Multiple sequence alignment - TraesCS2A01G087000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G087000 chr2A 100.000 6776 0 0 1436 8211 40546806 40540031 0.000000e+00 12514.0
1 TraesCS2A01G087000 chr2A 100.000 1053 0 0 1 1053 40548241 40547189 0.000000e+00 1945.0
2 TraesCS2A01G087000 chr2D 95.710 4709 122 39 1436 6111 36544526 36539865 0.000000e+00 7504.0
3 TraesCS2A01G087000 chr2D 90.061 1318 95 24 6242 7538 36539859 36538557 0.000000e+00 1676.0
4 TraesCS2A01G087000 chr2D 88.477 512 44 11 549 1053 36545039 36544536 9.120000e-169 604.0
5 TraesCS2A01G087000 chr2D 95.522 134 6 0 6113 6246 315869269 315869136 1.790000e-51 215.0
6 TraesCS2A01G087000 chr2D 81.229 293 20 18 7624 7881 36538427 36538135 3.890000e-48 204.0
7 TraesCS2A01G087000 chr2D 80.952 210 19 10 8009 8211 36537962 36537767 6.640000e-31 147.0
8 TraesCS2A01G087000 chr2B 94.317 4733 188 35 1436 6120 62556002 62551303 0.000000e+00 7175.0
9 TraesCS2A01G087000 chr2B 90.330 1303 81 21 6249 7542 62551273 62550007 0.000000e+00 1666.0
10 TraesCS2A01G087000 chr2B 84.180 512 37 16 549 1053 62556486 62556012 2.700000e-124 457.0
11 TraesCS2A01G087000 chr2B 89.219 269 24 3 7946 8211 62549519 62549253 1.710000e-86 331.0
12 TraesCS2A01G087000 chr2B 81.757 148 12 8 7621 7756 62549890 62549746 8.710000e-20 110.0
13 TraesCS2A01G087000 chr2B 88.889 54 5 1 496 549 383143483 383143535 1.910000e-06 65.8
14 TraesCS2A01G087000 chr1B 87.737 1109 104 18 1436 2527 200412765 200413858 0.000000e+00 1266.0
15 TraesCS2A01G087000 chr1B 77.406 239 49 3 290 524 19439762 19439999 4.000000e-28 137.0
16 TraesCS2A01G087000 chr1A 78.508 563 80 30 3 558 102379657 102379129 1.710000e-86 331.0
17 TraesCS2A01G087000 chr1A 95.683 139 6 0 6110 6248 539330570 539330708 2.980000e-54 224.0
18 TraesCS2A01G087000 chr1D 78.000 550 78 24 7 552 471129262 471128752 1.040000e-78 305.0
19 TraesCS2A01G087000 chr1D 97.761 134 2 1 6118 6251 469018558 469018690 6.410000e-56 230.0
20 TraesCS2A01G087000 chr1D 97.727 132 3 0 6115 6246 194139900 194139769 2.310000e-55 228.0
21 TraesCS2A01G087000 chr5D 99.242 132 1 0 6115 6246 261390290 261390159 1.070000e-58 239.0
22 TraesCS2A01G087000 chr7A 95.745 141 6 0 6113 6253 14208248 14208388 2.310000e-55 228.0
23 TraesCS2A01G087000 chr6B 97.015 134 4 0 6114 6247 226196531 226196664 8.290000e-55 226.0
24 TraesCS2A01G087000 chr7B 95.714 140 5 1 6108 6247 372834973 372835111 2.980000e-54 224.0
25 TraesCS2A01G087000 chr3B 94.406 143 8 0 6110 6252 741865842 741865984 3.860000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G087000 chr2A 40540031 40548241 8210 True 7229.5 12514 100.0000 1 8211 2 chr2A.!!$R1 8210
1 TraesCS2A01G087000 chr2D 36537767 36545039 7272 True 2027.0 7504 87.2858 549 8211 5 chr2D.!!$R2 7662
2 TraesCS2A01G087000 chr2B 62549253 62556486 7233 True 1947.8 7175 87.9606 549 8211 5 chr2B.!!$R1 7662
3 TraesCS2A01G087000 chr1B 200412765 200413858 1093 False 1266.0 1266 87.7370 1436 2527 1 chr1B.!!$F2 1091
4 TraesCS2A01G087000 chr1A 102379129 102379657 528 True 331.0 331 78.5080 3 558 1 chr1A.!!$R1 555
5 TraesCS2A01G087000 chr1D 471128752 471129262 510 True 305.0 305 78.0000 7 552 1 chr1D.!!$R2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 630 0.034089 AACTGCCCCAACCTATCTGC 60.034 55.000 0.00 0.0 0.00 4.26 F
814 834 0.039180 TACTCCAAGGTCTCCAGCGA 59.961 55.000 0.00 0.0 0.00 4.93 F
1954 1993 0.388294 ACCTAGTTCCTATTCGCCGC 59.612 55.000 0.00 0.0 0.00 6.53 F
2328 2374 2.030958 GGTTAGGCCAACGACACCG 61.031 63.158 5.01 0.0 38.09 4.94 F
4222 4276 0.622665 ATCCACTTCCTTCCTGCCTG 59.377 55.000 0.00 0.0 0.00 4.85 F
6138 6231 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1599 0.759436 GCCGTATTCCTCCTCCTCCA 60.759 60.000 0.00 0.00 0.00 3.86 R
2316 2362 0.953960 AGGATTTCGGTGTCGTTGGC 60.954 55.000 0.00 0.00 37.69 4.52 R
3665 3719 1.065199 ACGTGATGATCAACATGCCCT 60.065 47.619 21.38 3.54 39.56 5.19 R
4265 4319 0.249911 AGGTCAAGTGCAGGACGTTC 60.250 55.000 0.00 0.00 34.87 3.95 R
6221 6314 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40 R
7272 7375 0.035458 ACAGGGTTGCTTCTTCTCCG 59.965 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.486636 AAATCGAGCGCTGACCGACA 62.487 55.000 18.48 0.00 40.02 4.35
48 49 2.126031 GCGGACGAGGAAGACACC 60.126 66.667 0.00 0.00 0.00 4.16
49 50 2.927580 GCGGACGAGGAAGACACCA 61.928 63.158 0.00 0.00 0.00 4.17
57 58 1.374758 GGAAGACACCACCAGAGCG 60.375 63.158 0.00 0.00 0.00 5.03
65 66 4.020617 CACCAGAGCGGAGGCCAA 62.021 66.667 5.01 0.00 41.24 4.52
66 67 3.011517 ACCAGAGCGGAGGCCAAT 61.012 61.111 5.01 0.00 41.24 3.16
74 79 2.190578 GGAGGCCAATGGACGGAG 59.809 66.667 5.01 0.00 34.63 4.63
77 82 1.910580 GAGGCCAATGGACGGAGGAA 61.911 60.000 5.01 0.00 34.63 3.36
83 88 1.765314 CAATGGACGGAGGAAGGAGAT 59.235 52.381 0.00 0.00 0.00 2.75
104 109 4.424566 GGACGGCCAGAACGCGTA 62.425 66.667 14.46 0.00 34.00 4.42
146 151 3.766691 GGCGGCCGGACTCAGTTA 61.767 66.667 29.38 0.00 0.00 2.24
149 154 2.711922 CGGCCGGACTCAGTTAGCT 61.712 63.158 20.10 0.00 0.00 3.32
150 155 1.381928 CGGCCGGACTCAGTTAGCTA 61.382 60.000 20.10 0.00 0.00 3.32
152 157 0.249114 GCCGGACTCAGTTAGCTAGC 60.249 60.000 5.05 6.62 0.00 3.42
153 158 1.394618 CCGGACTCAGTTAGCTAGCT 58.605 55.000 23.12 23.12 0.00 3.32
155 160 2.480416 CCGGACTCAGTTAGCTAGCTTG 60.480 54.545 24.88 15.62 0.00 4.01
159 164 2.159310 ACTCAGTTAGCTAGCTTGCTCG 60.159 50.000 25.94 15.11 42.97 5.03
160 165 0.926846 CAGTTAGCTAGCTTGCTCGC 59.073 55.000 25.94 18.51 42.97 5.03
161 166 0.532573 AGTTAGCTAGCTTGCTCGCA 59.467 50.000 25.94 6.47 42.97 5.10
162 167 0.926846 GTTAGCTAGCTTGCTCGCAG 59.073 55.000 25.94 0.00 42.97 5.18
163 168 0.532573 TTAGCTAGCTTGCTCGCAGT 59.467 50.000 25.94 4.23 42.97 4.40
164 169 1.389555 TAGCTAGCTTGCTCGCAGTA 58.610 50.000 25.94 4.90 42.97 2.74
166 171 0.873743 GCTAGCTTGCTCGCAGTAGG 60.874 60.000 13.17 0.00 0.00 3.18
209 224 4.253257 GCTAGCTAGCGCGACCGT 62.253 66.667 28.89 0.00 42.32 4.83
218 233 2.890109 GCGCGACCGTAGCTAGCTA 61.890 63.158 20.67 20.67 36.67 3.32
228 243 3.623993 GCTAGCTAGCTTGCTCGC 58.376 61.111 34.41 25.75 45.62 5.03
229 244 1.227089 GCTAGCTAGCTTGCTCGCA 60.227 57.895 34.41 14.54 46.62 5.10
230 245 0.599728 GCTAGCTAGCTTGCTCGCAT 60.600 55.000 34.41 11.88 46.62 4.73
233 248 0.107993 AGCTAGCTTGCTCGCATCAA 60.108 50.000 17.30 0.00 39.34 2.57
236 251 1.083806 TAGCTTGCTCGCATCAACGG 61.084 55.000 0.00 0.00 0.00 4.44
237 252 2.787249 CTTGCTCGCATCAACGGG 59.213 61.111 0.00 0.00 36.32 5.28
241 256 2.125552 CTCGCATCAACGGGCAGA 60.126 61.111 0.00 0.00 0.00 4.26
318 333 0.482446 TTCAAGGCATTGGTGGGAGT 59.518 50.000 11.73 0.00 37.02 3.85
340 355 2.224992 TGAAATTCCCCAACTGCTAGCA 60.225 45.455 18.22 18.22 0.00 3.49
348 363 2.430465 CCAACTGCTAGCATTGACTGT 58.570 47.619 27.31 16.67 0.00 3.55
399 414 5.047802 TCGAAACTAAAGATACACGGGTCTT 60.048 40.000 0.00 0.00 36.29 3.01
411 426 1.178534 CGGGTCTTGGGCATGTGTTT 61.179 55.000 0.00 0.00 0.00 2.83
414 429 2.514803 GGTCTTGGGCATGTGTTTACT 58.485 47.619 0.00 0.00 0.00 2.24
415 430 2.228822 GGTCTTGGGCATGTGTTTACTG 59.771 50.000 0.00 0.00 0.00 2.74
416 431 2.228822 GTCTTGGGCATGTGTTTACTGG 59.771 50.000 0.00 0.00 0.00 4.00
417 432 1.545582 CTTGGGCATGTGTTTACTGGG 59.454 52.381 0.00 0.00 0.00 4.45
418 433 0.897863 TGGGCATGTGTTTACTGGGC 60.898 55.000 0.00 0.00 0.00 5.36
419 434 1.604147 GGGCATGTGTTTACTGGGCC 61.604 60.000 0.00 0.00 38.39 5.80
420 435 1.604147 GGCATGTGTTTACTGGGCCC 61.604 60.000 17.59 17.59 34.27 5.80
421 436 0.611896 GCATGTGTTTACTGGGCCCT 60.612 55.000 25.70 5.93 0.00 5.19
422 437 1.176527 CATGTGTTTACTGGGCCCTG 58.823 55.000 26.14 26.14 0.00 4.45
423 438 0.777446 ATGTGTTTACTGGGCCCTGT 59.223 50.000 33.79 33.79 0.00 4.00
424 439 1.436326 TGTGTTTACTGGGCCCTGTA 58.564 50.000 31.69 31.69 0.00 2.74
425 440 1.775459 TGTGTTTACTGGGCCCTGTAA 59.225 47.619 37.23 37.23 38.14 2.41
