Multiple sequence alignment - TraesCS2A01G087100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G087100 chr2A 100.000 3173 0 0 1 3173 40553910 40557082 0.000000e+00 5860.0
1 TraesCS2A01G087100 chr2D 91.511 2297 107 29 639 2876 36576228 36578495 0.000000e+00 3081.0
2 TraesCS2A01G087100 chr2D 97.692 260 6 0 2914 3173 36580932 36581191 6.240000e-122 448.0
3 TraesCS2A01G087100 chr2D 87.535 353 20 6 1 337 36575874 36576218 1.380000e-103 387.0
4 TraesCS2A01G087100 chr2D 86.943 314 34 4 1420 1728 3751523 3751212 2.340000e-91 346.0
5 TraesCS2A01G087100 chr2D 96.667 60 1 1 2861 2919 36579669 36579728 7.240000e-17 99.0
6 TraesCS2A01G087100 chr2B 87.849 2041 123 45 644 2622 62983552 62985529 0.000000e+00 2279.0
7 TraesCS2A01G087100 chr2B 84.649 456 61 5 1354 1803 62976438 62976890 2.250000e-121 446.0
8 TraesCS2A01G087100 chr2B 86.559 372 27 6 9 364 62978701 62979065 3.840000e-104 388.0
9 TraesCS2A01G087100 chr5A 91.411 163 14 0 1884 2046 568595291 568595453 1.150000e-54 224.0
10 TraesCS2A01G087100 chr1B 89.726 146 14 1 1898 2043 82080245 82080389 5.400000e-43 185.0
11 TraesCS2A01G087100 chr4D 92.857 42 1 2 1748 1788 482937648 482937608 3.420000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G087100 chr2A 40553910 40557082 3172 False 5860.00 5860 100.00000 1 3173 1 chr2A.!!$F1 3172
1 TraesCS2A01G087100 chr2D 36575874 36581191 5317 False 1003.75 3081 93.35125 1 3173 4 chr2D.!!$F1 3172
2 TraesCS2A01G087100 chr2B 62983552 62985529 1977 False 2279.00 2279 87.84900 644 2622 1 chr2B.!!$F1 1978
3 TraesCS2A01G087100 chr2B 62976438 62979065 2627 False 417.00 446 85.60400 9 1803 2 chr2B.!!$F2 1794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 228 0.032813 CCCACTCATGATGCCCCTTT 60.033 55.0 0.00 0.0 0.0 3.11 F
352 369 0.108138 AGGCACCGCACTATGTTCTC 60.108 55.0 0.00 0.0 0.0 2.87 F
983 1040 0.185901 TGCAGGCCAGGAAAGAAAGT 59.814 50.0 5.01 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1308 0.891904 GCTTGACCGGGGCTTTAACA 60.892 55.000 6.32 0.00 0.0 2.41 R
1398 1470 1.227089 CTCCATCTCGACCCGCTTG 60.227 63.158 0.00 0.00 0.0 4.01 R
2861 2993 0.108804 TCACAAGGAACCTCGCGATC 60.109 55.000 10.36 4.05 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 1.734837 GCTAAGCTAGGGATCGCGC 60.735 63.158 0.00 0.00 0.00 6.86
129 146 4.467062 GCCGGCTCGCTTTGCTTC 62.467 66.667 22.15 0.00 0.00 3.86
144 161 3.425162 TGCTTCCCTCTCTTCTTTTCC 57.575 47.619 0.00 0.00 0.00 3.13
150 167 2.238395 CCCTCTCTTCTTTTCCTCCCTG 59.762 54.545 0.00 0.00 0.00 4.45
159 176 2.710096 TTTCCTCCCTGCCTTAATCG 57.290 50.000 0.00 0.00 0.00 3.34
171 188 0.928908 CTTAATCGTCGAGCGGTCCG 60.929 60.000 6.99 6.99 41.72 4.79
210 227 1.217057 ACCCACTCATGATGCCCCTT 61.217 55.000 0.00 0.00 0.00 3.95
211 228 0.032813 CCCACTCATGATGCCCCTTT 60.033 55.000 0.00 0.00 0.00 3.11
223 240 0.690762 GCCCCTTTGTACTCCACTCA 59.309 55.000 0.00 0.00 0.00 3.41
224 241 1.610886 GCCCCTTTGTACTCCACTCAC 60.611 57.143 0.00 0.00 0.00 3.51
225 242 1.003233 CCCCTTTGTACTCCACTCACC 59.997 57.143 0.00 0.00 0.00 4.02
226 243 1.337823 CCCTTTGTACTCCACTCACCG 60.338 57.143 0.00 0.00 0.00 4.94
227 244 1.429463 CTTTGTACTCCACTCACCGC 58.571 55.000 0.00 0.00 0.00 5.68
228 245 1.000955 CTTTGTACTCCACTCACCGCT 59.999 52.381 0.00 0.00 0.00 5.52
229 246 0.317160 TTGTACTCCACTCACCGCTG 59.683 55.000 0.00 0.00 0.00 5.18
230 247 1.446272 GTACTCCACTCACCGCTGC 60.446 63.158 0.00 0.00 0.00 5.25
242 259 2.034879 CCGCTGCTGGTTGATCGTT 61.035 57.895 0.00 0.00 0.00 3.85
262 279 4.084013 CGTTTCAAAACACTAGCTAGGGTG 60.084 45.833 28.94 19.01 39.47 4.61
265 282 3.644265 TCAAAACACTAGCTAGGGTGTGA 59.356 43.478 28.94 27.95 44.54 3.58
275 292 0.895530 TAGGGTGTGAGAGGAAAGCG 59.104 55.000 0.00 0.00 0.00 4.68
276 293 1.122019 AGGGTGTGAGAGGAAAGCGT 61.122 55.000 0.00 0.00 0.00 5.07
277 294 0.951040 GGGTGTGAGAGGAAAGCGTG 60.951 60.000 0.00 0.00 0.00 5.34
337 354 2.584064 CCATCGTGTGGCTAGGCA 59.416 61.111 16.16 16.16 42.12 4.75
338 355 1.815421 CCATCGTGTGGCTAGGCAC 60.815 63.158 35.59 35.59 42.12 5.01
340 357 3.371097 ATCGTGTGGCTAGGCACCG 62.371 63.158 37.65 35.53 32.40 4.94
342 359 4.697756 GTGTGGCTAGGCACCGCA 62.698 66.667 37.65 22.35 45.20 5.69
343 360 4.697756 TGTGGCTAGGCACCGCAC 62.698 66.667 37.65 19.49 42.63 5.34
344 361 4.394712 GTGGCTAGGCACCGCACT 62.395 66.667 33.27 0.00 37.64 4.40
345 362 2.682136 TGGCTAGGCACCGCACTA 60.682 61.111 16.16 0.00 0.00 2.74
346 363 2.063979 TGGCTAGGCACCGCACTAT 61.064 57.895 16.16 0.00 0.00 2.12
347 364 1.595382 GGCTAGGCACCGCACTATG 60.595 63.158 12.16 0.00 0.00 2.23
348 365 1.144057 GCTAGGCACCGCACTATGT 59.856 57.895 0.00 0.00 0.00 2.29
349 366 0.462047 GCTAGGCACCGCACTATGTT 60.462 55.000 0.00 0.00 0.00 2.71
350 367 1.571919 CTAGGCACCGCACTATGTTC 58.428 55.000 0.00 0.00 0.00 3.18
351 368 1.137086 CTAGGCACCGCACTATGTTCT 59.863 52.381 0.00 0.00 0.00 3.01
352 369 0.108138 AGGCACCGCACTATGTTCTC 60.108 55.000 0.00 0.00 0.00 2.87
353 370 1.421410 GGCACCGCACTATGTTCTCG 61.421 60.000 0.00 0.00 0.00 4.04
354 371 0.736325 GCACCGCACTATGTTCTCGT 60.736 55.000 0.00 0.00 0.00 4.18
355 372 1.468565 GCACCGCACTATGTTCTCGTA 60.469 52.381 0.00 0.00 0.00 3.43
356 373 2.871133 CACCGCACTATGTTCTCGTAA 58.129 47.619 0.00 0.00 0.00 3.18
357 374 3.247442 CACCGCACTATGTTCTCGTAAA 58.753 45.455 0.00 0.00 0.00 2.01
358 375 3.676172 CACCGCACTATGTTCTCGTAAAA 59.324 43.478 0.00 0.00 0.00 1.52
359 376 4.328983 CACCGCACTATGTTCTCGTAAAAT 59.671 41.667 0.00 0.00 0.00 1.82
360 377 4.933400 ACCGCACTATGTTCTCGTAAAATT 59.067 37.500 0.00 0.00 0.00 1.82
361 378 6.035220 CACCGCACTATGTTCTCGTAAAATTA 59.965 38.462 0.00 0.00 0.00 1.40
362 379 6.591062 ACCGCACTATGTTCTCGTAAAATTAA 59.409 34.615 0.00 0.00 0.00 1.40
363 380 7.279313 ACCGCACTATGTTCTCGTAAAATTAAT 59.721 33.333 0.00 0.00 0.00 1.40
364 381 7.582679 CCGCACTATGTTCTCGTAAAATTAATG 59.417 37.037 0.00 0.00 0.00 1.90
365 382 8.114290 CGCACTATGTTCTCGTAAAATTAATGT 58.886 33.333 0.00 0.00 0.00 2.71
366 383 9.422196 GCACTATGTTCTCGTAAAATTAATGTC 57.578 33.333 0.00 0.00 0.00 3.06
