Multiple sequence alignment - TraesCS2A01G085100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G085100 chr2A 100.000 3874 0 0 1 3874 39005939 39009812 0.000000e+00 7155.0
1 TraesCS2A01G085100 chr2A 100.000 88 0 0 4266 4353 39010204 39010291 3.480000e-36 163.0
2 TraesCS2A01G085100 chr2A 90.196 51 5 0 224 274 573257518 573257568 2.810000e-07 67.6
3 TraesCS2A01G085100 chr2B 89.224 3183 216 70 274 3397 58999423 59002537 0.000000e+00 3860.0
4 TraesCS2A01G085100 chr2B 90.643 171 15 1 3546 3716 59002537 59002706 4.380000e-55 226.0
5 TraesCS2A01G085100 chr2B 86.667 165 20 2 3711 3874 536498635 536498472 9.620000e-42 182.0
6 TraesCS2A01G085100 chr2B 85.625 160 17 5 67 223 408439773 408439617 3.480000e-36 163.0
7 TraesCS2A01G085100 chr2B 91.228 57 5 0 1893 1949 554728751 554728695 1.300000e-10 78.7
8 TraesCS2A01G085100 chr2B 95.349 43 2 0 2632 2674 59001868 59001910 7.810000e-08 69.4
9 TraesCS2A01G085100 chr2D 89.484 2501 154 57 224 2689 35803217 35805643 0.000000e+00 3061.0
10 TraesCS2A01G085100 chr2D 89.508 772 44 18 2748 3492 35805657 35806418 0.000000e+00 942.0
11 TraesCS2A01G085100 chr2D 93.220 236 12 2 3486 3719 35806298 35806531 1.160000e-90 344.0
12 TraesCS2A01G085100 chr2D 91.667 156 10 3 3720 3874 472114055 472113902 3.410000e-51 213.0
13 TraesCS2A01G085100 chr2D 93.798 129 6 2 97 223 348846559 348846431 4.440000e-45 193.0
14 TraesCS2A01G085100 chr2D 87.500 80 3 1 4266 4345 72482515 72482443 7.760000e-13 86.1
15 TraesCS2A01G085100 chr3B 91.760 267 19 2 3219 3485 45249715 45249452 6.880000e-98 368.0
16 TraesCS2A01G085100 chr3B 90.667 150 8 5 79 223 814706506 814706358 1.240000e-45 195.0
17 TraesCS2A01G085100 chr7B 91.176 272 21 2 3219 3490 646949762 646950030 2.470000e-97 366.0
18 TraesCS2A01G085100 chr7B 90.833 240 16 4 3486 3719 646949909 646950148 2.530000e-82 316.0
19 TraesCS2A01G085100 chr7B 89.583 240 19 4 3486 3719 442119829 442120068 2.540000e-77 300.0
20 TraesCS2A01G085100 chr7B 89.340 197 18 2 3294 3490 442119757 442119950 1.210000e-60 244.0
21 TraesCS2A01G085100 chr7B 96.748 123 2 2 102 223 89765909 89765788 2.050000e-48 204.0
22 TraesCS2A01G085100 chr4B 90.391 281 23 3 3219 3498 650470295 650470572 2.470000e-97 366.0
23 TraesCS2A01G085100 chr4B 90.391 281 23 3 3219 3498 650509480 650509757 2.470000e-97 366.0
24 TraesCS2A01G085100 chr4B 90.833 240 16 4 3486 3719 650470442 650470681 2.530000e-82 316.0
25 TraesCS2A01G085100 chr4B 90.417 240 17 4 3486 3719 650509627 650509866 1.180000e-80 311.0
26 TraesCS2A01G085100 chr4B 96.774 124 1 3 103 223 82019115 82019238 2.050000e-48 204.0
27 TraesCS2A01G085100 chr1A 92.903 155 11 0 3720 3874 61193197 61193043 4.380000e-55 226.0
28 TraesCS2A01G085100 chr1A 96.748 123 3 1 102 223 505092387 505092509 2.050000e-48 204.0
29 TraesCS2A01G085100 chr1B 92.357 157 10 2 69 223 601258803 601258959 5.670000e-54 222.0
30 TraesCS2A01G085100 chr1B 88.344 163 17 2 3712 3874 655070209 655070369 1.240000e-45 195.0
31 TraesCS2A01G085100 chr6D 92.308 156 10 2 3720 3874 470458257 470458411 2.040000e-53 220.0
32 TraesCS2A01G085100 chr5D 90.244 164 15 1 3711 3874 502714402 502714564 3.410000e-51 213.0
33 TraesCS2A01G085100 chr5D 87.654 162 19 1 3713 3874 421306482 421306322 2.070000e-43 187.0
34 TraesCS2A01G085100 chr4A 90.968 155 14 0 3720 3874 9945749 9945595 4.410000e-50 209.0
35 TraesCS2A01G085100 chr4A 87.013 77 3 1 4269 4345 9945548 9945479 3.610000e-11 80.5
36 TraesCS2A01G085100 chrUn 96.748 123 2 2 102 223 322720541 322720420 2.050000e-48 204.0
37 TraesCS2A01G085100 chrUn 95.968 124 4 1 101 223 16890459 16890336 2.650000e-47 200.0
38 TraesCS2A01G085100 chr1D 87.742 155 17 2 3720 3874 33840292 33840140 3.460000e-41 180.0
39 TraesCS2A01G085100 chr7A 94.118 51 3 0 224 274 304150341 304150291 1.300000e-10 78.7
40 TraesCS2A01G085100 chr5B 88.235 51 6 0 224 274 482191054 482191004 1.310000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G085100 chr2A 39005939 39010291 4352 False 3659.000000 7155 100.000000 1 4353 2 chr2A.!!$F2 4352
1 TraesCS2A01G085100 chr2B 58999423 59002706 3283 False 1385.133333 3860 91.738667 274 3716 3 chr2B.!!$F1 3442
2 TraesCS2A01G085100 chr2D 35803217 35806531 3314 False 1449.000000 3061 90.737333 224 3719 3 chr2D.!!$F1 3495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
126 127 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
129 130 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
331 332 0.600255 GGGTGTGGAGTCGTGTTCTG 60.600 60.0 0.00 0.0 0.00 3.02 F
1115 1159 0.613853 TCCGGGTGGACCTTCTACAG 60.614 60.0 0.00 0.0 40.17 2.74 F
1490 1552 0.669318 CTCAAGAAGTACGCCGCCAA 60.669 55.0 0.00 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1095 1139 0.613853 TGTAGAAGGTCCACCCGGAG 60.614 60.000 0.73 0.0 43.99 4.63 R
1770 1850 1.298340 CCGTATGGTCCCTTGCACA 59.702 57.895 0.00 0.0 0.00 4.57 R
2082 2168 3.345808 CAGCCGTGGTGGAACGTG 61.346 66.667 0.00 0.0 42.01 4.49 R
2353 2441 3.474570 GTCGCCTCTGCCCCTGAT 61.475 66.667 0.00 0.0 0.00 2.90 R
2466 2554 1.053424 TTACGCCTTCCACTGAGGTT 58.947 50.000 0.00 0.0 39.02 3.50 R
3506 3622 0.615331 TGCCATCCCACTCTGAACTC 59.385 55.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.418337 AAACCTCATAAAGTTTGACCAAGTT 57.582 32.000 0.00 0.00 34.97 2.66
30 31 7.418337 AACCTCATAAAGTTTGACCAAGTTT 57.582 32.000 0.00 0.00 40.52 2.66
31 32 8.528044 AACCTCATAAAGTTTGACCAAGTTTA 57.472 30.769 0.00 2.70 42.16 2.01
32 33 8.706322 ACCTCATAAAGTTTGACCAAGTTTAT 57.294 30.769 0.00 6.36 45.90 1.40
33 34 9.143155 ACCTCATAAAGTTTGACCAAGTTTATT 57.857 29.630 8.62 0.00 43.93 1.40
83 84 9.143631 TGTGAGATCAACAATATATTAGATGCG 57.856 33.333 10.31 0.00 0.00 4.73
84 85 9.144747 GTGAGATCAACAATATATTAGATGCGT 57.855 33.333 10.31 0.00 0.00 5.24
85 86 9.143631 TGAGATCAACAATATATTAGATGCGTG 57.856 33.333 10.31 0.00 0.00 5.34
86 87 9.358872 GAGATCAACAATATATTAGATGCGTGA 57.641 33.333 10.31 3.20 0.00 4.35
87 88 9.881649 AGATCAACAATATATTAGATGCGTGAT 57.118 29.630 10.31 6.73 0.00 3.06
88 89 9.911980 GATCAACAATATATTAGATGCGTGATG 57.088 33.333 10.31 0.00 0.00 3.07
89 90 9.657419 ATCAACAATATATTAGATGCGTGATGA 57.343 29.630 0.00 0.00 0.00 2.92
90 91 8.925700 TCAACAATATATTAGATGCGTGATGAC 58.074 33.333 0.00 0.00 0.00 3.06
91 92 8.929746 CAACAATATATTAGATGCGTGATGACT 58.070 33.333 0.00 0.00 0.00 3.41
92 93 9.494271 AACAATATATTAGATGCGTGATGACTT 57.506 29.630 0.00 0.00 0.00 3.01
93 94 9.494271 ACAATATATTAGATGCGTGATGACTTT 57.506 29.630 0.00 0.00 0.00 2.66
98 99 7.849804 ATTAGATGCGTGATGACTTTAGTTT 57.150 32.000 0.00 0.00 0.00 2.66
99 100 7.667043 TTAGATGCGTGATGACTTTAGTTTT 57.333 32.000 0.00 0.00 0.00 2.43
