Multiple sequence alignment - TraesCS2A01G086700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G086700 chr2A 100.000 5285 0 0 1 5285 40344486 40339202 0.000000e+00 9760
1 TraesCS2A01G086700 chr2A 88.298 1974 191 22 1730 3683 9776821 9778774 0.000000e+00 2329
2 TraesCS2A01G086700 chr2A 86.523 1254 127 25 1705 2938 10384236 10383005 0.000000e+00 1341
3 TraesCS2A01G086700 chr2A 76.898 2450 471 68 1839 4229 10197977 10200390 0.000000e+00 1301
4 TraesCS2A01G086700 chr2A 77.195 2232 430 61 2086 4268 20502513 20504714 0.000000e+00 1229
5 TraesCS2A01G086700 chr2A 79.039 1956 286 64 2820 4732 10374442 10376316 0.000000e+00 1227
6 TraesCS2A01G086700 chr2A 89.064 887 93 2 2787 3672 9201985 9201102 0.000000e+00 1098
7 TraesCS2A01G086700 chr2A 84.451 1029 136 16 3571 4593 9201003 9199993 0.000000e+00 992
8 TraesCS2A01G086700 chr2A 82.358 1196 160 31 3683 4870 9778900 9780052 0.000000e+00 992
9 TraesCS2A01G086700 chr2A 86.718 783 86 7 2020 2794 9203462 9202690 0.000000e+00 854
10 TraesCS2A01G086700 chr2A 82.198 910 138 19 3571 4471 10382988 10382094 0.000000e+00 761
11 TraesCS2A01G086700 chr2A 77.573 379 70 10 206 574 699169650 699170023 1.150000e-51 215
12 TraesCS2A01G086700 chr2A 90.361 83 8 0 5047 5129 41230571 41230653 5.600000e-20 110
13 TraesCS2A01G086700 chr2D 94.458 4168 163 28 1140 5285 36436479 36432358 0.000000e+00 6355
14 TraesCS2A01G086700 chr2D 77.109 2442 470 63 1841 4229 19579902 19582307 0.000000e+00 1330
15 TraesCS2A01G086700 chr2D 87.359 1155 126 13 1 1140 36437691 36436542 0.000000e+00 1306
16 TraesCS2A01G086700 chr2D 78.152 2110 391 54 2209 4268 19462191 19464280 0.000000e+00 1279
17 TraesCS2A01G086700 chr2D 77.023 2237 431 58 2049 4229 10025062 10022853 0.000000e+00 1206
18 TraesCS2A01G086700 chr2D 76.298 2447 469 77 1839 4229 10096577 10098968 0.000000e+00 1203
19 TraesCS2A01G086700 chr2D 81.185 287 38 8 1694 1965 10043047 10042762 3.210000e-52 217
20 TraesCS2A01G086700 chr2D 83.099 142 11 7 4882 5018 72150944 72150811 3.340000e-22 117
21 TraesCS2A01G086700 chr2B 77.014 2445 456 76 1847 4229 31424423 31422023 0.000000e+00 1304
22 TraesCS2A01G086700 chr2B 77.018 2193 417 65 1839 3990 13495238 13493092 0.000000e+00 1177
23 TraesCS2A01G086700 chr2B 82.821 1106 157 20 2766 3861 13480862 13479780 0.000000e+00 959
24 TraesCS2A01G086700 chr2B 79.274 936 158 28 2963 3874 13735902 13736825 5.810000e-174 621
25 TraesCS2A01G086700 chr2B 90.336 238 13 5 4212 4443 59218600 59218833 2.390000e-78 303
26 TraesCS2A01G086700 chr2B 92.271 207 15 1 4588 4793 59223585 59223791 5.180000e-75 292
27 TraesCS2A01G086700 chr2B 75.967 491 78 23 3980 4465 13479739 13479284 3.210000e-52 217
28 TraesCS2A01G086700 chr2B 91.358 81 7 0 5049 5129 49494475 49494555 1.560000e-20 111
29 TraesCS2A01G086700 chr1A 91.667 420 34 1 4867 5285 253306039 253306458 9.870000e-162 580
30 TraesCS2A01G086700 chr1A 79.661 354 57 12 196 540 186209775 186209428 1.900000e-59 241
31 TraesCS2A01G086700 chr7B 89.623 424 33 6 4863 5285 25303809 25304222 3.620000e-146 529
32 TraesCS2A01G086700 chr7B 91.358 81 7 0 5049 5129 352534269 352534349 1.560000e-20 111
33 TraesCS2A01G086700 chr7A 86.792 424 34 9 4863 5285 104129362 104128960 2.240000e-123 453
34 TraesCS2A01G086700 chr7D 80.846 449 70 13 195 634 117573760 117574201 6.560000e-89 339
35 TraesCS2A01G086700 chr7D 81.481 324 54 5 195 514 595737109 595737430 1.460000e-65 261
36 TraesCS2A01G086700 chr4A 81.790 324 49 8 196 513 557199146 557199465 4.060000e-66 263
37 TraesCS2A01G086700 chr3B 82.392 301 47 2 206 500 113536106 113536406 1.890000e-64 257
38 TraesCS2A01G086700 chr3B 74.963 671 110 43 203 833 492223678 492223026 6.790000e-64 255
39 TraesCS2A01G086700 chr5D 81.613 310 47 6 198 499 273482256 273482563 1.140000e-61 248