371 388 9.988350 ATGTTCTCGTAAAATTAATGTCATGTC 57.012 29.630 0.00 0.00 0.00 3.06
372 389 8.166066 TGTTCTCGTAAAATTAATGTCATGTCG 58.834 33.333 0.00 0.00 0.00 4.35
373 390 6.701937 TCTCGTAAAATTAATGTCATGTCGC 58.298 36.000 0.00 0.00 0.00 5.19
374 391 5.485831 TCGTAAAATTAATGTCATGTCGCG 58.514 37.500 0.00 0.00 0.00 5.87
375 392 5.288952 TCGTAAAATTAATGTCATGTCGCGA 59.711 36.000 3.71 3.71 0.00 5.87
376 393 5.954922 CGTAAAATTAATGTCATGTCGCGAA 59.045 36.000 12.06 1.13 0.00 4.70
377 394 6.137000 CGTAAAATTAATGTCATGTCGCGAAG 59.863 38.462 12.06 3.91 0.00 3.79
395 412 3.924238 GCAACATGCGGTTAGATGG 57.076 52.632 0.00 0.00 37.72 3.51
396 413 1.094785 GCAACATGCGGTTAGATGGT 58.905 50.000 0.00 0.00 37.72 3.55
397 414 1.472480 GCAACATGCGGTTAGATGGTT 59.528 47.619 0.00 0.00 37.72 3.67
398 415 2.680841 GCAACATGCGGTTAGATGGTTA 59.319 45.455 0.00 0.00 37.72 2.85
399 416 3.242739 GCAACATGCGGTTAGATGGTTAG 60.243 47.826 0.00 0.00 37.72 2.34
400 417 4.188462 CAACATGCGGTTAGATGGTTAGA 58.812 43.478 0.00 0.00 37.72 2.10
401 418 4.481368 ACATGCGGTTAGATGGTTAGAA 57.519 40.909 0.00 0.00 0.00 2.10
402 419 4.442706 ACATGCGGTTAGATGGTTAGAAG 58.557 43.478 0.00 0.00 0.00 2.85
403 420 4.161565 ACATGCGGTTAGATGGTTAGAAGA 59.838 41.667 0.00 0.00 0.00 2.87
404 421 4.811969 TGCGGTTAGATGGTTAGAAGAA 57.188 40.909 0.00 0.00 0.00 2.52
405 422 4.501071 TGCGGTTAGATGGTTAGAAGAAC 58.499 43.478 0.00 0.00 0.00 3.01
406 423 4.020928 TGCGGTTAGATGGTTAGAAGAACA 60.021 41.667 0.00 0.00 0.00 3.18
407 424 4.933400 GCGGTTAGATGGTTAGAAGAACAA 59.067 41.667 0.00 0.00 0.00 2.83
408 425 5.585047 GCGGTTAGATGGTTAGAAGAACAAT 59.415 40.000 0.00 0.00 0.00 2.71
409 426 6.456988 GCGGTTAGATGGTTAGAAGAACAATG 60.457 42.308 0.00 0.00 0.00 2.82
410 427 6.594159 CGGTTAGATGGTTAGAAGAACAATGT 59.406 38.462 0.00 0.00 0.00 2.71
411 428 7.119262 CGGTTAGATGGTTAGAAGAACAATGTT 59.881 37.037 0.00 0.00 0.00 2.71
412 429 8.237267 GGTTAGATGGTTAGAAGAACAATGTTG 58.763 37.037 2.20 0.00 0.00 3.33
413 430 8.784043 GTTAGATGGTTAGAAGAACAATGTTGT 58.216 33.333 2.20 0.00 44.72 3.32
428 445 7.581213 ACAATGTTGTTCCAGTTTATCAGAA 57.419 32.000 0.00 0.00 38.47 3.02
429 446 8.006298 ACAATGTTGTTCCAGTTTATCAGAAA 57.994 30.769 0.00 0.00 38.47 2.52
430 447 7.920682 ACAATGTTGTTCCAGTTTATCAGAAAC 59.079 33.333 0.00 0.00 38.47 2.78
431 448 6.385649 TGTTGTTCCAGTTTATCAGAAACC 57.614 37.500 0.00 0.00 0.00 3.27
432 449 5.888724 TGTTGTTCCAGTTTATCAGAAACCA 59.111 36.000 0.00 0.00 0.00 3.67
433 450 6.378564 TGTTGTTCCAGTTTATCAGAAACCAA 59.621 34.615 0.00 0.00 0.00 3.67
434 451 7.093727 TGTTGTTCCAGTTTATCAGAAACCAAA 60.094 33.333 0.00 0.00 0.00 3.28
435 452 7.595819 TGTTCCAGTTTATCAGAAACCAAAT 57.404 32.000 0.00 0.00 0.00 2.32
436 453 7.657336 TGTTCCAGTTTATCAGAAACCAAATC 58.343 34.615 0.00 0.00 0.00 2.17
437 454 7.505585 TGTTCCAGTTTATCAGAAACCAAATCT 59.494 33.333 0.00 0.00 0.00 2.40
438 455 8.360390 GTTCCAGTTTATCAGAAACCAAATCTT 58.640 33.333 0.00 0.00 0.00 2.40
439 456 7.885297 TCCAGTTTATCAGAAACCAAATCTTG 58.115 34.615 0.00 0.00 0.00 3.02
440 457 7.723616 TCCAGTTTATCAGAAACCAAATCTTGA 59.276 33.333 0.00 0.00 0.00 3.02
441 458 8.359642 CCAGTTTATCAGAAACCAAATCTTGAA 58.640 33.333 0.00 0.00 0.00 2.69
442 459 9.403110 CAGTTTATCAGAAACCAAATCTTGAAG 57.597 33.333 0.00 0.00 0.00 3.02
443 460 8.084684 AGTTTATCAGAAACCAAATCTTGAAGC 58.915 33.333 0.00 0.00 0.00 3.86
444 461 7.765695 TTATCAGAAACCAAATCTTGAAGCT 57.234 32.000 0.00 0.00 0.00 3.74
445 462 5.695851 TCAGAAACCAAATCTTGAAGCTC 57.304 39.130 0.00 0.00 0.00 4.09
446 463 4.214119 TCAGAAACCAAATCTTGAAGCTCG 59.786 41.667 0.00 0.00 0.00 5.03
447 464 2.997485 AACCAAATCTTGAAGCTCGC 57.003 45.000 0.00 0.00 0.00 5.03
448 465 0.798776 ACCAAATCTTGAAGCTCGCG 59.201 50.000 0.00 0.00 0.00 5.87
449 466 0.798776 CCAAATCTTGAAGCTCGCGT 59.201 50.000 5.77 0.00 0.00 6.01
450 467 1.197721 CCAAATCTTGAAGCTCGCGTT 59.802 47.619 5.77 0.00 0.00 4.84
451 468 2.350772 CCAAATCTTGAAGCTCGCGTTT 60.351 45.455 5.77 0.00 0.00 3.60
452 469 2.601481 AATCTTGAAGCTCGCGTTTG 57.399 45.000 5.77 0.00 0.00 2.93
453 470 1.512926 ATCTTGAAGCTCGCGTTTGT 58.487 45.000 5.77 0.00 0.00 2.83
454 471 1.295792 TCTTGAAGCTCGCGTTTGTT 58.704 45.000 5.77 0.00 0.00 2.83
455 472 1.260561 TCTTGAAGCTCGCGTTTGTTC 59.739 47.619 5.77 6.17 0.00 3.18
456 473 1.261619 CTTGAAGCTCGCGTTTGTTCT 59.738 47.619 5.77 0.00 0.00 3.01
457 474 0.581529 TGAAGCTCGCGTTTGTTCTG 59.418 50.000 5.77 0.00 0.00 3.02
458 475 0.859232 GAAGCTCGCGTTTGTTCTGA 59.141 50.000 5.77 0.00 0.00 3.27
459 476 1.260561 GAAGCTCGCGTTTGTTCTGAA 59.739 47.619 5.77 0.00 0.00 3.02
460 477 1.512926 AGCTCGCGTTTGTTCTGAAT 58.487 45.000 5.77 0.00 0.00 2.57
461 478 1.873591 AGCTCGCGTTTGTTCTGAATT 59.126 42.857 5.77 0.00 0.00 2.17
462 479 2.096218 AGCTCGCGTTTGTTCTGAATTC 60.096 45.455 5.77 0.00 0.00 2.17
463 480 2.486128 CTCGCGTTTGTTCTGAATTCG 58.514 47.619 5.77 0.00 0.00 3.34
464 481 2.128821 TCGCGTTTGTTCTGAATTCGA 58.871 42.857 5.77 0.00 0.00 3.71
465 482 2.734606 TCGCGTTTGTTCTGAATTCGAT 59.265 40.909 5.77 0.00 0.00 3.59
466 483 3.185594 TCGCGTTTGTTCTGAATTCGATT 59.814 39.130 5.77 0.00 0.00 3.34
467 484 3.906008 CGCGTTTGTTCTGAATTCGATTT 59.094 39.130 0.00 0.00 0.00 2.17
468 485 4.027991 CGCGTTTGTTCTGAATTCGATTTC 59.972 41.667 12.10 12.10 0.00 2.17
469 486 4.320953 GCGTTTGTTCTGAATTCGATTTCC 59.679 41.667 15.43 3.22 0.00 3.13
470 487 4.549599 CGTTTGTTCTGAATTCGATTTCCG 59.450 41.667 15.43 10.41 40.25 4.30
471 488 4.678509 TTGTTCTGAATTCGATTTCCGG 57.321 40.909 15.43 0.00 39.14 5.14
472 489 2.418628 TGTTCTGAATTCGATTTCCGGC 59.581 45.455 15.43 8.12 39.14 6.13
473 490 1.286501 TCTGAATTCGATTTCCGGCG 58.713 50.000 15.43 0.00 39.14 6.46
474 491 1.134936 TCTGAATTCGATTTCCGGCGA 60.135 47.619 9.30 0.00 39.14 5.54
475 492 1.867233 CTGAATTCGATTTCCGGCGAT 59.133 47.619 9.30 0.00 39.14 4.58
476 493 3.057019 CTGAATTCGATTTCCGGCGATA 58.943 45.455 9.30 0.00 39.14 2.92
477 494 3.659786 TGAATTCGATTTCCGGCGATAT 58.340 40.909 9.30 0.00 39.14 1.63
478 495 3.431912 TGAATTCGATTTCCGGCGATATG 59.568 43.478 9.30 0.00 39.14 1.78