100 101 6.560253 AGATGCGTGATGACTTTAGTTTTT 57.440 33.333 0.00 0.00 0.00 1.94
101 102 7.667043 AGATGCGTGATGACTTTAGTTTTTA 57.333 32.000 0.00 0.00 0.00 1.52
102 103 8.268850 AGATGCGTGATGACTTTAGTTTTTAT 57.731 30.769 0.00 0.00 0.00 1.40
103 104 9.378551 AGATGCGTGATGACTTTAGTTTTTATA 57.621 29.630 0.00 0.00 0.00 0.98
120 121 8.591940 AGTTTTTATATTATACTCCCTCCGTCC 58.408 37.037 0.00 0.00 0.00 4.79
121 122 6.764308 TTTATATTATACTCCCTCCGTCCG 57.236 41.667 0.00 0.00 0.00 4.79
122 123 1.920610 ATTATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
123 124 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
124 125 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
125 126 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
126 127 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
127 128 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
128 129 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
129 130 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
130 131 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
131 132 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
132 133 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
133 134 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
134 135 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
135 136 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
136 137 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
137 138 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
138 139 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
139 140 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
140 141 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
141 142 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
142 143 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
143 144 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
144 145 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
145 146 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
153 154 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
154 155 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
155 156 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
156 157 8.824783 TGTCATCAAAATGAATAAAAGGGGATT 58.175 29.630 0.00 0.00 43.42 3.01
161 162 9.499369 TCAAAATGAATAAAAGGGGATTATCCA 57.501 29.630 13.78 0.00 38.64 3.41
162 163 9.768662 CAAAATGAATAAAAGGGGATTATCCAG 57.231 33.333 13.78 0.00 38.64 3.86
163 164 9.728100 AAAATGAATAAAAGGGGATTATCCAGA 57.272 29.630 13.78 0.00 38.64 3.86
164 165 9.903190 AAATGAATAAAAGGGGATTATCCAGAT 57.097 29.630 13.78 0.00 38.64 2.90
165 166 8.890410 ATGAATAAAAGGGGATTATCCAGATG 57.110 34.615 13.78 0.00 38.64 2.90
166 167 7.825709 TGAATAAAAGGGGATTATCCAGATGT 58.174 34.615 13.78 0.00 38.64 3.06
167 168 8.954729 TGAATAAAAGGGGATTATCCAGATGTA 58.045 33.333 13.78 0.14 38.64 2.29
168 169 9.981460 GAATAAAAGGGGATTATCCAGATGTAT 57.019 33.333 13.78 2.45 38.64 2.29
173 174 9.813826 AAAGGGGATTATCCAGATGTATTTTAG 57.186 33.333 13.78 0.00 38.64 1.85
174 175 8.525729 AGGGGATTATCCAGATGTATTTTAGT 57.474 34.615 13.78 0.00 38.64 2.24
175 176 8.960064 AGGGGATTATCCAGATGTATTTTAGTT 58.040 33.333 13.78 0.00 38.64 2.24
176 177 9.232473 GGGGATTATCCAGATGTATTTTAGTTC 57.768 37.037 13.78 0.00 38.64 3.01
198 199 8.816894 AGTTCTAGATACATCTCTTTTTGTCCA 58.183 33.333 0.00 0.00 38.32 4.02
199 200 9.606631 GTTCTAGATACATCTCTTTTTGTCCAT 57.393 33.333 0.00 0.00 38.32 3.41
204 205 9.300681 AGATACATCTCTTTTTGTCCATTTTGA 57.699 29.630 0.00 0.00 29.30 2.69
206 207 9.865321 ATACATCTCTTTTTGTCCATTTTGATG 57.135 29.630 0.00 0.00 35.23 3.07
207 208 7.954835 ACATCTCTTTTTGTCCATTTTGATGA 58.045 30.769 0.00 0.00 33.85 2.92
208 209 7.869429 ACATCTCTTTTTGTCCATTTTGATGAC 59.131 33.333 0.00 0.00 33.85 3.06
209 210 7.345422 TCTCTTTTTGTCCATTTTGATGACA 57.655 32.000 0.00 0.00 0.00 3.58
210 211 7.780064 TCTCTTTTTGTCCATTTTGATGACAA 58.220 30.769 0.00 0.00 34.47 3.18
211 212 7.922278 TCTCTTTTTGTCCATTTTGATGACAAG 59.078 33.333 0.00 0.00 37.13 3.16
212 213 7.555087 TCTTTTTGTCCATTTTGATGACAAGT 58.445 30.769 0.00 0.00 37.13 3.16
213 214 8.690884 TCTTTTTGTCCATTTTGATGACAAGTA 58.309 29.630 0.00 0.00 37.13 2.24
214 215 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
215 216 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
216 217 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
217 218 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
218 219 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
219 220 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
220 221 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
221 222 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
222 223 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
228 229 7.390440 TGATGACAAGTATTTTCGGACTTTGAT 59.610 33.333 0.00 0.00 33.60 2.57
231 232 8.073768 TGACAAGTATTTTCGGACTTTGATTTC 58.926 33.333 0.00 0.00 33.60 2.17
232 233 7.936584 ACAAGTATTTTCGGACTTTGATTTCA 58.063 30.769 0.00 0.00 33.60 2.69
233 234 8.076178 ACAAGTATTTTCGGACTTTGATTTCAG 58.924 33.333 0.00 0.00 33.60 3.02
234 235 7.979444 AGTATTTTCGGACTTTGATTTCAGA 57.021 32.000 0.00 0.00 0.00 3.27
236 237 6.633500 ATTTTCGGACTTTGATTTCAGACA 57.367 33.333 0.00 0.00 0.00 3.41
238 239 6.633500 TTTCGGACTTTGATTTCAGACAAT 57.367 33.333 0.00 0.00 0.00 2.71
240 241 6.241207 TCGGACTTTGATTTCAGACAATTC 57.759 37.500 0.00 0.00 0.00 2.17
296 297 7.931948 AGTAGGTTATAATTGGACTTGGATTCG 59.068 37.037 0.00 0.00 0.00 3.34
303 304 8.746052 ATAATTGGACTTGGATTCGAATTGTA 57.254 30.769 12.81 0.00 34.44 2.41
316 317 5.621197 TCGAATTGTATGAAAACAGGGTG 57.379 39.130 0.00 0.00 0.00 4.61
319 320 5.467035 AATTGTATGAAAACAGGGTGTGG 57.533 39.130 0.00 0.00 0.00 4.17
328 329 1.335132 ACAGGGTGTGGAGTCGTGTT 61.335 55.000 0.00 0.00 0.00 3.32
331 332 0.600255 GGGTGTGGAGTCGTGTTCTG 60.600 60.000 0.00 0.00 0.00 3.02
358 359 7.169287 AGAACACTTAGTATCCTATCCCTCT 57.831 40.000 0.00 0.00 0.00 3.69
396 398 5.645497 GGTAGACCCACGATATAATCTACGT 59.355 44.000 0.00 0.00 39.50 3.57
479 483 1.557099 TGGAGCGTCCATAGTCAAGT 58.443 50.000 3.02 0.00 42.67 3.16
480 484 2.730382 TGGAGCGTCCATAGTCAAGTA 58.270 47.619 3.02 0.00 42.67 2.24
486 490 1.117150 TCCATAGTCAAGTACCGGGC 58.883 55.000 6.32 0.00 0.00 6.13
488 492 2.091720 TCCATAGTCAAGTACCGGGCTA 60.092 50.000 6.32 0.00 0.00 3.93
514 518 2.452105 GAGCTCGATGAACCTCGTTAC 58.548 52.381 0.00 0.00 39.62 2.50
515 519 2.093106 AGCTCGATGAACCTCGTTACT 58.907 47.619 0.00 0.00 39.62 2.24
535 539 2.073252 AGATCTCGGTGTCATGCCTA 57.927 50.000 0.00 0.00 0.00 3.93
553 565 3.370953 GCCTATGTGATTGTCTGGTCCTT 60.371 47.826 0.00 0.00 0.00 3.36