40 TraesCS2A01G086700 chr1B 84.804 204 22 5 1 196 250432438 250432236 4.180000e-46 196
41 TraesCS2A01G086700 chr6B 92.593 81 6 0 5049 5129 666785252 666785332 3.340000e-22 117
42 TraesCS2A01G086700 chrUn 77.778 162 36 0 2455 2616 2092474 2092313 3.370000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G086700 chr2A 40339202 40344486 5284 True 9760.000000 9760 100.000000 1 5285 1 chr2A.!!$R1 5284
1 TraesCS2A01G086700 chr2A 9776821 9780052 3231 False 1660.500000 2329 85.328000 1730 4870 2 chr2A.!!$F6 3140
2 TraesCS2A01G086700 chr2A 10197977 10200390 2413 False 1301.000000 1301 76.898000 1839 4229 1 chr2A.!!$F1 2390
3 TraesCS2A01G086700 chr2A 20502513 20504714 2201 False 1229.000000 1229 77.195000 2086 4268 1 chr2A.!!$F3 2182
4 TraesCS2A01G086700 chr2A 10374442 10376316 1874 False 1227.000000 1227 79.039000 2820 4732 1 chr2A.!!$F2 1912
5 TraesCS2A01G086700 chr2A 10382094 10384236 2142 True 1051.000000 1341 84.360500 1705 4471 2 chr2A.!!$R3 2766
6 TraesCS2A01G086700 chr2A 9199993 9203462 3469 True 981.333333 1098 86.744333 2020 4593 3 chr2A.!!$R2 2573
7 TraesCS2A01G086700 chr2D 36432358 36437691 5333 True 3830.500000 6355 90.908500 1 5285 2 chr2D.!!$R4 5284
8 TraesCS2A01G086700 chr2D 19579902 19582307 2405 False 1330.000000 1330 77.109000 1841 4229 1 chr2D.!!$F3 2388
9 TraesCS2A01G086700 chr2D 19462191 19464280 2089 False 1279.000000 1279 78.152000 2209 4268 1 chr2D.!!$F2 2059
10 TraesCS2A01G086700 chr2D 10022853 10025062 2209 True 1206.000000 1206 77.023000 2049 4229 1 chr2D.!!$R1 2180
11 TraesCS2A01G086700 chr2D 10096577 10098968 2391 False 1203.000000 1203 76.298000 1839 4229 1 chr2D.!!$F1 2390
12 TraesCS2A01G086700 chr2B 31422023 31424423 2400 True 1304.000000 1304 77.014000 1847 4229 1 chr2B.!!$R2 2382
13 TraesCS2A01G086700 chr2B 13493092 13495238 2146 True 1177.000000 1177 77.018000 1839 3990 1 chr2B.!!$R1 2151
14 TraesCS2A01G086700 chr2B 13735902 13736825 923 False 621.000000 621 79.274000 2963 3874 1 chr2B.!!$F1 911
15 TraesCS2A01G086700 chr2B 13479284 13480862 1578 True 588.000000 959 79.394000 2766 4465 2 chr2B.!!$R3 1699
16 TraesCS2A01G086700 chr3B 492223026 492223678 652 True 255.000000 255 74.963000 203 833 1 chr3B.!!$R1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 532 0.389948 CCCCTTCCGACAGAGTTTCG 60.390 60.0 0.00 0.00 36.2 3.46 F
1165 1260 0.250038 CATATGGCCAGGTCTGACCG 60.250 60.0 20.49 14.88 44.9 4.79 F
2127 2295 0.107703 CGCCACTTTGCCATCTCCTA 60.108 55.0 0.00 0.00 0.0 2.94 F
3093 4000 0.460987 CCATTGCCACCTCTCTCGTC 60.461 60.0 0.00 0.00 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1583 0.108424 GAGAGGCGCTTGACTGATGT 60.108 55.0 7.64 0.0 0.00 3.06 R
2253 2435 0.620556 ACGCCCAGTCATTCCAGAAT 59.379 50.0 0.00 0.0 0.00 2.40 R
3874 5134 0.384230 CCAGCAACGTGTTTACTGCG 60.384 55.0 2.26 0.0 0.00 5.18 R
4612 5946 0.465460 TCACAGAACACCAACTGGGC 60.465 55.0 0.00 0.0 42.05 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.603989 TGCTTCAAATGGCTTGATTTCA 57.396 36.364 0.00 0.00 43.64 2.69
54 55 8.133024 TCATGTATTATTGCTTGGTTTCCTTT 57.867 30.769 0.00 0.00 0.00 3.11
64 65 7.156876 TGCTTGGTTTCCTTTCATAATGTAG 57.843 36.000 0.00 0.00 0.00 2.74
105 115 6.846988 AGAGTTTTCTTCTTTCTGGAAGGAT 58.153 36.000 0.00 0.00 41.94 3.24
109 119 8.221251 AGTTTTCTTCTTTCTGGAAGGATTAGT 58.779 33.333 0.00 0.00 41.94 2.24
160 170 3.840468 ACGGTGAAAACCAAGTCAAAAC 58.160 40.909 0.00 0.00 0.00 2.43
193 203 7.396540 AAAAGTGATAAATTCTCGAGCCATT 57.603 32.000 7.81 5.71 0.00 3.16
194 204 8.506168 AAAAGTGATAAATTCTCGAGCCATTA 57.494 30.769 7.81 6.81 0.00 1.90
212 222 7.601856 AGCCATTAGAAAGAGAGAATAGATCG 58.398 38.462 0.00 0.00 0.00 3.69
311 323 7.013083 GCTCAAAGTGACAATTCATCATATCCT 59.987 37.037 0.00 0.00 33.11 3.24
