAAGAACGTT 59.073 38.462 0.00 0.00 39.58 3.99
6080 6940 7.440255 CCTCGGTTCCATAATATAAGAACGTTT 59.560 37.037 0.46 0.00 39.58 3.60
6081 6941 8.721019 TCGGTTCCATAATATAAGAACGTTTT 57.279 30.769 0.46 0.00 39.58 2.43
6082 6942 9.165035 TCGGTTCCATAATATAAGAACGTTTTT 57.835 29.630 9.22 9.22 39.58 1.94
6095 6955 9.971922 ATAAGAACGTTTTTACACTACACTAGT 57.028 29.630 12.92 0.00 40.28 2.57
6144 7004 7.589958 ACAGGACAGAGGAAGTACATAATAG 57.410 40.000 0.00 0.00 0.00 1.73
6147 7007 5.839606 GGACAGAGGAAGTACATAATAGGGT 59.160 44.000 0.00 0.00 0.00 4.34
6226 7088 6.804783 ACAAAACTTACAACTACACTTGCAAC 59.195 34.615 0.00 0.00 0.00 4.17
6255 7117 1.236616 TGGCTTGCATCAACCGTCTG 61.237 55.000 0.00 0.00 0.00 3.51
6286 7148 5.293814 TGCACACAAGAAACCAATCAATTTG 59.706 36.000 0.00 0.00 34.93 2.32
6295 7157 8.611654 AGAAACCAATCAATTTGAATCCAAAG 57.388 30.769 2.68 0.00 44.53 2.77
6300 7162 8.526147 ACCAATCAATTTGAATCCAAAGTAGAG 58.474 33.333 2.68 0.00 44.53 2.43
6309 7171 8.013004 TTTGAATCCAAAGTAGAGGCTAACTCC 61.013 40.741 2.73 0.00 40.84 3.85
6319 7181 2.015587 AGGCTAACTCCTACTTCGTCG 58.984 52.381 0.00 0.00 33.95 5.12
6323 7185 0.243095 AACTCCTACTTCGTCGTGCC 59.757 55.000 0.00 0.00 0.00 5.01
6346 7208 4.062991 GTTCTTCACTCGTGGGTTATTGT 58.937 43.478 0.00 0.00 0.00 2.71
6356 7218 2.817844 GTGGGTTATTGTGGTCAGGTTC 59.182 50.000 0.00 0.00 0.00 3.62
6401 7266 7.619512 TTGGTTTGGGTTTTAATTATGTCCT 57.380 32.000 0.00 0.00 0.00 3.85
6402 7267 7.619512 TGGTTTGGGTTTTAATTATGTCCTT 57.380 32.000 0.00 0.00 0.00 3.36
6405 7270 9.811995 GGTTTGGGTTTTAATTATGTCCTTATC 57.188 33.333 0.00 0.00 0.00 1.75
6451 7316 2.173382 GTTGTGCGGTGCGTGATC 59.827 61.111 0.00 0.00 0.00 2.92
6463 7328 3.174790 CGTGATCGACGGTAATCCC 57.825 57.895 9.07 0.00 44.85 3.85
6470 7335 2.662866 TCGACGGTAATCCCATCTCTT 58.337 47.619 0.00 0.00 0.00 2.85
6483 7348 2.679837 CCATCTCTTGGGAATTCACACG 59.320 50.000 10.68 9.12 42.33 4.49
6494 7359 3.255725 GAATTCACACGTACGGGAATCA 58.744 45.455 27.01 5.16 0.00 2.57
6500 7365 3.621268 CACACGTACGGGAATCATCATTT 59.379 43.478 27.01 0.00 0.00 2.32
6502 7367 3.621268 CACGTACGGGAATCATCATTTGT 59.379 43.478 21.06 0.00 0.00 2.83
6505 7370 5.027737 CGTACGGGAATCATCATTTGTTTG 58.972 41.667 7.57 0.00 0.00 2.93
6518 7383 9.426837 TCATCATTTGTTTGATTGAGATTTTCC 57.573 29.630 0.00 0.00 34.09 3.13
6521 7386 9.781633 TCATTTGTTTGATTGAGATTTTCCATT 57.218 25.926 0.00 0.00 0.00 3.16
6579 7444 3.364442 CCATGAAACGGCTTGGCA 58.636 55.556 0.00 0.00 0.00 4.92
6583 7448 0.732571 ATGAAACGGCTTGGCATACG 59.267 50.000 0.00 0.00 0.00 3.06
6599 7464 4.202284 GGCATACGTGGTAATTAGGAAGGA 60.202 45.833 0.00 0.00 0.00 3.36
6609 7474 3.653835 ATTAGGAAGGAACAAGGAGGC 57.346 47.619 0.00 0.00 0.00 4.70
6612 7477 0.693049 GGAAGGAACAAGGAGGCAGA 59.307 55.000 0.00 0.00 0.00 4.26
6625 7490 1.201429 AGGCAGAGGGACGTGGAAAT 61.201 55.000 0.00 0.00 0.00 2.17
6635 7500 5.134661 AGGGACGTGGAAATTAAAAAGACA 58.865 37.500 0.00 0.00 0.00 3.41
6772 7637 4.988598 CCTGCTCCGTGCGGTGTT 62.989 66.667 10.60 0.00 46.27 3.32
6774 7639 1.447838 CTGCTCCGTGCGGTGTTAT 60.448 57.895 10.60 0.00 46.63 1.89
6775 7640 1.695893 CTGCTCCGTGCGGTGTTATG 61.696 60.000 10.60 0.00 46.63 1.90