558 570 5.497464 TGTGATTGTCTGGTCCTTGATAA 57.503 39.130 0.00 0.00 0.00 1.75
561 573 6.599244 TGTGATTGTCTGGTCCTTGATAAATC 59.401 38.462 0.00 4.33 0.00 2.17
611 643 3.498397 CACTTTCGACACTATTTGGCACT 59.502 43.478 0.00 0.00 28.81 4.40
612 644 3.498397 ACTTTCGACACTATTTGGCACTG 59.502 43.478 0.00 0.00 28.81 3.66
613 645 2.831685 TCGACACTATTTGGCACTGT 57.168 45.000 0.00 0.00 28.81 3.55
614 646 2.412870 TCGACACTATTTGGCACTGTG 58.587 47.619 2.76 2.76 28.81 3.66
615 647 1.464608 CGACACTATTTGGCACTGTGG 59.535 52.381 10.21 0.00 28.81 4.17
616 648 1.200020 GACACTATTTGGCACTGTGGC 59.800 52.381 25.55 25.55 44.03 5.01
623 655 2.870372 GGCACTGTGGCGATGTTC 59.130 61.111 18.83 0.00 31.79 3.18
624 656 2.476051 GCACTGTGGCGATGTTCG 59.524 61.111 10.21 0.00 43.89 3.95
625 657 3.027170 GCACTGTGGCGATGTTCGG 62.027 63.158 10.21 0.00 40.84 4.30
633 665 3.499737 CGATGTTCGGCCCAGCAC 61.500 66.667 0.00 0.00 36.00 4.40
634 666 3.134127 GATGTTCGGCCCAGCACC 61.134 66.667 0.00 0.00 0.00 5.01
646 678 1.456892 CAGCACCCATCATGGCCAT 60.457 57.895 14.09 14.09 35.79 4.40
748 781 1.281925 ATCCCACTCCGGCCATCTTT 61.282 55.000 2.24 0.00 0.00 2.52
750 783 1.452108 CCACTCCGGCCATCTTTCC 60.452 63.158 2.24 0.00 0.00 3.13
751 784 1.452108 CACTCCGGCCATCTTTCCC 60.452 63.158 2.24 0.00 0.00 3.97
753 786 3.416880 TCCGGCCATCTTTCCCCC 61.417 66.667 2.24 0.00 0.00 5.40
755 788 2.193248 CGGCCATCTTTCCCCCTC 59.807 66.667 2.24 0.00 0.00 4.30
757 790 1.926426 CGGCCATCTTTCCCCCTCTT 61.926 60.000 2.24 0.00 0.00 2.85
822 858 1.035139 GAATCCCCGAGGCTTACGTA 58.965 55.000 0.00 0.00 0.00 3.57
859 895 1.674611 GCTTCGTGCGCGCGATATAT 61.675 55.000 41.84 0.00 40.76 0.86
860 896 1.530856 CTTCGTGCGCGCGATATATA 58.469 50.000 41.84 27.37 40.76 0.86
862 898 3.285745 CTTCGTGCGCGCGATATATATA 58.714 45.455 41.84 25.97 40.76 0.86
864 900 1.707117 CGTGCGCGCGATATATATACC 59.293 52.381 37.95 12.22 0.00 2.73
865 901 1.707117 GTGCGCGCGATATATATACCG 59.293 52.381 37.18 1.82 0.00 4.02
866 902 1.324718 GCGCGCGATATATATACCGG 58.675 55.000 37.18 0.00 0.00 5.28
867 903 1.324718 CGCGCGATATATATACCGGC 58.675 55.000 28.94 8.79 0.00 6.13
868 904 1.069432 CGCGCGATATATATACCGGCT 60.069 52.381 28.94 0.00 0.00 5.52
869 905 2.582687 GCGCGATATATATACCGGCTC 58.417 52.381 12.10 0.00 0.00 4.70
870 906 2.835883 CGCGATATATATACCGGCTCG 58.164 52.381 8.58 8.19 0.00 5.03
871 907 2.477754 CGCGATATATATACCGGCTCGA 59.522 50.000 8.58 0.00 0.00 4.04
931 971 6.496338 AACTCGAGTTTGGTAAATTCATCC 57.504 37.500 24.93 0.00 33.93 3.51
1115 1159 0.613853 TCCGGGTGGACCTTCTACAG 60.614 60.000 0.00 0.00 40.17 2.74
1155 1199 4.577246 CAGGAGCTCCGCTACCGC 62.577 72.222 26.95 0.25 41.11 5.68
1262 1315 1.302511 GTGGGAAGCCGAGCAAGAA 60.303 57.895 0.00 0.00 0.00 2.52
1264 1317 2.402572 GGGAAGCCGAGCAAGAAGC 61.403 63.158 0.00 0.00 46.19 3.86
1446 1508 2.982130 CGGAAGGTGAGGAGGGTG 59.018 66.667 0.00 0.00 0.00 4.61
1489 1551 1.080093 CTCAAGAAGTACGCCGCCA 60.080 57.895 0.00 0.00 0.00 5.69
1490 1552 0.669318 CTCAAGAAGTACGCCGCCAA 60.669 55.000 0.00 0.00 0.00 4.52
1491 1553 0.669318 TCAAGAAGTACGCCGCCAAG 60.669 55.000 0.00 0.00 0.00 3.61
1528 1608 3.827898 CGGCGTCTCCCCAGAGTC 61.828 72.222 0.00 0.00 41.26 3.36
1540 1620 2.363147 AGAGTCCTGCGTCTCCCC 60.363 66.667 0.00 0.00 0.00 4.81
1567 1647 1.379977 CCCCAGAGTCCTGCGTCTA 60.380 63.158 0.00 0.00 39.07 2.59
1742 1822 2.162338 TACAAGCGAACCAGGGACGG 62.162 60.000 9.10 0.00 0.00 4.79
1770 1850 3.560251 AAGCAGGGCACGGTCACT 61.560 61.111 0.00 0.00 0.00 3.41
1772 1852 4.626081 GCAGGGCACGGTCACTGT 62.626 66.667 9.63 0.00 39.61 3.55
2183 2269 2.202676 CTCCAGCGAGTTCGAGCC 60.203 66.667 5.60 0.00 43.02 4.70
2466 2554 2.449464 CTGGTTGGAAGATCAATGCCA 58.551 47.619 0.00 0.00 0.00 4.92
2505 2593 1.336887 ACCTTCACCGTGTTGAGATCG 60.337 52.381 0.00 0.00 0.00 3.69
2511 2599 0.982673 CCGTGTTGAGATCGACGAAC 59.017 55.000 0.00 0.00 33.64 3.95
2694 2783 6.864685 TCTTGTCAACATCTCATTTCATTTGC 59.135 34.615 0.00 0.00 0.00 3.68
2695 2784 6.335471 TGTCAACATCTCATTTCATTTGCT 57.665 33.333 0.00 0.00 0.00 3.91
2697 2786 6.154445 GTCAACATCTCATTTCATTTGCTGT 58.846 36.000 0.00 0.00 0.00 4.40
2715 2804 7.509141 TTGCTGTAATCTGAATGTCTTTTCA 57.491 32.000 0.00 0.00 34.55 2.69
2744 2833 7.137426 TCGTCTTCAACAGAGAGTAAGTAAAC 58.863 38.462 0.00 0.00 29.34 2.01
2825 2915 0.258484 TCCGGGGATTCTACGTGGTA 59.742 55.000 0.00 0.00 0.00 3.25
2840 2930 2.169330 GTGGTAGGTCTCGAGAAAGGT 58.831 52.381 18.55 4.53 0.00 3.50
2882 2976 2.228480 GCTCAGGTACCCCCACCAA 61.228 63.158 8.74 0.00 41.40 3.67
2907 3001 8.890124 ATTGATCATCTTCTTCTCATGTACTG 57.110 34.615 0.00 0.00 0.00 2.74
2909 3003 5.016051 TCATCTTCTTCTCATGTACTGCC 57.984 43.478 0.00 0.00 0.00 4.85
2928 3037 5.221702 ACTGCCTGAAATACATTTTGCCTTT 60.222 36.000 0.00 0.00 0.00 3.11
2929 3038 4.996122 TGCCTGAAATACATTTTGCCTTTG 59.004 37.500 0.00 0.00 0.00 2.77
2943 3052 6.971527 TTTGCCTTTGAAATGCTGAATATG 57.028 33.333 6.73 0.00 0.00 1.78
2970 3080 1.547675 CCTTGTTGGTGCAGGGTGTAT 60.548 52.381 0.00 0.00 31.80 2.29
2982 3092 2.308866 CAGGGTGTATGGGAAGAAGGTT 59.691 50.000 0.00 0.00 0.00 3.50
3072 3182 3.642848 ACCAACTGGAAAAGGTACGTCTA 59.357 43.478 1.86 0.00 38.94 2.59
3105 3215 4.269603 CGATCAGTGTATTGCTTTCTCCAG 59.730 45.833 0.00 0.00 0.00 3.86
3121 3231 3.054139 TCTCCAGGAATTGTCTTCCATGG 60.054 47.826 4.97 4.97 41.00 3.66
3135 3248 1.751351 TCCATGGTCGTCAGAGCTAAG 59.249 52.381 12.58 0.00 44.65 2.18
3190 3303 2.121506 TTGGGGGTGGAGAGGCTT 60.122 61.111 0.00 0.00 0.00 4.35
3247 3360 0.035820 CCGGATCCTTCGGTTTCCAA 60.036 55.000 10.75 0.00 42.33 3.53
3248 3361 1.408266 CCGGATCCTTCGGTTTCCAAT 60.408 52.381 10.75 0.00 42.33 3.16
3256 3369 3.347216 CTTCGGTTTCCAATCCATGAGT 58.653 45.455 0.00 0.00 0.00 3.41
3379 3495 5.359756 TGAAACATGCTGCTACTATGTAGG 58.640 41.667 0.00 0.00 34.18 3.18
3380 3496 5.128663 TGAAACATGCTGCTACTATGTAGGA 59.871 40.000 0.00 3.27 34.18 2.94
3381 3497 4.862902 ACATGCTGCTACTATGTAGGAG 57.137 45.455 17.85 17.85 37.33 3.69
3397 3513 9.743057 CTATGTAGGAGTAGAAATCAAGAGTTG 57.257 37.037 0.00 0.00 0.00 3.16
3399 3515 7.831753 TGTAGGAGTAGAAATCAAGAGTTGAG 58.168 38.462 0.00 0.00 43.98 3.02
3446 3562 5.901853 ACTCATATTTGTCAGGAGAGGATCA 59.098 40.000 0.00 0.00 37.82 2.92
3458 3574 5.070180 CAGGAGAGGATCAATACACTGACAT 59.930 44.000 0.00 0.00 37.82 3.06
3483 3599 5.012768 ACTGGCTGTACATTAGTTTGGTACT 59.987 40.000 0.00 0.00 38.50 2.73
3490 3606 8.352137 TGTACATTAGTTTGGTACTACTGCTA 57.648 34.615 0.00 0.00 41.36 3.49
3491 3607 8.246180 TGTACATTAGTTTGGTACTACTGCTAC 58.754 37.037 0.00 0.00 41.36 3.58
3492 3608 7.477945 ACATTAGTTTGGTACTACTGCTACT 57.522 36.000 0.00 0.00 41.36 2.57
3493 3609 8.585471 ACATTAGTTTGGTACTACTGCTACTA 57.415 34.615 0.00 0.00 41.36 1.82