336 348 6.478512 ACAAACACACCAGGAAATTACATT 57.521 33.333 0.00 0.00 0.00 2.71
340 352 7.448748 AACACACCAGGAAATTACATTAGAC 57.551 36.000 0.00 0.00 0.00 2.59
347 359 6.936900 CCAGGAAATTACATTAGACGGATCAT 59.063 38.462 0.00 0.00 0.00 2.45
402 418 7.824289 TGTATTGAGAAACAAGGGAGAACTATG 59.176 37.037 0.00 0.00 42.02 2.23
405 421 7.311092 TGAGAAACAAGGGAGAACTATGTAA 57.689 36.000 0.00 0.00 0.00 2.41
442 458 6.849151 ACCCATAGTCCAAAGAAAACTAGTT 58.151 36.000 1.12 1.12 0.00 2.24
443 459 6.715264 ACCCATAGTCCAAAGAAAACTAGTTG 59.285 38.462 9.34 0.00 0.00 3.16
446 462 4.448210 AGTCCAAAGAAAACTAGTTGCGA 58.552 39.130 9.34 0.00 0.00 5.10
460 476 2.292569 AGTTGCGAATGATCATGATGGC 59.707 45.455 14.30 8.15 0.00 4.40
464 480 2.295349 GCGAATGATCATGATGGCCTTT 59.705 45.455 14.30 3.44 0.00 3.11
474 490 4.646040 TCATGATGGCCTTTAAGTTGATGG 59.354 41.667 3.32 0.00 0.00 3.51
486 502 2.269023 AGTTGATGGAGATGGTCACCA 58.731 47.619 0.00 0.00 41.25 4.17
506 522 1.663911 TGAAGAATTCCCCCTTCCGA 58.336 50.000 0.65 0.00 46.93 4.55
509 525 0.912486 AGAATTCCCCCTTCCGACAG 59.088 55.000 0.65 0.00 0.00 3.51
516 532 0.389948 CCCCTTCCGACAGAGTTTCG 60.390 60.000 0.00 0.00 36.20 3.46
525 542 2.543238 CGACAGAGTTTCGGTATAGGCC 60.543 54.545 0.00 0.00 32.66 5.19
526 543 2.694109 GACAGAGTTTCGGTATAGGCCT 59.306 50.000 11.78 11.78 0.00 5.19
529 546 4.713321 ACAGAGTTTCGGTATAGGCCTTTA 59.287 41.667 12.58 4.14 0.00 1.85
530 547 5.163437 ACAGAGTTTCGGTATAGGCCTTTAG 60.163 44.000 12.58 0.00 0.00 1.85
550 567 6.968131 TTAGATTGGATCACGAAGAAACAG 57.032 37.500 0.00 0.00 0.00 3.16
552 569 5.174395 AGATTGGATCACGAAGAAACAGAG 58.826 41.667 0.00 0.00 0.00 3.35
559 576 0.868406 CGAAGAAACAGAGGGTGTGC 59.132 55.000 0.00 0.00 40.26 4.57
561 578 0.535102 AAGAAACAGAGGGTGTGCGG 60.535 55.000 0.00 0.00 40.26 5.69
562 579 2.594592 AAACAGAGGGTGTGCGGC 60.595 61.111 0.00 0.00 40.26 6.53
582 599 1.168714 GGCAGAAAGTTTCAGGCGAT 58.831 50.000 16.84 0.00 34.37 4.58
588 605 5.863935 GCAGAAAGTTTCAGGCGATAAAATT 59.136 36.000 17.65 0.00 0.00 1.82
593 610 6.428385 AGTTTCAGGCGATAAAATTCTGAG 57.572 37.500 0.00 0.00 36.11 3.35
594 611 6.173339 AGTTTCAGGCGATAAAATTCTGAGA 58.827 36.000 0.00 0.00 36.11 3.27
618 635 8.718656 AGAGTTTTCAGAGGTATATAAAGGCAT 58.281 33.333 0.00 0.00 0.00 4.40
664 694 3.334054 GAAGGCCACCCCTCTGCT 61.334 66.667 5.01 0.00 45.62 4.24
694 724 4.974721 GTGTGGGGCCCCTGTGTG 62.975 72.222 40.66 0.00 36.94 3.82
703 733 4.351054 CCCTGTGTGCCCCCTGAC 62.351 72.222 0.00 0.00 0.00 3.51
704 734 4.351054 CCTGTGTGCCCCCTGACC 62.351 72.222 0.00 0.00 0.00 4.02
705 735 3.252284 CTGTGTGCCCCCTGACCT 61.252 66.667 0.00 0.00 0.00 3.85
706 736 1.918293 CTGTGTGCCCCCTGACCTA 60.918 63.158 0.00 0.00 0.00 3.08
707 737 1.229820 TGTGTGCCCCCTGACCTAT 60.230 57.895 0.00 0.00 0.00 2.57
708 738 1.224592 GTGTGCCCCCTGACCTATG 59.775 63.158 0.00 0.00 0.00 2.23
709 739 1.229820 TGTGCCCCCTGACCTATGT 60.230 57.895 0.00 0.00 0.00 2.29
710 740 0.844661 TGTGCCCCCTGACCTATGTT 60.845 55.000 0.00 0.00 0.00 2.71
711 741 0.394352 GTGCCCCCTGACCTATGTTG 60.394 60.000 0.00 0.00 0.00 3.33
722 752 1.164411 CCTATGTTGTTTGCTGCCGA 58.836 50.000 0.00 0.00 0.00 5.54
726 756 0.463654 TGTTGTTTGCTGCCGAGTCT 60.464 50.000 0.00 0.00 0.00 3.24
826 857 8.406172 TCAAAAACAGCAGAAAACAATAACTC 57.594 30.769 0.00 0.00 0.00 3.01
833 864 5.590259 AGCAGAAAACAATAACTCACACTGT 59.410 36.000 0.00 0.00 0.00 3.55
851 882 5.889853 ACACTGTATTAATAGGTCAGTCCGA 59.110 40.000 12.11 0.00 41.99 4.55
945 976 9.401058 TCATAGATATGAGACGTATCACATGAT 57.599 33.333 16.22 6.72 36.86 2.45
970 1001 1.281656 CCGACCCGTGTTGCTTTTC 59.718 57.895 0.00 0.00 0.00 2.29
984 1015 2.878406 TGCTTTTCAGCCTTGTGAGTAC 59.122 45.455 0.00 0.00 46.74 2.73
997 1028 8.515414 AGCCTTGTGAGTACAAATTAAGATTTC 58.485 33.333 0.00 0.00 45.53 2.17