479 496 1.144969 TTCGATTTCCGGCGATATGC 58.855 50.000 9.30 0.00 45.38 3.14
492 509 3.243336 GCGATATGCGTTTAGTAGGAGG 58.757 50.000 0.00 0.00 43.41 4.30
493 510 3.057736 GCGATATGCGTTTAGTAGGAGGA 60.058 47.826 0.00 0.00 43.41 3.71
494 511 4.724303 CGATATGCGTTTAGTAGGAGGAG 58.276 47.826 0.00 0.00 34.64 3.69
495 512 4.454847 CGATATGCGTTTAGTAGGAGGAGA 59.545 45.833 0.00 0.00 34.64 3.71
496 513 5.124138 CGATATGCGTTTAGTAGGAGGAGAT 59.876 44.000 0.00 0.00 34.64 2.75
497 514 4.592485 ATGCGTTTAGTAGGAGGAGATG 57.408 45.455 0.00 0.00 0.00 2.90
498 515 3.362706 TGCGTTTAGTAGGAGGAGATGT 58.637 45.455 0.00 0.00 0.00 3.06
499 516 3.767673 TGCGTTTAGTAGGAGGAGATGTT 59.232 43.478 0.00 0.00 0.00 2.71
500 517 4.142227 TGCGTTTAGTAGGAGGAGATGTTC 60.142 45.833 0.00 0.00 0.00 3.18
501 518 4.098196 GCGTTTAGTAGGAGGAGATGTTCT 59.902 45.833 0.00 0.00 0.00 3.01
502 519 5.733937 GCGTTTAGTAGGAGGAGATGTTCTC 60.734 48.000 0.00 0.00 42.66 2.87
503 520 5.504337 CGTTTAGTAGGAGGAGATGTTCTCG 60.504 48.000 0.00 0.00 44.28 4.04
504 521 3.655615 AGTAGGAGGAGATGTTCTCGT 57.344 47.619 0.00 0.00 44.28 4.18
505 522 3.970842 AGTAGGAGGAGATGTTCTCGTT 58.029 45.455 0.00 0.00 44.28 3.85
506 523 3.697045 AGTAGGAGGAGATGTTCTCGTTG 59.303 47.826 0.00 0.00 44.28 4.10
507 524 2.808919 AGGAGGAGATGTTCTCGTTGA 58.191 47.619 1.70 0.00 44.28 3.18
508 525 2.494073 AGGAGGAGATGTTCTCGTTGAC 59.506 50.000 1.70 0.00 44.28 3.18
509 526 2.494073 GGAGGAGATGTTCTCGTTGACT 59.506 50.000 1.70 0.00 44.28 3.41
510 527 3.695060 GGAGGAGATGTTCTCGTTGACTA 59.305 47.826 1.70 0.00 44.28 2.59
511 528 4.439016 GGAGGAGATGTTCTCGTTGACTAC 60.439 50.000 1.70 0.00 44.28 2.73
531 548 3.489180 CGAGACACGTAGGATGACTTT 57.511 47.619 0.00 0.00 37.22 2.66
532 549 3.172050 CGAGACACGTAGGATGACTTTG 58.828 50.000 0.00 0.00 37.22 2.77
533 550 3.366070 CGAGACACGTAGGATGACTTTGT 60.366 47.826 0.00 0.00 37.22 2.83
534 551 4.142752 CGAGACACGTAGGATGACTTTGTA 60.143 45.833 0.00 0.00 37.22 2.41
535 552 5.618418 CGAGACACGTAGGATGACTTTGTAA 60.618 44.000 0.00 0.00 37.22 2.41
536 553 6.092955 AGACACGTAGGATGACTTTGTAAA 57.907 37.500 0.00 0.00 0.00 2.01
537 554 6.518493 AGACACGTAGGATGACTTTGTAAAA 58.482 36.000 0.00 0.00 0.00 1.52
538 555 7.159372 AGACACGTAGGATGACTTTGTAAAAT 58.841 34.615 0.00 0.00 0.00 1.82
539 556 7.331193 AGACACGTAGGATGACTTTGTAAAATC 59.669 37.037 0.00 0.00 0.00 2.17
540 557 6.932400 ACACGTAGGATGACTTTGTAAAATCA 59.068 34.615 0.00 0.00 0.00 2.57
541 558 7.095355 ACACGTAGGATGACTTTGTAAAATCAC 60.095 37.037 0.00 0.00 0.00 3.06
542 559 6.932400 ACGTAGGATGACTTTGTAAAATCACA 59.068 34.615 0.00 0.00 0.00 3.58
543 560 7.606456 ACGTAGGATGACTTTGTAAAATCACAT 59.394 33.333 0.00 0.00 0.00 3.21
544 561 7.904977 CGTAGGATGACTTTGTAAAATCACATG 59.095 37.037 0.00 0.00 0.00 3.21
545 562 8.946085 GTAGGATGACTTTGTAAAATCACATGA 58.054 33.333 0.00 0.00 0.00 3.07
546 563 8.585471 AGGATGACTTTGTAAAATCACATGAT 57.415 30.769 0.00 0.00 36.07 2.45
547 564 8.464404 AGGATGACTTTGTAAAATCACATGATG 58.536 33.333 0.00 0.00 34.49 3.07
548 565 8.461222 GGATGACTTTGTAAAATCACATGATGA 58.539 33.333 0.00 0.00 43.13 2.92
549 566 9.282247 GATGACTTTGTAAAATCACATGATGAC 57.718 33.333 0.00 0.00 41.24 3.06
550 567 8.164058 TGACTTTGTAAAATCACATGATGACA 57.836 30.769 0.00 0.00 41.24 3.58
551 568 8.795513 TGACTTTGTAAAATCACATGATGACAT 58.204 29.630 0.00 0.00 41.24 3.06
561 578 3.898517 CATGATGACATGCCAGCTTAG 57.101 47.619 0.00 0.00 45.51 2.18
562 579 3.211865 CATGATGACATGCCAGCTTAGT 58.788 45.455 0.00 0.00 45.51 2.24
563 580 2.910199 TGATGACATGCCAGCTTAGTC 58.090 47.619 0.00 0.00 0.00 2.59
564 581 2.502947 TGATGACATGCCAGCTTAGTCT 59.497 45.455 0.00 0.00 0.00 3.24
565 582 3.054875 TGATGACATGCCAGCTTAGTCTT 60.055 43.478 0.00 5.17 0.00 3.01
566 583 3.423539 TGACATGCCAGCTTAGTCTTT 57.576 42.857 0.00 0.00 0.00 2.52
567 584 3.338249 TGACATGCCAGCTTAGTCTTTC 58.662 45.455 0.00 0.00 0.00 2.62
568 585 2.349886 GACATGCCAGCTTAGTCTTTCG 59.650 50.000 0.00 0.00 0.00 3.46
569 586 1.667724 CATGCCAGCTTAGTCTTTCGG 59.332 52.381 0.00 0.00 0.00 4.30
570 587 0.973632 TGCCAGCTTAGTCTTTCGGA 59.026 50.000 0.00 0.00 0.00 4.55
571 588 1.066858 TGCCAGCTTAGTCTTTCGGAG 60.067 52.381 0.00 0.00 0.00 4.63
572 589 1.204941 GCCAGCTTAGTCTTTCGGAGA 59.795 52.381 0.00 0.00 0.00 3.71
573 590 2.159028 GCCAGCTTAGTCTTTCGGAGAT 60.159 50.000 0.00 0.00 36.61 2.75
574 591 3.452474 CCAGCTTAGTCTTTCGGAGATG 58.548 50.000 0.00 0.00 36.61 2.90
575 592 2.863137 CAGCTTAGTCTTTCGGAGATGC 59.137 50.000 0.00 0.00 36.61 3.91
576 593 2.763448 AGCTTAGTCTTTCGGAGATGCT 59.237 45.455 0.00 0.00 36.61 3.79
577 594 3.120041 GCTTAGTCTTTCGGAGATGCTC 58.880 50.000 0.00 0.00 36.61 4.26
578 595 3.367607 CTTAGTCTTTCGGAGATGCTCG 58.632 50.000 0.00 0.00 36.61 5.03
579 596 1.178276 AGTCTTTCGGAGATGCTCGT 58.822 50.000 0.00 0.00 36.61 4.18
580 597 2.366533 AGTCTTTCGGAGATGCTCGTA 58.633 47.619 0.00 0.00 36.61 3.43
581 598 2.356382 AGTCTTTCGGAGATGCTCGTAG 59.644 50.000 0.00 0.00 36.61 3.51
582 599 1.676529 TCTTTCGGAGATGCTCGTAGG 59.323 52.381 0.00 0.00 35.04 3.18
583 600 0.744874 TTTCGGAGATGCTCGTAGGG 59.255 55.000 0.00 0.00 35.04 3.53
584 601 1.107538 TTCGGAGATGCTCGTAGGGG 61.108 60.000 0.00 0.00 35.04 4.79
585 602 1.828660 CGGAGATGCTCGTAGGGGT 60.829 63.158 0.00 0.00 0.00 4.95
586 603 0.536687 CGGAGATGCTCGTAGGGGTA 60.537 60.000 0.00 0.00 0.00 3.69
587 604 1.887088 CGGAGATGCTCGTAGGGGTAT 60.887 57.143 0.00 0.00 0.00 2.73
588 605 1.546476 GGAGATGCTCGTAGGGGTATG 59.454 57.143 0.00 0.00 0.00 2.39
589 606 2.240279 GAGATGCTCGTAGGGGTATGT 58.760 52.381 0.00 0.00 0.00 2.29
590 607 1.964223 AGATGCTCGTAGGGGTATGTG 59.036 52.381 0.00 0.00 0.00 3.21
591 608 1.687123 GATGCTCGTAGGGGTATGTGT 59.313 52.381 0.00 0.00 0.00 3.72
592 609 0.821517 TGCTCGTAGGGGTATGTGTG 59.178 55.000 0.00 0.00 0.00 3.82
593 610 0.822164 GCTCGTAGGGGTATGTGTGT 59.178 55.000 0.00 0.00 0.00 3.72
594 611 1.470979 GCTCGTAGGGGTATGTGTGTG 60.471 57.143 0.00 0.00 0.00 3.82
595 612 0.533491 TCGTAGGGGTATGTGTGTGC 59.467 55.000 0.00 0.00 0.00 4.57
596 613 0.248012 CGTAGGGGTATGTGTGTGCA 59.752 55.000 0.00 0.00 0.00 4.57