3494 3610 9.198475 ACATTAGTTTGGTACTACTGCTACTAT 57.802 33.333 0.00 0.00 41.36 2.12
3495 3611 9.464714 CATTAGTTTGGTACTACTGCTACTATG 57.535 37.037 0.00 0.00 39.05 2.23
3496 3612 8.585471 TTAGTTTGGTACTACTGCTACTATGT 57.415 34.615 0.00 0.00 39.05 2.29
3497 3613 9.685276 TTAGTTTGGTACTACTGCTACTATGTA 57.315 33.333 0.00 0.00 39.05 2.29
3498 3614 8.223177 AGTTTGGTACTACTGCTACTATGTAG 57.777 38.462 0.00 0.77 39.43 2.74
3499 3615 8.051535 AGTTTGGTACTACTGCTACTATGTAGA 58.948 37.037 8.71 0.00 37.62 2.59
3500 3616 8.680903 GTTTGGTACTACTGCTACTATGTAGAA 58.319 37.037 8.71 0.00 37.62 2.10
3501 3617 8.812513 TTGGTACTACTGCTACTATGTAGAAA 57.187 34.615 8.71 0.00 37.62 2.52
3502 3618 8.991783 TGGTACTACTGCTACTATGTAGAAAT 57.008 34.615 8.71 0.00 37.62 2.17
3503 3619 9.064706 TGGTACTACTGCTACTATGTAGAAATC 57.935 37.037 8.71 0.00 37.62 2.17
3504 3620 9.064706 GGTACTACTGCTACTATGTAGAAATCA 57.935 37.037 8.71 0.00 37.62 2.57
3507 3623 9.409918 ACTACTGCTACTATGTAGAAATCAAGA 57.590 33.333 8.71 0.00 37.62 3.02
3508 3624 9.891828 CTACTGCTACTATGTAGAAATCAAGAG 57.108 37.037 8.71 0.00 36.66 2.85
3509 3625 8.299990 ACTGCTACTATGTAGAAATCAAGAGT 57.700 34.615 8.71 0.00 0.00 3.24
3510 3626 8.754080 ACTGCTACTATGTAGAAATCAAGAGTT 58.246 33.333 8.71 0.00 0.00 3.01
3511 3627 9.243637 CTGCTACTATGTAGAAATCAAGAGTTC 57.756 37.037 8.71 2.28 35.82 3.01
3512 3628 8.749354 TGCTACTATGTAGAAATCAAGAGTTCA 58.251 33.333 12.10 0.00 37.82 3.18
3513 3629 9.243637 GCTACTATGTAGAAATCAAGAGTTCAG 57.756 37.037 12.10 3.71 37.82 3.02
3516 3632 9.030452 ACTATGTAGAAATCAAGAGTTCAGAGT 57.970 33.333 12.10 3.28 37.82 3.24
3517 3633 9.299963 CTATGTAGAAATCAAGAGTTCAGAGTG 57.700 37.037 12.10 0.00 37.82 3.51
3518 3634 6.459066 TGTAGAAATCAAGAGTTCAGAGTGG 58.541 40.000 12.10 0.00 37.82 4.00
3519 3635 4.904241 AGAAATCAAGAGTTCAGAGTGGG 58.096 43.478 12.10 0.00 37.82 4.61
3520 3636 4.594920 AGAAATCAAGAGTTCAGAGTGGGA 59.405 41.667 12.10 0.00 37.82 4.37
3521 3637 5.250313 AGAAATCAAGAGTTCAGAGTGGGAT 59.750 40.000 12.10 0.00 37.82 3.85
3522 3638 3.969287 TCAAGAGTTCAGAGTGGGATG 57.031 47.619 0.00 0.00 0.00 3.51
3523 3639 2.568956 TCAAGAGTTCAGAGTGGGATGG 59.431 50.000 0.00 0.00 0.00 3.51
3524 3640 0.908198 AGAGTTCAGAGTGGGATGGC 59.092 55.000 0.00 0.00 0.00 4.40
3525 3641 0.615331 GAGTTCAGAGTGGGATGGCA 59.385 55.000 0.00 0.00 0.00 4.92
3526 3642 1.003580 GAGTTCAGAGTGGGATGGCAA 59.996 52.381 0.00 0.00 0.00 4.52
3527 3643 1.004044 AGTTCAGAGTGGGATGGCAAG 59.996 52.381 0.00 0.00 0.00 4.01
3528 3644 1.003580 GTTCAGAGTGGGATGGCAAGA 59.996 52.381 0.00 0.00 0.00 3.02
3529 3645 1.588239 TCAGAGTGGGATGGCAAGAT 58.412 50.000 0.00 0.00 0.00 2.40
3530 3646 1.918262 TCAGAGTGGGATGGCAAGATT 59.082 47.619 0.00 0.00 0.00 2.40
3531 3647 2.022195 CAGAGTGGGATGGCAAGATTG 58.978 52.381 0.00 0.00 0.00 2.67
3532 3648 1.918262 AGAGTGGGATGGCAAGATTGA 59.082 47.619 0.00 0.00 0.00 2.57
3533 3649 2.092538 AGAGTGGGATGGCAAGATTGAG 60.093 50.000 0.00 0.00 0.00 3.02
3534 3650 0.743097 GTGGGATGGCAAGATTGAGC 59.257 55.000 0.00 0.00 0.00 4.26
3535 3651 0.627451 TGGGATGGCAAGATTGAGCT 59.373 50.000 0.00 0.00 0.00 4.09
3536 3652 1.845791 TGGGATGGCAAGATTGAGCTA 59.154 47.619 0.00 0.00 0.00 3.32
3537 3653 2.225467 GGGATGGCAAGATTGAGCTAC 58.775 52.381 0.00 0.00 0.00 3.58
3538 3654 2.158696 GGGATGGCAAGATTGAGCTACT 60.159 50.000 0.00 0.00 0.00 2.57
3539 3655 3.137533 GGATGGCAAGATTGAGCTACTC 58.862 50.000 0.00 0.00 0.00 2.59
3540 3656 3.432749 GGATGGCAAGATTGAGCTACTCA 60.433 47.826 0.00 0.00 38.87 3.41
3541 3657 3.920231 TGGCAAGATTGAGCTACTCAT 57.080 42.857 0.00 0.00 40.39 2.90
3542 3658 4.226427 TGGCAAGATTGAGCTACTCATT 57.774 40.909 0.00 0.00 40.39 2.57
3543 3659 4.592942 TGGCAAGATTGAGCTACTCATTT 58.407 39.130 0.00 0.00 40.39 2.32
3544 3660 4.397103 TGGCAAGATTGAGCTACTCATTTG 59.603 41.667 0.00 5.63 40.39 2.32
3545 3661 4.397417 GGCAAGATTGAGCTACTCATTTGT 59.603 41.667 0.00 0.00 40.39 2.83
3546 3662 5.448360 GGCAAGATTGAGCTACTCATTTGTC 60.448 44.000 0.00 2.77 40.39 3.18
3547 3663 5.122869 GCAAGATTGAGCTACTCATTTGTCA 59.877 40.000 0.00 0.00 40.39 3.58
3548 3664 6.675002 GCAAGATTGAGCTACTCATTTGTCAG 60.675 42.308 0.00 0.00 40.39 3.51
3549 3665 5.426504 AGATTGAGCTACTCATTTGTCAGG 58.573 41.667 0.00 0.00 40.39 3.86
3550 3666 3.616956 TGAGCTACTCATTTGTCAGGG 57.383 47.619 0.00 0.00 35.39 4.45
3551 3667 2.284190 GAGCTACTCATTTGTCAGGGC 58.716 52.381 0.00 0.00 0.00 5.19
3552 3668 1.630369 AGCTACTCATTTGTCAGGGCA 59.370 47.619 0.00 0.00 0.00 5.36
3553 3669 2.012673 GCTACTCATTTGTCAGGGCAG 58.987 52.381 0.00 0.00 0.00 4.85
3554 3670 2.636830 CTACTCATTTGTCAGGGCAGG 58.363 52.381 0.00 0.00 0.00 4.85
3555 3671 1.067295 ACTCATTTGTCAGGGCAGGA 58.933 50.000 0.00 0.00 0.00 3.86
3556 3672 1.637553 ACTCATTTGTCAGGGCAGGAT 59.362 47.619 0.00 0.00 0.00 3.24
3557 3673 2.295885 CTCATTTGTCAGGGCAGGATC 58.704 52.381 0.00 0.00 0.00 3.36
3558 3674 1.019673 CATTTGTCAGGGCAGGATCG 58.980 55.000 0.00 0.00 0.00 3.69
3559 3675 0.911769 ATTTGTCAGGGCAGGATCGA 59.088 50.000 0.00 0.00 0.00 3.59
3560 3676 0.911769 TTTGTCAGGGCAGGATCGAT 59.088 50.000 0.00 0.00 0.00 3.59
3561 3677 1.788229 TTGTCAGGGCAGGATCGATA 58.212 50.000 0.00 0.00 0.00 2.92
3562 3678 1.040646 TGTCAGGGCAGGATCGATAC 58.959 55.000 0.00 0.00 0.00 2.24
3563 3679 1.040646 GTCAGGGCAGGATCGATACA 58.959 55.000 10.99 0.00 0.00 2.29
3564 3680 1.620819 GTCAGGGCAGGATCGATACAT 59.379 52.381 10.99 0.00 0.00 2.29
3565 3681 2.037772 GTCAGGGCAGGATCGATACATT 59.962 50.000 10.99 0.00 0.00 2.71
3566 3682 2.037641 TCAGGGCAGGATCGATACATTG 59.962 50.000 10.99 1.03 0.00 2.82
3567 3683 2.037641 CAGGGCAGGATCGATACATTGA 59.962 50.000 10.99 0.00 0.00 2.57
3568 3684 2.037772 AGGGCAGGATCGATACATTGAC 59.962 50.000 10.99 1.83 0.00 3.18
3569 3685 2.224281 GGGCAGGATCGATACATTGACA 60.224 50.000 10.99 0.00 0.00 3.58
3570 3686 3.062763 GGCAGGATCGATACATTGACAG 58.937 50.000 10.99 0.00 0.00 3.51
3571 3687 3.243873 GGCAGGATCGATACATTGACAGA 60.244 47.826 10.99 0.00 0.00 3.41
3572 3688 3.738282 GCAGGATCGATACATTGACAGAC 59.262 47.826 10.99 0.00 0.00 3.51
3573 3689 4.500545 GCAGGATCGATACATTGACAGACT 60.501 45.833 10.99 0.00 0.00 3.24
3574 3690 4.981054 CAGGATCGATACATTGACAGACTG 59.019 45.833 10.99 0.00 0.00 3.51
3575 3691 4.038522 AGGATCGATACATTGACAGACTGG 59.961 45.833 10.99 0.00 0.00 4.00
3576 3692 4.202161 GGATCGATACATTGACAGACTGGT 60.202 45.833 1.67 0.00 0.00 4.00
3577 3693 4.801330 TCGATACATTGACAGACTGGTT 57.199 40.909 7.51 0.00 0.00 3.67
3578 3694 4.494484 TCGATACATTGACAGACTGGTTG 58.506 43.478 7.51 1.46 0.00 3.77
3579 3695 4.021456 TCGATACATTGACAGACTGGTTGT 60.021 41.667 7.51 7.15 0.00 3.32
3580 3696 5.184287 TCGATACATTGACAGACTGGTTGTA 59.816 40.000 7.51 8.98 0.00 2.41