6776 7641 1.447140 GCTCCGTGCGGTGTTATGA 60.447 57.895 10.60 0.00 36.47 2.15
6777 7642 1.017177 GCTCCGTGCGGTGTTATGAA 61.017 55.000 10.60 0.00 36.47 2.57
6778 7643 1.434555 CTCCGTGCGGTGTTATGAAA 58.565 50.000 10.60 0.00 36.47 2.69
6779 7644 1.393539 CTCCGTGCGGTGTTATGAAAG 59.606 52.381 10.60 0.00 36.47 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 156 4.459089 GTGACGGCCTGCCTCCTC 62.459 72.222 6.60 0.00 0.00 3.71
195 197 1.241990 TGAGGCAAGCGACTACTCGT 61.242 55.000 0.00 0.00 42.33 4.18
196 198 0.101399 ATGAGGCAAGCGACTACTCG 59.899 55.000 0.00 0.00 43.28 4.18
206 208 0.679002 CCACACCCTGATGAGGCAAG 60.679 60.000 0.00 0.00 38.17 4.01
287 289 5.595542 GGGAGTACCTTAAAGTTGTTTGGTT 59.404 40.000 0.00 0.00 35.85 3.67
288 290 5.135383 GGGAGTACCTTAAAGTTGTTTGGT 58.865 41.667 0.00 0.00 35.85 3.67
289 291 5.700722 GGGAGTACCTTAAAGTTGTTTGG 57.299 43.478 0.00 0.00 35.85 3.28
309 311 8.567878 TACGACAAGTAATTCCGAATGGAGGG 62.568 46.154 0.00 0.00 37.76 4.30
310 312 5.680408 TACGACAAGTAATTCCGAATGGAGG 60.680 44.000 0.00 0.00 37.76 4.30
311 313 5.345702 TACGACAAGTAATTCCGAATGGAG 58.654 41.667 0.00 0.00 37.76 3.86
313 315 5.345702 TCTACGACAAGTAATTCCGAATGG 58.654 41.667 0.00 0.00 34.45 3.16
314 316 6.880822 TTCTACGACAAGTAATTCCGAATG 57.119 37.500 0.00 0.00 34.45 2.67
316 318 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
317 319 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
318 320 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
319 321 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
320 322 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
322 324 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
323 325 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
325 327 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
326 328 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
327 329 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
328 330 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
329 331 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
330 332 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
362 364 9.383519 TGTCTTGAAAATGGATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
363 365 9.958180 TTGTCTTGAAAATGGATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
364 366 9.958180 TTTGTCTTGAAAATGGATGTATCTAGA 57.042 29.630 0.00 0.00 0.00 2.43
371 373 9.657419 GGAATTATTTGTCTTGAAAATGGATGT 57.343 29.630 0.00 0.00 0.00 3.06
372 374 9.656040 TGGAATTATTTGTCTTGAAAATGGATG 57.344 29.630 0.00 0.00 0.00 3.51
376 378 9.796062 CGTTTGGAATTATTTGTCTTGAAAATG 57.204 29.630 0.00 0.00 0.00 2.32
383 385 5.185056 CCCTCCGTTTGGAATTATTTGTCTT 59.815 40.000 0.00 0.00 45.87 3.01
384 386 4.705023 CCCTCCGTTTGGAATTATTTGTCT 59.295 41.667 0.00 0.00 45.87 3.41
385 387 4.703093 TCCCTCCGTTTGGAATTATTTGTC 59.297 41.667 0.00 0.00 45.87 3.18
386 388 4.668636 TCCCTCCGTTTGGAATTATTTGT 58.331 39.130 0.00 0.00 45.87 2.83
387 389 4.705023 ACTCCCTCCGTTTGGAATTATTTG 59.295 41.667 0.00 0.00 45.87 2.32
388 390 4.930696 ACTCCCTCCGTTTGGAATTATTT 58.069 39.130 0.00 0.00 45.87 1.40
390 392 5.703730 TTACTCCCTCCGTTTGGAATTAT 57.296 39.130 0.00 0.00 45.87 1.28