426 441 2.377193 TGTGTTTACTGGGCCCTGTAAT 59.623 45.455 39.43 21.41 39.10 1.89
427 442 3.181427 TGTGTTTACTGGGCCCTGTAATT 60.181 43.478 39.43 21.09 39.10 1.40
428 443 3.830178 GTGTTTACTGGGCCCTGTAATTT 59.170 43.478 39.43 20.77 39.10 1.82
429 444 4.282449 GTGTTTACTGGGCCCTGTAATTTT 59.718 41.667 39.43 20.14 39.10 1.82
430 445 4.902448 TGTTTACTGGGCCCTGTAATTTTT 59.098 37.500 39.43 19.51 39.10 1.94
455 470 9.762933 TTTTGAAGGGTTGAATGATTTTAAGAG 57.237 29.630 0.00 0.00 0.00 2.85
456 471 8.704849 TTGAAGGGTTGAATGATTTTAAGAGA 57.295 30.769 0.00 0.00 0.00 3.10
457 472 8.884124 TGAAGGGTTGAATGATTTTAAGAGAT 57.116 30.769 0.00 0.00 0.00 2.75
458 473 8.960591 TGAAGGGTTGAATGATTTTAAGAGATC 58.039 33.333 0.00 0.00 0.00 2.75
459 474 9.183368 GAAGGGTTGAATGATTTTAAGAGATCT 57.817 33.333 0.00 0.00 0.00 2.75
460 475 8.517062 AGGGTTGAATGATTTTAAGAGATCTG 57.483 34.615 0.00 0.00 0.00 2.90
461 476 8.112183 AGGGTTGAATGATTTTAAGAGATCTGT 58.888 33.333 0.00 0.00 0.00 3.41
462 477 8.743714 GGGTTGAATGATTTTAAGAGATCTGTT 58.256 33.333 10.33 10.33 0.00 3.16
463 478 9.780413 GGTTGAATGATTTTAAGAGATCTGTTC 57.220 33.333 8.63 0.00 0.00 3.18
464 479 9.483062 GTTGAATGATTTTAAGAGATCTGTTCG 57.517 33.333 8.63 0.00 0.00 3.95
465 480 8.201554 TGAATGATTTTAAGAGATCTGTTCGG 57.798 34.615 8.63 0.00 0.00 4.30
466 481 7.280876 TGAATGATTTTAAGAGATCTGTTCGGG 59.719 37.037 8.63 0.00 0.00 5.14
467 482 6.049955 TGATTTTAAGAGATCTGTTCGGGT 57.950 37.500 8.63 0.00 0.00 5.28
468 483 6.472887 TGATTTTAAGAGATCTGTTCGGGTT 58.527 36.000 8.63 0.00 0.00 4.11
469 484 6.594159 TGATTTTAAGAGATCTGTTCGGGTTC 59.406 38.462 8.63 2.63 0.00 3.62
470 485 2.656560 AAGAGATCTGTTCGGGTTCG 57.343 50.000 0.00 0.00 37.82 3.95
471 486 1.546961 AGAGATCTGTTCGGGTTCGT 58.453 50.000 0.00 0.00 37.69 3.85
472 487 1.893801 AGAGATCTGTTCGGGTTCGTT 59.106 47.619 0.00 0.00 37.69 3.85
473 488 2.299297 AGAGATCTGTTCGGGTTCGTTT 59.701 45.455 0.00 0.00 37.69 3.60
474 489 3.064931 GAGATCTGTTCGGGTTCGTTTT 58.935 45.455 0.00 0.00 37.69 2.43
475 490 3.473625 AGATCTGTTCGGGTTCGTTTTT 58.526 40.909 0.00 0.00 37.69 1.94
498 513 7.569677 TTTTAACTGAAACTGTGAAAAACGG 57.430 32.000 0.00 0.00 41.37 4.44
510 525 7.197703 ACTGTGAAAAACGGTTATTTTACTGG 58.802 34.615 19.86 15.21 46.79 4.00
511 526 7.098074 TGTGAAAAACGGTTATTTTACTGGT 57.902 32.000 16.32 0.00 31.50 4.00
512 527 7.545489 TGTGAAAAACGGTTATTTTACTGGTT 58.455 30.769 16.32 0.00 35.88 3.67
513 528 8.033626 TGTGAAAAACGGTTATTTTACTGGTTT 58.966 29.630 16.32 0.00 44.14 3.27
514 529 8.322428 GTGAAAAACGGTTATTTTACTGGTTTG 58.678 33.333 0.00 0.00 42.06 2.93
515 530 8.248945 TGAAAAACGGTTATTTTACTGGTTTGA 58.751 29.630 0.00 0.00 42.06 2.69
516 531 7.990541 AAAACGGTTATTTTACTGGTTTGAC 57.009 32.000 0.00 0.00 41.51 3.18
517 532 5.694231 ACGGTTATTTTACTGGTTTGACC 57.306 39.130 0.00 0.00 39.22 4.02
518 533 7.363617 AAAACGGTTATTTTACTGGTTTGACCA 60.364 33.333 0.00 0.00 41.51 4.02
519 534 5.008911 ACGGTTATTTTACTGGTTTGACCAC 59.991 40.000 0.00 0.00 44.79 4.16
520 535 5.239963 CGGTTATTTTACTGGTTTGACCACT 59.760 40.000 0.00 0.00 44.79 4.00
521 536 6.238814 CGGTTATTTTACTGGTTTGACCACTT 60.239 38.462 0.00 0.00 44.79 3.16
522 537 7.041235 CGGTTATTTTACTGGTTTGACCACTTA 60.041 37.037 0.00 0.00 44.79 2.24
523 538 8.799367 GGTTATTTTACTGGTTTGACCACTTAT 58.201 33.333 0.00 0.00 44.79 1.73
527 542 7.931578 TTTACTGGTTTGACCACTTATATGG 57.068 36.000 0.00 0.00 44.79 2.74
528 543 4.855340 ACTGGTTTGACCACTTATATGGG 58.145 43.478 0.00 0.00 44.79 4.00
529 544 4.207165 CTGGTTTGACCACTTATATGGGG 58.793 47.826 5.36 5.36 44.79 4.96
530 545 3.594232 TGGTTTGACCACTTATATGGGGT 59.406 43.478 12.22 12.22 44.79 4.95
531 546 4.324719 TGGTTTGACCACTTATATGGGGTC 60.325 45.833 26.06 26.06 44.79 4.46
532 547 6.531404 TGGTTTGACCACTTATATGGGGTCT 61.531 44.000 30.11 5.80 44.79 3.85
533 548 8.497784 TGGTTTGACCACTTATATGGGGTCTG 62.498 46.154 30.11 4.46 44.79 3.51
534 549 3.771577 GACCACTTATATGGGGTCTGG 57.228 52.381 25.69 10.53 44.99 3.86
535 550 3.046374 GACCACTTATATGGGGTCTGGT 58.954 50.000 25.69 13.16 44.99 4.00
536 551 4.228824 GACCACTTATATGGGGTCTGGTA 58.771 47.826 25.69 0.00 44.99 3.25
537 552 4.232091 ACCACTTATATGGGGTCTGGTAG 58.768 47.826 6.73 0.00 44.81 3.18
538 553 4.078219 ACCACTTATATGGGGTCTGGTAGA 60.078 45.833 6.73 0.00 44.81 2.59
539 554 4.528596 CCACTTATATGGGGTCTGGTAGAG 59.471 50.000 0.00 0.00 35.95 2.43
540 555 5.394738 CACTTATATGGGGTCTGGTAGAGA 58.605 45.833 0.00 0.00 0.00 3.10
541 556 6.019748 CACTTATATGGGGTCTGGTAGAGAT 58.980 44.000 0.00 0.00 31.63 2.75
542 557 6.019748 ACTTATATGGGGTCTGGTAGAGATG 58.980 44.000 0.00 0.00 31.63 2.90
543 558 1.428869 ATGGGGTCTGGTAGAGATGC 58.571 55.000 0.00 0.00 31.63 3.91
544 559 0.339859 TGGGGTCTGGTAGAGATGCT 59.660 55.000 0.00 0.00 31.63 3.79
545 560 1.044611 GGGGTCTGGTAGAGATGCTC 58.955 60.000 0.00 0.00 31.63 4.26
546 561 1.412361 GGGGTCTGGTAGAGATGCTCT 60.412 57.143 2.22 2.22 43.83 4.09
547 562 2.158445 GGGGTCTGGTAGAGATGCTCTA 60.158 54.545 0.22 0.22 41.50 2.43
559 574 8.688151 GGTAGAGATGCTCTAAGAAGTTTTCTA 58.312 37.037 5.79 0.00 43.53 2.10
568 583 8.560374 GCTCTAAGAAGTTTTCTACAAATGTGT 58.440 33.333 0.00 0.00 39.61 3.72
584 599 4.844349 ATGTGTAGCAAAGTGATAGGGT 57.156 40.909 0.00 0.00 0.00 4.34
585 600 3.937814 TGTGTAGCAAAGTGATAGGGTG 58.062 45.455 0.00 0.00 0.00 4.61
586 601 3.326588 TGTGTAGCAAAGTGATAGGGTGT 59.673 43.478 0.00 0.00 0.00 4.16
587 602 3.933332 GTGTAGCAAAGTGATAGGGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
588 603 3.838317 TGTAGCAAAGTGATAGGGTGTCT 59.162 43.478 0.00 0.00 0.00 3.41
590 605 5.482526 TGTAGCAAAGTGATAGGGTGTCTTA 59.517 40.000 0.00 0.00 0.00 2.10
591 606 4.833390 AGCAAAGTGATAGGGTGTCTTAC 58.167 43.478 0.00 0.00 0.00 2.34
592 607 4.286032 AGCAAAGTGATAGGGTGTCTTACA 59.714 41.667 0.00 0.00 0.00 2.41
596 611 7.360361 CAAAGTGATAGGGTGTCTTACAAAAC 58.640 38.462 0.00 0.00 0.00 2.43
597 612 6.435292 AGTGATAGGGTGTCTTACAAAACT 57.565 37.500 0.00 0.00 0.00 2.66
598 613 6.231211 AGTGATAGGGTGTCTTACAAAACTG 58.769 40.000 0.00 0.00 0.00 3.16
599 614 5.001232 TGATAGGGTGTCTTACAAAACTGC 58.999 41.667 0.00 0.00 0.00 4.40
601 616 1.611977 GGGTGTCTTACAAAACTGCCC 59.388 52.381 0.00 0.00 0.00 5.36
603 618 2.303175 GTGTCTTACAAAACTGCCCCA 58.697 47.619 0.00 0.00 0.00 4.96
605 620 2.691011 TGTCTTACAAAACTGCCCCAAC 59.309 45.455 0.00 0.00 0.00 3.77
606 621 2.035449 GTCTTACAAAACTGCCCCAACC 59.965 50.000 0.00 0.00 0.00 3.77
607 622 2.091555 TCTTACAAAACTGCCCCAACCT 60.092 45.455 0.00 0.00 0.00 3.50
612 629 2.493278 CAAAACTGCCCCAACCTATCTG 59.507 50.000 0.00 0.00 0.00 2.90
613 630 0.034089 AACTGCCCCAACCTATCTGC 60.034 55.000 0.00 0.00 0.00 4.26
616 633 1.453928 GCCCCAACCTATCTGCCAC 60.454 63.158 0.00 0.00 0.00 5.01
626 643 2.054363 CTATCTGCCACGCGTTAGATG 58.946 52.381 27.48 18.39 32.54 2.90
627 644 0.175760 ATCTGCCACGCGTTAGATGT 59.824 50.000 22.34 7.21 0.00 3.06
649 666 6.356556 TGTAAATCGGATGGTCAGAAATGAT 58.643 36.000 0.00 0.00 0.00 2.45
651 668 4.694760 ATCGGATGGTCAGAAATGATGA 57.305 40.909 0.00 0.00 0.00 2.92
652 669 3.797039 TCGGATGGTCAGAAATGATGAC 58.203 45.455 0.00 0.00 45.12 3.06
653 670 2.541346 CGGATGGTCAGAAATGATGACG 59.459 50.000 0.44 0.00 46.49 4.35
672 689 1.065102 CGAACGACGGGTACATCATCT 59.935 52.381 0.00 0.00 38.46 2.90
682 699 4.589908 GGGTACATCATCTTCACCAACTT 58.410 43.478 0.00 0.00 0.00 2.66
709 727 5.348724 TCGTTTGTATGAGCAGAGAAATGAC 59.651 40.000 5.79 0.00 29.61 3.06
710 728 5.120674 CGTTTGTATGAGCAGAGAAATGACA 59.879 40.000 1.99 0.00 0.00 3.58
735 753 9.753669 CAAAACACTCCAAGAAAAATACAAAAC 57.246 29.630 0.00 0.00 0.00 2.43
742 760 7.038659 TCCAAGAAAAATACAAAACAGTGGTG 58.961 34.615 0.00 0.00 0.00 4.17
744 762 5.356426 AGAAAAATACAAAACAGTGGTGGC 58.644 37.500 0.00 0.00 0.00 5.01
747 765 3.726291 ATACAAAACAGTGGTGGCAAC 57.274 42.857 0.00 0.00 0.00 4.17
812 832 3.259625 GGATATACTCCAAGGTCTCCAGC 59.740 52.174 0.00 0.00 44.26 4.85