3581 3697 6.042777 CGATACATTGACAGACTGGTTGTAT 58.957 40.000 7.51 12.82 32.96 2.29
3582 3698 7.067737 TCGATACATTGACAGACTGGTTGTATA 59.932 37.037 7.51 0.00 31.06 1.47
3583 3699 7.867909 CGATACATTGACAGACTGGTTGTATAT 59.132 37.037 7.51 0.00 31.06 0.86
3584 3700 9.547753 GATACATTGACAGACTGGTTGTATATT 57.452 33.333 7.51 0.00 31.06 1.28
3586 3702 8.948631 ACATTGACAGACTGGTTGTATATTAG 57.051 34.615 7.51 0.00 0.00 1.73
3587 3703 8.540388 ACATTGACAGACTGGTTGTATATTAGT 58.460 33.333 7.51 0.00 0.00 2.24
3588 3704 9.383519 CATTGACAGACTGGTTGTATATTAGTT 57.616 33.333 7.51 0.00 0.00 2.24
3589 3705 9.959721 ATTGACAGACTGGTTGTATATTAGTTT 57.040 29.630 7.51 0.00 0.00 2.66
3630 3746 8.363390 ACATGTATGATGTAGGATGTAAGTGAG 58.637 37.037 0.00 0.00 0.00 3.51
3719 3835 7.349412 ACTAGCGGTGATCCTATTATTATCC 57.651 40.000 0.00 0.00 0.00 2.59
3720 3836 5.615925 AGCGGTGATCCTATTATTATCCC 57.384 43.478 0.00 0.00 0.00 3.85
3721 3837 5.281314 AGCGGTGATCCTATTATTATCCCT 58.719 41.667 0.00 0.00 0.00 4.20
3722 3838 6.441222 AGCGGTGATCCTATTATTATCCCTA 58.559 40.000 0.00 0.00 0.00 3.53
3723 3839 6.901300 AGCGGTGATCCTATTATTATCCCTAA 59.099 38.462 0.00 0.00 0.00 2.69
3724 3840 7.402071 AGCGGTGATCCTATTATTATCCCTAAA 59.598 37.037 0.00 0.00 0.00 1.85
3725 3841 8.211629 GCGGTGATCCTATTATTATCCCTAAAT 58.788 37.037 0.00 0.00 0.00 1.40
3737 3853 3.795623 TCCCTAAATACTGACTCGTGC 57.204 47.619 0.00 0.00 0.00 5.34
3738 3854 3.093814 TCCCTAAATACTGACTCGTGCA 58.906 45.455 0.00 0.00 0.00 4.57
3739 3855 3.130516 TCCCTAAATACTGACTCGTGCAG 59.869 47.826 0.00 7.17 39.26 4.41
3740 3856 2.860735 CCTAAATACTGACTCGTGCAGC 59.139 50.000 0.00 0.00 36.86 5.25
3741 3857 2.751166 AAATACTGACTCGTGCAGCT 57.249 45.000 0.00 0.00 36.86 4.24
3742 3858 2.001812 AATACTGACTCGTGCAGCTG 57.998 50.000 10.11 10.11 36.86 4.24
3743 3859 0.459237 ATACTGACTCGTGCAGCTGC 60.459 55.000 31.89 31.89 42.50 5.25
3744 3860 2.802740 TACTGACTCGTGCAGCTGCG 62.803 60.000 32.11 20.61 45.83 5.18
3752 3868 4.016629 TGCAGCTGCGCTCGTTTG 62.017 61.111 32.11 1.13 45.83 2.93
3754 3870 3.720193 CAGCTGCGCTCGTTTGCT 61.720 61.111 9.73 5.88 36.40 3.91
3755 3871 3.418068 AGCTGCGCTCGTTTGCTC 61.418 61.111 9.73 0.00 30.62 4.26
3756 3872 4.783841 GCTGCGCTCGTTTGCTCG 62.784 66.667 9.73 0.00 0.00 5.03
3757 3873 4.783841 CTGCGCTCGTTTGCTCGC 62.784 66.667 9.73 0.00 46.78 5.03
3762 3878 4.183526 CTCGTTTGCTCGCGCGAG 62.184 66.667 46.00 46.00 43.42 5.03
3785 3901 4.148825 GCACTCCAGCCGTCCGAT 62.149 66.667 0.00 0.00 0.00 4.18
3786 3902 2.202797 CACTCCAGCCGTCCGATG 60.203 66.667 0.00 0.00 0.00 3.84
3787 3903 4.148825 ACTCCAGCCGTCCGATGC 62.149 66.667 0.00 0.00 0.00 3.91
3790 3906 4.592192 CCAGCCGTCCGATGCGAT 62.592 66.667 0.00 0.00 0.00 4.58
3791 3907 3.333189 CAGCCGTCCGATGCGATG 61.333 66.667 0.00 0.00 0.00 3.84
3792 3908 3.838271 AGCCGTCCGATGCGATGT 61.838 61.111 0.00 0.00 0.00 3.06
3793 3909 3.630148 GCCGTCCGATGCGATGTG 61.630 66.667 0.00 0.00 0.00 3.21
3794 3910 2.961721 CCGTCCGATGCGATGTGG 60.962 66.667 0.00 0.00 0.00 4.17
3795 3911 3.630148 CGTCCGATGCGATGTGGC 61.630 66.667 0.00 0.00 0.00 5.01
3796 3912 3.272334 GTCCGATGCGATGTGGCC 61.272 66.667 0.00 0.00 0.00 5.36
3797 3913 4.545706 TCCGATGCGATGTGGCCC 62.546 66.667 0.00 0.00 0.00 5.80
3829 3945 3.697747 CCGACCAGGTGCCCGTTA 61.698 66.667 0.00 0.00 34.51 3.18
3830 3946 2.433664 CGACCAGGTGCCCGTTAC 60.434 66.667 0.00 0.00 0.00 2.50
3831 3947 2.433664 GACCAGGTGCCCGTTACG 60.434 66.667 0.00 0.00 0.00 3.18
3842 3958 2.613486 CGTTACGGATTGCGCGAG 59.387 61.111 12.10 0.00 0.00 5.03
3843 3959 2.856346 CGTTACGGATTGCGCGAGG 61.856 63.158 12.10 0.00 0.00 4.63
3844 3960 2.888534 TTACGGATTGCGCGAGGC 60.889 61.111 12.10 0.00 43.96 4.70
4286 4402 1.081641 TCGTCTTGTTCGAGACCGC 60.082 57.895 12.80 0.00 42.41 5.68
4287 4403 2.087009 CGTCTTGTTCGAGACCGCC 61.087 63.158 12.80 0.00 42.41 6.13
4288 4404 1.737008 GTCTTGTTCGAGACCGCCC 60.737 63.158 8.56 0.00 40.10 6.13
4289 4405 2.809601 CTTGTTCGAGACCGCCCG 60.810 66.667 0.00 0.00 35.37 6.13
4312 4428 3.979497 CCCCTCCCCCGCAGTTTT 61.979 66.667 0.00 0.00 0.00 2.43
4313 4429 2.361230 CCCTCCCCCGCAGTTTTC 60.361 66.667 0.00 0.00 0.00 2.29
4314 4430 2.434331 CCTCCCCCGCAGTTTTCA 59.566 61.111 0.00 0.00 0.00 2.69
4315 4431 1.000896 CCTCCCCCGCAGTTTTCAT 60.001 57.895 0.00 0.00 0.00 2.57
4316 4432 0.611896 CCTCCCCCGCAGTTTTCATT 60.612 55.000 0.00 0.00 0.00 2.57
4317 4433 0.811281 CTCCCCCGCAGTTTTCATTC 59.189 55.000 0.00 0.00 0.00 2.67
4318 4434 0.958382 TCCCCCGCAGTTTTCATTCG 60.958 55.000 0.00 0.00 0.00 3.34
4319 4435 0.958382 CCCCCGCAGTTTTCATTCGA 60.958 55.000 0.00 0.00 0.00 3.71
4320 4436 0.878416 CCCCGCAGTTTTCATTCGAA 59.122 50.000 0.00 0.00 0.00 3.71
4321 4437 1.401018 CCCCGCAGTTTTCATTCGAAC 60.401 52.381 0.00 0.00 0.00 3.95
4322 4438 1.535462 CCCGCAGTTTTCATTCGAACT 59.465 47.619 0.00 0.00 36.58 3.01
4323 4439 2.412847 CCCGCAGTTTTCATTCGAACTC 60.413 50.000 0.00 0.00 34.04 3.01
4324 4440 2.412847 CCGCAGTTTTCATTCGAACTCC 60.413 50.000 0.00 0.00 34.04 3.85
4325 4441 2.480419 CGCAGTTTTCATTCGAACTCCT 59.520 45.455 0.00 0.00 34.04 3.69
4326 4442 3.423645 CGCAGTTTTCATTCGAACTCCTC 60.424 47.826 0.00 0.00 34.04 3.71
4327 4443 3.748568 GCAGTTTTCATTCGAACTCCTCT 59.251 43.478 0.00 0.00 34.04 3.69
4328 4444 4.214332 GCAGTTTTCATTCGAACTCCTCTT 59.786 41.667 0.00 0.00 34.04 2.85
4329 4445 5.615764 GCAGTTTTCATTCGAACTCCTCTTC 60.616 44.000 0.00 0.00 34.04 2.87
4330 4446 4.998033 AGTTTTCATTCGAACTCCTCTTCC 59.002 41.667 0.00 0.00 30.64 3.46
4331 4447 4.891992 TTTCATTCGAACTCCTCTTCCT 57.108 40.909 0.00 0.00 0.00 3.36
4332 4448 4.457834 TTCATTCGAACTCCTCTTCCTC 57.542 45.455 0.00 0.00 0.00 3.71
4333 4449 3.702792 TCATTCGAACTCCTCTTCCTCT 58.297 45.455 0.00 0.00 0.00 3.69
4334 4450 3.697045 TCATTCGAACTCCTCTTCCTCTC 59.303 47.826 0.00 0.00 0.00 3.20
4335 4451 2.131776 TCGAACTCCTCTTCCTCTCC 57.868 55.000 0.00 0.00 0.00 3.71
4336 4452 1.107945 CGAACTCCTCTTCCTCTCCC 58.892 60.000 0.00 0.00 0.00 4.30
4337 4453 1.341581 CGAACTCCTCTTCCTCTCCCT 60.342 57.143 0.00 0.00 0.00 4.20
4338 4454 2.827755 GAACTCCTCTTCCTCTCCCTT 58.172 52.381 0.00 0.00 0.00 3.95
4339 4455 3.178046 GAACTCCTCTTCCTCTCCCTTT 58.822 50.000 0.00 0.00 0.00 3.11
4340 4456 2.827755 ACTCCTCTTCCTCTCCCTTTC 58.172 52.381 0.00 0.00 0.00 2.62
4341 4457 2.115427 CTCCTCTTCCTCTCCCTTTCC 58.885 57.143 0.00 0.00 0.00 3.13
4342 4458 1.725182 TCCTCTTCCTCTCCCTTTCCT 59.275 52.381 0.00 0.00 0.00 3.36
4343 4459 2.115427 CCTCTTCCTCTCCCTTTCCTC 58.885 57.143 0.00 0.00 0.00 3.71
4344 4460 2.292851 CCTCTTCCTCTCCCTTTCCTCT 60.293 54.545 0.00 0.00 0.00 3.69
4345 4461 3.052490 CCTCTTCCTCTCCCTTTCCTCTA 60.052 52.174 0.00 0.00 0.00 2.43