597 614 1.134521 CGTAGGGGTATGTGTGTGCAT 60.135 52.381 0.00 0.00 0.00 3.96
598 615 2.679639 CGTAGGGGTATGTGTGTGCATT 60.680 50.000 0.00 0.00 0.00 3.56
599 616 2.128771 AGGGGTATGTGTGTGCATTC 57.871 50.000 0.00 0.00 0.00 2.67
600 617 0.732571 GGGGTATGTGTGTGCATTCG 59.267 55.000 0.00 0.00 0.00 3.34
601 618 1.448985 GGGTATGTGTGTGCATTCGT 58.551 50.000 0.00 0.00 0.00 3.85
602 619 2.623535 GGGTATGTGTGTGCATTCGTA 58.376 47.619 0.00 0.00 0.00 3.43
603 620 2.607635 GGGTATGTGTGTGCATTCGTAG 59.392 50.000 0.00 0.00 0.00 3.51
604 621 2.607635 GGTATGTGTGTGCATTCGTAGG 59.392 50.000 0.00 0.00 0.00 3.18
605 622 1.737838 ATGTGTGTGCATTCGTAGGG 58.262 50.000 0.00 0.00 0.00 3.53
606 623 0.394938 TGTGTGTGCATTCGTAGGGT 59.605 50.000 0.00 0.00 0.00 4.34
607 624 1.202710 TGTGTGTGCATTCGTAGGGTT 60.203 47.619 0.00 0.00 0.00 4.11
608 625 1.196808 GTGTGTGCATTCGTAGGGTTG 59.803 52.381 0.00 0.00 0.00 3.77
609 626 1.070914 TGTGTGCATTCGTAGGGTTGA 59.929 47.619 0.00 0.00 0.00 3.18
610 627 1.732259 GTGTGCATTCGTAGGGTTGAG 59.268 52.381 0.00 0.00 0.00 3.02
611 628 1.346395 TGTGCATTCGTAGGGTTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
612 629 1.732259 GTGCATTCGTAGGGTTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
613 630 1.346395 TGCATTCGTAGGGTTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
614 631 2.563620 TGCATTCGTAGGGTTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
615 632 3.196901 TGCATTCGTAGGGTTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
616 633 4.403113 TGCATTCGTAGGGTTGAGTGTATA 59.597 41.667 0.00 0.00 0.00 1.47
617 634 4.743644 GCATTCGTAGGGTTGAGTGTATAC 59.256 45.833 0.00 0.00 0.00 1.47
618 635 5.680408 GCATTCGTAGGGTTGAGTGTATACA 60.680 44.000 0.08 0.08 0.00 2.29
619 636 6.513180 CATTCGTAGGGTTGAGTGTATACAT 58.487 40.000 9.18 0.00 0.00 2.29
620 637 5.509716 TCGTAGGGTTGAGTGTATACATG 57.490 43.478 9.18 0.00 0.00 3.21
621 638 4.951715 TCGTAGGGTTGAGTGTATACATGT 59.048 41.667 9.18 2.69 0.00 3.21
622 639 6.121590 TCGTAGGGTTGAGTGTATACATGTA 58.878 40.000 9.18 8.27 0.00 2.29
623 640 6.774170 TCGTAGGGTTGAGTGTATACATGTAT 59.226 38.462 21.57 21.57 0.00 2.29
624 641 6.861572 CGTAGGGTTGAGTGTATACATGTATG 59.138 42.308 25.48 2.07 0.00 2.39
625 642 7.255346 CGTAGGGTTGAGTGTATACATGTATGA 60.255 40.741 25.48 11.17 0.00 2.15
626 643 7.055667 AGGGTTGAGTGTATACATGTATGAG 57.944 40.000 25.48 0.00 0.00 2.90
627 644 5.696724 GGGTTGAGTGTATACATGTATGAGC 59.303 44.000 25.48 16.17 0.00 4.26
628 645 5.402568 GGTTGAGTGTATACATGTATGAGCG 59.597 44.000 25.48 0.00 0.00 5.03
629 646 5.767816 TGAGTGTATACATGTATGAGCGT 57.232 39.130 25.48 8.55 0.00 5.07
630 647 6.144078 TGAGTGTATACATGTATGAGCGTT 57.856 37.500 25.48 8.44 0.00 4.84
631 648 6.569780 TGAGTGTATACATGTATGAGCGTTT 58.430 36.000 25.48 7.06 0.00 3.60
632 649 6.475402 TGAGTGTATACATGTATGAGCGTTTG 59.525 38.462 25.48 0.00 0.00 2.93
633 650 6.338146 AGTGTATACATGTATGAGCGTTTGT 58.662 36.000 25.48 1.41 0.00 2.83
634 651 6.255670 AGTGTATACATGTATGAGCGTTTGTG 59.744 38.462 25.48 0.00 0.00 3.33
635 652 6.035650 GTGTATACATGTATGAGCGTTTGTGT 59.964 38.462 25.48 0.71 0.00 3.72
636 653 5.718649 ATACATGTATGAGCGTTTGTGTC 57.281 39.130 17.60 0.00 0.00 3.67
637 654 2.411748 ACATGTATGAGCGTTTGTGTCG 59.588 45.455 0.00 0.00 0.00 4.35
638 655 1.424403 TGTATGAGCGTTTGTGTCGG 58.576 50.000 0.00 0.00 0.00 4.79
639 656 1.269883 TGTATGAGCGTTTGTGTCGGT 60.270 47.619 0.00 0.00 41.60 4.69
640 657 2.030096 TGTATGAGCGTTTGTGTCGGTA 60.030 45.455 0.00 0.00 39.08 4.02
641 658 2.157834 ATGAGCGTTTGTGTCGGTAA 57.842 45.000 0.00 0.00 39.08 2.85
767 784 2.356227 GGGTCTCCATCCTTCTTTGACC 60.356 54.545 0.00 0.00 41.02 4.02
768 785 2.622436 GTCTCCATCCTTCTTTGACCG 58.378 52.381 0.00 0.00 0.00 4.79
769 786 2.233922 GTCTCCATCCTTCTTTGACCGA 59.766 50.000 0.00 0.00 0.00 4.69
770 787 3.107601 TCTCCATCCTTCTTTGACCGAT 58.892 45.455 0.00 0.00 0.00 4.18
771 788 3.519510 TCTCCATCCTTCTTTGACCGATT 59.480 43.478 0.00 0.00 0.00 3.34
772 789 4.714802 TCTCCATCCTTCTTTGACCGATTA 59.285 41.667 0.00 0.00 0.00 1.75
774 791 5.183228 TCCATCCTTCTTTGACCGATTAAC 58.817 41.667 0.00 0.00 0.00 2.01
775 792 4.335594 CCATCCTTCTTTGACCGATTAACC 59.664 45.833 0.00 0.00 0.00 2.85
793 811 1.270147 ACCTAATCGGCCGAACTATGC 60.270 52.381 34.66 0.00 35.61 3.14
878 898 1.821753 CCCTCTCTCCGCCTACATATG 59.178 57.143 0.00 0.00 0.00 1.78
962 1000 0.391130 AGTTCTCGCCGCAAAGCATA 60.391 50.000 0.00 0.00 0.00 3.14
963 1001 0.247695 GTTCTCGCCGCAAAGCATAC 60.248 55.000 0.00 0.00 0.00 2.39
983 1040 0.185901 TGCAGGCCAGGAAAGAAAGT 59.814 50.000 5.01 0.00 0.00 2.66
993 1050 5.249420 CCAGGAAAGAAAGTAAGAAGGGAG 58.751 45.833 0.00 0.00 0.00 4.30
1128 1197 3.684628 TTCCTCCCCTCCTCGCCT 61.685 66.667 0.00 0.00 0.00 5.52
1228 1300 3.391382 CCGCGGACCCTTCCTCTT 61.391 66.667 24.07 0.00 40.23 2.85
1229 1301 2.184579 CGCGGACCCTTCCTCTTC 59.815 66.667 0.00 0.00 40.23 2.87
1230 1302 2.585153 GCGGACCCTTCCTCTTCC 59.415 66.667 0.00 0.00 40.23 3.46
1231 1303 3.032667 GCGGACCCTTCCTCTTCCC 62.033 68.421 0.00 0.00 40.23 3.97
1234 1306 1.275421 GGACCCTTCCTCTTCCCCTG 61.275 65.000 0.00 0.00 39.13 4.45
1236 1308 1.617839 CCCTTCCTCTTCCCCTGCT 60.618 63.158 0.00 0.00 0.00 4.24
1238 1310 1.204113 CCTTCCTCTTCCCCTGCTGT 61.204 60.000 0.00 0.00 0.00 4.40
1242 1314 2.344592 TCCTCTTCCCCTGCTGTTAAA 58.655 47.619 0.00 0.00 0.00 1.52
1551 1623 3.077556 ATCGTGGCGGAGGAGCTT 61.078 61.111 0.00 0.00 37.29 3.74
1566 1638 4.116328 CTTGAGAGGTCGGCGCGA 62.116 66.667 12.10 0.00 0.00 5.87
1636 1714 1.074423 ACGGACGAGGAGTTCTCCA 59.926 57.895 19.28 0.00 39.30 3.86
1797 1875 3.359523 CTCACCGACGACCACCGA 61.360 66.667 0.00 0.00 41.76 4.69
1839 1917 2.656651 CGGATCGAGGCGCTGAAG 60.657 66.667 7.64 0.00 0.00 3.02
2027 2105 2.282462 GTGGGACAAGGTGGGCAG 60.282 66.667 0.00 0.00 44.16 4.85
2178 2256 1.002251 CGTCCTCTCCGATAAGACTGC 60.002 57.143 0.00 0.00 0.00 4.40
2230 2314 2.398498 ACACGCGAGAAGATATGCATC 58.602 47.619 15.93 0.00 0.00 3.91
2231 2315 1.384742 CACGCGAGAAGATATGCATCG 59.615 52.381 15.93 0.00 36.20 3.84