814 834 0.039180 TACTCCAAGGTCTCCAGCGA 59.961 55.000 0.00 0.00 0.00 4.93
817 837 0.984230 TCCAAGGTCTCCAGCGAAAT 59.016 50.000 0.00 0.00 0.00 2.17
970 991 4.429212 TCACATCACCGTCGCCCG 62.429 66.667 0.00 0.00 0.00 6.13
1591 1612 1.305046 GGACGTGGAGGAGGAGGAA 60.305 63.158 0.00 0.00 0.00 3.36
1592 1613 0.688087 GGACGTGGAGGAGGAGGAAT 60.688 60.000 0.00 0.00 0.00 3.01
1593 1614 1.411216 GGACGTGGAGGAGGAGGAATA 60.411 57.143 0.00 0.00 0.00 1.75
1594 1615 1.682323 GACGTGGAGGAGGAGGAATAC 59.318 57.143 0.00 0.00 0.00 1.89
1595 1616 0.669077 CGTGGAGGAGGAGGAATACG 59.331 60.000 0.00 0.00 0.00 3.06
1596 1617 1.041437 GTGGAGGAGGAGGAATACGG 58.959 60.000 0.00 0.00 0.00 4.02
1599 1620 1.807495 GAGGAGGAGGAATACGGCGG 61.807 65.000 13.24 0.00 0.00 6.13
1825 1858 1.068588 TGTTCAGTAGTTCAGTGCGCT 59.931 47.619 9.73 0.00 0.00 5.92
1826 1859 2.295070 TGTTCAGTAGTTCAGTGCGCTA 59.705 45.455 9.73 0.00 0.00 4.26
1934 1967 0.969149 TGGCTCAGTACTCACCACTG 59.031 55.000 0.00 0.00 43.92 3.66
1952 1991 2.694109 ACTGACCTAGTTCCTATTCGCC 59.306 50.000 0.00 0.00 35.67 5.54
1953 1992 1.679680 TGACCTAGTTCCTATTCGCCG 59.320 52.381 0.00 0.00 0.00 6.46
1954 1993 0.388294 ACCTAGTTCCTATTCGCCGC 59.612 55.000 0.00 0.00 0.00 6.53
2002 2042 2.866156 GGTTTCAGCTTTGGCAAAACTC 59.134 45.455 12.70 5.79 41.63 3.01
2166 2208 3.636300 ACATGGCTTCACTTGCAGTTTTA 59.364 39.130 0.00 0.00 0.00 1.52
2176 2218 5.067674 TCACTTGCAGTTTTAAGCACTGAAT 59.932 36.000 17.10 0.00 43.90 2.57
2207 2249 7.043656 GGAAGCATGTTTTGTAACAGTTGTAAC 60.044 37.037 0.00 0.00 46.71 2.50
2316 2362 2.541466 AGAGTTGGGTCTCTGGTTAGG 58.459 52.381 0.00 0.00 42.36 2.69
2328 2374 2.030958 GGTTAGGCCAACGACACCG 61.031 63.158 5.01 0.00 38.09 4.94
2543 2589 5.186021 AGTGACAACATGTTGGGTTTGTAAA 59.814 36.000 35.20 12.15 44.45 2.01
2628 2674 9.280174 CACAACTTTATGAGGTTTACTTCCTTA 57.720 33.333 0.00 0.00 35.20 2.69
2715 2761 4.206477 TGCATGTAGCTCACACACTAAT 57.794 40.909 0.00 0.00 45.94 1.73
2767 2813 5.288804 TGTATTTCTCTGCAACCTTTTTGC 58.711 37.500 1.95 1.95 45.11 3.68
2800 2849 7.436080 TCAAAATTCATGCTCAGAAACAACTTC 59.564 33.333 0.00 0.00 0.00 3.01
3779 3833 5.445939 GCATTATATCCTTCGTGTATTGGCG 60.446 44.000 0.00 0.00 0.00 5.69
3916 3970 0.843309 TTCCAGACTGGCCTGTGAAA 59.157 50.000 21.29 5.88 37.47 2.69
4216 4270 2.838202 TGAGGTACATCCACTTCCTTCC 59.162 50.000 4.87 0.00 39.02 3.46
4222 4276 0.622665 ATCCACTTCCTTCCTGCCTG 59.377 55.000 0.00 0.00 0.00 4.85
4230 4284 1.704628 TCCTTCCTGCCTGATTGTTGA 59.295 47.619 0.00 0.00 0.00 3.18
4255 4309 4.530710 TGTCTCACGTAGCAATAAACCT 57.469 40.909 0.00 0.00 0.00 3.50
4256 4310 4.242475 TGTCTCACGTAGCAATAAACCTG 58.758 43.478 0.00 0.00 0.00 4.00
4257 4311 4.021807 TGTCTCACGTAGCAATAAACCTGA 60.022 41.667 0.00 0.00 0.00 3.86
4265 4319 5.233050 CGTAGCAATAAACCTGATGAGACAG 59.767 44.000 0.00 0.00 37.61 3.51
4456 4510 7.828508 TTGTAGTAACCTGTTTACTCTCTCA 57.171 36.000 0.57 0.00 46.44 3.27
4728 4797 2.500098 ACCGCCAACATAGACTGTACAT 59.500 45.455 0.00 0.00 36.98 2.29
4868 4937 8.577296 TCTATATTGATTTGTCGAGGGTTAGAG 58.423 37.037 0.00 0.00 0.00 2.43
5156 5227 5.071788 TGTTGTCCTCTTCAGTATTTCTGGT 59.928 40.000 0.00 0.00 43.76 4.00
5179 5250 8.772250 TGGTCTTCCAATTTCTATATTCACTCT 58.228 33.333 0.00 0.00 41.25 3.24
5643 5729 5.998363 GTGGACAATCTTGAGAAAGTTACCT 59.002 40.000 0.00 0.00 0.00 3.08
5676 5763 3.446442 AAACCATCAGTCAGCAGGATT 57.554 42.857 0.00 0.00 0.00 3.01
5774 5863 4.038271 TGACATTTTTCTCCAGCCATCT 57.962 40.909 0.00 0.00 0.00 2.90
5777 5866 6.009589 TGACATTTTTCTCCAGCCATCTTTA 58.990 36.000 0.00 0.00 0.00 1.85
5901 5990 4.155826 TGGACTAATGTTTTCAATCCAGCG 59.844 41.667 0.00 0.00 32.14 5.18
5973 6062 5.400066 AGGTAATAACATTTTGTGCCCAC 57.600 39.130 0.00 0.00 0.00 4.61
5997 6086 8.641498 ACATCTCCTGTGTCTTTATTTTTCAT 57.359 30.769 0.00 0.00 36.48 2.57
5998 6087 9.739276 ACATCTCCTGTGTCTTTATTTTTCATA 57.261 29.630 0.00 0.00 36.48 2.15
6113 6206 3.895656 GAGGTGTACCCATACTGCATCTA 59.104 47.826 0.00 0.00 36.42 1.98
6114 6207 4.295201 AGGTGTACCCATACTGCATCTAA 58.705 43.478 0.00 0.00 36.42 2.10
6120 6213 8.750298 GTGTACCCATACTGCATCTAATATACT 58.250 37.037 0.00 0.00 32.00 2.12
6121 6214 8.967918 TGTACCCATACTGCATCTAATATACTC 58.032 37.037 0.00 0.00 32.00 2.59
6122 6215 7.425224 ACCCATACTGCATCTAATATACTCC 57.575 40.000 0.00 0.00 0.00 3.85
6123 6216 6.384305 ACCCATACTGCATCTAATATACTCCC 59.616 42.308 0.00 0.00 0.00 4.30
6124 6217 6.613271 CCCATACTGCATCTAATATACTCCCT 59.387 42.308 0.00 0.00 0.00 4.20
6125 6218 7.201956 CCCATACTGCATCTAATATACTCCCTC 60.202 44.444 0.00 0.00 0.00 4.30
6126 6219 7.201956 CCATACTGCATCTAATATACTCCCTCC 60.202 44.444 0.00 0.00 0.00 4.30
6127 6220 4.707448 ACTGCATCTAATATACTCCCTCCG 59.293 45.833 0.00 0.00 0.00 4.63
6129 6222 4.705507 TGCATCTAATATACTCCCTCCGTC 59.294 45.833 0.00 0.00 0.00 4.79
6130 6223 4.098196 GCATCTAATATACTCCCTCCGTCC 59.902 50.000 0.00 0.00 0.00 4.79
6131 6224 4.313020 TCTAATATACTCCCTCCGTCCC 57.687 50.000 0.00 0.00 0.00 4.46
6132 6225 3.659195 TCTAATATACTCCCTCCGTCCCA 59.341 47.826 0.00 0.00 0.00 4.37
6135 6228 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
6138 6231 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6142 6235 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6144 6237 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6145 6238 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
6146 6239 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
6148 6241 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
6149 6242 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
6150 6243 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
6151 6244 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
6152 6245 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
6153 6246 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
6154 6247 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
6155 6248 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
6177 6270 9.803315 TGTCTAAATACAGATGTATCAAGTCAC 57.197 33.333 5.97 3.82 40.10 3.67
6178 6271 9.803315 GTCTAAATACAGATGTATCAAGTCACA 57.197 33.333 5.97 0.00 40.10 3.58
6231 6324 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
6232 6325 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
6233 6326 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
6234 6327 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
6235 6328 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
6236 6329 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
6237 6330 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6238 6331 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
6239 6332 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6240 6333 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6241 6334 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
6242 6335 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
6243 6336 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6244 6337 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
6245 6338 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
6246 6339 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
6247 6340 0.928505 TGGGACGGAGGGAGTACATA 59.071 55.000 0.00 0.00 0.00 2.29
6252 6345 3.488363 GACGGAGGGAGTACATATCTGT 58.512 50.000 0.00 0.00 39.49 3.41
6422 6515 2.421424 CTCAGGTTAGCACTGCCATTTC 59.579 50.000 0.00 0.00 35.94 2.17
6520 6613 2.221981 GTCTCCTTTGAGCAACAACTCG 59.778 50.000 0.00 0.00 39.68 4.18
6539 6632 5.603596 ACTCGTTGTTTATTGACTACCACA 58.396 37.500 0.00 0.00 0.00 4.17
6547 6640 0.682852 TTGACTACCACAGGAACCCG 59.317 55.000 0.00 0.00 0.00 5.28
6604 6697 3.493334 TCTCTCAACTGACGACCCTTTA 58.507 45.455 0.00 0.00 0.00 1.85
6665 6758 3.435327 CAGTGTTGCTGCTTCGGTAAATA 59.565 43.478 0.00 0.00 38.52 1.40
6666 6759 4.094887 CAGTGTTGCTGCTTCGGTAAATAT 59.905 41.667 0.00 0.00 38.52 1.28