4346 4462 4.573087 CCTCTTCCTCTCCCTTTCCTCTAA 60.573 50.000 0.00 0.00 0.00 2.10
4347 4463 4.354662 TCTTCCTCTCCCTTTCCTCTAAC 58.645 47.826 0.00 0.00 0.00 2.34
4348 4464 3.847042 TCCTCTCCCTTTCCTCTAACA 57.153 47.619 0.00 0.00 0.00 2.41
4349 4465 4.141990 TCCTCTCCCTTTCCTCTAACAA 57.858 45.455 0.00 0.00 0.00 2.83
4350 4466 3.838903 TCCTCTCCCTTTCCTCTAACAAC 59.161 47.826 0.00 0.00 0.00 3.32
4351 4467 3.583086 CCTCTCCCTTTCCTCTAACAACA 59.417 47.826 0.00 0.00 0.00 3.33
4352 4468 4.323104 CCTCTCCCTTTCCTCTAACAACAG 60.323 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.418337 AACTTGGTCAAACTTTATGAGGTTT 57.582 32.000 0.00 0.00 31.23 3.27
6 7 7.418337 AAACTTGGTCAAACTTTATGAGGTT 57.582 32.000 0.00 0.00 34.99 3.50
7 8 8.706322 ATAAACTTGGTCAAACTTTATGAGGT 57.294 30.769 5.76 0.00 0.00 3.85
57 58 9.143631 CGCATCTAATATATTGTTGATCTCACA 57.856 33.333 8.28 0.00 0.00 3.58
58 59 9.144747 ACGCATCTAATATATTGTTGATCTCAC 57.855 33.333 8.28 0.00 0.00 3.51
59 60 9.143631 CACGCATCTAATATATTGTTGATCTCA 57.856 33.333 8.28 0.00 0.00 3.27
60 61 9.358872 TCACGCATCTAATATATTGTTGATCTC 57.641 33.333 8.28 3.67 0.00 2.75
61 62 9.881649 ATCACGCATCTAATATATTGTTGATCT 57.118 29.630 8.28 0.00 0.00 2.75
62 63 9.911980 CATCACGCATCTAATATATTGTTGATC 57.088 33.333 8.28 0.00 0.00 2.92
63 64 9.657419 TCATCACGCATCTAATATATTGTTGAT 57.343 29.630 8.28 6.45 0.00 2.57
64 65 8.925700 GTCATCACGCATCTAATATATTGTTGA 58.074 33.333 8.28 4.52 0.00 3.18
65 66 8.929746 AGTCATCACGCATCTAATATATTGTTG 58.070 33.333 8.28 4.40 0.00 3.33
66 67 9.494271 AAGTCATCACGCATCTAATATATTGTT 57.506 29.630 8.28 0.00 0.00 2.83
67 68 9.494271 AAAGTCATCACGCATCTAATATATTGT 57.506 29.630 8.28 0.00 0.00 2.71
72 73 9.547753 AAACTAAAGTCATCACGCATCTAATAT 57.452 29.630 0.00 0.00 0.00 1.28
73 74 8.942338 AAACTAAAGTCATCACGCATCTAATA 57.058 30.769 0.00 0.00 0.00 0.98
74 75 7.849804 AAACTAAAGTCATCACGCATCTAAT 57.150 32.000 0.00 0.00 0.00 1.73
75 76 7.667043 AAAACTAAAGTCATCACGCATCTAA 57.333 32.000 0.00 0.00 0.00 2.10
76 77 7.667043 AAAAACTAAAGTCATCACGCATCTA 57.333 32.000 0.00 0.00 0.00 1.98
77 78 6.560253 AAAAACTAAAGTCATCACGCATCT 57.440 33.333 0.00 0.00 0.00 2.90
94 95 8.591940 GGACGGAGGGAGTATAATATAAAAACT 58.408 37.037 0.00 0.00 0.00 2.66
95 96 7.543520 CGGACGGAGGGAGTATAATATAAAAAC 59.456 40.741 0.00 0.00 0.00 2.43
96 97 7.309990 CCGGACGGAGGGAGTATAATATAAAAA 60.310 40.741 4.40 0.00 37.50 1.94
97 98 6.153340 CCGGACGGAGGGAGTATAATATAAAA 59.847 42.308 4.40 0.00 37.50 1.52
98 99 5.653769 CCGGACGGAGGGAGTATAATATAAA 59.346 44.000 4.40 0.00 37.50 1.40
99 100 5.044919 TCCGGACGGAGGGAGTATAATATAA 60.045 44.000 9.76 0.00 39.76 0.98
100 101 4.474651 TCCGGACGGAGGGAGTATAATATA 59.525 45.833 9.76 0.00 39.76 0.86
101 102 3.267812 TCCGGACGGAGGGAGTATAATAT 59.732 47.826 9.76 0.00 39.76 1.28
102 103 2.644299 TCCGGACGGAGGGAGTATAATA 59.356 50.000 9.76 0.00 39.76 0.98
103 104 1.426598 TCCGGACGGAGGGAGTATAAT 59.573 52.381 9.76 0.00 39.76 1.28
104 105 0.846015 TCCGGACGGAGGGAGTATAA 59.154 55.000 9.76 0.00 39.76 0.98
105 106 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
106 107 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
107 108 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
108 109 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
109 110 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
110 111 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
111 112 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
112 113 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
113 114 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
114 115 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
115 116 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
116 117 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
117 118 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
118 119 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
119 120 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
120 121 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
127 128 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
128 129 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
129 130 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
130 131 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
135 136 9.499369 TGGATAATCCCCTTTTATTCATTTTGA 57.501 29.630 0.00 0.00 35.03 2.69
136 137 9.768662 CTGGATAATCCCCTTTTATTCATTTTG 57.231 33.333 0.00 0.00 35.03 2.44
137 138 9.728100 TCTGGATAATCCCCTTTTATTCATTTT 57.272 29.630 0.00 0.00 35.03 1.82
138 139 9.903190 ATCTGGATAATCCCCTTTTATTCATTT 57.097 29.630 0.00 0.00 35.03 2.32
139 140 9.317827 CATCTGGATAATCCCCTTTTATTCATT 57.682 33.333 0.00 0.00 35.03 2.57
140 141 8.459394 ACATCTGGATAATCCCCTTTTATTCAT 58.541 33.333 0.00 0.00 35.03 2.57
141 142 7.825709 ACATCTGGATAATCCCCTTTTATTCA 58.174 34.615 0.00 0.00 35.03 2.57
142 143 9.981460 ATACATCTGGATAATCCCCTTTTATTC 57.019 33.333 0.00 0.00 35.03 1.75
147 148 9.813826 CTAAAATACATCTGGATAATCCCCTTT 57.186 33.333 0.00 0.00 35.03 3.11
148 149 8.960064 ACTAAAATACATCTGGATAATCCCCTT 58.040 33.333 0.00 0.00 35.03 3.95
149 150 8.525729 ACTAAAATACATCTGGATAATCCCCT 57.474 34.615 0.00 0.00 35.03 4.79
150 151 9.232473 GAACTAAAATACATCTGGATAATCCCC 57.768 37.037 0.00 0.00 35.03 4.81
172 173 8.816894 TGGACAAAAAGAGATGTATCTAGAACT 58.183 33.333 0.00 0.00 37.25 3.01
173 174 9.606631 ATGGACAAAAAGAGATGTATCTAGAAC 57.393 33.333 0.00 0.00 37.25 3.01
178 179 9.300681 TCAAAATGGACAAAAAGAGATGTATCT 57.699 29.630 0.00 0.00 40.50 1.98
180 181 9.865321 CATCAAAATGGACAAAAAGAGATGTAT 57.135 29.630 0.00 0.00 0.00 2.29
181 182 9.076781 TCATCAAAATGGACAAAAAGAGATGTA 57.923 29.630 0.00 0.00 33.42 2.29
182 183 7.869429 GTCATCAAAATGGACAAAAAGAGATGT 59.131 33.333 0.00 0.00 33.42 3.06
183 184 7.868922 TGTCATCAAAATGGACAAAAAGAGATG 59.131 33.333 0.00 0.00 33.42 2.90
184 185 7.954835 TGTCATCAAAATGGACAAAAAGAGAT 58.045 30.769 0.00 0.00 33.42 2.75
185 186 7.345422 TGTCATCAAAATGGACAAAAAGAGA 57.655 32.000 0.00 0.00 33.42 3.10
186 187 7.707893 ACTTGTCATCAAAATGGACAAAAAGAG 59.292 33.333 7.70 0.00 34.98 2.85
187 188 7.555087 ACTTGTCATCAAAATGGACAAAAAGA 58.445 30.769 7.70 0.00 34.98 2.52
188 189 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
189 190 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
190 191 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
191 192 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
192 193 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
193 194 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
194 195 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
195 196 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