391 393 5.502089 TTTACTCCCTCCGTTTGGAATTA 57.498 39.130 0.00 0.00 45.87 1.40
392 394 4.376225 TTTACTCCCTCCGTTTGGAATT 57.624 40.909 0.00 0.00 45.87 2.17
394 396 5.703730 ATATTTACTCCCTCCGTTTGGAA 57.296 39.130 0.00 0.00 45.87 3.53
395 397 5.703730 AATATTTACTCCCTCCGTTTGGA 57.296 39.130 0.00 0.00 43.88 3.53
396 398 6.405397 CCAAAATATTTACTCCCTCCGTTTGG 60.405 42.308 0.01 0.00 36.42 3.28
397 399 6.560711 CCAAAATATTTACTCCCTCCGTTTG 58.439 40.000 0.01 0.00 0.00 2.93
399 401 4.643334 GCCAAAATATTTACTCCCTCCGTT 59.357 41.667 0.01 0.00 0.00 4.44
400 402 4.079958 AGCCAAAATATTTACTCCCTCCGT 60.080 41.667 0.01 0.00 0.00 4.69
401 403 4.461198 AGCCAAAATATTTACTCCCTCCG 58.539 43.478 0.01 0.00 0.00 4.63
402 404 5.008712 CGAAGCCAAAATATTTACTCCCTCC 59.991 44.000 0.01 0.00 0.00 4.30
403 405 5.820947 TCGAAGCCAAAATATTTACTCCCTC 59.179 40.000 0.01 0.00 0.00 4.30
406 408 6.363473 CGATCGAAGCCAAAATATTTACTCC 58.637 40.000 10.26 0.00 0.00 3.85
407 409 6.202188 TCCGATCGAAGCCAAAATATTTACTC 59.798 38.462 18.66 0.00 0.00 2.59
408 410 6.053005 TCCGATCGAAGCCAAAATATTTACT 58.947 36.000 18.66 0.00 0.00 2.24
412 414 5.828299 TTTCCGATCGAAGCCAAAATATT 57.172 34.783 18.66 0.00 0.00 1.28
427 429 3.815809 TCACTCACCTTGTTTTTCCGAT 58.184 40.909 0.00 0.00 0.00 4.18
429 431 3.304659 CCATCACTCACCTTGTTTTTCCG 60.305 47.826 0.00 0.00 0.00 4.30
437 439 0.987294 AGTCCCCATCACTCACCTTG 59.013 55.000 0.00 0.00 0.00 3.61
438 440 1.747444 AAGTCCCCATCACTCACCTT 58.253 50.000 0.00 0.00 0.00 3.50
442 445 2.054021 TGTGAAAGTCCCCATCACTCA 58.946 47.619 6.68 0.00 42.99 3.41
454 457 0.623723 ACAGGGTGGTGTGTGAAAGT 59.376 50.000 0.00 0.00 0.00 2.66
464 467 0.178990 GGAAAGCAAGACAGGGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
465 468 0.895559 GGGAAAGCAAGACAGGGTGG 60.896 60.000 0.00 0.00 0.00 4.61
475 478 1.075482 CAGAGCCAGGGGAAAGCAA 59.925 57.895 0.00 0.00 0.00 3.91
476 479 2.759114 CAGAGCCAGGGGAAAGCA 59.241 61.111 0.00 0.00 0.00 3.91
542 545 7.486802 TGGTAAAAAGAAACGGAGAAAGTAG 57.513 36.000 0.00 0.00 0.00 2.57
544 547 6.320418 ACATGGTAAAAAGAAACGGAGAAAGT 59.680 34.615 0.00 0.00 0.00 2.66
545 548 6.735130 ACATGGTAAAAAGAAACGGAGAAAG 58.265 36.000 0.00 0.00 0.00 2.62
572 575 9.685276 TGGTCAATGACTGTGATTAAATCTTAT 57.315 29.630 13.53 0.00 32.47 1.73
573 576 9.166173 CTGGTCAATGACTGTGATTAAATCTTA 57.834 33.333 13.53 0.00 32.47 2.10
575 578 6.094603 GCTGGTCAATGACTGTGATTAAATCT 59.905 38.462 13.53 0.00 32.47 2.40
576 579 6.094603 AGCTGGTCAATGACTGTGATTAAATC 59.905 38.462 13.53 0.00 32.47 2.17
577 580 5.948162 AGCTGGTCAATGACTGTGATTAAAT 59.052 36.000 13.53 0.00 32.47 1.40
578 581 5.316167 AGCTGGTCAATGACTGTGATTAAA 58.684 37.500 13.53 0.00 32.47 1.52
580 583 4.558226 AGCTGGTCAATGACTGTGATTA 57.442 40.909 13.53 0.00 32.47 1.75
581 584 3.430042 AGCTGGTCAATGACTGTGATT 57.570 42.857 13.53 0.00 32.47 2.57
584 587 2.620115 ACAAAGCTGGTCAATGACTGTG 59.380 45.455 13.53 1.34 32.47 3.66
585 588 2.936202 ACAAAGCTGGTCAATGACTGT 58.064 42.857 13.53 5.66 32.47 3.55
586 589 4.318332 TCTACAAAGCTGGTCAATGACTG 58.682 43.478 13.53 7.81 32.47 3.51
587 590 4.623932 TCTACAAAGCTGGTCAATGACT 57.376 40.909 13.53 0.00 32.47 3.41