1075 1106 6.391227 AATATATCAAAACTCAAAGGGCCG 57.609 37.500 0.00 0.00 0.00 6.13
1122 1154 2.859165 TTCAAGATCGCCCTTGTTCT 57.141 45.000 13.64 0.00 42.95 3.01
1123 1155 2.099141 TCAAGATCGCCCTTGTTCTG 57.901 50.000 13.64 0.00 42.95 3.02
1144 1239 4.760047 CGGGCTGAAGACCACGGG 62.760 72.222 2.45 0.00 46.09 5.28
1165 1260 0.250038 CATATGGCCAGGTCTGACCG 60.250 60.000 20.49 14.88 44.90 4.79
1173 1268 3.755628 GGTCTGACCGCGTGGCTA 61.756 66.667 16.69 2.91 39.70 3.93
1174 1269 2.494918 GTCTGACCGCGTGGCTAT 59.505 61.111 16.69 0.00 39.70 2.97
1175 1270 1.589196 GTCTGACCGCGTGGCTATC 60.589 63.158 16.69 5.99 39.70 2.08
1176 1271 1.753078 TCTGACCGCGTGGCTATCT 60.753 57.895 16.69 0.00 39.70 1.98
1177 1272 1.141881 CTGACCGCGTGGCTATCTT 59.858 57.895 16.69 0.00 39.70 2.40
1178 1273 0.460284 CTGACCGCGTGGCTATCTTT 60.460 55.000 16.69 0.00 39.70 2.52
1179 1274 0.739462 TGACCGCGTGGCTATCTTTG 60.739 55.000 16.69 0.00 39.70 2.77
1180 1275 2.036764 GACCGCGTGGCTATCTTTGC 62.037 60.000 16.69 0.00 39.70 3.68
1263 1361 3.852858 AGGAAATTCCCCAAATCTGGT 57.147 42.857 8.66 0.00 41.72 4.00
1269 1367 0.926293 TCCCCAAATCTGGTCATCCC 59.074 55.000 0.00 0.00 41.72 3.85
1270 1368 0.630673 CCCCAAATCTGGTCATCCCA 59.369 55.000 0.00 0.00 41.72 4.37
1271 1369 1.006998 CCCCAAATCTGGTCATCCCAA 59.993 52.381 0.00 0.00 44.65 4.12
1272 1370 2.559478 CCCCAAATCTGGTCATCCCAAA 60.559 50.000 0.00 0.00 44.65 3.28
1273 1371 3.172339 CCCAAATCTGGTCATCCCAAAA 58.828 45.455 0.00 0.00 44.65 2.44
1274 1372 3.776417 CCCAAATCTGGTCATCCCAAAAT 59.224 43.478 0.00 0.00 44.65 1.82
1275 1373 4.141869 CCCAAATCTGGTCATCCCAAAATC 60.142 45.833 0.00 0.00 44.65 2.17
1287 1385 1.532505 CCCAAAATCAATCGCGCTCTG 60.533 52.381 5.56 0.00 0.00 3.35
1352 1450 3.525545 GCCTCCTCCCGTCCGTAC 61.526 72.222 0.00 0.00 0.00 3.67
1400 1498 3.272334 CGCGCCATGTAGCTTCCC 61.272 66.667 0.00 0.00 0.00 3.97
1402 1500 2.588877 CGCCATGTAGCTTCCCCG 60.589 66.667 0.00 0.00 0.00 5.73
1484 1583 3.506096 CTAGACCGACCGCGAGCA 61.506 66.667 8.23 0.00 40.82 4.26
1503 1602 0.108424 ACATCAGTCAAGCGCCTCTC 60.108 55.000 2.29 0.00 0.00 3.20
1507 1606 2.507324 GTCAAGCGCCTCTCGGAC 60.507 66.667 2.29 0.00 38.94 4.79
1592 1691 6.307155 CGTGTTTCCTTATCAACATCTGAAC 58.693 40.000 0.00 0.00 37.67 3.18
1697 1799 2.963782 ACATGGTCCGGGAATAGAGTAC 59.036 50.000 0.00 0.00 0.00 2.73
1722 1824 0.179205 GTCGACTGAATGCAGCTTGC 60.179 55.000 8.70 1.70 46.26 4.01
1739 1845 2.393768 GCACACTGCCATGGTCTCG 61.394 63.158 14.67 2.67 37.42 4.04
1752 1858 5.473931 CCATGGTCTCGAGTCAATTATAGG 58.526 45.833 13.13 0.00 0.00 2.57
1762 1868 6.018425 TCGAGTCAATTATAGGACTGTACGAC 60.018 42.308 8.09 0.00 44.03 4.34
1799 1907 1.198637 GCAGGCACATGTTTGAGACTC 59.801 52.381 0.00 0.00 28.02 3.36
2044 2211 3.257873 ACTCAGTTGATCTGGACTCACTG 59.742 47.826 0.00 0.00 43.76 3.66
2069 2236 4.881019 AGCAGTGTCATACTCTTCAGTT 57.119 40.909 0.00 0.00 37.60 3.16
2079 2247 5.540337 TCATACTCTTCAGTTCAGGTGTTCT 59.460 40.000 0.00 0.00 33.62 3.01
2125 2293 2.409870 CCGCCACTTTGCCATCTCC 61.410 63.158 0.00 0.00 0.00 3.71
2126 2294 1.377725 CGCCACTTTGCCATCTCCT 60.378 57.895 0.00 0.00 0.00 3.69
2127 2295 0.107703 CGCCACTTTGCCATCTCCTA 60.108 55.000 0.00 0.00 0.00 2.94
2128 2296 1.673168 GCCACTTTGCCATCTCCTAG 58.327 55.000 0.00 0.00 0.00 3.02
2129 2297 1.673168 CCACTTTGCCATCTCCTAGC 58.327 55.000 0.00 0.00 0.00 3.42
2170 2343 1.700600 GGCTGCGCTCTTAGCTTGTC 61.701 60.000 15.94 0.00 39.60 3.18
2447 2629 1.004320 TCCTCTTAAGCGGCGCAAA 60.004 52.632 35.02 24.88 0.00 3.68
2622 2807 5.069914 TGTCCTATACAAGCATATTGTCGGT 59.930 40.000 0.00 0.00 34.29 4.69
2756 2941 0.744414 CTCAAGGTACGGGCACATGG 60.744 60.000 0.00 0.00 0.00 3.66
3093 4000 0.460987 CCATTGCCACCTCTCTCGTC 60.461 60.000 0.00 0.00 0.00 4.20
3274 4181 0.957395 CCGGCATTCTGCTCTGTGTT 60.957 55.000 0.00 0.00 44.28 3.32