196 197 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
197 198 8.023128 AGTCCGAAAATACTTGTCATCAAAATG 58.977 33.333 0.00 0.00 32.87 2.32
198 199 8.110860 AGTCCGAAAATACTTGTCATCAAAAT 57.889 30.769 0.00 0.00 32.87 1.82
199 200 7.504924 AGTCCGAAAATACTTGTCATCAAAA 57.495 32.000 0.00 0.00 32.87 2.44
200 201 7.504924 AAGTCCGAAAATACTTGTCATCAAA 57.495 32.000 0.00 0.00 34.70 2.69
201 202 7.227711 TCAAAGTCCGAAAATACTTGTCATCAA 59.772 33.333 0.00 0.00 36.12 2.57
202 203 6.708502 TCAAAGTCCGAAAATACTTGTCATCA 59.291 34.615 0.00 0.00 36.12 3.07
203 204 7.129109 TCAAAGTCCGAAAATACTTGTCATC 57.871 36.000 0.00 0.00 36.12 2.92
204 205 7.687941 ATCAAAGTCCGAAAATACTTGTCAT 57.312 32.000 0.00 0.00 36.12 3.06
205 206 7.504924 AATCAAAGTCCGAAAATACTTGTCA 57.495 32.000 0.00 0.00 36.12 3.58
206 207 8.073768 TGAAATCAAAGTCCGAAAATACTTGTC 58.926 33.333 0.00 0.00 36.12 3.18
207 208 7.936584 TGAAATCAAAGTCCGAAAATACTTGT 58.063 30.769 0.00 0.00 36.12 3.16
208 209 8.289618 TCTGAAATCAAAGTCCGAAAATACTTG 58.710 33.333 0.00 0.00 36.12 3.16
209 210 8.290325 GTCTGAAATCAAAGTCCGAAAATACTT 58.710 33.333 0.00 0.00 37.54 2.24
210 211 7.444183 TGTCTGAAATCAAAGTCCGAAAATACT 59.556 33.333 0.00 0.00 0.00 2.12
211 212 7.581476 TGTCTGAAATCAAAGTCCGAAAATAC 58.419 34.615 0.00 0.00 0.00 1.89
212 213 7.737972 TGTCTGAAATCAAAGTCCGAAAATA 57.262 32.000 0.00 0.00 0.00 1.40
213 214 6.633500 TGTCTGAAATCAAAGTCCGAAAAT 57.367 33.333 0.00 0.00 0.00 1.82
214 215 6.443934 TTGTCTGAAATCAAAGTCCGAAAA 57.556 33.333 0.00 0.00 0.00 2.29
215 216 6.633500 ATTGTCTGAAATCAAAGTCCGAAA 57.367 33.333 0.00 0.00 0.00 3.46
216 217 6.486657 AGAATTGTCTGAAATCAAAGTCCGAA 59.513 34.615 0.00 0.00 30.83 4.30
217 218 5.997746 AGAATTGTCTGAAATCAAAGTCCGA 59.002 36.000 0.00 0.00 30.83 4.55
218 219 6.246420 AGAATTGTCTGAAATCAAAGTCCG 57.754 37.500 0.00 0.00 30.83 4.79
248 249 5.248705 ACTCCCTTCGATCCTTTTTACTCTT 59.751 40.000 0.00 0.00 0.00 2.85
252 253 5.105023 ACCTACTCCCTTCGATCCTTTTTAC 60.105 44.000 0.00 0.00 0.00 2.01
260 261 7.039223 TCCAATTATAACCTACTCCCTTCGATC 60.039 40.741 0.00 0.00 0.00 3.69
262 263 6.041296 GTCCAATTATAACCTACTCCCTTCGA 59.959 42.308 0.00 0.00 0.00 3.71
265 266 7.366551 CCAAGTCCAATTATAACCTACTCCCTT 60.367 40.741 0.00 0.00 0.00 3.95
296 297 5.242838 TCCACACCCTGTTTTCATACAATTC 59.757 40.000 0.00 0.00 0.00 2.17
303 304 2.810400 CGACTCCACACCCTGTTTTCAT 60.810 50.000 0.00 0.00 0.00 2.57
316 317 4.436242 TTCTATCAGAACACGACTCCAC 57.564 45.455 0.00 0.00 0.00 4.02
352 353 8.594550 GTCTACCTTTGCATTATATAAGAGGGA 58.405 37.037 1.02 0.27 0.00 4.20
358 359 6.932400 CGTGGGTCTACCTTTGCATTATATAA 59.068 38.462 0.00 0.00 41.11 0.98
365 367 0.981183 TCGTGGGTCTACCTTTGCAT 59.019 50.000 0.00 0.00 41.11 3.96
366 368 0.981183 ATCGTGGGTCTACCTTTGCA 59.019 50.000 0.00 0.00 41.11 4.08
367 369 2.973694 TATCGTGGGTCTACCTTTGC 57.026 50.000 0.00 0.00 41.11 3.68
368 370 6.994221 AGATTATATCGTGGGTCTACCTTTG 58.006 40.000 0.00 0.00 41.11 2.77
369 371 7.094463 CGTAGATTATATCGTGGGTCTACCTTT 60.094 40.741 0.00 0.00 41.11 3.11
396 398 3.371591 GCGTGTTTGGGTTATTATGACGA 59.628 43.478 0.00 0.00 0.00 4.20
467 471 1.117150 GCCCGGTACTTGACTATGGA 58.883 55.000 0.00 0.00 0.00 3.41
486 490 2.414824 GGTTCATCGAGCTCGGCTATAG 60.415 54.545 33.98 17.59 39.88 1.31
488 492 0.315568 GGTTCATCGAGCTCGGCTAT 59.684 55.000 33.98 18.81 39.88 2.97
514 518 1.959985 AGGCATGACACCGAGATCTAG 59.040 52.381 0.00 0.00 0.00 2.43
515 519 2.073252 AGGCATGACACCGAGATCTA 57.927 50.000 0.00 0.00 0.00 1.98
535 539 4.581309 ATCAAGGACCAGACAATCACAT 57.419 40.909 0.00 0.00 0.00 3.21
553 565 3.547413 CGAGGTACGCAGTCGATTTATCA 60.547 47.826 0.00 0.00 43.93 2.15
558 570 1.028330 TCCGAGGTACGCAGTCGATT 61.028 55.000 7.02 0.00 43.93 3.34
561 573 0.659427 TAATCCGAGGTACGCAGTCG 59.341 55.000 0.00 0.00 43.93 4.18
613 645 4.776322 CTGGGCCGAACATCGCCA 62.776 66.667 0.00 7.08 38.82 5.69
616 648 3.499737 GTGCTGGGCCGAACATCG 61.500 66.667 0.00 0.00 40.07 3.84
617 649 3.134127 GGTGCTGGGCCGAACATC 61.134 66.667 0.00 0.00 0.00 3.06
618 650 4.740822 GGGTGCTGGGCCGAACAT 62.741 66.667 0.00 0.00 0.00 2.71
620 652 4.740822 ATGGGTGCTGGGCCGAAC 62.741 66.667 0.00 0.00 0.00 3.95
621 653 4.424711 GATGGGTGCTGGGCCGAA 62.425 66.667 0.00 0.00 0.00 4.30
623 655 4.511246 ATGATGGGTGCTGGGCCG 62.511 66.667 0.00 0.00 0.00 6.13
624 656 2.836360 CATGATGGGTGCTGGGCC 60.836 66.667 0.00 0.00 0.00 5.80
625 657 2.836360 CCATGATGGGTGCTGGGC 60.836 66.667 2.79 0.00 32.67 5.36
626 658 2.836360 GCCATGATGGGTGCTGGG 60.836 66.667 14.26 0.00 38.19 4.45
627 659 2.836360 GGCCATGATGGGTGCTGG 60.836 66.667 14.26 0.00 38.19 4.85
628 660 0.178984 TATGGCCATGATGGGTGCTG 60.179 55.000 29.04 0.00 38.19 4.41
629 661 0.178981 GTATGGCCATGATGGGTGCT 60.179 55.000 29.04 0.13 38.19 4.40
630 662 1.181098 GGTATGGCCATGATGGGTGC 61.181 60.000 29.04 3.93 38.19 5.01
631 663 0.185658 TGGTATGGCCATGATGGGTG 59.814 55.000 29.04 0.00 43.61 4.61
632 664 2.644319 TGGTATGGCCATGATGGGT 58.356 52.632 29.04 2.72 43.61 4.51
646 678 3.740397 CGACGACGGCCTGTGGTA 61.740 66.667 13.45 0.00 39.88 3.25
666 698 3.188786 GCTGACCATGGCGACGAC 61.189 66.667 13.04 0.00 0.00 4.34
667 699 4.451150 GGCTGACCATGGCGACGA 62.451 66.667 13.04 0.00 35.26 4.20
674 706 3.490759 GACGTGCGGCTGACCATG 61.491 66.667 0.00 0.00 34.57 3.66
730 763 1.910580 GAAAGATGGCCGGAGTGGGA 61.911 60.000 5.05 0.00 38.63 4.37
731 764 1.452108 GAAAGATGGCCGGAGTGGG 60.452 63.158 5.05 0.00 38.63 4.61
733 766 1.452108 GGGAAAGATGGCCGGAGTG 60.452 63.158 5.05 0.00 0.00 3.51
788 822 4.338400 CGGGGATTCTGGTTTAAGGAAATC 59.662 45.833 0.00 0.00 0.00 2.17
790 824 3.331294 TCGGGGATTCTGGTTTAAGGAAA 59.669 43.478 0.00 0.00 0.00 3.13
792 828 2.504175 CTCGGGGATTCTGGTTTAAGGA 59.496 50.000 0.00 0.00 0.00 3.36
794 830 2.919228 CCTCGGGGATTCTGGTTTAAG 58.081 52.381 0.00 0.00 33.58 1.85
796 832 0.544697 GCCTCGGGGATTCTGGTTTA 59.455 55.000 4.80 0.00 33.58 2.01
822 858 2.750637 ACCTCGTGCGAGTCGGAT 60.751 61.111 15.52 0.00 40.44 4.18
841 877 1.530856 TATATATCGCGCGCACGAAG 58.469 50.000 32.61 14.68 46.59 3.79
847 883 1.324718 CCGGTATATATATCGCGCGC 58.675 55.000 27.95 23.91 35.64 6.86
859 895 1.806542 GGTTACGATCGAGCCGGTATA 59.193 52.381 24.34 0.00 0.00 1.47
860 896 0.595095 GGTTACGATCGAGCCGGTAT 59.405 55.000 24.34 0.00 0.00 2.73
862 898 2.803479 GGTTACGATCGAGCCGGT 59.197 61.111 24.34 0.00 0.00 5.28
864 900 2.711311 TCGGTTACGATCGAGCCG 59.289 61.111 28.93 28.93 45.59 5.52
931 971 4.873129 CGGACGCGGTGATGGGAG 62.873 72.222 12.47 0.00 0.00 4.30
992 1032 1.883084 GCGATGTCCATGGTCGTCC 60.883 63.158 21.02 12.53 37.66 4.79
993 1033 2.230940 CGCGATGTCCATGGTCGTC 61.231 63.158 20.51 19.37 37.66 4.20