6689 6783 0.042581 TGCTCCCTCCCACTATGTGA 59.957 55.000 0.00 0.00 35.23 3.58
6708 6802 0.994247 ATCTGTTCCATGCCCACTCA 59.006 50.000 0.00 0.00 0.00 3.41
6709 6803 0.325933 TCTGTTCCATGCCCACTCAG 59.674 55.000 0.00 0.00 0.00 3.35
6710 6804 0.325933 CTGTTCCATGCCCACTCAGA 59.674 55.000 0.00 0.00 0.00 3.27
6727 6821 4.534103 ACTCAGAGACCTGCCTAATTCTTT 59.466 41.667 3.79 0.00 40.20 2.52
6855 6949 3.925299 CGCATTGTACATTCATTTGCCAA 59.075 39.130 0.00 0.00 0.00 4.52
6859 6953 7.306953 GCATTGTACATTCATTTGCCAATTTT 58.693 30.769 0.00 0.00 0.00 1.82
6881 6975 7.979444 TTTCTCTGTTCTTACATAACCCAAG 57.021 36.000 0.00 0.00 32.86 3.61
6917 7011 2.967745 AGCTCTGGCCTTTCTTTTCT 57.032 45.000 3.32 0.00 39.73 2.52
6921 7015 4.038522 AGCTCTGGCCTTTCTTTTCTTTTC 59.961 41.667 3.32 0.00 39.73 2.29
7042 7136 3.976306 CGACACAACGTATGTACTTCACA 59.024 43.478 5.42 0.00 41.46 3.58
7043 7137 4.143680 CGACACAACGTATGTACTTCACAC 60.144 45.833 5.42 0.00 41.46 3.82
7044 7138 4.053295 ACACAACGTATGTACTTCACACC 58.947 43.478 3.65 0.00 41.46 4.16
7045 7139 4.202182 ACACAACGTATGTACTTCACACCT 60.202 41.667 3.65 0.00 41.46 4.00
7046 7140 5.009911 ACACAACGTATGTACTTCACACCTA 59.990 40.000 3.65 0.00 41.46 3.08
7047 7141 5.344128 CACAACGTATGTACTTCACACCTAC 59.656 44.000 0.00 0.00 41.46 3.18
7052 7146 4.537135 ATGTACTTCACACCTACACCTG 57.463 45.455 0.00 0.00 40.86 4.00
7060 7154 2.299013 CACACCTACACCTGTTCTGCTA 59.701 50.000 0.00 0.00 0.00 3.49
7079 7173 8.709386 TCTGCTAGTGTTATCTGATCTTTTTC 57.291 34.615 0.00 0.00 0.00 2.29
7093 7189 5.750067 TGATCTTTTTCTTTCTTGTGCTTGC 59.250 36.000 0.00 0.00 0.00 4.01
7118 7214 5.230516 GTGTTTGGTTTGTTCCGTTGATAAC 59.769 40.000 0.00 0.00 0.00 1.89
7132 7228 5.286797 CCGTTGATAACTGCATTTGTGATTG 59.713 40.000 0.00 0.00 0.00 2.67
7174 7270 5.028549 ACGAGATGGAGCTGATACATTTT 57.971 39.130 0.00 0.00 30.07 1.82
7201 7297 7.175119 GGAAATGTTAAGCTACCAGAAGAAACT 59.825 37.037 0.00 0.00 0.00 2.66
7204 7300 6.769512 TGTTAAGCTACCAGAAGAAACTGAT 58.230 36.000 0.00 0.00 39.94 2.90
7215 7314 8.203485 ACCAGAAGAAACTGATAGATGAAGATC 58.797 37.037 0.00 0.00 39.94 2.75
7229 7328 2.030893 TGAAGATCTTGCGGCAGTTTTG 60.031 45.455 14.00 0.00 0.00 2.44
7234 7333 0.854705 CTTGCGGCAGTTTTGAAAGC 59.145 50.000 1.67 0.00 0.00 3.51
7235 7334 0.529555 TTGCGGCAGTTTTGAAAGCC 60.530 50.000 1.67 0.00 43.61 4.35
7236 7335 1.664649 GCGGCAGTTTTGAAAGCCC 60.665 57.895 0.00 0.00 44.18 5.19
7237 7336 2.041153 CGGCAGTTTTGAAAGCCCT 58.959 52.632 1.68 0.00 44.18 5.19
7240 7343 0.104671 GCAGTTTTGAAAGCCCTGCA 59.895 50.000 16.29 0.00 45.94 4.41
7241 7344 1.856802 CAGTTTTGAAAGCCCTGCAC 58.143 50.000 0.00 0.00 0.00 4.57
7255 7358 0.530744 CTGCACTTCAGGCATTGCAT 59.469 50.000 11.39 0.00 43.74 3.96
7258 7361 0.099968 CACTTCAGGCATTGCATCCG 59.900 55.000 11.39 0.00 0.00 4.18
7268 7371 0.532115 ATTGCATCCGGTTTTCTGGC 59.468 50.000 0.00 0.00 45.57 4.85
7269 7372 0.539438 TTGCATCCGGTTTTCTGGCT 60.539 50.000 0.00 0.00 45.57 4.75
7272 7375 1.402852 GCATCCGGTTTTCTGGCTTTC 60.403 52.381 0.00 0.00 45.57 2.62
7275 7378 0.887387 CCGGTTTTCTGGCTTTCGGA 60.887 55.000 0.00 0.00 39.73 4.55
7276 7379 0.517316 CGGTTTTCTGGCTTTCGGAG 59.483 55.000 0.00 0.00 31.44 4.63
7277 7380 1.876416 CGGTTTTCTGGCTTTCGGAGA 60.876 52.381 0.00 0.00 31.44 3.71
7279 7382 2.226674 GGTTTTCTGGCTTTCGGAGAAG 59.773 50.000 0.00 0.00 45.90 2.85
7280 7383 3.139077 GTTTTCTGGCTTTCGGAGAAGA 58.861 45.455 4.74 0.00 45.90 2.87
7281 7384 3.485463 TTTCTGGCTTTCGGAGAAGAA 57.515 42.857 4.74 0.00 45.90 2.52
7282 7385 2.751166 TCTGGCTTTCGGAGAAGAAG 57.249 50.000 4.74 0.00 45.90 2.85
7283 7386 1.082690 CTGGCTTTCGGAGAAGAAGC 58.917 55.000 4.02 4.02 45.90 3.86
7284 7387 0.396435 TGGCTTTCGGAGAAGAAGCA 59.604 50.000 12.65 0.00 45.90 3.91
7285 7388 1.202758 TGGCTTTCGGAGAAGAAGCAA 60.203 47.619 12.65 0.62 45.90 3.91
7286 7389 1.197949 GGCTTTCGGAGAAGAAGCAAC 59.802 52.381 12.65 0.00 45.90 4.17
7287 7390 1.197949 GCTTTCGGAGAAGAAGCAACC 59.802 52.381 7.15 0.00 45.90 3.77
7288 7391 1.807142 CTTTCGGAGAAGAAGCAACCC 59.193 52.381 0.00 0.00 45.90 4.11
7289 7392 1.056660 TTCGGAGAAGAAGCAACCCT 58.943 50.000 0.00 0.00 45.90 4.34
7290 7393 0.321671 TCGGAGAAGAAGCAACCCTG 59.678 55.000 0.00 0.00 0.00 4.45
7292 7395 1.528129 GGAGAAGAAGCAACCCTGTG 58.472 55.000 0.00 0.00 0.00 3.66
7293 7396 0.877743 GAGAAGAAGCAACCCTGTGC 59.122 55.000 0.00 0.00 45.28 4.57
7322 7429 3.632145 GTGAAAGAGAAGAAAAGTGCCCA 59.368 43.478 0.00 0.00 0.00 5.36
7398 7507 4.141620 GCATGGAAGGATAAGGAGAAGACA 60.142 45.833 0.00 0.00 0.00 3.41
7418 7527 5.723887 AGACACTCTAGGATTTCAGTGGAAT 59.276 40.000 10.68 0.00 40.57 3.01
7422 7531 8.643324 ACACTCTAGGATTTCAGTGGAATATAC 58.357 37.037 10.68 0.00 40.57 1.47
7424 7533 8.865090 ACTCTAGGATTTCAGTGGAATATACTG 58.135 37.037 0.00 0.00 45.30 2.74
7431 7540 5.219343 TCAGTGGAATATACTGCATCAGG 57.781 43.478 0.00 0.00 43.97 3.86
7432 7541 3.750130 CAGTGGAATATACTGCATCAGGC 59.250 47.826 0.00 0.00 39.09 4.85
7450 7563 1.472276 GCGTATCGTTGCTCACTCGG 61.472 60.000 0.00 0.00 0.00 4.63
7456 7569 1.271379 TCGTTGCTCACTCGGTACATT 59.729 47.619 0.00 0.00 0.00 2.71
7458 7571 2.852413 CGTTGCTCACTCGGTACATTAG 59.148 50.000 0.00 0.00 0.00 1.73
7471 7585 5.126061 TCGGTACATTAGTTAGTGACCTTCC 59.874 44.000 0.00 0.00 0.00 3.46
7472 7586 5.126707 CGGTACATTAGTTAGTGACCTTCCT 59.873 44.000 0.00 0.00 0.00 3.36
7473 7587 6.350780 CGGTACATTAGTTAGTGACCTTCCTT 60.351 42.308 0.00 0.00 0.00 3.36
7474 7588 6.817140 GGTACATTAGTTAGTGACCTTCCTTG 59.183 42.308 0.00 0.00 0.00 3.61
7508 7622 8.692110 TTGTATCTTTTGCTTTCATTATGCAG 57.308 30.769 0.00 0.00 38.07 4.41
7509 7623 8.054152 TGTATCTTTTGCTTTCATTATGCAGA 57.946 30.769 0.00 0.00 38.07 4.26
7510 7624 7.970061 TGTATCTTTTGCTTTCATTATGCAGAC 59.030 33.333 0.00 0.00 38.07 3.51
7511 7625 6.330004 TCTTTTGCTTTCATTATGCAGACA 57.670 33.333 0.00 0.00 38.07 3.41
7516 7630 6.954616 TGCTTTCATTATGCAGACATTTTG 57.045 33.333 0.00 0.00 37.74 2.44
7521 7635 4.948576 TGCAGACATTTTGCAGCG 57.051 50.000 0.00 0.00 45.89 5.18
7542 7668 9.450807 GCAGCGTGTTAAATCTGATATTTATTT 57.549 29.630 0.00 0.00 0.00 1.40
7550 7676 9.944663 TTAAATCTGATATTTATTTGTGTCGGC 57.055 29.630 0.00 0.00 0.00 5.54
7551 7677 7.807977 AATCTGATATTTATTTGTGTCGGCT 57.192 32.000 0.00 0.00 0.00 5.52
7556 7682 1.717194 TTATTTGTGTCGGCTCGGTC 58.283 50.000 0.00 0.00 0.00 4.79
7561 7687 0.604073 TGTGTCGGCTCGGTCATTTA 59.396 50.000 0.00 0.00 0.00 1.40
7565 7691 3.673809 GTGTCGGCTCGGTCATTTATATC 59.326 47.826 0.00 0.00 0.00 1.63
7574 7700 9.262358 GGCTCGGTCATTTATATCCTAATATTC 57.738 37.037 0.00 0.00 30.59 1.75
7578 7704 9.797556 CGGTCATTTATATCCTAATATTCGACA 57.202 33.333 0.00 0.00 30.59 4.35
7593 7719 8.694975 AATATTCGACATCATATCACTGTAGC 57.305 34.615 0.00 0.00 0.00 3.58
7594 7720 5.774498 TTCGACATCATATCACTGTAGCT 57.226 39.130 0.00 0.00 0.00 3.32
7595 7721 5.113502 TCGACATCATATCACTGTAGCTG 57.886 43.478 0.00 0.00 0.00 4.24
7599 7725 6.744993 CGACATCATATCACTGTAGCTGTATC 59.255 42.308 0.00 0.00 0.00 2.24
7600 7726 7.530426 ACATCATATCACTGTAGCTGTATCA 57.470 36.000 0.00 0.00 0.00 2.15
7602 7728 7.232330 ACATCATATCACTGTAGCTGTATCAGT 59.768 37.037 0.00 3.18 42.14 3.41
7604 7730 8.011844 TCATATCACTGTAGCTGTATCAGTTT 57.988 34.615 0.00 0.00 39.89 2.66
7605 7731 8.478066 TCATATCACTGTAGCTGTATCAGTTTT 58.522 33.333 0.00 0.00 39.89 2.43
7606 7732 9.102757 CATATCACTGTAGCTGTATCAGTTTTT 57.897 33.333 0.00 0.00 39.89 1.94
7627 7815 5.986501 TTTTAGAACCCCGCATATGTTTT 57.013 34.783 4.29 0.00 0.00 2.43
7662 7850 4.244862 GTTATTTCCTTTGGTGCATGTGG 58.755 43.478 0.00 0.00 0.00 4.17
7729 7929 2.568623 AGATTCAACTGGACCGCTTT 57.431 45.000 0.00 0.00 0.00 3.51
7753 7954 5.428457 TGAACAGCCCCTCTTAATTATGAGA 59.572 40.000 23.34 8.01 32.44 3.27
7756 7957 7.633018 ACAGCCCCTCTTAATTATGAGAATA 57.367 36.000 23.34 0.00 32.44 1.75
7757 7958 7.454225 ACAGCCCCTCTTAATTATGAGAATAC 58.546 38.462 23.34 12.92 32.44 1.89