2232 2316 0.987715 CGCGAGAAGATATGCATCGG 59.012 55.000 0.19 0.00 36.20 4.18
2287 2374 2.795470 GAGAGCTTTTTGACGTCGTCTT 59.205 45.455 24.75 3.51 33.15 3.01
2376 2471 7.444629 AATAATCATCATCCGGTTGAGATTG 57.555 36.000 28.21 20.30 31.72 2.67
2378 2473 2.093021 TCATCATCCGGTTGAGATTGCA 60.093 45.455 19.48 3.06 0.00 4.08
2387 2482 3.620488 GGTTGAGATTGCAATCACCCTA 58.380 45.455 34.59 19.57 37.89 3.53
2410 2506 7.769044 CCTAGACGGGAATAATCTTCTGAAAAA 59.231 37.037 0.00 0.00 0.00 1.94
2439 2535 5.755409 TCAGTTAAAAGGGCAGAGATGTA 57.245 39.130 0.00 0.00 0.00 2.29
2508 2619 2.565868 GTGCAACACACGCAAAGTC 58.434 52.632 0.00 0.00 41.97 3.01
2539 2650 5.032220 CCACTCCAAAACGAACAAAAGTAC 58.968 41.667 0.00 0.00 0.00 2.73
2642 2759 0.814010 GTTCGAGGGTGCACAAGTGT 60.814 55.000 20.43 0.00 0.00 3.55
2660 2777 1.669760 TGCCGCGTAAACCAGAAGG 60.670 57.895 4.92 0.00 42.21 3.46
2737 2869 5.757808 GCCACTTTGATTTAAACAACCACAT 59.242 36.000 0.00 0.00 0.00 3.21
2771 2903 0.249031 AAGCAAAACAACTCTGCCGC 60.249 50.000 0.00 0.00 36.73 6.53
2791 2923 1.649664 CCTCTGCTCATGGAAAGTCG 58.350 55.000 0.00 0.00 0.00 4.18
2832 2964 3.857157 TCAAAACCTCTGCCAACTAGT 57.143 42.857 0.00 0.00 0.00 2.57
2833 2965 4.967084 TCAAAACCTCTGCCAACTAGTA 57.033 40.909 0.00 0.00 0.00 1.82
2834 2966 4.894784 TCAAAACCTCTGCCAACTAGTAG 58.105 43.478 0.00 0.00 0.00 2.57
2846 2978 4.465305 GCCAACTAGTAGAAGACTAACCCA 59.535 45.833 3.59 0.00 40.23 4.51
2886 4209 3.738281 CGCGAGGTTCCTTGTGATAGAAT 60.738 47.826 12.82 0.00 31.49 2.40
3028 6892 1.815003 GGGATTGCAGTTCTGGTTCTG 59.185 52.381 1.97 0.00 35.12 3.02
3142 7006 4.580580 GGGAAGGAATAACATGGATGACAC 59.419 45.833 0.00 0.00 0.00 3.67
3143 7007 5.440610 GGAAGGAATAACATGGATGACACT 58.559 41.667 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.090057 GGAAGCTGCCGTTGTCGC 62.090 66.667 0.00 0.00 35.54 5.19
116 117 1.365368 GAGAGGGAAGCAAAGCGAGC 61.365 60.000 0.00 0.00 0.00 5.03
117 118 0.248843 AGAGAGGGAAGCAAAGCGAG 59.751 55.000 0.00 0.00 0.00 5.03
129 146 2.238395 CAGGGAGGAAAAGAAGAGAGGG 59.762 54.545 0.00 0.00 0.00 4.30
144 161 0.744874 TCGACGATTAAGGCAGGGAG 59.255 55.000 0.00 0.00 0.00 4.30
190 207 1.152881 GGGGCATCATGAGTGGGTC 60.153 63.158 0.09 0.00 0.00 4.46
191 208 1.217057 AAGGGGCATCATGAGTGGGT 61.217 55.000 0.09 0.00 0.00 4.51
210 227 0.317160 CAGCGGTGAGTGGAGTACAA 59.683 55.000 9.50 0.00 0.00 2.41
211 228 1.964448 CAGCGGTGAGTGGAGTACA 59.036 57.895 9.50 0.00 0.00 2.90
223 240 2.434884 CGATCAACCAGCAGCGGT 60.435 61.111 3.38 3.38 42.71 5.68
224 241 1.577328 AAACGATCAACCAGCAGCGG 61.577 55.000 0.00 2.15 0.00 5.52
225 242 0.179215 GAAACGATCAACCAGCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
226 243 0.874390 TGAAACGATCAACCAGCAGC 59.126 50.000 0.00 0.00 34.30 5.25
242 259 4.101898 TCACACCCTAGCTAGTGTTTTGAA 59.898 41.667 19.31 2.57 44.65 2.69
262 279 2.035442 GCCCACGCTTTCCTCTCAC 61.035 63.158 0.00 0.00 0.00 3.51
265 282 4.394712 CCGCCCACGCTTTCCTCT 62.395 66.667 0.00 0.00 38.22 3.69
321 338 1.815421 GGTGCCTAGCCACACGATG 60.815 63.158 6.15 0.00 37.68 3.84
337 354 3.581024 TTTACGAGAACATAGTGCGGT 57.419 42.857 0.00 0.00 0.00 5.68
338 355 5.464965 AATTTTACGAGAACATAGTGCGG 57.535 39.130 0.00 0.00 0.00 5.69
340 357 9.422196 GACATTAATTTTACGAGAACATAGTGC 57.578 33.333 0.00 0.00 0.00 4.40
345 362 9.988350 GACATGACATTAATTTTACGAGAACAT 57.012 29.630 0.00 0.00 0.00 2.71
346 363 8.166066 CGACATGACATTAATTTTACGAGAACA 58.834 33.333 0.00 0.00 0.00 3.18
347 364 7.162062 GCGACATGACATTAATTTTACGAGAAC 59.838 37.037 0.00 0.00 0.00 3.01
348 365 7.177407 GCGACATGACATTAATTTTACGAGAA 58.823 34.615 0.00 0.00 0.00 2.87
349 366 6.507299 CGCGACATGACATTAATTTTACGAGA 60.507 38.462 0.00 0.00 0.00 4.04
350 367 5.611596 CGCGACATGACATTAATTTTACGAG 59.388 40.000 0.00 0.00 0.00 4.18
351 368 5.288952 TCGCGACATGACATTAATTTTACGA 59.711 36.000 3.71 0.00 0.00 3.43
352 369 5.485831 TCGCGACATGACATTAATTTTACG 58.514 37.500 3.71 0.00 0.00 3.18
353 370 6.076092 GCTTCGCGACATGACATTAATTTTAC 60.076 38.462 9.15 0.00 0.00 2.01
354 371 5.963004 GCTTCGCGACATGACATTAATTTTA 59.037 36.000 9.15 0.00 0.00 1.52
355 372 4.793216 GCTTCGCGACATGACATTAATTTT 59.207 37.500 9.15 0.00 0.00 1.82
356 373 4.142708 TGCTTCGCGACATGACATTAATTT 60.143 37.500 9.15 0.00 0.00 1.82
357 374 3.373748 TGCTTCGCGACATGACATTAATT 59.626 39.130 9.15 0.00 0.00 1.40
358 375 2.935849 TGCTTCGCGACATGACATTAAT 59.064 40.909 9.15 0.00 0.00 1.40
359 376 2.342179 TGCTTCGCGACATGACATTAA 58.658 42.857 9.15 0.00 0.00 1.40
360 377 2.003196 TGCTTCGCGACATGACATTA 57.997 45.000 9.15 0.00 0.00 1.90
361 378 1.135972 GTTGCTTCGCGACATGACATT 60.136 47.619 9.15 0.00 42.10 2.71
362 379 0.443869 GTTGCTTCGCGACATGACAT 59.556 50.000 9.15 0.00 42.10 3.06
363 380 0.878086 TGTTGCTTCGCGACATGACA 60.878 50.000 9.15 9.45 46.49 3.58
364 381 1.859398 TGTTGCTTCGCGACATGAC 59.141 52.632 9.15 6.61 46.49 3.06
365 382 4.352386 TGTTGCTTCGCGACATGA 57.648 50.000 9.15 0.00 46.49 3.07
371 388 2.234271 TAACCGCATGTTGCTTCGCG 62.234 55.000 0.00 0.00 46.96 5.87
372 389 0.521242 CTAACCGCATGTTGCTTCGC 60.521 55.000 0.00 0.00 42.25 4.70
373 390 1.075542 TCTAACCGCATGTTGCTTCG 58.924 50.000 0.00 0.00 42.25 3.79
374 391 2.223340 CCATCTAACCGCATGTTGCTTC 60.223 50.000 0.00 0.00 42.25 3.86
375 392 1.745087 CCATCTAACCGCATGTTGCTT 59.255 47.619 0.00 0.00 42.25 3.91
376 393 1.340017 ACCATCTAACCGCATGTTGCT 60.340 47.619 0.00 0.00 42.25 3.91
377 394 1.094785 ACCATCTAACCGCATGTTGC 58.905 50.000 0.00 0.00 37.83 4.17
378 395 4.188462 TCTAACCATCTAACCGCATGTTG 58.812 43.478 0.00 0.00 37.83 3.33
379 396 4.481368 TCTAACCATCTAACCGCATGTT 57.519 40.909 0.00 0.00 41.11 2.71
380 397 4.161565 TCTTCTAACCATCTAACCGCATGT 59.838 41.667 0.00 0.00 0.00 3.21
381 398 4.693283 TCTTCTAACCATCTAACCGCATG 58.307 43.478 0.00 0.00 0.00 4.06
382 399 5.116882 GTTCTTCTAACCATCTAACCGCAT 58.883 41.667 0.00 0.00 0.00 4.73
383 400 4.020928 TGTTCTTCTAACCATCTAACCGCA 60.021 41.667 0.00 0.00 0.00 5.69
384 401 4.501071 TGTTCTTCTAACCATCTAACCGC 58.499 43.478 0.00 0.00 0.00 5.68