588 591 5.689383 TTTCTACAAAGCTGGTCAATGAC 57.311 39.130 4.51 4.51 0.00 3.06
589 592 6.707440 TTTTTCTACAAAGCTGGTCAATGA 57.293 33.333 0.00 0.00 0.00 2.57
648 651 9.941325 TGTTAGGTGCATCATGAAATTAATTTT 57.059 25.926 14.45 0.00 0.00 1.82
649 652 9.941325 TTGTTAGGTGCATCATGAAATTAATTT 57.059 25.926 13.24 13.24 0.00 1.82
654 657 9.537192 CAATATTGTTAGGTGCATCATGAAATT 57.463 29.630 7.32 0.00 0.00 1.82
655 658 8.916062 TCAATATTGTTAGGTGCATCATGAAAT 58.084 29.630 14.97 0.00 0.00 2.17
656 659 8.291191 TCAATATTGTTAGGTGCATCATGAAA 57.709 30.769 14.97 0.00 0.00 2.69
657 660 7.878547 TCAATATTGTTAGGTGCATCATGAA 57.121 32.000 14.97 0.00 0.00 2.57
659 662 9.188588 GAAATCAATATTGTTAGGTGCATCATG 57.811 33.333 14.97 0.00 0.00 3.07
660 663 8.916062 TGAAATCAATATTGTTAGGTGCATCAT 58.084 29.630 14.97 0.00 0.00 2.45
661 664 8.291191 TGAAATCAATATTGTTAGGTGCATCA 57.709 30.769 14.97 5.53 0.00 3.07
776 779 1.411612 CGGCGAAGGTTATACTCCCTT 59.588 52.381 0.00 0.00 43.72 3.95
777 780 1.038280 CGGCGAAGGTTATACTCCCT 58.962 55.000 0.00 0.00 0.00 4.20
778 781 0.033090 CCGGCGAAGGTTATACTCCC 59.967 60.000 9.30 0.00 0.00 4.30
779 782 1.035139 TCCGGCGAAGGTTATACTCC 58.965 55.000 9.30 0.00 0.00 3.85
780 783 3.755378 TCTATCCGGCGAAGGTTATACTC 59.245 47.826 9.30 0.00 0.00 2.59
806 878 2.442212 TCCTTGTGCAATACGACGAA 57.558 45.000 0.00 0.00 0.00 3.85
808 880 2.478894 ACTTTCCTTGTGCAATACGACG 59.521 45.455 0.00 0.00 0.00 5.12
809 881 4.435651 GCTACTTTCCTTGTGCAATACGAC 60.436 45.833 0.00 0.00 0.00 4.34
810 882 3.682858 GCTACTTTCCTTGTGCAATACGA 59.317 43.478 0.00 0.00 0.00 3.43
865 977 2.355756 GACGTATTGCTAGTCGGTACCA 59.644 50.000 13.54 0.00 0.00 3.25
898 1030 5.634020 GCTGGTCGTGACTATTTATATGACC 59.366 44.000 0.00 0.00 45.25 4.02
964 1113 0.721811 GATCGATCGAGGTGCGTACG 60.722 60.000 23.84 11.84 41.80 3.67
1384 1544 1.878069 CGCCGACGATGCAGATCAA 60.878 57.895 0.00 0.00 43.93 2.57
1425 1585 3.071892 TGTGATGAAGAACCCGGTTAGTT 59.928 43.478 1.75 0.00 0.00 2.24
1428 1588 2.289819 GGTGTGATGAAGAACCCGGTTA 60.290 50.000 1.75 0.00 0.00 2.85
1583 1744 1.885560 TTTCGTCCGAGATTTTGCCA 58.114 45.000 0.00 0.00 0.00 4.92
1793 1998 4.374689 TGTTGGAGGCCACTTTATAACA 57.625 40.909 5.01 3.60 30.78 2.41
2811 3196 1.616159 TGCTCCATCCATGCATGATG 58.384 50.000 28.31 24.47 0.00 3.07
3514 3920 4.956075 ACCAAGGAGTCTCACAATGTTTTT 59.044 37.500 1.47 0.00 0.00 1.94
3655 4062 5.045578 TGCTGCTTTAGATTTAGGAGAGGTT 60.046 40.000 0.00 0.00 32.20 3.50
3790 4241 2.221906 GAGGGCGTCCGCTTGACTAA 62.222 60.000 11.82 0.00 42.13 2.24
3791 4242 2.678934 AGGGCGTCCGCTTGACTA 60.679 61.111 11.82 0.00 42.13 2.59
4298 4752 3.984200 GACGACGGCCTGGTAGCAC 62.984 68.421 0.00 0.00 0.00 4.40
4302 4756 2.149803 CTGTTGACGACGGCCTGGTA 62.150 60.000 0.00 0.00 0.00 3.25
4303 4757 3.515316 CTGTTGACGACGGCCTGGT 62.515 63.158 0.00 0.00 0.00 4.00
4304 4758 2.738521 CTGTTGACGACGGCCTGG 60.739 66.667 0.00 0.00 0.00 4.45
4545 5010 5.001874 CCTGCATGCATTGTATGTATCTCT 58.998 41.667 22.97 0.00 33.12 3.10
4555 5065 0.744874 GCTCATCCTGCATGCATTGT 59.255 50.000 22.97 6.94 31.70 2.71
5129 5645 0.035317 TGTCGCCAGTGAGCATCTTT 59.965 50.000 0.00 0.00 34.92 2.52