7778 8007 0.874390 TGCGAGAACTCACAAATGCC 59.126 50.000 2.78 0.00 0.00 4.40
7786 8025 0.038892 CTCACAAATGCCAGTGCCAC 60.039 55.000 0.00 0.00 35.76 5.01
7820 8059 1.930656 CCCCCACCCCTCACTCATT 60.931 63.158 0.00 0.00 0.00 2.57
7826 8065 2.548067 CCACCCCTCACTCATTATACGC 60.548 54.545 0.00 0.00 0.00 4.42
7874 8113 1.628340 CATACCCAGGTTGGTGTCTCA 59.372 52.381 0.00 0.00 39.53 3.27
7881 8120 3.428862 CCAGGTTGGTGTCTCAAACAAAC 60.429 47.826 0.00 0.00 40.31 2.93
7882 8121 3.192422 CAGGTTGGTGTCTCAAACAAACA 59.808 43.478 0.00 0.00 40.31 2.83
7883 8122 3.829601 AGGTTGGTGTCTCAAACAAACAA 59.170 39.130 0.00 0.00 40.31 2.83
7884 8123 4.282195 AGGTTGGTGTCTCAAACAAACAAA 59.718 37.500 0.00 0.00 40.31 2.83
7886 8125 5.107259 GGTTGGTGTCTCAAACAAACAAAAC 60.107 40.000 0.00 0.00 40.31 2.43
7888 8127 5.465935 TGGTGTCTCAAACAAACAAAACTC 58.534 37.500 0.00 0.00 40.31 3.01
7889 8128 5.010112 TGGTGTCTCAAACAAACAAAACTCA 59.990 36.000 0.00 0.00 40.31 3.41
7891 8130 6.589907 GGTGTCTCAAACAAACAAAACTCAAT 59.410 34.615 0.00 0.00 40.31 2.57
7895 8150 4.328440 TCAAACAAACAAAACTCAATGCCG 59.672 37.500 0.00 0.00 0.00 5.69
7900 8155 2.020720 ACAAAACTCAATGCCGTGACA 58.979 42.857 0.00 0.00 0.00 3.58
7915 8170 2.742053 CGTGACACTGGTTAGGAAATGG 59.258 50.000 3.68 0.00 0.00 3.16
8063 8368 7.711339 CAGGAATAATGACCCAACTACTAGTTC 59.289 40.741 0.00 0.00 36.03 3.01
8065 8370 8.211629 GGAATAATGACCCAACTACTAGTTCAT 58.788 37.037 0.00 0.00 36.03 2.57
8081 8386 0.610174 TCATCAGAGCAGTGGTCCAC 59.390 55.000 18.47 14.68 34.10 4.02
8088 8393 0.773644 AGCAGTGGTCCACATTCCTT 59.226 50.000 24.02 0.00 36.74 3.36
8098 8403 4.262036 GGTCCACATTCCTTTTTCACCTTC 60.262 45.833 0.00 0.00 0.00 3.46
8103 8408 4.218417 ACATTCCTTTTTCACCTTCCATCG 59.782 41.667 0.00 0.00 0.00 3.84
8107 8412 1.153353 TTTTCACCTTCCATCGTCGC 58.847 50.000 0.00 0.00 0.00 5.19
8121 8432 4.451150 TCGCGCCACTCCATCCAC 62.451 66.667 0.00 0.00 0.00 4.02
8132 8443 3.058016 CACTCCATCCACACACACATTTC 60.058 47.826 0.00 0.00 0.00 2.17
8134 8445 1.199789 CCATCCACACACACATTTCCG 59.800 52.381 0.00 0.00 0.00 4.30
8204 8515 5.923733 ACAGATTGGTTGGTTTACACAAA 57.076 34.783 0.00 0.00 0.00 2.83
8205 8516 5.901552 ACAGATTGGTTGGTTTACACAAAG 58.098 37.500 0.00 0.00 0.00 2.77
8207 8518 5.977129 CAGATTGGTTGGTTTACACAAAGAC 59.023 40.000 0.00 0.00 0.00 3.01
8210 8521 5.723672 TGGTTGGTTTACACAAAGACAAA 57.276 34.783 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.481028 CAGCGCTCGATTTCAAATTGATG 59.519 43.478 7.13 0.00 0.00 3.07
1 2 3.374988 TCAGCGCTCGATTTCAAATTGAT 59.625 39.130 7.13 0.00 0.00 2.57
29 30 1.215647 GTGTCTTCCTCGTCCGCAT 59.784 57.895 0.00 0.00 0.00 4.73
48 49 3.335356 ATTGGCCTCCGCTCTGGTG 62.335 63.158 3.32 0.00 39.52 4.17
49 50 3.011517 ATTGGCCTCCGCTCTGGT 61.012 61.111 3.32 0.00 39.52 4.00
57 58 2.190578 CTCCGTCCATTGGCCTCC 59.809 66.667 3.32 0.00 0.00 4.30
64 65 1.765314 CATCTCCTTCCTCCGTCCATT 59.235 52.381 0.00 0.00 0.00 3.16
65 66 1.418334 CATCTCCTTCCTCCGTCCAT 58.582 55.000 0.00 0.00 0.00 3.41
66 67 1.330655 GCATCTCCTTCCTCCGTCCA 61.331 60.000 0.00 0.00 0.00 4.02
74 79 2.107141 CGTCCCGCATCTCCTTCC 59.893 66.667 0.00 0.00 0.00 3.46
96 101 2.886124 GCCTCTGCCTACGCGTTC 60.886 66.667 20.78 8.07 38.08 3.95
138 143 2.159310 CGAGCAAGCTAGCTAACTGAGT 60.159 50.000 19.70 3.83 46.75 3.41
140 145 1.469940 GCGAGCAAGCTAGCTAACTGA 60.470 52.381 19.70 0.00 46.75 3.41
142 147 0.532573 TGCGAGCAAGCTAGCTAACT 59.467 50.000 19.70 18.11 46.75 2.24
143 148 0.926846 CTGCGAGCAAGCTAGCTAAC 59.073 55.000 19.70 13.25 46.75 2.34
144 149 0.532573 ACTGCGAGCAAGCTAGCTAA 59.467 50.000 19.70 7.66 46.75 3.09
145 150 1.335182 CTACTGCGAGCAAGCTAGCTA 59.665 52.381 19.70 11.04 46.75 3.32
149 154 1.676529 CTACCTACTGCGAGCAAGCTA 59.323 52.381 0.00 0.00 38.13 3.32
150 155 0.457851 CTACCTACTGCGAGCAAGCT 59.542 55.000 0.00 0.00 38.13 3.74
152 157 0.457851 AGCTACCTACTGCGAGCAAG 59.542 55.000 0.00 0.00 37.40 4.01
153 158 1.676529 CTAGCTACCTACTGCGAGCAA 59.323 52.381 0.00 0.00 37.40 3.91
155 160 0.039888 GCTAGCTACCTACTGCGAGC 60.040 60.000 7.70 4.56 46.69 5.03
159 164 1.410882 AGCAAGCTAGCTACCTACTGC 59.589 52.381 23.24 23.24 44.50 4.40
160 165 2.287308 CGAGCAAGCTAGCTACCTACTG 60.287 54.545 19.70 12.58 46.75 2.74
161 166 1.950909 CGAGCAAGCTAGCTACCTACT 59.049 52.381 19.70 10.91 46.75 2.57
162 167 1.600912 GCGAGCAAGCTAGCTACCTAC 60.601 57.143 19.70 9.08 46.75 3.18
163 168 0.669077 GCGAGCAAGCTAGCTACCTA 59.331 55.000 19.70 0.00 46.75 3.08
164 169 1.323271 TGCGAGCAAGCTAGCTACCT 61.323 55.000 19.70 16.81 46.75 3.08
166 171 1.135867 GATGCGAGCAAGCTAGCTAC 58.864 55.000 19.70 13.64 46.75 3.58
218 233 2.393768 CCGTTGATGCGAGCAAGCT 61.394 57.895 0.57 0.00 38.13 3.74
221 236 3.430862 GCCCGTTGATGCGAGCAA 61.431 61.111 0.57 0.00 35.67 3.91
222 237 4.695993 TGCCCGTTGATGCGAGCA 62.696 61.111 0.00 0.00 42.94 4.26
226 241 3.853330 CGTCTGCCCGTTGATGCG 61.853 66.667 0.00 0.00 0.00 4.73
227 242 3.499737 CCGTCTGCCCGTTGATGC 61.500 66.667 0.00 0.00 0.00 3.91
228 243 2.819595 CCCGTCTGCCCGTTGATG 60.820 66.667 0.00 0.00 0.00 3.07
229 244 4.778143 GCCCGTCTGCCCGTTGAT 62.778 66.667 0.00 0.00 0.00 2.57
318 333 2.825532 GCTAGCAGTTGGGGAATTTCAA 59.174 45.455 10.63 0.00 0.00 2.69
340 355 2.582636 AGGGCCCTGAATAACAGTCAAT 59.417 45.455 28.05 0.00 44.40 2.57
383 398 1.339727 GCCCAAGACCCGTGTATCTTT 60.340 52.381 0.00 0.00 32.77 2.52
399 414 0.897863 GCCCAGTAAACACATGCCCA 60.898 55.000 0.00 0.00 0.00 5.36
429 444 9.762933 CTCTTAAAATCATTCAACCCTTCAAAA 57.237 29.630 0.00 0.00 0.00 2.44
430 445 9.142014 TCTCTTAAAATCATTCAACCCTTCAAA 57.858 29.630 0.00 0.00 0.00 2.69
431 446 8.704849 TCTCTTAAAATCATTCAACCCTTCAA 57.295 30.769 0.00 0.00 0.00 2.69
432 447 8.884124 ATCTCTTAAAATCATTCAACCCTTCA 57.116 30.769 0.00 0.00 0.00 3.02
433 448 9.183368 AGATCTCTTAAAATCATTCAACCCTTC 57.817 33.333 0.00 0.00 0.00 3.46
434 449 8.964772 CAGATCTCTTAAAATCATTCAACCCTT 58.035 33.333 0.00 0.00 0.00 3.95
435 450 8.112183 ACAGATCTCTTAAAATCATTCAACCCT 58.888 33.333 0.00 0.00 0.00 4.34
436 451 8.286191 ACAGATCTCTTAAAATCATTCAACCC 57.714 34.615 0.00 0.00 0.00 4.11
437 452 9.780413 GAACAGATCTCTTAAAATCATTCAACC 57.220 33.333 0.00 0.00 0.00 3.77
438 453 9.483062 CGAACAGATCTCTTAAAATCATTCAAC 57.517 33.333 0.00 0.00 0.00 3.18
439 454 8.668353 CCGAACAGATCTCTTAAAATCATTCAA 58.332 33.333 0.00 0.00 0.00 2.69
440 455 7.280876 CCCGAACAGATCTCTTAAAATCATTCA 59.719 37.037 0.00 0.00 0.00 2.57
441 456 7.281100 ACCCGAACAGATCTCTTAAAATCATTC 59.719 37.037 0.00 0.00 0.00 2.67
442 457 7.112779 ACCCGAACAGATCTCTTAAAATCATT 58.887 34.615 0.00 0.00 0.00 2.57
443 458 6.653989 ACCCGAACAGATCTCTTAAAATCAT 58.346 36.000 0.00 0.00 0.00 2.45
444 459 6.049955 ACCCGAACAGATCTCTTAAAATCA 57.950 37.500 0.00 0.00 0.00 2.57
445 460 6.237861 CGAACCCGAACAGATCTCTTAAAATC 60.238 42.308 0.00 0.00 38.22 2.17
446 461 5.581085 CGAACCCGAACAGATCTCTTAAAAT 59.419 40.000 0.00 0.00 38.22 1.82
447 462 4.927425 CGAACCCGAACAGATCTCTTAAAA 59.073 41.667 0.00 0.00 38.22 1.52
448 463 4.021719 ACGAACCCGAACAGATCTCTTAAA 60.022 41.667 0.00 0.00 39.50 1.52
449 464 3.508793 ACGAACCCGAACAGATCTCTTAA 59.491 43.478 0.00 0.00 39.50 1.85
450 465 3.087031 ACGAACCCGAACAGATCTCTTA 58.913 45.455 0.00 0.00 39.50 2.10
451 466 1.893801 ACGAACCCGAACAGATCTCTT 59.106 47.619 0.00 0.00 39.50 2.85
452 467 1.546961 ACGAACCCGAACAGATCTCT 58.453 50.000 0.00 0.00 39.50 3.10
453 468 2.365408 AACGAACCCGAACAGATCTC 57.635 50.000 0.00 0.00 39.50 2.75
454 469 2.833631 AAACGAACCCGAACAGATCT 57.166 45.000 0.00 0.00 39.50 2.75
455 470 3.891056 AAAAACGAACCCGAACAGATC 57.109 42.857 0.00 0.00 39.50 2.75
473 488 7.652507 ACCGTTTTTCACAGTTTCAGTTAAAAA 59.347 29.630 0.00 0.00 32.67 1.94
474 489 7.146648 ACCGTTTTTCACAGTTTCAGTTAAAA 58.853 30.769 0.00 0.00 0.00 1.52
475 490 6.679843 ACCGTTTTTCACAGTTTCAGTTAAA 58.320 32.000 0.00 0.00 0.00 1.52
476 491 6.256912 ACCGTTTTTCACAGTTTCAGTTAA 57.743 33.333 0.00 0.00 0.00 2.01