385 402 6.594159 ACATTGTTCTTCTAACCATCTAACCG 59.406 38.462 0.00 0.00 0.00 4.44
386 403 7.923414 ACATTGTTCTTCTAACCATCTAACC 57.077 36.000 0.00 0.00 0.00 2.85
387 404 8.784043 ACAACATTGTTCTTCTAACCATCTAAC 58.216 33.333 0.00 0.00 38.47 2.34
388 405 8.918202 ACAACATTGTTCTTCTAACCATCTAA 57.082 30.769 0.00 0.00 38.47 2.10
404 421 7.581213 TTCTGATAAACTGGAACAACATTGT 57.419 32.000 0.00 0.00 44.72 2.71
405 422 7.382218 GGTTTCTGATAAACTGGAACAACATTG 59.618 37.037 0.00 0.00 38.70 2.82
406 423 7.069331 TGGTTTCTGATAAACTGGAACAACATT 59.931 33.333 0.00 0.00 38.70 2.71
407 424 6.549364 TGGTTTCTGATAAACTGGAACAACAT 59.451 34.615 0.00 0.00 38.70 2.71
408 425 5.888724 TGGTTTCTGATAAACTGGAACAACA 59.111 36.000 0.00 0.00 38.70 3.33
409 426 6.385649 TGGTTTCTGATAAACTGGAACAAC 57.614 37.500 0.00 0.00 38.70 3.32
410 427 7.411486 TTTGGTTTCTGATAAACTGGAACAA 57.589 32.000 0.00 0.00 38.70 2.83
411 428 7.505585 AGATTTGGTTTCTGATAAACTGGAACA 59.494 33.333 0.00 0.00 37.57 3.18
412 429 7.886338 AGATTTGGTTTCTGATAAACTGGAAC 58.114 34.615 0.00 0.00 35.89 3.62
413 430 8.359642 CAAGATTTGGTTTCTGATAAACTGGAA 58.640 33.333 0.00 0.00 0.00 3.53
414 431 7.723616 TCAAGATTTGGTTTCTGATAAACTGGA 59.276 33.333 0.00 0.00 0.00 3.86
415 432 7.885297 TCAAGATTTGGTTTCTGATAAACTGG 58.115 34.615 0.00 0.00 0.00 4.00
416 433 9.403110 CTTCAAGATTTGGTTTCTGATAAACTG 57.597 33.333 0.00 0.00 0.00 3.16
417 434 8.084684 GCTTCAAGATTTGGTTTCTGATAAACT 58.915 33.333 0.00 0.00 0.00 2.66
418 435 8.084684 AGCTTCAAGATTTGGTTTCTGATAAAC 58.915 33.333 0.00 0.00 0.00 2.01
419 436 8.181904 AGCTTCAAGATTTGGTTTCTGATAAA 57.818 30.769 0.00 0.00 0.00 1.40
420 437 7.361201 CGAGCTTCAAGATTTGGTTTCTGATAA 60.361 37.037 0.00 0.00 0.00 1.75
421 438 6.092670 CGAGCTTCAAGATTTGGTTTCTGATA 59.907 38.462 0.00 0.00 0.00 2.15
422 439 5.106396 CGAGCTTCAAGATTTGGTTTCTGAT 60.106 40.000 0.00 0.00 0.00 2.90
423 440 4.214119 CGAGCTTCAAGATTTGGTTTCTGA 59.786 41.667 0.00 0.00 0.00 3.27
424 441 4.470462 CGAGCTTCAAGATTTGGTTTCTG 58.530 43.478 0.00 0.00 0.00 3.02
425 442 3.057946 GCGAGCTTCAAGATTTGGTTTCT 60.058 43.478 0.00 0.00 0.00 2.52
426 443 3.237628 GCGAGCTTCAAGATTTGGTTTC 58.762 45.455 0.00 0.00 0.00 2.78
427 444 2.350772 CGCGAGCTTCAAGATTTGGTTT 60.351 45.455 0.00 0.00 0.00 3.27
428 445 1.197721 CGCGAGCTTCAAGATTTGGTT 59.802 47.619 0.00 0.00 0.00 3.67
429 446 0.798776 CGCGAGCTTCAAGATTTGGT 59.201 50.000 0.00 0.00 0.00 3.67
430 447 0.798776 ACGCGAGCTTCAAGATTTGG 59.201 50.000 15.93 0.00 0.00 3.28
431 448 2.601481 AACGCGAGCTTCAAGATTTG 57.399 45.000 15.93 0.00 0.00 2.32
432 449 2.290641 ACAAACGCGAGCTTCAAGATTT 59.709 40.909 15.93 0.00 0.00 2.17
433 450 1.873591 ACAAACGCGAGCTTCAAGATT 59.126 42.857 15.93 0.00 0.00 2.40
434 451 1.512926 ACAAACGCGAGCTTCAAGAT 58.487 45.000 15.93 0.00 0.00 2.40
435 452 1.260561 GAACAAACGCGAGCTTCAAGA 59.739 47.619 15.93 0.00 0.00 3.02
436 453 1.261619 AGAACAAACGCGAGCTTCAAG 59.738 47.619 15.93 0.00 0.00 3.02
437 454 1.003972 CAGAACAAACGCGAGCTTCAA 60.004 47.619 15.93 0.00 0.00 2.69
438 455 0.581529 CAGAACAAACGCGAGCTTCA 59.418 50.000 15.93 0.00 0.00 3.02
439 456 0.859232 TCAGAACAAACGCGAGCTTC 59.141 50.000 15.93 7.78 0.00 3.86
440 457 1.295792 TTCAGAACAAACGCGAGCTT 58.704 45.000 15.93 0.00 0.00 3.74
441 458 1.512926 ATTCAGAACAAACGCGAGCT 58.487 45.000 15.93 0.00 0.00 4.09
442 459 2.234187 GAATTCAGAACAAACGCGAGC 58.766 47.619 15.93 0.00 0.00 5.03
443 460 2.154963 TCGAATTCAGAACAAACGCGAG 59.845 45.455 15.93 4.52 0.00 5.03
444 461 2.128821 TCGAATTCAGAACAAACGCGA 58.871 42.857 15.93 0.00 0.00 5.87
445 462 2.570468 TCGAATTCAGAACAAACGCG 57.430 45.000 3.53 3.53 0.00 6.01
446 463 4.320953 GGAAATCGAATTCAGAACAAACGC 59.679 41.667 14.85 0.00 0.00 4.84
447 464 4.549599 CGGAAATCGAATTCAGAACAAACG 59.450 41.667 14.85 3.19 42.43 3.60
448 465 4.851558 CCGGAAATCGAATTCAGAACAAAC 59.148 41.667 14.85 0.00 42.43 2.93
449 466 4.614993 GCCGGAAATCGAATTCAGAACAAA 60.615 41.667 14.85 0.00 42.43 2.83
450 467 3.119990 GCCGGAAATCGAATTCAGAACAA 60.120 43.478 14.85 0.00 42.43 2.83
451 468 2.418628 GCCGGAAATCGAATTCAGAACA 59.581 45.455 14.85 0.00 42.43 3.18
452 469 2.536928 CGCCGGAAATCGAATTCAGAAC 60.537 50.000 14.85 6.04 42.43 3.01
453 470 1.663643 CGCCGGAAATCGAATTCAGAA 59.336 47.619 14.85 0.00 42.43 3.02
454 471 1.134936 TCGCCGGAAATCGAATTCAGA 60.135 47.619 14.85 4.46 42.43 3.27
455 472 1.286501 TCGCCGGAAATCGAATTCAG 58.713 50.000 14.85 10.60 42.43 3.02
456 473 1.948104 ATCGCCGGAAATCGAATTCA 58.052 45.000 14.85 0.00 42.43 2.57
457 474 3.725010 GCATATCGCCGGAAATCGAATTC 60.725 47.826 5.05 4.56 42.43 2.17
458 475 2.159627 GCATATCGCCGGAAATCGAATT 59.840 45.455 5.05 0.00 42.43 2.17
459 476 1.732259 GCATATCGCCGGAAATCGAAT 59.268 47.619 5.05 0.00 42.43 3.34
460 477 1.144969 GCATATCGCCGGAAATCGAA 58.855 50.000 5.05 0.00 42.43 3.71
461 478 1.006825 CGCATATCGCCGGAAATCGA 61.007 55.000 5.05 4.62 39.14 3.59
462 479 1.282248 ACGCATATCGCCGGAAATCG 61.282 55.000 5.05 0.00 43.23 3.34
463 480 0.865769 AACGCATATCGCCGGAAATC 59.134 50.000 5.05 0.00 43.23 2.17
464 481 1.305201 AAACGCATATCGCCGGAAAT 58.695 45.000 5.05 0.00 43.23 2.17
465 482 1.862201 CTAAACGCATATCGCCGGAAA 59.138 47.619 5.05 0.00 43.23 3.13
466 483 1.202440 ACTAAACGCATATCGCCGGAA 60.202 47.619 5.05 0.00 43.23 4.30
467 484 0.386476 ACTAAACGCATATCGCCGGA 59.614 50.000 5.05 0.00 43.23 5.14
468 485 1.983605 CTACTAAACGCATATCGCCGG 59.016 52.381 0.00 0.00 43.23 6.13
469 486 1.983605 CCTACTAAACGCATATCGCCG 59.016 52.381 0.00 0.00 43.23 6.46
470 487 3.243336 CTCCTACTAAACGCATATCGCC 58.757 50.000 0.00 0.00 43.23 5.54
471 488 3.057736 TCCTCCTACTAAACGCATATCGC 60.058 47.826 0.00 0.00 43.23 4.58
472 489 4.454847 TCTCCTCCTACTAAACGCATATCG 59.545 45.833 0.00 0.00 45.38 2.92
473 490 5.961396 TCTCCTCCTACTAAACGCATATC 57.039 43.478 0.00 0.00 0.00 1.63
474 491 5.775701 ACATCTCCTCCTACTAAACGCATAT 59.224 40.000 0.00 0.00 0.00 1.78
475 492 5.138276 ACATCTCCTCCTACTAAACGCATA 58.862 41.667 0.00 0.00 0.00 3.14
476 493 3.961408 ACATCTCCTCCTACTAAACGCAT 59.039 43.478 0.00 0.00 0.00 4.73