3461 4368 2.751259 GCAATCTGTCCAAGATGCTGAA 59.249 45.455 0.00 0.00 45.37 3.02
3527 4437 3.071747 GTCCCTGAGAAGGTCAAGAAGTT 59.928 47.826 0.00 0.00 33.60 2.66
3633 4564 1.004745 CACTACCCTGGGCTGTTGATT 59.995 52.381 14.08 0.00 0.00 2.57
3800 5060 0.833287 ATGATGTTCCTCCTCGTGGG 59.167 55.000 3.23 0.00 0.00 4.61
3874 5134 4.808364 CCTGCAAACAGCTAGAGAAGATAC 59.192 45.833 0.00 0.00 45.94 2.24
3901 5164 0.249911 ACACGTTGCTGGTTCTCCTC 60.250 55.000 0.00 0.00 34.23 3.71
3906 5169 0.179032 TTGCTGGTTCTCCTCGCAAA 60.179 50.000 10.28 0.00 42.70 3.68
3914 5177 0.885879 TCTCCTCGCAAAAGCGTCTA 59.114 50.000 9.80 0.00 34.52 2.59
4330 5656 5.758296 CCTCACTTTCTGTACTTTGTAAGCA 59.242 40.000 0.00 0.00 0.00 3.91
4331 5657 6.428159 CCTCACTTTCTGTACTTTGTAAGCAT 59.572 38.462 0.00 0.00 0.00 3.79
4332 5658 7.602644 CCTCACTTTCTGTACTTTGTAAGCATA 59.397 37.037 0.00 0.00 0.00 3.14
4352 5683 9.842775 AAGCATAATATCATTCTTCAGTTCAGA 57.157 29.630 0.00 0.00 0.00 3.27
4376 5707 2.391879 CTTTGTTCTTGCTCAGCTTGC 58.608 47.619 0.00 1.77 0.00 4.01
4381 5712 0.819259 TCTTGCTCAGCTTGCGGTTT 60.819 50.000 0.00 0.00 0.00 3.27
4382 5713 0.386478 CTTGCTCAGCTTGCGGTTTC 60.386 55.000 0.00 0.00 0.00 2.78
4383 5714 1.795170 TTGCTCAGCTTGCGGTTTCC 61.795 55.000 0.00 0.00 0.00 3.13
4478 5811 3.433306 AATTGTGCTGTACAGGGCTTA 57.567 42.857 23.95 2.84 41.10 3.09
4484 5817 1.607251 GCTGTACAGGGCTTACGTTGT 60.607 52.381 23.95 0.00 0.00 3.32
4498 5831 5.006649 GCTTACGTTGTAATGATGATCTGCA 59.993 40.000 0.00 0.00 0.00 4.41
4535 5869 5.473039 ACAAGTTCAAAAATAGATGCAGGC 58.527 37.500 0.00 0.00 0.00 4.85
4583 5917 5.484173 CAGTATTTGCATATCGGTTGTGT 57.516 39.130 0.00 0.00 0.00 3.72
4585 5919 4.941263 AGTATTTGCATATCGGTTGTGTGT 59.059 37.500 0.00 0.00 0.00 3.72
4612 5946 1.206072 GCAGCAGCAGAAAGTCACG 59.794 57.895 0.00 0.00 41.58 4.35
4636 5974 4.196193 CCAGTTGGTGTTCTGTGAAGTAA 58.804 43.478 0.00 0.00 0.00 2.24
4711 6060 0.905357 AGGAGTTCAGCGCTGGTATT 59.095 50.000 35.36 20.74 0.00 1.89
4758 6107 1.770110 TGGTCCTGGACTGGCAAGT 60.770 57.895 25.01 0.00 40.21 3.16
4857 6206 3.382546 GCAATGAGCACCCACATAATCTT 59.617 43.478 0.00 0.00 44.79 2.40
4878 6227 4.487714 TTCACACCATCTATTCCACTCC 57.512 45.455 0.00 0.00 0.00 3.85
4885 6234 3.007940 CCATCTATTCCACTCCGGCATAA 59.992 47.826 0.00 0.00 33.14 1.90
4950 6299 1.495951 CTTGCGAGCCGTGGTAAAC 59.504 57.895 0.00 0.00 0.00 2.01
5021 6370 2.030185 AGTGCCGACAGTAGTACTTGTG 60.030 50.000 0.00 1.29 0.00 3.33
5103 6452 6.936335 TGATTCAGTCACTGCTTATTTCTTCA 59.064 34.615 0.00 0.00 0.00 3.02
5105 6454 5.858381 TCAGTCACTGCTTATTTCTTCAGT 58.142 37.500 0.00 0.00 40.08 3.41
5106 6455 6.993079 TCAGTCACTGCTTATTTCTTCAGTA 58.007 36.000 0.00 0.00 37.66 2.74
5107 6456 7.093354 TCAGTCACTGCTTATTTCTTCAGTAG 58.907 38.462 0.00 0.00 37.66 2.57
5108 6457 5.872070 AGTCACTGCTTATTTCTTCAGTAGC 59.128 40.000 0.00 0.00 37.66 3.58
5109 6458 5.872070 GTCACTGCTTATTTCTTCAGTAGCT 59.128 40.000 0.00 0.00 37.66 3.32
5110 6459 7.036220 GTCACTGCTTATTTCTTCAGTAGCTA 58.964 38.462 0.00 0.00 37.66 3.32
5214 6563 5.924356 TCAGAGGTCTAGAGTGTAGATCAG 58.076 45.833 10.03 0.44 0.00 2.90
5257 6606 7.491682 AGTTGAGCAGTACACAAATCAAAATT 58.508 30.769 0.00 0.00 30.25 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.405116 TCAAGCCATTTGAAGCAACTTT 57.595 36.364 0.00 0.00 42.69 2.66
31 32 8.133024 TGAAAGGAAACCAAGCAATAATACAT 57.867 30.769 0.00 0.00 0.00 2.29
54 55 7.531857 TTTTTGGCAGGAAACTACATTATGA 57.468 32.000 0.00 0.00 40.21 2.15
81 91 6.253946 TCCTTCCAGAAAGAAGAAAACTCT 57.746 37.500 2.91 0.00 45.08 3.24
96 106 9.892130 AGTTATTTCTAACACTAATCCTTCCAG 57.108 33.333 0.00 0.00 39.81 3.86
142 152 5.105917 TGGAGAGTTTTGACTTGGTTTTCAC 60.106 40.000 0.00 0.00 0.00 3.18
160 170 7.959651 CGAGAATTTATCACTTTTTGTGGAGAG 59.040 37.037 0.00 0.00 46.20 3.20