5224 5908 8.928733 GGACGTGTTAACAAGAAGTAAATCATA 58.071 33.333 25.31 0.00 0.00 2.15
5225 5909 7.660208 AGGACGTGTTAACAAGAAGTAAATCAT 59.340 33.333 25.31 7.74 0.00 2.45
5226 5910 6.987992 AGGACGTGTTAACAAGAAGTAAATCA 59.012 34.615 25.31 0.00 0.00 2.57
5227 5911 7.288672 CAGGACGTGTTAACAAGAAGTAAATC 58.711 38.462 25.31 11.74 0.00 2.17
5228 5912 6.293244 GCAGGACGTGTTAACAAGAAGTAAAT 60.293 38.462 25.31 3.65 0.00 1.40
5229 5913 5.006941 GCAGGACGTGTTAACAAGAAGTAAA 59.993 40.000 25.31 0.00 0.00 2.01
5230 5914 4.508861 GCAGGACGTGTTAACAAGAAGTAA 59.491 41.667 25.31 0.00 0.00 2.24
5231 5915 4.053295 GCAGGACGTGTTAACAAGAAGTA 58.947 43.478 25.31 0.00 0.00 2.24
5232 5916 2.870411 GCAGGACGTGTTAACAAGAAGT 59.130 45.455 25.31 15.57 0.00 3.01
5233 5917 3.059597 CAGCAGGACGTGTTAACAAGAAG 60.060 47.826 25.31 12.81 0.00 2.85
5234 5918 2.869801 CAGCAGGACGTGTTAACAAGAA 59.130 45.455 25.31 0.00 0.00 2.52
5235 5919 2.479837 CAGCAGGACGTGTTAACAAGA 58.520 47.619 25.31 0.00 0.00 3.02
5236 5920 1.531149 CCAGCAGGACGTGTTAACAAG 59.469 52.381 18.35 18.35 36.89 3.16
5237 5921 1.588674 CCAGCAGGACGTGTTAACAA 58.411 50.000 10.51 0.00 36.89 2.83
5238 5922 0.250124 CCCAGCAGGACGTGTTAACA 60.250 55.000 3.59 3.59 38.24 2.41
5239 5923 0.250166 ACCCAGCAGGACGTGTTAAC 60.250 55.000 0.00 0.00 39.89 2.01
5240 5924 0.470766 AACCCAGCAGGACGTGTTAA 59.529 50.000 0.00 0.00 39.89 2.01
5241 5925 0.250124 CAACCCAGCAGGACGTGTTA 60.250 55.000 0.00 0.00 39.89 2.41
5242 5926 1.525995 CAACCCAGCAGGACGTGTT 60.526 57.895 0.00 0.00 39.89 3.32
5243 5927 1.768684 ATCAACCCAGCAGGACGTGT 61.769 55.000 0.00 0.00 39.89 4.49
5244 5928 0.249120 TATCAACCCAGCAGGACGTG 59.751 55.000 0.00 0.00 39.89 4.49
5245 5929 1.134401 CATATCAACCCAGCAGGACGT 60.134 52.381 0.00 0.00 39.89 4.34
5246 5930 1.138859 TCATATCAACCCAGCAGGACG 59.861 52.381 0.00 0.00 39.89 4.79
5247 5931 2.843701 CTCATATCAACCCAGCAGGAC 58.156 52.381 0.00 0.00 39.89 3.85
5248 5932 1.141657 GCTCATATCAACCCAGCAGGA 59.858 52.381 0.00 0.00 39.89 3.86
5249 5933 1.134007 TGCTCATATCAACCCAGCAGG 60.134 52.381 0.00 0.00 43.78 4.85
5250 5934 2.336945 TGCTCATATCAACCCAGCAG 57.663 50.000 0.00 0.00 35.17 4.24
5251 5935 1.748244 GCTGCTCATATCAACCCAGCA 60.748 52.381 5.64 0.00 43.66 4.41
5252 5936 0.950116 GCTGCTCATATCAACCCAGC 59.050 55.000 0.00 0.00 38.86 4.85
5253 5937 1.142465 AGGCTGCTCATATCAACCCAG 59.858 52.381 0.00 0.00 0.00 4.45
5254 5938 1.216064 AGGCTGCTCATATCAACCCA 58.784 50.000 0.00 0.00 0.00 4.51
5255 5939 1.952296 CAAGGCTGCTCATATCAACCC 59.048 52.381 0.00 0.00 0.00 4.11
5256 5940 2.357009 CACAAGGCTGCTCATATCAACC 59.643 50.000 0.00 0.00 0.00 3.77
5257 5941 3.273434 TCACAAGGCTGCTCATATCAAC 58.727 45.455 0.00 0.00 0.00 3.18
5258 5942 3.632643 TCACAAGGCTGCTCATATCAA 57.367 42.857 0.00 0.00 0.00 2.57
5259 5943 3.632643 TTCACAAGGCTGCTCATATCA 57.367 42.857 0.00 0.00 0.00 2.15
5260 5944 5.163581 ACAAATTCACAAGGCTGCTCATATC 60.164 40.000 0.00 0.00 0.00 1.63
5261 5945 4.708421 ACAAATTCACAAGGCTGCTCATAT 59.292 37.500 0.00 0.00 0.00 1.78
5262 5946 4.081406 ACAAATTCACAAGGCTGCTCATA 58.919 39.130 0.00 0.00 0.00 2.15
5263 5947 2.895404 ACAAATTCACAAGGCTGCTCAT 59.105 40.909 0.00 0.00 0.00 2.90