477 492 5.883503 ACCGTTTTTCACAGTTTCAGTTA 57.116 34.783 0.00 0.00 0.00 2.24
478 493 4.776795 ACCGTTTTTCACAGTTTCAGTT 57.223 36.364 0.00 0.00 0.00 3.16
479 494 4.776795 AACCGTTTTTCACAGTTTCAGT 57.223 36.364 0.00 0.00 0.00 3.41
480 495 7.749539 AAATAACCGTTTTTCACAGTTTCAG 57.250 32.000 0.00 0.00 0.00 3.02
481 496 9.074443 GTAAAATAACCGTTTTTCACAGTTTCA 57.926 29.630 0.00 0.00 33.62 2.69
482 497 9.292846 AGTAAAATAACCGTTTTTCACAGTTTC 57.707 29.630 0.00 0.00 33.62 2.78
483 498 9.078753 CAGTAAAATAACCGTTTTTCACAGTTT 57.921 29.630 0.00 0.00 33.62 2.66
484 499 7.703197 CCAGTAAAATAACCGTTTTTCACAGTT 59.297 33.333 0.00 0.00 33.62 3.16
485 500 7.148035 ACCAGTAAAATAACCGTTTTTCACAGT 60.148 33.333 0.00 0.00 33.62 3.55
486 501 7.197703 ACCAGTAAAATAACCGTTTTTCACAG 58.802 34.615 0.00 0.00 33.62 3.66
487 502 7.098074 ACCAGTAAAATAACCGTTTTTCACA 57.902 32.000 0.00 0.00 33.62 3.58
488 503 7.990541 AACCAGTAAAATAACCGTTTTTCAC 57.009 32.000 0.00 0.00 33.62 3.18
489 504 8.248945 TCAAACCAGTAAAATAACCGTTTTTCA 58.751 29.630 0.00 0.00 33.62 2.69
490 505 8.533965 GTCAAACCAGTAAAATAACCGTTTTTC 58.466 33.333 0.00 0.00 33.62 2.29
491 506 7.492020 GGTCAAACCAGTAAAATAACCGTTTTT 59.508 33.333 0.00 0.00 38.42 1.94
492 507 6.979817 GGTCAAACCAGTAAAATAACCGTTTT 59.020 34.615 0.00 0.00 38.42 2.43
493 508 6.096564 TGGTCAAACCAGTAAAATAACCGTTT 59.903 34.615 0.00 0.00 44.79 3.60
494 509 5.593502 TGGTCAAACCAGTAAAATAACCGTT 59.406 36.000 0.00 0.00 44.79 4.44
495 510 5.131784 TGGTCAAACCAGTAAAATAACCGT 58.868 37.500 0.00 0.00 44.79 4.83
496 511 5.692613 TGGTCAAACCAGTAAAATAACCG 57.307 39.130 0.00 0.00 44.79 4.44
509 524 4.204799 GACCCCATATAAGTGGTCAAACC 58.795 47.826 4.93 0.00 45.29 3.27
514 529 3.046374 ACCAGACCCCATATAAGTGGTC 58.954 50.000 1.78 1.78 46.12 4.02
515 530 3.145559 ACCAGACCCCATATAAGTGGT 57.854 47.619 0.00 0.00 37.57 4.16
516 531 4.489737 TCTACCAGACCCCATATAAGTGG 58.510 47.826 0.00 0.00 39.05 4.00
517 532 5.394738 TCTCTACCAGACCCCATATAAGTG 58.605 45.833 0.00 0.00 0.00 3.16
518 533 5.681494 TCTCTACCAGACCCCATATAAGT 57.319 43.478 0.00 0.00 0.00 2.24
519 534 5.105146 GCATCTCTACCAGACCCCATATAAG 60.105 48.000 0.00 0.00 32.26 1.73
520 535 4.777896 GCATCTCTACCAGACCCCATATAA 59.222 45.833 0.00 0.00 32.26 0.98
521 536 4.045974 AGCATCTCTACCAGACCCCATATA 59.954 45.833 0.00 0.00 32.26 0.86
522 537 3.177228 GCATCTCTACCAGACCCCATAT 58.823 50.000 0.00 0.00 32.26 1.78
523 538 2.180086 AGCATCTCTACCAGACCCCATA 59.820 50.000 0.00 0.00 32.26 2.74
524 539 1.061812 AGCATCTCTACCAGACCCCAT 60.062 52.381 0.00 0.00 32.26 4.00
525 540 0.339859 AGCATCTCTACCAGACCCCA 59.660 55.000 0.00 0.00 32.26 4.96
526 541 1.044611 GAGCATCTCTACCAGACCCC 58.955 60.000 0.00 0.00 32.26 4.95
532 547 7.179338 AGAAAACTTCTTAGAGCATCTCTACCA 59.821 37.037 3.26 0.00 37.66 3.25
533 548 7.552459 AGAAAACTTCTTAGAGCATCTCTACC 58.448 38.462 3.26 0.00 37.66 3.18
534 549 9.511144 GTAGAAAACTTCTTAGAGCATCTCTAC 57.489 37.037 3.26 6.94 41.99 2.59
535 550 9.244292 TGTAGAAAACTTCTTAGAGCATCTCTA 57.756 33.333 0.00 0.00 42.72 2.43
536 551 8.128322 TGTAGAAAACTTCTTAGAGCATCTCT 57.872 34.615 1.71 1.71 42.72 3.10
537 552 8.764524 TTGTAGAAAACTTCTTAGAGCATCTC 57.235 34.615 0.00 0.00 42.72 2.75
538 553 9.732130 ATTTGTAGAAAACTTCTTAGAGCATCT 57.268 29.630 0.00 0.00 44.69 2.90
539 554 9.766277 CATTTGTAGAAAACTTCTTAGAGCATC 57.234 33.333 0.00 0.00 41.14 3.91
540 555 9.289782 ACATTTGTAGAAAACTTCTTAGAGCAT 57.710 29.630 0.00 0.00 41.14 3.79
541 556 8.559536 CACATTTGTAGAAAACTTCTTAGAGCA 58.440 33.333 0.00 0.00 41.14 4.26
542 557 8.560374 ACACATTTGTAGAAAACTTCTTAGAGC 58.440 33.333 0.00 0.00 41.14 4.09
559 574 5.415701 CCCTATCACTTTGCTACACATTTGT 59.584 40.000 0.00 0.00 40.02 2.83
568 583 5.482526 TGTAAGACACCCTATCACTTTGCTA 59.517 40.000 0.00 0.00 0.00 3.49
580 595 2.583143 GGCAGTTTTGTAAGACACCCT 58.417 47.619 0.00 0.00 0.00 4.34
584 599 2.691011 GTTGGGGCAGTTTTGTAAGACA 59.309 45.455 0.00 0.00 0.00 3.41
585 600 2.035449 GGTTGGGGCAGTTTTGTAAGAC 59.965 50.000 0.00 0.00 0.00 3.01
586 601 2.091555 AGGTTGGGGCAGTTTTGTAAGA 60.092 45.455 0.00 0.00 0.00 2.10
587 602 2.316108 AGGTTGGGGCAGTTTTGTAAG 58.684 47.619 0.00 0.00 0.00 2.34
588 603 2.463047 AGGTTGGGGCAGTTTTGTAA 57.537 45.000 0.00 0.00 0.00 2.41
590 605 2.110011 AGATAGGTTGGGGCAGTTTTGT 59.890 45.455 0.00 0.00 0.00 2.83
591 606 2.493278 CAGATAGGTTGGGGCAGTTTTG 59.507 50.000 0.00 0.00 0.00 2.44
592 607 2.807676 CAGATAGGTTGGGGCAGTTTT 58.192 47.619 0.00 0.00 0.00 2.43
596 611 1.152881 GGCAGATAGGTTGGGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
597 612 1.928046 TGGCAGATAGGTTGGGGCA 60.928 57.895 0.00 0.00 0.00 5.36
598 613 1.453928 GTGGCAGATAGGTTGGGGC 60.454 63.158 0.00 0.00 0.00 5.80
599 614 1.153168 CGTGGCAGATAGGTTGGGG 60.153 63.158 0.00 0.00 0.00 4.96
601 616 2.173669 CGCGTGGCAGATAGGTTGG 61.174 63.158 0.00 0.00 0.00 3.77
603 618 0.533491 TAACGCGTGGCAGATAGGTT 59.467 50.000 14.98 0.00 0.00 3.50
605 620 0.384309 TCTAACGCGTGGCAGATAGG 59.616 55.000 14.98 0.00 0.00 2.57
606 621 2.054363 CATCTAACGCGTGGCAGATAG 58.946 52.381 23.03 15.99 0.00 2.08
607 622 1.407618 ACATCTAACGCGTGGCAGATA 59.592 47.619 23.03 8.11 0.00 1.98
612 629 2.347292 CGATTTACATCTAACGCGTGGC 60.347 50.000 14.98 0.00 0.00 5.01
613 630 2.217847 CCGATTTACATCTAACGCGTGG 59.782 50.000 14.98 9.60 0.00 4.94
616 633 3.121279 CCATCCGATTTACATCTAACGCG 59.879 47.826 3.53 3.53 0.00 6.01
626 643 6.483307 TCATCATTTCTGACCATCCGATTTAC 59.517 38.462 0.00 0.00 33.22 2.01
627 644 6.483307 GTCATCATTTCTGACCATCCGATTTA 59.517 38.462 0.00 0.00 37.61 1.40
649 666 0.168788 GATGTACCCGTCGTTCGTCA 59.831 55.000 0.00 0.00 37.94 4.35
651 668 0.813184 ATGATGTACCCGTCGTTCGT 59.187 50.000 0.00 0.00 37.94 3.85
652 669 1.065102 AGATGATGTACCCGTCGTTCG 59.935 52.381 0.00 0.00 39.52 3.95
653 670 2.865343 AGATGATGTACCCGTCGTTC 57.135 50.000 0.00 0.00 0.00 3.95
662 679 5.551760 CCAAGTTGGTGAAGATGATGTAC 57.448 43.478 14.21 0.00 31.35 2.90
682 699 2.560981 TCTCTGCTCATACAAACGACCA 59.439 45.455 0.00 0.00 0.00 4.02
694 711 4.883585 AGTGTTTTGTCATTTCTCTGCTCA 59.116 37.500 0.00 0.00 0.00 4.26
709 727 9.753669 GTTTTGTATTTTTCTTGGAGTGTTTTG 57.246 29.630 0.00 0.00 0.00 2.44
710 728 9.495572 TGTTTTGTATTTTTCTTGGAGTGTTTT 57.504 25.926 0.00 0.00 0.00 2.43
735 753 1.437160 GGTTGTGTTGCCACCACTG 59.563 57.895 0.00 0.00 41.09 3.66
742 760 1.745232 TATCCATCGGTTGTGTTGCC 58.255 50.000 0.00 0.00 0.00 4.52
744 762 2.945008 AGCATATCCATCGGTTGTGTTG 59.055 45.455 0.00 0.00 0.00 3.33
812 832 1.327292 GGTTTCGTGTGCGCATTTCG 61.327 55.000 15.91 18.57 42.12 3.46
814 834 1.007849 GGGTTTCGTGTGCGCATTT 60.008 52.632 15.91 0.00 38.14 2.32
817 837 4.858680 TGGGGTTTCGTGTGCGCA 62.859 61.111 5.66 5.66 38.14 6.09
1578 1599 0.759436 GCCGTATTCCTCCTCCTCCA 60.759 60.000 0.00 0.00 0.00 3.86
1757 1790 2.879002 ATAGTCGATGCCTCACACTG 57.121 50.000 0.00 0.00 0.00 3.66
1868 1901 1.403972 GACGCTAACACCGCTCTTCG 61.404 60.000 0.00 0.00 38.08 3.79
1869 1902 1.403972 CGACGCTAACACCGCTCTTC 61.404 60.000 0.00 0.00 0.00 2.87
1953 1992 8.299262 ACATAAATCTGAAGTGTACGATATGC 57.701 34.615 0.00 0.00 0.00 3.14
2055 2097 3.813166 TGGAAACACCGAAAAGAGCTTAG 59.187 43.478 0.00 0.00 42.61 2.18
2085 2127 2.729360 TGTTTCATCACTACACGCGAAG 59.271 45.455 15.93 9.87 0.00 3.79
2129 2171 4.253685 AGCCATGTCACAATACACACTAC 58.746 43.478 0.00 0.00 30.75 2.73
2166 2208 2.040278 TGCTTCCTGGTATTCAGTGCTT 59.960 45.455 0.00 0.00 41.83 3.91
2176 2218 5.133941 TGTTACAAAACATGCTTCCTGGTA 58.866 37.500 0.00 0.00 40.69 3.25
2185 2227 6.198216 CAGGTTACAACTGTTACAAAACATGC 59.802 38.462 0.00 0.00 44.43 4.06
2207 2249 1.551430 TCATGGGAAATTGCTTGCAGG 59.449 47.619 0.00 0.00 0.00 4.85
2316 2362 0.953960 AGGATTTCGGTGTCGTTGGC 60.954 55.000 0.00 0.00 37.69 4.52
2328 2374 3.006247 GACTGCAGGAACAGAGGATTTC 58.994 50.000 19.93 0.00 40.25 2.17
2436 2482 3.287222 TGCACTTACAATAGCCCCATTC 58.713 45.455 0.00 0.00 0.00 2.67