181 191 4.950475 TCTCTCTTTCTAATGGCTCGAGAA 59.050 41.667 18.75 3.24 0.00 2.87
193 203 6.653320 GCTCTCCGATCTATTCTCTCTTTCTA 59.347 42.308 0.00 0.00 0.00 2.10
194 204 5.473504 GCTCTCCGATCTATTCTCTCTTTCT 59.526 44.000 0.00 0.00 0.00 2.52
275 285 8.947055 AATTGTCACTTTGAGCAGTTTTATTT 57.053 26.923 0.00 0.00 0.00 1.40
288 298 9.941664 GTTAGGATATGATGAATTGTCACTTTG 57.058 33.333 0.00 0.00 36.31 2.77
311 323 7.589958 ATGTAATTTCCTGGTGTGTTTGTTA 57.410 32.000 0.00 0.00 0.00 2.41
336 348 5.127194 GCCCTACATGATTATGATCCGTCTA 59.873 44.000 4.20 0.00 37.73 2.59
340 352 4.186926 CTGCCCTACATGATTATGATCCG 58.813 47.826 4.20 0.00 37.73 4.18
347 359 3.392285 ACATGAGCTGCCCTACATGATTA 59.608 43.478 22.94 0.00 41.45 1.75
402 418 4.957684 ATGGGTCCATAGCAGTAGTTAC 57.042 45.455 0.00 0.00 34.49 2.50
433 449 6.741992 TCATGATCATTCGCAACTAGTTTT 57.258 33.333 5.16 0.00 0.00 2.43
442 458 1.202842 AGGCCATCATGATCATTCGCA 60.203 47.619 5.16 0.00 0.00 5.10
443 459 1.531423 AGGCCATCATGATCATTCGC 58.469 50.000 5.16 5.08 0.00 4.70
446 462 6.608405 TCAACTTAAAGGCCATCATGATCATT 59.392 34.615 5.16 0.00 0.00 2.57
460 476 5.355350 GTGACCATCTCCATCAACTTAAAGG 59.645 44.000 0.00 0.00 0.00 3.11
464 480 3.843619 TGGTGACCATCTCCATCAACTTA 59.156 43.478 0.00 0.00 35.34 2.24
474 490 4.578105 GGAATTCTTCATGGTGACCATCTC 59.422 45.833 15.48 3.03 43.15 2.75
486 502 2.092375 GTCGGAAGGGGGAATTCTTCAT 60.092 50.000 5.23 0.00 40.65 2.57
506 522 2.748388 AGGCCTATACCGAAACTCTGT 58.252 47.619 1.29 0.00 33.69 3.41
509 525 5.526506 TCTAAAGGCCTATACCGAAACTC 57.473 43.478 5.16 0.00 33.69 3.01
516 532 6.174049 GTGATCCAATCTAAAGGCCTATACC 58.826 44.000 5.16 0.00 0.00 2.73
518 534 5.778241 TCGTGATCCAATCTAAAGGCCTATA 59.222 40.000 5.16 0.00 0.00 1.31
520 536 3.964688 TCGTGATCCAATCTAAAGGCCTA 59.035 43.478 5.16 0.00 0.00 3.93
525 542 7.331934 TCTGTTTCTTCGTGATCCAATCTAAAG 59.668 37.037 0.00 0.00 0.00 1.85
526 543 7.158697 TCTGTTTCTTCGTGATCCAATCTAAA 58.841 34.615 0.00 0.00 0.00 1.85
529 546 5.152623 TCTGTTTCTTCGTGATCCAATCT 57.847 39.130 0.00 0.00 0.00 2.40
530 547 4.331168 CCTCTGTTTCTTCGTGATCCAATC 59.669 45.833 0.00 0.00 0.00 2.67
559 576 1.207593 CTGAAACTTTCTGCCGCCG 59.792 57.895 3.22 0.00 0.00 6.46
561 578 1.081175 GCCTGAAACTTTCTGCCGC 60.081 57.895 3.22 0.00 0.00 6.53
562 579 1.207593 CGCCTGAAACTTTCTGCCG 59.792 57.895 3.22 0.82 0.00 5.69
565 582 7.272084 CAGAATTTTATCGCCTGAAACTTTCTG 59.728 37.037 3.22 2.68 33.39 3.02
571 588 6.092807 ACTCTCAGAATTTTATCGCCTGAAAC 59.907 38.462 0.00 0.00 34.01 2.78
593 610 8.778358 CATGCCTTTATATACCTCTGAAAACTC 58.222 37.037 0.00 0.00 0.00 3.01
594 611 7.721399 CCATGCCTTTATATACCTCTGAAAACT 59.279 37.037 0.00 0.00 0.00 2.66
605 622 4.650972 TGGTCCCCATGCCTTTATATAC 57.349 45.455 0.00 0.00 0.00 1.47
618 635 1.139498 TGATTGCCTCTTGGTCCCCA 61.139 55.000 0.00 0.00 35.27 4.96
626 643 2.355920 CCTGAAGCTCTGATTGCCTCTT 60.356 50.000 0.00 0.00 0.00 2.85
677 707 4.974721 CACACAGGGGCCCCACAC 62.975 72.222 42.48 16.40 38.92 3.82
687 717 4.351054 GGTCAGGGGGCACACAGG 62.351 72.222 0.00 0.00 0.00 4.00
688 718 1.274703 ATAGGTCAGGGGGCACACAG 61.275 60.000 0.00 0.00 0.00 3.66
689 719 1.229820 ATAGGTCAGGGGGCACACA 60.230 57.895 0.00 0.00 0.00 3.72
690 720 1.224592 CATAGGTCAGGGGGCACAC 59.775 63.158 0.00 0.00 0.00 3.82
691 721 0.844661 AACATAGGTCAGGGGGCACA 60.845 55.000 0.00 0.00 0.00 4.57
692 722 0.394352 CAACATAGGTCAGGGGGCAC 60.394 60.000 0.00 0.00 0.00 5.01
694 724 0.331616 AACAACATAGGTCAGGGGGC 59.668 55.000 0.00 0.00 0.00 5.80
695 725 2.446435 CAAACAACATAGGTCAGGGGG 58.554 52.381 0.00 0.00 0.00 5.40
696 726 1.818674 GCAAACAACATAGGTCAGGGG 59.181 52.381 0.00 0.00 0.00 4.79
698 728 2.095059 GCAGCAAACAACATAGGTCAGG 60.095 50.000 0.00 0.00 0.00 3.86
699 729 2.095059 GGCAGCAAACAACATAGGTCAG 60.095 50.000 0.00 0.00 0.00 3.51