5264 5948 2.034939 CACAAATTCACAAGGCTGCTCA 59.965 45.455 0.00 0.00 0.00 4.26
5265 5949 2.294233 TCACAAATTCACAAGGCTGCTC 59.706 45.455 0.00 0.00 0.00 4.26
5266 5950 2.309613 TCACAAATTCACAAGGCTGCT 58.690 42.857 0.00 0.00 0.00 4.24
5267 5951 2.798976 TCACAAATTCACAAGGCTGC 57.201 45.000 0.00 0.00 0.00 5.25
5268 5952 3.671433 CGGATCACAAATTCACAAGGCTG 60.671 47.826 0.00 0.00 0.00 4.85
5269 5953 2.489329 CGGATCACAAATTCACAAGGCT 59.511 45.455 0.00 0.00 0.00 4.58
5270 5954 2.228822 ACGGATCACAAATTCACAAGGC 59.771 45.455 0.00 0.00 0.00 4.35
5271 5955 3.253188 ACACGGATCACAAATTCACAAGG 59.747 43.478 0.00 0.00 0.00 3.61
5272 5956 4.221342 CACACGGATCACAAATTCACAAG 58.779 43.478 0.00 0.00 0.00 3.16
5273 5957 3.549827 GCACACGGATCACAAATTCACAA 60.550 43.478 0.00 0.00 0.00 3.33
5274 5958 2.031245 GCACACGGATCACAAATTCACA 60.031 45.455 0.00 0.00 0.00 3.58
5275 5959 2.584791 GCACACGGATCACAAATTCAC 58.415 47.619 0.00 0.00 0.00 3.18
5276 5960 1.196581 CGCACACGGATCACAAATTCA 59.803 47.619 0.00 0.00 34.97 2.57
5277 5961 1.196808 ACGCACACGGATCACAAATTC 59.803 47.619 0.00 0.00 46.04 2.17
5278 5962 1.069296 CACGCACACGGATCACAAATT 60.069 47.619 0.00 0.00 46.04 1.82
5279 5963 0.516877 CACGCACACGGATCACAAAT 59.483 50.000 0.00 0.00 46.04 2.32
5280 5964 1.938125 CACGCACACGGATCACAAA 59.062 52.632 0.00 0.00 46.04 2.83
5281 5965 2.603247 GCACGCACACGGATCACAA 61.603 57.895 0.00 0.00 46.04 3.33
5282 5966 3.041351 GCACGCACACGGATCACA 61.041 61.111 0.00 0.00 46.04 3.58
5283 5967 3.015293 CTGCACGCACACGGATCAC 62.015 63.158 0.00 0.00 46.04 3.06
5284 5968 2.738139 CTGCACGCACACGGATCA 60.738 61.111 0.00 0.00 46.04 2.92
5285 5969 2.829043 TACCTGCACGCACACGGATC 62.829 60.000 3.06 0.00 46.04 3.36
5286 5970 2.938086 TACCTGCACGCACACGGAT 61.938 57.895 3.06 0.00 46.04 4.18
5287 5971 3.607661 TACCTGCACGCACACGGA 61.608 61.111 3.06 0.00 46.04 4.69
5288 5972 3.411351 GTACCTGCACGCACACGG 61.411 66.667 0.00 0.00 46.04 4.94
5290 5974 2.355363 TCGTACCTGCACGCACAC 60.355 61.111 0.00 0.00 41.67 3.82
5291 5975 2.049526 CTCGTACCTGCACGCACA 60.050 61.111 0.00 0.00 41.67 4.57
5292 5976 1.615107 GAACTCGTACCTGCACGCAC 61.615 60.000 0.00 0.00 41.67 5.34
5293 5977 1.372499 GAACTCGTACCTGCACGCA 60.372 57.895 0.00 0.00 41.67 5.24
5294 5978 2.092882 GGAACTCGTACCTGCACGC 61.093 63.158 0.00 0.00 41.67 5.34
5295 5979 0.732880 CTGGAACTCGTACCTGCACG 60.733 60.000 0.00 0.00 43.28 5.34
5296 5980 0.601558 TCTGGAACTCGTACCTGCAC 59.398 55.000 0.00 0.00 0.00 4.57
5297 5981 1.204704 CATCTGGAACTCGTACCTGCA 59.795 52.381 0.00 0.00 0.00 4.41
5298 5982 1.927895 CATCTGGAACTCGTACCTGC 58.072 55.000 0.00 0.00 0.00 4.85
5299 5983 1.204704 TGCATCTGGAACTCGTACCTG 59.795 52.381 0.00 0.00 0.00 4.00
5300 5984 1.478510 CTGCATCTGGAACTCGTACCT 59.521 52.381 0.00 0.00 0.00 3.08
5301 5985 1.204941 ACTGCATCTGGAACTCGTACC 59.795 52.381 0.00 0.00 0.00 3.34
5302 5986 2.656560 ACTGCATCTGGAACTCGTAC 57.343 50.000 0.00 0.00 0.00 3.67
5303 5987 2.096980 CGTACTGCATCTGGAACTCGTA 59.903 50.000 0.00 0.00 0.00 3.43
5304 5988 1.135373 CGTACTGCATCTGGAACTCGT 60.135 52.381 0.00 0.00 0.00 4.18
5305 5989 1.550065 CGTACTGCATCTGGAACTCG 58.450 55.000 0.00 0.00 0.00 4.18