2574 2620 7.451255 TGGTAGACATGTTTCCATTCAAAGATT 59.549 33.333 0.00 0.00 0.00 2.40
2767 2813 6.627243 TCTGAGCATGAATTTTGAGGAAATG 58.373 36.000 0.00 0.00 37.98 2.32
2800 2849 8.204836 AGACATAACTAAGGTATTGCAAGTAGG 58.795 37.037 4.94 0.00 0.00 3.18
2948 3000 2.729383 TAGCTGGATCCCATGGAGAT 57.271 50.000 15.22 14.26 34.05 2.75
3665 3719 1.065199 ACGTGATGATCAACATGCCCT 60.065 47.619 21.38 3.54 39.56 5.19
3779 3833 1.375326 GGTTCGGATATCCCCAGCC 59.625 63.158 16.36 10.40 0.00 4.85
4216 4270 3.504906 AGACAACATCAACAATCAGGCAG 59.495 43.478 0.00 0.00 0.00 4.85
4222 4276 4.732285 ACGTGAGACAACATCAACAATC 57.268 40.909 0.00 0.00 0.00 2.67
4230 4284 5.121768 GGTTTATTGCTACGTGAGACAACAT 59.878 40.000 0.00 0.00 0.00 2.71
4265 4319 0.249911 AGGTCAAGTGCAGGACGTTC 60.250 55.000 0.00 0.00 34.87 3.95
4608 4662 4.925054 CAGGCAACAAGACAAAACATATGG 59.075 41.667 7.80 0.00 41.41 2.74
4699 4768 4.345257 AGTCTATGTTGGCGGTGATTCTAT 59.655 41.667 0.00 0.00 0.00 1.98
5463 5549 3.747193 CCACATCAACATAACGCAGAAC 58.253 45.455 0.00 0.00 0.00 3.01
5464 5550 2.161410 GCCACATCAACATAACGCAGAA 59.839 45.455 0.00 0.00 0.00 3.02
5643 5729 3.947196 CTGATGGTTTTATACTGCAGGCA 59.053 43.478 19.93 5.62 0.00 4.75
5676 5763 8.421002 CCTCTTAGTGGAAGAAATTTGGAAAAA 58.579 33.333 0.00 0.00 43.75 1.94
5777 5866 9.064706 CAACCTGAAGATAATAGCATGAGAAAT 57.935 33.333 0.00 0.00 0.00 2.17
6017 6106 6.409704 AGCTGCATACAAAATGTTCTCTCTA 58.590 36.000 1.02 0.00 0.00 2.43
6019 6108 5.557891 AGCTGCATACAAAATGTTCTCTC 57.442 39.130 1.02 0.00 0.00 3.20
6021 6110 4.790140 CGAAGCTGCATACAAAATGTTCTC 59.210 41.667 1.02 0.00 0.00 2.87
6025 6114 3.501828 TCACGAAGCTGCATACAAAATGT 59.498 39.130 1.02 0.00 0.00 2.71
6096 6189 8.414778 GGAGTATATTAGATGCAGTATGGGTAC 58.585 40.741 0.00 0.00 35.86 3.34
6113 6206 3.339713 TTGGGACGGAGGGAGTATATT 57.660 47.619 0.00 0.00 0.00 1.28
6114 6207 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
6120 6213 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6121 6214 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6122 6215 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
6123 6216 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6124 6217 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
6125 6218 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
6126 6219 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
6127 6220 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
6129 6222 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
6151 6244 9.803315 GTGACTTGATACATCTGTATTTAGACA 57.197 33.333 14.44 12.43 40.99 3.41
6152 6245 9.803315 TGTGACTTGATACATCTGTATTTAGAC 57.197 33.333 14.44 10.85 40.99 2.59
6205 6298 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
6206 6299 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
6207 6300 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
6208 6301 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
6209 6302 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
6210 6303 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
6211 6304 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
6212 6305 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
6213 6306 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
6214 6307 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
6215 6308 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
6216 6309 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6217 6310 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
6218 6311 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6219 6312 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
6220 6313 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6221 6314 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6222 6315 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6223 6316 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6224 6317 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
6225 6318 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
6226 6319 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
6227 6320 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
6228 6321 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
6229 6322 2.169330 GATATGTACTCCCTCCGTCCC 58.831 57.143 0.00 0.00 0.00 4.46
6230 6323 2.820787 CAGATATGTACTCCCTCCGTCC 59.179 54.545 0.00 0.00 0.00 4.79
6231 6324 3.488363 ACAGATATGTACTCCCTCCGTC 58.512 50.000 0.00 0.00 0.00 4.79
6232 6325 3.596940 ACAGATATGTACTCCCTCCGT 57.403 47.619 0.00 0.00 0.00 4.69
6233 6326 6.208797 TCAAATACAGATATGTACTCCCTCCG 59.791 42.308 1.52 0.00 0.00 4.63
6234 6327 7.233757 AGTCAAATACAGATATGTACTCCCTCC 59.766 40.741 1.52 0.00 0.00 4.30
6235 6328 8.184304 AGTCAAATACAGATATGTACTCCCTC 57.816 38.462 1.52 0.00 0.00 4.30
6236 6329 8.424918 CAAGTCAAATACAGATATGTACTCCCT 58.575 37.037 1.52 0.00 0.00 4.20
6237 6330 8.421784 TCAAGTCAAATACAGATATGTACTCCC 58.578 37.037 1.52 0.00 0.00 4.30
6238 6331 9.817809 TTCAAGTCAAATACAGATATGTACTCC 57.182 33.333 1.52 0.00 0.00 3.85
6242 6335 9.083080 CGTGTTCAAGTCAAATACAGATATGTA 57.917 33.333 2.07 2.07 0.00 2.29
6243 6336 7.602644 ACGTGTTCAAGTCAAATACAGATATGT 59.397 33.333 0.00 0.00 0.00 2.29
6244 6337 7.963981 ACGTGTTCAAGTCAAATACAGATATG 58.036 34.615 0.00 0.00 0.00 1.78
6245 6338 8.443160 CAACGTGTTCAAGTCAAATACAGATAT 58.557 33.333 0.00 0.00 0.00 1.63
6246 6339 7.439955 ACAACGTGTTCAAGTCAAATACAGATA 59.560 33.333 0.00 0.00 0.00 1.98
6247 6340 6.260050 ACAACGTGTTCAAGTCAAATACAGAT 59.740 34.615 0.00 0.00 0.00 2.90
6252 6345 6.671614 AAGACAACGTGTTCAAGTCAAATA 57.328 33.333 0.00 0.00 0.00 1.40
6416 6509 9.627123 TGTCCTTAAAAGATACATAGGAAATGG 57.373 33.333 0.00 0.00 33.87 3.16
6520 6613 6.293790 GGTTCCTGTGGTAGTCAATAAACAAC 60.294 42.308 0.00 0.00 0.00 3.32
6547 6640 5.926542 GCCTCTTAAGAAAAATGTTGGGAAC 59.073 40.000 6.63 0.00 0.00 3.62
6604 6697 7.418337 AGGTTCTTTTGTTAGGTGAATTTGT 57.582 32.000 0.00 0.00 0.00 2.83
6665 6758 2.270434 TAGTGGGAGGGAGCAAAGAT 57.730 50.000 0.00 0.00 0.00 2.40
6666 6759 1.839994 CATAGTGGGAGGGAGCAAAGA 59.160 52.381 0.00 0.00 0.00 2.52
6708 6802 5.598830 TCGATAAAGAATTAGGCAGGTCTCT 59.401 40.000 0.00 0.00 0.00 3.10
6709 6803 5.692654 GTCGATAAAGAATTAGGCAGGTCTC 59.307 44.000 0.00 0.00 0.00 3.36
6710 6804 5.364157 AGTCGATAAAGAATTAGGCAGGTCT 59.636 40.000 0.00 0.00 0.00 3.85
6727 6821 3.845178 CTGCCACAAGTAACAGTCGATA 58.155 45.455 0.00 0.00 0.00 2.92
6855 6949 8.934023 TTGGGTTATGTAAGAACAGAGAAAAT 57.066 30.769 0.00 0.00 39.49 1.82
6859 6953 6.269077 TGACTTGGGTTATGTAAGAACAGAGA 59.731 38.462 0.00 0.00 39.49 3.10
6881 6975 1.834263 AGCTTACAGGGAGTCCATGAC 59.166 52.381 29.69 15.13 34.83 3.06
6895 6989 4.075682 AGAAAAGAAAGGCCAGAGCTTAC 58.924 43.478 5.01 1.75 39.73 2.34
6917 7011 7.824289 CCAATCCAGTGTGACTAGATAAGAAAA 59.176 37.037 0.00 0.00 26.70 2.29
6921 7015 6.227298 ACCAATCCAGTGTGACTAGATAAG 57.773 41.667 0.00 0.00 26.70 1.73
7042 7136 2.563179 CACTAGCAGAACAGGTGTAGGT 59.437 50.000 0.00 0.00 0.00 3.08
7043 7137 2.563179 ACACTAGCAGAACAGGTGTAGG 59.437 50.000 0.00 0.00 39.01 3.18
7044 7138 3.944055 ACACTAGCAGAACAGGTGTAG 57.056 47.619 0.00 0.00 39.01 2.74
7045 7139 5.715279 AGATAACACTAGCAGAACAGGTGTA 59.285 40.000 0.00 0.00 39.72 2.90
7046 7140 4.528596 AGATAACACTAGCAGAACAGGTGT 59.471 41.667 0.00 0.00 41.95 4.16
7047 7141 4.867047 CAGATAACACTAGCAGAACAGGTG 59.133 45.833 0.00 0.00 0.00 4.00
7052 7146 8.485976 AAAAGATCAGATAACACTAGCAGAAC 57.514 34.615 0.00 0.00 0.00 3.01
7079 7173 2.193306 AACACGCAAGCACAAGAAAG 57.807 45.000 0.00 0.00 45.62 2.62
7093 7189 1.914700 CAACGGAACAAACCAAACACG 59.085 47.619 0.00 0.00 0.00 4.49
7118 7214 1.135315 CGGGTCCAATCACAAATGCAG 60.135 52.381 0.00 0.00 0.00 4.41
7132 7228 0.811281 CTTTCCAAATCTGCGGGTCC 59.189 55.000 0.00 0.00 0.00 4.46
7174 7270 6.121776 TCTTCTGGTAGCTTAACATTTCCA 57.878 37.500 0.00 0.00 0.00 3.53