700 730 1.885887 GGCAGCAAACAACATAGGTCA 59.114 47.619 0.00 0.00 0.00 4.02
701 731 1.135689 CGGCAGCAAACAACATAGGTC 60.136 52.381 0.00 0.00 0.00 3.85
702 732 0.881118 CGGCAGCAAACAACATAGGT 59.119 50.000 0.00 0.00 0.00 3.08
703 733 1.131126 CTCGGCAGCAAACAACATAGG 59.869 52.381 0.00 0.00 0.00 2.57
704 734 1.806542 ACTCGGCAGCAAACAACATAG 59.193 47.619 0.00 0.00 0.00 2.23
705 735 1.804151 GACTCGGCAGCAAACAACATA 59.196 47.619 0.00 0.00 0.00 2.29
706 736 0.593128 GACTCGGCAGCAAACAACAT 59.407 50.000 0.00 0.00 0.00 2.71
707 737 0.463654 AGACTCGGCAGCAAACAACA 60.464 50.000 0.00 0.00 0.00 3.33
708 738 0.663153 AAGACTCGGCAGCAAACAAC 59.337 50.000 0.00 0.00 0.00 3.32
709 739 1.388547 AAAGACTCGGCAGCAAACAA 58.611 45.000 0.00 0.00 0.00 2.83
710 740 1.388547 AAAAGACTCGGCAGCAAACA 58.611 45.000 0.00 0.00 0.00 2.83
711 741 2.492019 AAAAAGACTCGGCAGCAAAC 57.508 45.000 0.00 0.00 0.00 2.93
722 752 9.503399 AACGGAAGATTTACATCTAAAAAGACT 57.497 29.630 0.00 0.00 39.00 3.24
808 839 5.911280 CAGTGTGAGTTATTGTTTTCTGCTG 59.089 40.000 0.00 0.00 0.00 4.41
826 857 5.977725 CGGACTGACCTATTAATACAGTGTG 59.022 44.000 17.39 8.94 41.01 3.82
922 953 9.014297 ACAATCATGTGATACGTCTCATATCTA 57.986 33.333 9.72 3.33 38.69 1.98
970 1001 6.801539 TCTTAATTTGTACTCACAAGGCTG 57.198 37.500 0.00 0.00 45.17 4.85
1059 1090 0.597377 GCACGGCCCTTTGAGTTTTG 60.597 55.000 0.00 0.00 0.00 2.44
1102 1133 3.012518 CAGAACAAGGGCGATCTTGAAT 58.987 45.455 20.05 11.06 44.98 2.57
1122 1154 4.373116 GGTCTTCAGCCCGTCGCA 62.373 66.667 0.00 0.00 41.38 5.10
1123 1155 4.373116 TGGTCTTCAGCCCGTCGC 62.373 66.667 0.00 0.00 37.98 5.19
1159 1254 0.460284 AAAGATAGCCACGCGGTCAG 60.460 55.000 12.47 0.00 33.28 3.51
1263 1361 1.065401 GCGCGATTGATTTTGGGATGA 59.935 47.619 12.10 0.00 0.00 2.92
1269 1367 1.186030 GCAGAGCGCGATTGATTTTG 58.814 50.000 12.10 0.00 0.00 2.44
1270 1368 3.611433 GCAGAGCGCGATTGATTTT 57.389 47.368 12.10 0.00 0.00 1.82
1287 1385 4.166888 TCTCCGCCATGGCTGAGC 62.167 66.667 39.06 15.64 47.00 4.26
1352 1450 4.208686 GAGGCGGCTGGTCGTAGG 62.209 72.222 19.63 0.00 0.00 3.18
1418 1517 2.435059 GGCGACCAGAAGCTCCAC 60.435 66.667 0.00 0.00 0.00 4.02
1456 1555 4.649310 GGTCTAGCTAGGCGCCGC 62.649 72.222 23.20 20.04 40.39 6.53
1484 1583 0.108424 GAGAGGCGCTTGACTGATGT 60.108 55.000 7.64 0.00 0.00 3.06
1592 1691 3.919223 TTTTCGACGGGTTAAAATGGG 57.081 42.857 0.00 0.00 0.00 4.00
1649 1748 3.035576 GCCGGCTGCCGTCTAAAAC 62.036 63.158 35.82 14.52 46.80 2.43
1684 1786 3.488721 CGACCAACAGTACTCTATTCCCG 60.489 52.174 0.00 0.00 0.00 5.14
1687 1789 5.123502 TCAGTCGACCAACAGTACTCTATTC 59.876 44.000 13.01 0.00 0.00 1.75
1697 1799 1.462283 CTGCATTCAGTCGACCAACAG 59.538 52.381 13.01 7.96 35.61 3.16
1722 1824 0.738762 CTCGAGACCATGGCAGTGTG 60.739 60.000 13.04 0.00 0.00 3.82
1739 1845 7.024340 TGTCGTACAGTCCTATAATTGACTC 57.976 40.000 0.00 0.00 39.76 3.36
1762 1868 0.250424 TGCATCTGGACACCACACTG 60.250 55.000 0.00 0.00 0.00 3.66
1877 1995 8.295288 AGAAGCAAGAAATTAAGAACACTGATG 58.705 33.333 0.00 0.00 0.00 3.07
2010 2169 5.591067 AGATCAACTGAGTAGTGGTACTAGC 59.409 44.000 0.00 0.00 39.78 3.42
2044 2211 2.393271 AGAGTATGACACTGCTTGCC 57.607 50.000 0.00 0.00 37.72 4.52
2069 2236 3.576118 CTCTGAAGGAAGAGAACACCTGA 59.424 47.826 0.00 0.00 45.59 3.86
2079 2247 3.309296 ACCTCACAACTCTGAAGGAAGA 58.691 45.455 0.00 0.00 34.82 2.87
2125 2293 5.651387 TTGCATATAGTGAGCTAGGCTAG 57.349 43.478 17.33 17.33 39.88 3.42
2126 2294 6.611613 AATTGCATATAGTGAGCTAGGCTA 57.388 37.500 0.00 0.00 39.88 3.93
2127 2295 5.495926 AATTGCATATAGTGAGCTAGGCT 57.504 39.130 0.00 0.00 43.88 4.58
2128 2296 5.814705 CCTAATTGCATATAGTGAGCTAGGC 59.185 44.000 0.00 0.00 0.00 3.93
2129 2297 5.814705 GCCTAATTGCATATAGTGAGCTAGG 59.185 44.000 0.00 0.00 0.00 3.02
2253 2435 0.620556 ACGCCCAGTCATTCCAGAAT 59.379 50.000 0.00 0.00 0.00 2.40