5306 5990 1.927895 CCGTACTGCATCTGGAACTC 58.072 55.000 0.00 0.00 0.00 3.01
5398 6082 3.768185 GAAGCTGCCGTCGCCGATA 62.768 63.158 0.00 0.00 35.63 2.92
5755 6587 3.909651 GGGTTGGGTGGCCTGGAA 61.910 66.667 3.32 0.00 0.00 3.53
5983 6841 6.642733 TTTGAGATAAAGGACTGGGAAGAT 57.357 37.500 0.00 0.00 0.00 2.40
6037 6897 5.863965 ACCGAGGGAGTAGTACTCTAATAC 58.136 45.833 25.70 11.52 44.46 1.89
6040 6900 4.384647 GGAACCGAGGGAGTAGTACTCTAA 60.385 50.000 25.70 0.00 44.46 2.10
6041 6901 3.135530 GGAACCGAGGGAGTAGTACTCTA 59.864 52.174 25.70 0.00 44.46 2.43
6052 6912 6.294899 CGTTCTTATATTATGGAACCGAGGGA 60.295 42.308 13.63 0.00 35.90 4.20
6053 6913 5.867716 CGTTCTTATATTATGGAACCGAGGG 59.132 44.000 13.63 0.00 35.90 4.30
6054 6914 6.453092 ACGTTCTTATATTATGGAACCGAGG 58.547 40.000 13.63 0.00 35.90 4.63
6055 6915 7.941795 AACGTTCTTATATTATGGAACCGAG 57.058 36.000 0.00 7.10 35.90 4.63
6056 6916 8.721019 AAAACGTTCTTATATTATGGAACCGA 57.279 30.769 0.00 0.00 35.90 4.69
6069 6929 9.971922 ACTAGTGTAGTGTAAAAACGTTCTTAT 57.028 29.630 0.00 0.00 37.69 1.73
6112 6972 9.656323 TGTACTTCCTCTGTCCTGTAATATAAT 57.344 33.333 0.00 0.00 0.00 1.28
6113 6973 9.656323 ATGTACTTCCTCTGTCCTGTAATATAA 57.344 33.333 0.00 0.00 0.00 0.98
6115 6975 9.656323 TTATGTACTTCCTCTGTCCTGTAATAT 57.344 33.333 0.00 0.00 0.00 1.28
6116 6976 9.656323 ATTATGTACTTCCTCTGTCCTGTAATA 57.344 33.333 0.00 0.00 0.00 0.98
6117 6977 7.973048 TTATGTACTTCCTCTGTCCTGTAAT 57.027 36.000 0.00 0.00 0.00 1.89
6118 6978 7.973048 ATTATGTACTTCCTCTGTCCTGTAA 57.027 36.000 0.00 0.00 0.00 2.41
6119 6979 7.724506 CCTATTATGTACTTCCTCTGTCCTGTA 59.275 40.741 0.00 0.00 0.00 2.74
6120 6980 6.551601 CCTATTATGTACTTCCTCTGTCCTGT 59.448 42.308 0.00 0.00 0.00 4.00
6121 6981 6.015010 CCCTATTATGTACTTCCTCTGTCCTG 60.015 46.154 0.00 0.00 0.00 3.86
6122 6982 6.078664 CCCTATTATGTACTTCCTCTGTCCT 58.921 44.000 0.00 0.00 0.00 3.85
6123 6983 5.839606 ACCCTATTATGTACTTCCTCTGTCC 59.160 44.000 0.00 0.00 0.00 4.02
6124 6984 6.980416 ACCCTATTATGTACTTCCTCTGTC 57.020 41.667 0.00 0.00 0.00 3.51
6125 6985 7.750947 AAACCCTATTATGTACTTCCTCTGT 57.249 36.000 0.00 0.00 0.00 3.41
6126 6986 8.893727 CAAAAACCCTATTATGTACTTCCTCTG 58.106 37.037 0.00 0.00 0.00 3.35
6127 6987 8.612145 ACAAAAACCCTATTATGTACTTCCTCT 58.388 33.333 0.00 0.00 0.00 3.69
6128 6988 8.803397 ACAAAAACCCTATTATGTACTTCCTC 57.197 34.615 0.00 0.00 0.00 3.71
6129 6989 9.676861 GTACAAAAACCCTATTATGTACTTCCT 57.323 33.333 6.62 0.00 39.78 3.36
6130 6990 8.606602 CGTACAAAAACCCTATTATGTACTTCC 58.393 37.037 10.88 0.00 40.39 3.46
6131 6991 8.606602 CCGTACAAAAACCCTATTATGTACTTC 58.393 37.037 10.88 0.00 40.39 3.01
6132 6992 8.102676 ACCGTACAAAAACCCTATTATGTACTT 58.897 33.333 10.88 0.00 40.39 2.24
6133 6993 7.623630 ACCGTACAAAAACCCTATTATGTACT 58.376 34.615 10.88 0.00 40.39 2.73
6134 6994 7.848223 ACCGTACAAAAACCCTATTATGTAC 57.152 36.000 0.00 0.00 39.60 2.90
6135 6995 8.099537 TGAACCGTACAAAAACCCTATTATGTA 58.900 33.333 0.00 0.00 0.00 2.29
6136 6996 6.941436 TGAACCGTACAAAAACCCTATTATGT 59.059 34.615 0.00 0.00 0.00 2.29
6137 6997 7.380431 TGAACCGTACAAAAACCCTATTATG 57.620 36.000 0.00 0.00 0.00 1.90
6144 7004 4.292599 GTGATTGAACCGTACAAAAACCC 58.707 43.478 0.00 0.00 0.00 4.11