7201 7297 3.070015 TGCCGCAAGATCTTCATCTATCA 59.930 43.478 4.57 0.00 38.55 2.15
7204 7300 2.432146 ACTGCCGCAAGATCTTCATCTA 59.568 45.455 4.57 0.00 38.55 1.98
7215 7314 0.854705 GCTTTCAAAACTGCCGCAAG 59.145 50.000 0.00 0.00 0.00 4.01
7236 7335 1.961378 TGCAATGCCTGAAGTGCAG 59.039 52.632 1.53 0.00 41.85 4.41
7237 7336 4.177673 TGCAATGCCTGAAGTGCA 57.822 50.000 1.53 0.00 44.36 4.57
7240 7343 1.033746 CCGGATGCAATGCCTGAAGT 61.034 55.000 1.53 0.00 0.00 3.01
7241 7344 1.033746 ACCGGATGCAATGCCTGAAG 61.034 55.000 9.46 0.00 0.00 3.02
7251 7354 0.539438 AAGCCAGAAAACCGGATGCA 60.539 50.000 9.46 0.00 0.00 3.96
7255 7358 0.887387 CCGAAAGCCAGAAAACCGGA 60.887 55.000 9.46 0.00 37.87 5.14
7258 7361 1.892209 TCTCCGAAAGCCAGAAAACC 58.108 50.000 0.00 0.00 0.00 3.27
7268 7371 1.807142 GGGTTGCTTCTTCTCCGAAAG 59.193 52.381 0.00 0.00 0.00 2.62
7269 7372 1.420138 AGGGTTGCTTCTTCTCCGAAA 59.580 47.619 0.00 0.00 0.00 3.46
7272 7375 0.035458 ACAGGGTTGCTTCTTCTCCG 59.965 55.000 0.00 0.00 0.00 4.63
7275 7378 3.027419 GCACAGGGTTGCTTCTTCT 57.973 52.632 0.00 0.00 39.59 2.85
7282 7385 2.113986 AGACCAGCACAGGGTTGC 59.886 61.111 0.00 0.00 43.34 4.17
7283 7386 1.149174 ACAGACCAGCACAGGGTTG 59.851 57.895 0.00 0.00 39.19 3.77
7284 7387 1.149174 CACAGACCAGCACAGGGTT 59.851 57.895 0.00 0.00 39.19 4.11
7285 7388 1.344953 TTCACAGACCAGCACAGGGT 61.345 55.000 0.00 0.00 42.61 4.34
7286 7389 0.179020 TTTCACAGACCAGCACAGGG 60.179 55.000 0.00 0.00 0.00 4.45
7287 7390 1.202687 TCTTTCACAGACCAGCACAGG 60.203 52.381 0.00 0.00 0.00 4.00
7288 7391 2.141517 CTCTTTCACAGACCAGCACAG 58.858 52.381 0.00 0.00 0.00 3.66
7289 7392 1.762370 TCTCTTTCACAGACCAGCACA 59.238 47.619 0.00 0.00 0.00 4.57
7290 7393 2.533266 TCTCTTTCACAGACCAGCAC 57.467 50.000 0.00 0.00 0.00 4.40
7292 7395 3.393089 TCTTCTCTTTCACAGACCAGC 57.607 47.619 0.00 0.00 0.00 4.85
7293 7396 5.819901 ACTTTTCTTCTCTTTCACAGACCAG 59.180 40.000 0.00 0.00 0.00 4.00
7295 7398 5.504830 GCACTTTTCTTCTCTTTCACAGACC 60.505 44.000 0.00 0.00 0.00 3.85
7296 7399 5.504830 GGCACTTTTCTTCTCTTTCACAGAC 60.505 44.000 0.00 0.00 0.00 3.51
7322 7429 8.148999 AGTAAAAGACTCATCGAAAAGGTACTT 58.851 33.333 0.00 0.00 43.76 2.24
7371 7478 6.560304 TCTTCTCCTTATCCTTCCATGCTAAT 59.440 38.462 0.00 0.00 0.00 1.73
7398 7507 8.865090 CAGTATATTCCACTGAAATCCTAGAGT 58.135 37.037 0.00 0.00 45.10 3.24
7418 7527 2.817844 ACGATACGCCTGATGCAGTATA 59.182 45.455 0.00 0.00 38.71 1.47
7422 7531 0.578683 CAACGATACGCCTGATGCAG 59.421 55.000 0.00 0.00 41.33 4.41
7424 7533 1.154205 AGCAACGATACGCCTGATGC 61.154 55.000 0.00 0.00 0.00 3.91
7431 7540 1.472276 CCGAGTGAGCAACGATACGC 61.472 60.000 0.00 0.00 0.00 4.42
7432 7541 0.179171 ACCGAGTGAGCAACGATACG 60.179 55.000 0.00 0.00 0.00 3.06
7433 7542 2.159476 TGTACCGAGTGAGCAACGATAC 60.159 50.000 0.00 0.00 0.00 2.24
7440 7549 4.703575 ACTAACTAATGTACCGAGTGAGCA 59.296 41.667 4.06 0.00 0.00 4.26
7450 7563 6.817140 CCAAGGAAGGTCACTAACTAATGTAC 59.183 42.308 0.00 0.00 0.00 2.90
7456 7569 7.801893 TTATTCCAAGGAAGGTCACTAACTA 57.198 36.000 7.69 0.00 37.56 2.24
7458 7571 7.754851 TTTTATTCCAAGGAAGGTCACTAAC 57.245 36.000 7.69 0.00 37.56 2.34
7506 7620 2.124011 AACACGCTGCAAAATGTCTG 57.876 45.000 0.00 0.00 0.00 3.51
7508 7622 4.917415 AGATTTAACACGCTGCAAAATGTC 59.083 37.500 0.00 0.00 0.00 3.06
7509 7623 4.681025 CAGATTTAACACGCTGCAAAATGT 59.319 37.500 0.00 0.00 0.00 2.71
7510 7624 4.916831 TCAGATTTAACACGCTGCAAAATG 59.083 37.500 0.00 0.00 0.00 2.32
7511 7625 5.119931 TCAGATTTAACACGCTGCAAAAT 57.880 34.783 0.00 0.00 0.00 1.82
7516 7630 9.450807 AAATAAATATCAGATTTAACACGCTGC 57.549 29.630 0.00 0.00 0.00 5.25
7542 7668 0.604073 TAAATGACCGAGCCGACACA 59.396 50.000 0.00 0.00 0.00 3.72
7544 7670 3.305813 GGATATAAATGACCGAGCCGACA 60.306 47.826 0.00 0.00 0.00 4.35
7546 7672 3.162666 AGGATATAAATGACCGAGCCGA 58.837 45.455 0.00 0.00 0.00 5.54
7547 7673 3.594603 AGGATATAAATGACCGAGCCG 57.405 47.619 0.00 0.00 0.00 5.52
7548 7674 9.262358 GAATATTAGGATATAAATGACCGAGCC 57.738 37.037 0.00 0.00 0.00 4.70
7549 7675 8.969267 CGAATATTAGGATATAAATGACCGAGC 58.031 37.037 0.00 0.00 0.00 5.03
7574 7700 4.864633 ACAGCTACAGTGATATGATGTCG 58.135 43.478 0.00 0.00 0.00 4.35
7577 7703 7.600960 ACTGATACAGCTACAGTGATATGATG 58.399 38.462 12.07 0.00 42.18 3.07
7578 7704 7.773489 ACTGATACAGCTACAGTGATATGAT 57.227 36.000 12.07 0.00 42.18 2.45
7580 7706 8.654230 AAAACTGATACAGCTACAGTGATATG 57.346 34.615 13.10 0.00 42.81 1.78
7604 7730 5.986501 AAACATATGCGGGGTTCTAAAAA 57.013 34.783 1.58 0.00 0.00 1.94
7605 7731 5.244178 ACAAAACATATGCGGGGTTCTAAAA 59.756 36.000 1.58 0.00 0.00 1.52
7606 7732 4.767928 ACAAAACATATGCGGGGTTCTAAA 59.232 37.500 1.58 0.00 0.00 1.85
7609 7735 2.491693 CACAAAACATATGCGGGGTTCT 59.508 45.455 1.58 0.00 0.00 3.01
7611 7737 2.230266 GACACAAAACATATGCGGGGTT 59.770 45.455 1.58 0.00 0.00 4.11
7612 7738 1.816224 GACACAAAACATATGCGGGGT 59.184 47.619 1.58 0.00 0.00 4.95
7615 7741 1.466950 ACCGACACAAAACATATGCGG 59.533 47.619 1.58 7.56 38.30 5.69
7617 7743 4.095610 GCTAACCGACACAAAACATATGC 58.904 43.478 1.58 0.00 0.00 3.14
7618 7744 4.142988 ACGCTAACCGACACAAAACATATG 60.143 41.667 0.00 0.00 41.02 1.78
7619 7745 3.998341 ACGCTAACCGACACAAAACATAT 59.002 39.130 0.00 0.00 41.02 1.78
7627 7815 2.995258 GGAAATAACGCTAACCGACACA 59.005 45.455 0.00 0.00 41.02 3.72
7698 7886 1.396301 GTTGAATCTTCTGCTCGCAGG 59.604 52.381 17.93 4.18 43.75 4.85
7700 7888 2.071540 CAGTTGAATCTTCTGCTCGCA 58.928 47.619 0.00 0.00 0.00 5.10
7704 7903 2.613977 CGGTCCAGTTGAATCTTCTGCT 60.614 50.000 0.00 0.00 0.00 4.24
7729 7929 5.428457 TCTCATAATTAAGAGGGGCTGTTCA 59.572 40.000 15.71 0.00 32.76 3.18
7753 7954 2.717580 TGTGAGTTCTCGCACGTATT 57.282 45.000 11.33 0.00 45.01 1.89
7756 7957 1.526887 CATTTGTGAGTTCTCGCACGT 59.473 47.619 14.40 5.08 45.01 4.49
7757 7958 1.722751 GCATTTGTGAGTTCTCGCACG 60.723 52.381 14.40 8.35 45.01 5.34
7820 8059 3.903282 GGCCCGTCACCGCGTATA 61.903 66.667 4.92 0.00 0.00 1.47
7826 8065 3.430862 CAATGTGGCCCGTCACCG 61.431 66.667 0.00 0.00 36.87 4.94
7874 8113 4.092675 CACGGCATTGAGTTTTGTTTGTTT 59.907 37.500 0.00 0.00 0.00 2.83
7881 8120 2.033299 AGTGTCACGGCATTGAGTTTTG 59.967 45.455 0.00 0.00 0.00 2.44
7882 8121 2.033299 CAGTGTCACGGCATTGAGTTTT 59.967 45.455 0.00 0.00 0.00 2.43
7883 8122 1.603802 CAGTGTCACGGCATTGAGTTT 59.396 47.619 0.00 0.00 0.00 2.66
7884 8123 1.229428 CAGTGTCACGGCATTGAGTT 58.771 50.000 0.00 0.00 0.00 3.01
7886 8125 0.603707 ACCAGTGTCACGGCATTGAG 60.604 55.000 12.07 0.00 0.00 3.02
7888 8127 1.464608 CTAACCAGTGTCACGGCATTG 59.535 52.381 12.07 0.00 0.00 2.82
7889 8128 1.610624 CCTAACCAGTGTCACGGCATT 60.611 52.381 12.07 5.32 0.00 3.56
7891 8130 1.116536 TCCTAACCAGTGTCACGGCA 61.117 55.000 12.07 2.64 0.00 5.69
7895 8150 3.502211 CACCATTTCCTAACCAGTGTCAC 59.498 47.826 0.00 0.00 0.00 3.67
7900 8155 4.927267 TCATCACCATTTCCTAACCAGT 57.073 40.909 0.00 0.00 0.00 4.00
7915 8170 7.184779 CCATCATGAATATACGCAATCATCAC 58.815 38.462 0.00 0.00 30.39 3.06
7997 8302 5.511373 CGTGGCTCAATGATTATTCCTAGGA 60.511 44.000 7.62 7.62 0.00 2.94
8063 8368 0.322648 TGTGGACCACTGCTCTGATG 59.677 55.000 24.81 0.00 35.11 3.07
8065 8370 1.002430 GAATGTGGACCACTGCTCTGA 59.998 52.381 24.81 3.54 35.11 3.27
8081 8386 4.218417 ACGATGGAAGGTGAAAAAGGAATG 59.782 41.667 0.00 0.00 0.00 2.67
8088 8393 1.153353 GCGACGATGGAAGGTGAAAA 58.847 50.000 0.00 0.00 0.00 2.29
8103 8408 4.451150 TGGATGGAGTGGCGCGAC 62.451 66.667 15.38 15.38 0.00 5.19
8107 8412 2.034879 GTGTGTGGATGGAGTGGCG 61.035 63.158 0.00 0.00 0.00 5.69
8121 8432 0.606401 AGGCTCCGGAAATGTGTGTG 60.606 55.000 5.23 0.00 0.00 3.82
8132 8443 2.358737 AAGCACGAAAGGCTCCGG 60.359 61.111 12.68 0.00 41.66 5.14
8134 8445 1.337823 TGTAGAAGCACGAAAGGCTCC 60.338 52.381 0.00 0.00 41.66 4.70
8173 8484 2.288395 CCAACCAATCTGTTGTCAAGCC 60.288 50.000 3.54 0.00 43.22 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.