2447 2629 2.817844 GCGATTAGGTGGTGGTCTTTTT 59.182 45.455 0.00 0.00 0.00 1.94
2559 2744 3.308402 CCTGGACCAGAAGGATTAGCAAA 60.308 47.826 23.77 0.00 38.69 3.68
2622 2807 1.522092 CATGAGCAAGGTCCCGCTA 59.478 57.895 3.40 0.00 38.99 4.26
2706 2891 2.042831 GCTGCTGAACTTGGCGGAT 61.043 57.895 0.00 0.00 37.02 4.18
2756 2941 5.516339 GTGTAAAATTGCTGGTGATGTATGC 59.484 40.000 0.00 0.00 0.00 3.14
3093 4000 1.311859 TGCTGCTCAACTGGAACAAG 58.688 50.000 0.00 0.00 38.70 3.16
3274 4181 0.627451 AGCCAATGCCATCTTCCAGA 59.373 50.000 0.00 0.00 38.69 3.86
3323 4230 1.272592 TGATCATCTTGCCAGGCCAAA 60.273 47.619 9.64 0.00 0.00 3.28
3461 4368 1.385347 TCCCACCACTCACCAAGGT 60.385 57.895 0.00 0.00 35.65 3.50
3527 4437 2.749076 GCTGTGACATTACTCCATGCAA 59.251 45.455 0.00 0.00 0.00 4.08
3633 4564 4.042062 ACTCCATGAAAGACATCCAACTCA 59.958 41.667 0.00 0.00 37.07 3.41
3800 5060 2.109181 GTAGCATGTCGGGGGAGC 59.891 66.667 0.00 0.00 0.00 4.70
3861 5121 5.456173 GTGTTTACTGCGTATCTTCTCTAGC 59.544 44.000 0.00 0.00 0.00 3.42
3864 5124 4.082895 ACGTGTTTACTGCGTATCTTCTCT 60.083 41.667 0.00 0.00 37.07 3.10
3874 5134 0.384230 CCAGCAACGTGTTTACTGCG 60.384 55.000 2.26 0.00 0.00 5.18
3906 5169 0.673985 TCAGCACAGTGTAGACGCTT 59.326 50.000 1.61 0.00 33.88 4.68
3914 5177 2.991250 ACAAGTTCTTCAGCACAGTGT 58.009 42.857 1.61 0.00 0.00 3.55
4069 5347 6.148976 ACCTTATTTTCCTTTCTACGAAGCAC 59.851 38.462 0.00 0.00 0.00 4.40
4330 5656 9.566432 GGGTTCTGAACTGAAGAATGATATTAT 57.434 33.333 19.05 0.00 36.14 1.28
4331 5657 8.772250 AGGGTTCTGAACTGAAGAATGATATTA 58.228 33.333 19.05 0.00 36.14 0.98
4332 5658 7.637511 AGGGTTCTGAACTGAAGAATGATATT 58.362 34.615 19.05 0.00 36.14 1.28
4352 5683 1.683385 GCTGAGCAAGAACAAAGGGTT 59.317 47.619 0.00 0.00 44.10 4.11
4376 5707 5.405571 CGTATTCATCATAGGAAGGAAACCG 59.594 44.000 0.00 2.35 0.00 4.44
4381 5712 3.056821 CGCCGTATTCATCATAGGAAGGA 60.057 47.826 0.00 0.00 0.00 3.36
4382 5713 3.254060 CGCCGTATTCATCATAGGAAGG 58.746 50.000 0.00 0.00 0.00 3.46
4383 5714 3.056821 TCCGCCGTATTCATCATAGGAAG 60.057 47.826 0.00 0.00 0.00 3.46
4478 5811 4.094887 GGTTGCAGATCATCATTACAACGT 59.905 41.667 0.00 0.00 37.41 3.99
4484 5817 9.752961 CATAATTTTGGTTGCAGATCATCATTA 57.247 29.630 0.00 0.00 0.00 1.90
4535 5869 1.517832 CACAGCTAAGACCTCCGGG 59.482 63.158 0.00 0.00 38.88 5.73
4576 5910 3.247411 GCTGCCAATAAAAACACACAACC 59.753 43.478 0.00 0.00 0.00 3.77
4583 5917 2.627221 TCTGCTGCTGCCAATAAAAACA 59.373 40.909 13.47 0.00 38.71 2.83
4585 5919 4.202243 ACTTTCTGCTGCTGCCAATAAAAA 60.202 37.500 13.47 4.10 38.71 1.94
4612 5946 0.465460 TCACAGAACACCAACTGGGC 60.465 55.000 0.00 0.00 42.05 5.36
4636 5974 1.371558 GAACTCCGCCAGAACCTGT 59.628 57.895 0.00 0.00 0.00 4.00
4711 6060 3.818121 AAAGTGTGCGCCGTAGCCA 62.818 57.895 4.18 0.00 36.02 4.75
4758 6107 1.402852 CGAGCTTCCTGTCATCGTCAA 60.403 52.381 0.00 0.00 0.00 3.18
4857 6206 3.118775 CGGAGTGGAATAGATGGTGTGAA 60.119 47.826 0.00 0.00 0.00 3.18
4878 6227 1.873591 GGCTTACCATCAGTTATGCCG 59.126 52.381 0.00 0.00 33.92 5.69
4950 6299 3.904136 AGCAAACGACCAAATTCAGAG 57.096 42.857 0.00 0.00 0.00 3.35
5103 6452 9.209175 CAACTAAACTGAACTGATTTAGCTACT 57.791 33.333 0.00 0.00 38.80 2.57
5105 6454 9.555727 AACAACTAAACTGAACTGATTTAGCTA 57.444 29.630 0.00 0.00 38.80 3.32
5106 6455 8.451908 AACAACTAAACTGAACTGATTTAGCT 57.548 30.769 0.00 0.00 38.80 3.32
5107 6456 8.560374 AGAACAACTAAACTGAACTGATTTAGC 58.440 33.333 0.00 0.00 38.80 3.09
5108 6457 9.869844 CAGAACAACTAAACTGAACTGATTTAG 57.130 33.333 0.00 0.00 40.31 1.85
5109 6458 8.342634 GCAGAACAACTAAACTGAACTGATTTA 58.657 33.333 0.00 0.00 32.90 1.40
5110 6459 7.148086 TGCAGAACAACTAAACTGAACTGATTT 60.148 33.333 0.00 0.00 32.90 2.17
5214 6563 6.402658 GCTCAACTATGTTAGTTTTGAGGCTC 60.403 42.308 7.79 7.79 46.27 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.