477 494 3.362706 ACATCTCCTCCTACTAAACGCA 58.637 45.455 0.00 0.00 0.00 5.24
478 495 4.098196 AGAACATCTCCTCCTACTAAACGC 59.902 45.833 0.00 0.00 0.00 4.84
479 496 5.504337 CGAGAACATCTCCTCCTACTAAACG 60.504 48.000 1.98 0.00 40.34 3.60
480 497 5.357596 ACGAGAACATCTCCTCCTACTAAAC 59.642 44.000 1.98 0.00 40.34 2.01
481 498 5.507637 ACGAGAACATCTCCTCCTACTAAA 58.492 41.667 1.98 0.00 40.34 1.85
482 499 5.113446 ACGAGAACATCTCCTCCTACTAA 57.887 43.478 1.98 0.00 40.34 2.24
483 500 4.774660 ACGAGAACATCTCCTCCTACTA 57.225 45.455 1.98 0.00 40.34 1.82
484 501 3.655615 ACGAGAACATCTCCTCCTACT 57.344 47.619 1.98 0.00 40.34 2.57
485 502 3.695060 TCAACGAGAACATCTCCTCCTAC 59.305 47.826 1.98 0.00 40.34 3.18
486 503 3.695060 GTCAACGAGAACATCTCCTCCTA 59.305 47.826 1.98 0.00 40.34 2.94
487 504 2.494073 GTCAACGAGAACATCTCCTCCT 59.506 50.000 1.98 0.00 40.34 3.69
488 505 2.494073 AGTCAACGAGAACATCTCCTCC 59.506 50.000 1.98 0.00 40.34 4.30
489 506 3.859411 AGTCAACGAGAACATCTCCTC 57.141 47.619 1.98 0.00 40.34 3.71
490 507 4.705337 GTAGTCAACGAGAACATCTCCT 57.295 45.455 1.98 0.00 40.34 3.69
511 528 3.172050 CAAAGTCATCCTACGTGTCTCG 58.828 50.000 0.00 0.00 46.00 4.04
512 529 4.175787 ACAAAGTCATCCTACGTGTCTC 57.824 45.455 0.00 0.00 0.00 3.36
513 530 5.717078 TTACAAAGTCATCCTACGTGTCT 57.283 39.130 0.00 0.00 0.00 3.41
514 531 6.774354 TTTTACAAAGTCATCCTACGTGTC 57.226 37.500 0.00 0.00 0.00 3.67
515 532 6.932400 TGATTTTACAAAGTCATCCTACGTGT 59.068 34.615 0.00 0.00 30.92 4.49
516 533 7.095397 TGTGATTTTACAAAGTCATCCTACGTG 60.095 37.037 0.00 0.00 37.07 4.49
517 534 6.932400 TGTGATTTTACAAAGTCATCCTACGT 59.068 34.615 3.62 0.00 37.07 3.57
518 535 7.359262 TGTGATTTTACAAAGTCATCCTACG 57.641 36.000 3.62 0.00 37.07 3.51
519 536 8.946085 TCATGTGATTTTACAAAGTCATCCTAC 58.054 33.333 3.62 0.00 37.07 3.18
520 537 9.685276 ATCATGTGATTTTACAAAGTCATCCTA 57.315 29.630 3.62 0.00 37.07 2.94
521 538 8.464404 CATCATGTGATTTTACAAAGTCATCCT 58.536 33.333 3.62 0.00 37.07 3.24
522 539 8.461222 TCATCATGTGATTTTACAAAGTCATCC 58.539 33.333 3.62 0.00 37.07 3.51
523 540 9.282247 GTCATCATGTGATTTTACAAAGTCATC 57.718 33.333 3.62 0.23 39.48 2.92
524 541 8.795513 TGTCATCATGTGATTTTACAAAGTCAT 58.204 29.630 3.62 0.00 39.48 3.06
525 542 8.164058 TGTCATCATGTGATTTTACAAAGTCA 57.836 30.769 0.00 0.00 39.48 3.41
526 543 9.069078 CATGTCATCATGTGATTTTACAAAGTC 57.931 33.333 0.00 0.00 44.37 3.01
527 544 8.975410 CATGTCATCATGTGATTTTACAAAGT 57.025 30.769 0.00 0.00 44.37 2.66
542 559 3.136077 AGACTAAGCTGGCATGTCATCAT 59.864 43.478 0.00 0.00 34.21 2.45
543 560 2.502947 AGACTAAGCTGGCATGTCATCA 59.497 45.455 0.00 0.00 0.00 3.07
544 561 3.191078 AGACTAAGCTGGCATGTCATC 57.809 47.619 0.00 0.00 0.00 2.92
545 562 3.641434 AAGACTAAGCTGGCATGTCAT 57.359 42.857 0.00 0.00 0.00 3.06
546 563 3.338249 GAAAGACTAAGCTGGCATGTCA 58.662 45.455 0.00 0.00 0.00 3.58
547 564 2.349886 CGAAAGACTAAGCTGGCATGTC 59.650 50.000 0.00 0.00 0.00 3.06
548 565 2.350522 CGAAAGACTAAGCTGGCATGT 58.649 47.619 0.00 0.00 0.00 3.21
549 566 1.667724 CCGAAAGACTAAGCTGGCATG 59.332 52.381 0.00 0.00 0.00 4.06
550 567 1.555075 TCCGAAAGACTAAGCTGGCAT 59.445 47.619 0.00 0.00 0.00 4.40
551 568 0.973632 TCCGAAAGACTAAGCTGGCA 59.026 50.000 0.00 0.00 0.00 4.92
552 569 1.204941 TCTCCGAAAGACTAAGCTGGC 59.795 52.381 0.00 0.00 0.00 4.85
553 570 3.452474 CATCTCCGAAAGACTAAGCTGG 58.548 50.000 0.00 0.00 36.65 4.85
554 571 2.863137 GCATCTCCGAAAGACTAAGCTG 59.137 50.000 0.00 0.00 36.65 4.24
555 572 2.763448 AGCATCTCCGAAAGACTAAGCT 59.237 45.455 0.00 0.00 36.65 3.74
556 573 3.120041 GAGCATCTCCGAAAGACTAAGC 58.880 50.000 0.00 0.00 36.65 3.09
557 574 3.181495 ACGAGCATCTCCGAAAGACTAAG 60.181 47.826 0.00 0.00 36.65 2.18
558 575 2.753452 ACGAGCATCTCCGAAAGACTAA 59.247 45.455 0.00 0.00 36.65 2.24
559 576 2.366533 ACGAGCATCTCCGAAAGACTA 58.633 47.619 0.00 0.00 36.65 2.59
560 577 1.178276 ACGAGCATCTCCGAAAGACT 58.822 50.000 0.00 0.00 36.65 3.24
561 578 2.541999 CCTACGAGCATCTCCGAAAGAC 60.542 54.545 0.00 0.00 36.65 3.01
562 579 1.676529 CCTACGAGCATCTCCGAAAGA 59.323 52.381 0.00 0.00 38.72 2.52
563 580 1.269309 CCCTACGAGCATCTCCGAAAG 60.269 57.143 0.00 0.00 0.00 2.62
564 581 0.744874 CCCTACGAGCATCTCCGAAA 59.255 55.000 0.00 0.00 0.00 3.46
565 582 1.107538 CCCCTACGAGCATCTCCGAA 61.108 60.000 0.00 0.00 0.00 4.30
566 583 1.528542 CCCCTACGAGCATCTCCGA 60.529 63.158 0.00 0.00 0.00 4.55
567 584 0.536687 TACCCCTACGAGCATCTCCG 60.537 60.000 0.00 0.00 0.00 4.63
568 585 1.546476 CATACCCCTACGAGCATCTCC 59.454 57.143 0.00 0.00 0.00 3.71
569 586 2.029828 CACATACCCCTACGAGCATCTC 60.030 54.545 0.00 0.00 0.00 2.75
570 587 1.964223 CACATACCCCTACGAGCATCT 59.036 52.381 0.00 0.00 0.00 2.90
571 588 1.687123 ACACATACCCCTACGAGCATC 59.313 52.381 0.00 0.00 0.00 3.91
572 589 1.412710 CACACATACCCCTACGAGCAT 59.587 52.381 0.00 0.00 0.00 3.79
573 590 0.821517 CACACATACCCCTACGAGCA 59.178 55.000 0.00 0.00 0.00 4.26
574 591 0.822164 ACACACATACCCCTACGAGC 59.178 55.000 0.00 0.00 0.00 5.03
575 592 1.470979 GCACACACATACCCCTACGAG 60.471 57.143 0.00 0.00 0.00 4.18
576 593 0.533491 GCACACACATACCCCTACGA 59.467 55.000 0.00 0.00 0.00 3.43
577 594 0.248012 TGCACACACATACCCCTACG 59.752 55.000 0.00 0.00 0.00 3.51
578 595 2.710096 ATGCACACACATACCCCTAC 57.290 50.000 0.00 0.00 0.00 3.18
579 596 2.419436 CGAATGCACACACATACCCCTA 60.419 50.000 0.00 0.00 0.00 3.53
580 597 1.678728 CGAATGCACACACATACCCCT 60.679 52.381 0.00 0.00 0.00 4.79
581 598 0.732571 CGAATGCACACACATACCCC 59.267 55.000 0.00 0.00 0.00 4.95
582 599 1.448985 ACGAATGCACACACATACCC 58.551 50.000 0.00 0.00 0.00 3.69
583 600 2.607635 CCTACGAATGCACACACATACC 59.392 50.000 0.00 0.00 0.00 2.73
584 601 2.607635 CCCTACGAATGCACACACATAC 59.392 50.000 0.00 0.00 0.00 2.39
585 602 2.235155 ACCCTACGAATGCACACACATA 59.765 45.455 0.00 0.00 0.00 2.29
586 603 1.003118 ACCCTACGAATGCACACACAT 59.997 47.619 0.00 0.00 0.00 3.21
587 604 0.394938 ACCCTACGAATGCACACACA 59.605 50.000 0.00 0.00 0.00 3.72
588 605 1.196808 CAACCCTACGAATGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