6147 7007 5.838531 AAGGTGATTGAACCGTACAAAAA 57.161 34.783 0.00 0.00 45.53 1.94
6199 7059 7.371936 TGCAAGTGTAGTTGTAAGTTTTGTTT 58.628 30.769 1.82 0.00 0.00 2.83
6208 7068 4.915704 GCTTGTTGCAAGTGTAGTTGTAA 58.084 39.130 0.00 0.00 42.31 2.41
6233 7095 1.742831 GACGGTTGATGCAAGCCAATA 59.257 47.619 0.00 0.00 38.44 1.90
6234 7096 0.527565 GACGGTTGATGCAAGCCAAT 59.472 50.000 0.00 0.00 38.44 3.16
6235 7097 0.537143 AGACGGTTGATGCAAGCCAA 60.537 50.000 0.00 0.00 38.44 4.52
6255 7117 5.181690 TGGTTTCTTGTGTGCAGATTTAC 57.818 39.130 0.00 0.00 0.00 2.01
6286 7148 5.129650 AGGAGTTAGCCTCTACTTTGGATTC 59.870 44.000 0.00 0.00 40.30 2.52
6295 7157 4.198530 ACGAAGTAGGAGTTAGCCTCTAC 58.801 47.826 0.00 0.00 41.94 2.59
6319 7181 1.557443 CCACGAGTGAAGAACGGCAC 61.557 60.000 4.59 0.00 35.30 5.01
6323 7185 2.427232 TAACCCACGAGTGAAGAACG 57.573 50.000 4.59 0.00 0.00 3.95
6346 7208 5.930837 AAATCAAAACAAGAACCTGACCA 57.069 34.783 0.00 0.00 0.00 4.02
6396 7261 9.529325 CTGAGAACATAAATTACGATAAGGACA 57.471 33.333 0.00 0.00 0.00 4.02
6397 7262 9.745880 TCTGAGAACATAAATTACGATAAGGAC 57.254 33.333 0.00 0.00 0.00 3.85
6400 7265 9.967346 TCCTCTGAGAACATAAATTACGATAAG 57.033 33.333 6.17 0.00 0.00 1.73
6401 7266 9.967346 CTCCTCTGAGAACATAAATTACGATAA 57.033 33.333 6.17 0.00 41.42 1.75
6402 7267 9.350951 TCTCCTCTGAGAACATAAATTACGATA 57.649 33.333 6.17 0.00 44.62 2.92
6418 7283 4.681744 GCACAACTCTATTCTCCTCTGAG 58.318 47.826 0.00 0.00 40.17 3.35
6420 7285 3.443037 CGCACAACTCTATTCTCCTCTG 58.557 50.000 0.00 0.00 0.00 3.35
6463 7328 3.338249 ACGTGTGAATTCCCAAGAGATG 58.662 45.455 10.48 0.00 0.00 2.90
6470 7335 0.037139 CCCGTACGTGTGAATTCCCA 60.037 55.000 15.21 0.00 0.00 4.37
6483 7348 6.189677 TCAAACAAATGATGATTCCCGTAC 57.810 37.500 0.00 0.00 0.00 3.67
6494 7359 9.953565 ATGGAAAATCTCAATCAAACAAATGAT 57.046 25.926 0.00 0.00 41.74 2.45
6500 7365 8.312564 TGCATAATGGAAAATCTCAATCAAACA 58.687 29.630 0.00 0.00 0.00 2.83
6502 7367 9.320352 CATGCATAATGGAAAATCTCAATCAAA 57.680 29.630 0.00 0.00 32.10 2.69
6518 7383 3.316029 ACGATCACAACCCATGCATAATG 59.684 43.478 0.00 0.00 35.89 1.90
6521 7386 2.708216 ACGATCACAACCCATGCATA 57.292 45.000 0.00 0.00 0.00 3.14
6523 7388 1.164411 GAACGATCACAACCCATGCA 58.836 50.000 0.00 0.00 0.00 3.96
6530 7395 5.348724 TCATCAAGCTTAGAACGATCACAAC 59.651 40.000 0.00 0.00 0.00 3.32
6563 7428 1.531677 CGTATGCCAAGCCGTTTCATG 60.532 52.381 0.00 0.00 0.00 3.07
6574 7439 4.757019 TCCTAATTACCACGTATGCCAA 57.243 40.909 0.00 0.00 0.00 4.52
6579 7444 6.549433 TGTTCCTTCCTAATTACCACGTAT 57.451 37.500 0.00 0.00 0.00 3.06
6583 7448 5.812286 TCCTTGTTCCTTCCTAATTACCAC 58.188 41.667 0.00 0.00 0.00 4.16
6599 7464 1.831652 CGTCCCTCTGCCTCCTTGTT 61.832 60.000 0.00 0.00 0.00 2.83
6609 7474 5.472137 TCTTTTTAATTTCCACGTCCCTCTG 59.528 40.000 0.00 0.00 0.00 3.35
6612 7477 5.134661 TGTCTTTTTAATTTCCACGTCCCT 58.865 37.500 0.00 0.00 0.00 4.20
6672 7537 1.228894 TTCCTCTCCGGTCAGCACT 60.229 57.895 0.00 0.00 0.00 4.40
6682 7547 0.033894 ACCTCGTCTCCTTCCTCTCC 60.034 60.000 0.00 0.00 0.00 3.71
6735 7600 0.395448 AGCTCTCCCACCGTACTACC 60.395 60.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.