589 606 1.070914 TCAACCCTACGAATGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
590 607 1.732259 CTCAACCCTACGAATGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
591 608 1.346395 ACTCAACCCTACGAATGCACA 59.654 47.619 0.00 0.00 0.00 4.57
592 609 1.732259 CACTCAACCCTACGAATGCAC 59.268 52.381 0.00 0.00 0.00 4.57
593 610 1.346395 ACACTCAACCCTACGAATGCA 59.654 47.619 0.00 0.00 0.00 3.96
594 611 2.094762 ACACTCAACCCTACGAATGC 57.905 50.000 0.00 0.00 0.00 3.56
595 612 5.898174 TGTATACACTCAACCCTACGAATG 58.102 41.667 0.08 0.00 0.00 2.67
596 613 6.097839 ACATGTATACACTCAACCCTACGAAT 59.902 38.462 7.96 0.00 0.00 3.34
597 614 5.419788 ACATGTATACACTCAACCCTACGAA 59.580 40.000 7.96 0.00 0.00 3.85
598 615 4.951715 ACATGTATACACTCAACCCTACGA 59.048 41.667 7.96 0.00 0.00 3.43
599 616 5.258456 ACATGTATACACTCAACCCTACG 57.742 43.478 7.96 0.00 0.00 3.51
600 617 7.948357 TCATACATGTATACACTCAACCCTAC 58.052 38.462 17.86 0.00 0.00 3.18
601 618 7.255836 GCTCATACATGTATACACTCAACCCTA 60.256 40.741 17.86 0.00 0.00 3.53
602 619 6.463049 GCTCATACATGTATACACTCAACCCT 60.463 42.308 17.86 0.00 0.00 4.34
603 620 5.696724 GCTCATACATGTATACACTCAACCC 59.303 44.000 17.86 0.00 0.00 4.11
604 621 5.402568 CGCTCATACATGTATACACTCAACC 59.597 44.000 17.86 0.03 0.00 3.77
605 622 5.977725 ACGCTCATACATGTATACACTCAAC 59.022 40.000 17.86 2.31 0.00 3.18
606 623 6.144078 ACGCTCATACATGTATACACTCAA 57.856 37.500 17.86 0.00 0.00 3.02
607 624 5.767816 ACGCTCATACATGTATACACTCA 57.232 39.130 17.86 0.00 0.00 3.41
608 625 6.475727 ACAAACGCTCATACATGTATACACTC 59.524 38.462 17.86 5.60 0.00 3.51
609 626 6.255670 CACAAACGCTCATACATGTATACACT 59.744 38.462 17.86 0.00 0.00 3.55
610 627 6.035650 ACACAAACGCTCATACATGTATACAC 59.964 38.462 17.86 9.10 0.00 2.90
611 628 6.103330 ACACAAACGCTCATACATGTATACA 58.897 36.000 17.86 8.27 0.00 2.29
612 629 6.559703 CGACACAAACGCTCATACATGTATAC 60.560 42.308 17.86 9.75 0.00 1.47
613 630 5.457473 CGACACAAACGCTCATACATGTATA 59.543 40.000 17.86 6.47 0.00 1.47
614 631 4.267690 CGACACAAACGCTCATACATGTAT 59.732 41.667 12.75 12.75 0.00 2.29
615 632 3.610677 CGACACAAACGCTCATACATGTA 59.389 43.478 8.27 8.27 0.00 2.29
616 633 2.411748 CGACACAAACGCTCATACATGT 59.588 45.455 2.69 2.69 0.00 3.21
617 634 2.222796 CCGACACAAACGCTCATACATG 60.223 50.000 0.00 0.00 0.00 3.21
618 635 1.999735 CCGACACAAACGCTCATACAT 59.000 47.619 0.00 0.00 0.00 2.29
619 636 1.269883 ACCGACACAAACGCTCATACA 60.270 47.619 0.00 0.00 0.00 2.29
620 637 1.425412 ACCGACACAAACGCTCATAC 58.575 50.000 0.00 0.00 0.00 2.39
621 638 3.300852 TTACCGACACAAACGCTCATA 57.699 42.857 0.00 0.00 0.00 2.15
622 639 2.157834 TTACCGACACAAACGCTCAT 57.842 45.000 0.00 0.00 0.00 2.90
623 640 1.795872 CATTACCGACACAAACGCTCA 59.204 47.619 0.00 0.00 0.00 4.26
624 641 1.796459 ACATTACCGACACAAACGCTC 59.204 47.619 0.00 0.00 0.00 5.03
625 642 1.529438 CACATTACCGACACAAACGCT 59.471 47.619 0.00 0.00 0.00 5.07
626 643 1.262151 ACACATTACCGACACAAACGC 59.738 47.619 0.00 0.00 0.00 4.84
627 644 3.595709 AACACATTACCGACACAAACG 57.404 42.857 0.00 0.00 0.00 3.60
628 645 7.737525 TTTTTAACACATTACCGACACAAAC 57.262 32.000 0.00 0.00 0.00 2.93
671 688 4.673311 CGCCGCAATTAACAACCATATTAC 59.327 41.667 0.00 0.00 0.00 1.89
768 785 3.725490 AGTTCGGCCGATTAGGTTAATC 58.275 45.455 31.56 2.96 43.70 1.75
769 786 3.832615 AGTTCGGCCGATTAGGTTAAT 57.167 42.857 31.56 8.52 43.70 1.40
770 787 4.624015 CATAGTTCGGCCGATTAGGTTAA 58.376 43.478 31.56 8.52 43.70 2.01
771 788 3.553508 GCATAGTTCGGCCGATTAGGTTA 60.554 47.826 31.56 9.43 43.70 2.85
772 789 2.805657 GCATAGTTCGGCCGATTAGGTT 60.806 50.000 31.56 13.15 43.70 3.50
774 791 1.000955 AGCATAGTTCGGCCGATTAGG 59.999 52.381 31.56 24.87 44.97 2.69
775 792 2.440539 AGCATAGTTCGGCCGATTAG 57.559 50.000 31.56 17.88 0.00 1.73
878 898 1.895707 CCATTGATGGGCTCCTCGC 60.896 63.158 1.92 0.00 44.31 5.03
962 1000 0.185901 TTTCTTTCCTGGCCTGCAGT 59.814 50.000 13.81 0.00 0.00 4.40
963 1001 0.886563 CTTTCTTTCCTGGCCTGCAG 59.113 55.000 6.78 6.78 0.00 4.41
971 1028 5.249420 CCTCCCTTCTTACTTTCTTTCCTG 58.751 45.833 0.00 0.00 0.00 3.86
983 1040 0.918983 CATGTGCCCCTCCCTTCTTA 59.081 55.000 0.00 0.00 0.00 2.10
1077 1146 3.050275 GAGCAGCCGTGGTGGTTC 61.050 66.667 8.73 1.18 41.82 3.62
1078 1147 4.643387 GGAGCAGCCGTGGTGGTT 62.643 66.667 8.73 0.00 41.82 3.67
1109 1178 3.855853 GCGAGGAGGGGAGGAAGC 61.856 72.222 0.00 0.00 0.00 3.86
1236 1308 0.891904 GCTTGACCGGGGCTTTAACA 60.892 55.000 6.32 0.00 0.00 2.41
1238 1310 1.673009 CGCTTGACCGGGGCTTTAA 60.673 57.895 6.32 0.00 0.00 1.52
1398 1470 1.227089 CTCCATCTCGACCCGCTTG 60.227 63.158 0.00 0.00 0.00 4.01
1551 1623 4.116328 CTTCGCGCCGACCTCTCA 62.116 66.667 0.00 0.00 34.89 3.27
1636 1714 1.481056 CGGTTCTTGGAGGAGGTGGT 61.481 60.000 0.00 0.00 0.00 4.16
2232 2316 3.730761 GATCATCCATGGCGCCGC 61.731 66.667 23.90 0.00 0.00 6.53
2363 2458 2.083774 GTGATTGCAATCTCAACCGGA 58.916 47.619 33.23 13.25 36.39 5.14
2387 2482 6.940298 TGTTTTTCAGAAGATTATTCCCGTCT 59.060 34.615 0.00 0.00 0.00 4.18
2410 2506 5.385198 TCTGCCCTTTTAACTGAAGATTGT 58.615 37.500 0.00 0.00 0.00 2.71
2508 2619 3.138304 TCGTTTTGGAGTGGAATCACAG 58.862 45.455 0.00 0.00 45.91 3.66
2539 2650 3.611113 CCCAGTTGTCGTATGTTTCGTAG 59.389 47.826 0.00 0.00 0.00 3.51
2642 2759 1.669760 CCTTCTGGTTTACGCGGCA 60.670 57.895 12.47 0.00 0.00 5.69
2771 2903 1.741732 CGACTTTCCATGAGCAGAGGG 60.742 57.143 0.00 0.00 0.00 4.30
2791 2923 0.252103 TCTGTACCTCCCAGACCACC 60.252 60.000 0.00 0.00 34.12 4.61
2832 2964 5.071250 TGCTCAGTTTTGGGTTAGTCTTCTA 59.929 40.000 0.00 0.00 0.00 2.10
2833 2965 4.141482 TGCTCAGTTTTGGGTTAGTCTTCT 60.141 41.667 0.00 0.00 0.00 2.85
2834 2966 4.023963 GTGCTCAGTTTTGGGTTAGTCTTC 60.024 45.833 0.00 0.00 0.00 2.87
2861 2993 0.108804 TCACAAGGAACCTCGCGATC 60.109 55.000 10.36 4.05 0.00 3.69
2886 4209 5.809001 AGGACTTAAATGCTGATGAACTGA 58.191 37.500 0.00 0.00 0.00 3.41
2922 6786 1.069022 CCATTGCTTCAGTTCCACGTG 60.069 52.381 9.08 9.08 0.00 4.49
3143 7007 6.270695 TGGGATCATGAAGAATCTGCTATACA 59.729 38.462 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.