994 1034 2.202743 CGCGATGTCCATGGTCGT 60.203 61.111 20.51 13.42 37.66 4.34
995 1035 2.961721 CCGCGATGTCCATGGTCG 60.962 66.667 16.67 16.67 38.34 4.79
1095 1139 0.613853 TGTAGAAGGTCCACCCGGAG 60.614 60.000 0.73 0.00 43.99 4.63
1108 1152 1.876416 GCACTTGGCGAACCTGTAGAA 60.876 52.381 0.00 0.00 36.63 2.10
1227 1271 4.180946 CGAGCAGTCGTCCTCGGG 62.181 72.222 2.38 0.00 45.20 5.14
1236 1280 2.435059 GGCTTCCCACGAGCAGTC 60.435 66.667 0.00 0.00 41.89 3.51
1237 1281 4.379243 CGGCTTCCCACGAGCAGT 62.379 66.667 0.00 0.00 41.89 4.40
1291 1344 1.443828 GAGCGATCTCCTTCCCCAC 59.556 63.158 0.00 0.00 33.19 4.61
1356 1415 4.082523 TCCTCGCCGCCTCCAAAG 62.083 66.667 0.00 0.00 0.00 2.77
1427 1489 3.787001 CCCTCCTCACCTTCCGGC 61.787 72.222 0.00 0.00 0.00 6.13
1489 1551 4.311606 GACGCTTTCTTCCTCTTCTTCTT 58.688 43.478 0.00 0.00 0.00 2.52
1490 1552 3.612955 CGACGCTTTCTTCCTCTTCTTCT 60.613 47.826 0.00 0.00 0.00 2.85
1491 1553 2.664085 CGACGCTTTCTTCCTCTTCTTC 59.336 50.000 0.00 0.00 0.00 2.87
1524 1604 3.462678 GGGGGAGACGCAGGACTC 61.463 72.222 0.00 0.00 46.93 3.36
1603 1683 1.663702 CCTTGTCGCCGTCTTTCGT 60.664 57.895 0.00 0.00 37.94 3.85
1713 1793 2.143925 GTTCGCTTGTAGGACAGCTTT 58.856 47.619 0.00 0.00 0.00 3.51
1770 1850 1.298340 CCGTATGGTCCCTTGCACA 59.702 57.895 0.00 0.00 0.00 4.57
2082 2168 3.345808 CAGCCGTGGTGGAACGTG 61.346 66.667 0.00 0.00 42.01 4.49
2353 2441 3.474570 GTCGCCTCTGCCCCTGAT 61.475 66.667 0.00 0.00 0.00 2.90
2466 2554 1.053424 TTACGCCTTCCACTGAGGTT 58.947 50.000 0.00 0.00 39.02 3.50
2469 2557 3.139029 GGTTACGCCTTCCACTGAG 57.861 57.895 0.00 0.00 0.00 3.35
2538 2626 3.764466 AGCTTCCCGTGCTCCTCG 61.764 66.667 0.00 0.00 35.67 4.63
2673 2762 6.154445 ACAGCAAATGAAATGAGATGTTGAC 58.846 36.000 0.00 0.00 28.08 3.18
2715 2804 2.560542 ACTCTCTGTTGAAGACGATGCT 59.439 45.455 0.00 0.00 0.00 3.79
2716 2805 2.953020 ACTCTCTGTTGAAGACGATGC 58.047 47.619 0.00 0.00 0.00 3.91
2825 2915 1.878656 CGCCACCTTTCTCGAGACCT 61.879 60.000 16.36 0.00 0.00 3.85
2840 2930 1.153647 CACGGTTATGAGCTCGCCA 60.154 57.895 9.64 0.00 0.00 5.69
2882 2976 7.441760 GCAGTACATGAGAAGAAGATGATCAAT 59.558 37.037 0.00 0.00 0.00 2.57
2907 3001 5.237048 TCAAAGGCAAAATGTATTTCAGGC 58.763 37.500 7.67 7.67 33.50 4.85
2909 3003 7.747357 GCATTTCAAAGGCAAAATGTATTTCAG 59.253 33.333 0.90 0.00 42.29 3.02
2928 3037 8.410912 CAAGGAAGATTCATATTCAGCATTTCA 58.589 33.333 0.00 0.00 29.96 2.69
2929 3038 8.411683 ACAAGGAAGATTCATATTCAGCATTTC 58.588 33.333 0.00 0.00 29.96 2.17
2943 3052 2.229784 CCTGCACCAACAAGGAAGATTC 59.770 50.000 0.00 0.00 41.22 2.52
2970 3080 1.374947 CTCCGCAACCTTCTTCCCA 59.625 57.895 0.00 0.00 0.00 4.37
3072 3182 6.372659 AGCAATACACTGATCGATCAAACTTT 59.627 34.615 27.09 14.75 36.18 2.66
3105 3215 2.678336 GACGACCATGGAAGACAATTCC 59.322 50.000 21.47 0.00 39.03 3.01
3121 3231 3.254060 TGAAATGCTTAGCTCTGACGAC 58.746 45.455 5.60 0.00 0.00 4.34
3135 3248 8.112099 CTGCAAGTTCAGTAAATATGAAATGC 57.888 34.615 15.34 15.34 44.22 3.56
3256 3369 4.445453 CAATCTCCATCTTGTCGGAATGA 58.555 43.478 0.00 0.00 0.00 2.57
3379 3495 7.598278 TCACTCTCAACTCTTGATTTCTACTC 58.402 38.462 0.00 0.00 39.30 2.59
3380 3496 7.450014 TCTCACTCTCAACTCTTGATTTCTACT 59.550 37.037 0.00 0.00 39.30 2.57
3381 3497 7.598278 TCTCACTCTCAACTCTTGATTTCTAC 58.402 38.462 0.00 0.00 39.30 2.59
3397 3513 4.121317 CTCAATCTTGCCATCTCACTCTC 58.879 47.826 0.00 0.00 0.00 3.20
3399 3515 2.613133 GCTCAATCTTGCCATCTCACTC 59.387 50.000 0.00 0.00 0.00 3.51
3446 3562 4.826274 ACAGCCAGTATGTCAGTGTATT 57.174 40.909 0.00 0.00 0.00 1.89
3458 3574 5.492855 ACCAAACTAATGTACAGCCAGTA 57.507 39.130 0.33 0.00 0.00 2.74
3483 3599 9.409918 ACTCTTGATTTCTACATAGTAGCAGTA 57.590 33.333 0.00 0.00 0.00 2.74
3490 3606 9.030452 ACTCTGAACTCTTGATTTCTACATAGT 57.970 33.333 3.15 0.00 0.00 2.12
3491 3607 9.299963 CACTCTGAACTCTTGATTTCTACATAG 57.700 37.037 3.15 0.00 0.00 2.23
3492 3608 8.253810 CCACTCTGAACTCTTGATTTCTACATA 58.746 37.037 3.15 0.00 0.00 2.29
3493 3609 7.102346 CCACTCTGAACTCTTGATTTCTACAT 58.898 38.462 3.15 0.00 0.00 2.29
3494 3610 6.459066 CCACTCTGAACTCTTGATTTCTACA 58.541 40.000 3.15 0.00 0.00 2.74
3495 3611 5.872070 CCCACTCTGAACTCTTGATTTCTAC 59.128 44.000 3.15 0.00 0.00 2.59
3496 3612 5.780282 TCCCACTCTGAACTCTTGATTTCTA 59.220 40.000 3.15 0.00 0.00 2.10
3497 3613 4.594920 TCCCACTCTGAACTCTTGATTTCT 59.405 41.667 3.15 0.00 0.00 2.52
3498 3614 4.899502 TCCCACTCTGAACTCTTGATTTC 58.100 43.478 0.00 0.00 0.00 2.17
3499 3615 4.982241 TCCCACTCTGAACTCTTGATTT 57.018 40.909 0.00 0.00 0.00 2.17
3500 3616 4.324099 CCATCCCACTCTGAACTCTTGATT 60.324 45.833 0.00 0.00 0.00 2.57
3501 3617 3.199508 CCATCCCACTCTGAACTCTTGAT 59.800 47.826 0.00 0.00 0.00 2.57
3502 3618 2.568956 CCATCCCACTCTGAACTCTTGA 59.431 50.000 0.00 0.00 0.00 3.02
3503 3619 2.938756 GCCATCCCACTCTGAACTCTTG 60.939 54.545 0.00 0.00 0.00 3.02
3504 3620 1.280421 GCCATCCCACTCTGAACTCTT 59.720 52.381 0.00 0.00 0.00 2.85
3505 3621 0.908198 GCCATCCCACTCTGAACTCT 59.092 55.000 0.00 0.00 0.00 3.24
3506 3622 0.615331 TGCCATCCCACTCTGAACTC 59.385 55.000 0.00 0.00 0.00 3.01
3507 3623 1.004044 CTTGCCATCCCACTCTGAACT 59.996 52.381 0.00 0.00 0.00 3.01
3508 3624 1.003580 TCTTGCCATCCCACTCTGAAC 59.996 52.381 0.00 0.00 0.00 3.18
3509 3625 1.361204 TCTTGCCATCCCACTCTGAA 58.639 50.000 0.00 0.00 0.00 3.02
3510 3626 1.588239 ATCTTGCCATCCCACTCTGA 58.412 50.000 0.00 0.00 0.00 3.27
3511 3627 2.022195 CAATCTTGCCATCCCACTCTG 58.978 52.381 0.00 0.00 0.00 3.35
3512 3628 1.918262 TCAATCTTGCCATCCCACTCT 59.082 47.619 0.00 0.00 0.00 3.24
3513 3629 2.295885 CTCAATCTTGCCATCCCACTC 58.704 52.381 0.00 0.00 0.00 3.51
3514 3630 1.684248 GCTCAATCTTGCCATCCCACT 60.684 52.381 0.00 0.00 0.00 4.00
3515 3631 0.743097 GCTCAATCTTGCCATCCCAC 59.257 55.000 0.00 0.00 0.00 4.61
3516 3632 0.627451 AGCTCAATCTTGCCATCCCA 59.373 50.000 0.00 0.00 0.00 4.37
3517 3633 2.158696 AGTAGCTCAATCTTGCCATCCC 60.159 50.000 0.00 0.00 0.00 3.85
3518 3634 3.137533 GAGTAGCTCAATCTTGCCATCC 58.862 50.000 0.00 0.00 0.00 3.51
3519 3635 3.801698 TGAGTAGCTCAATCTTGCCATC 58.198 45.455 0.00 0.00 37.57 3.51
3520 3636 3.920231 TGAGTAGCTCAATCTTGCCAT 57.080 42.857 0.00 0.00 37.57 4.40
3521 3637 3.920231 ATGAGTAGCTCAATCTTGCCA 57.080 42.857 2.80 0.00 44.04 4.92
3522 3638 4.397417 ACAAATGAGTAGCTCAATCTTGCC 59.603 41.667 2.80 0.00 44.04 4.52
3523 3639 5.122869 TGACAAATGAGTAGCTCAATCTTGC 59.877 40.000 2.80 5.32 44.04 4.01
3524 3640 6.183360 CCTGACAAATGAGTAGCTCAATCTTG 60.183 42.308 2.80 9.28 44.04 3.02
3525 3641 5.879223 CCTGACAAATGAGTAGCTCAATCTT 59.121 40.000 2.80 0.00 44.04 2.40
3526 3642 5.426504 CCTGACAAATGAGTAGCTCAATCT 58.573 41.667 2.80 0.00 44.04 2.40
3527 3643 4.574013 CCCTGACAAATGAGTAGCTCAATC 59.426 45.833 2.80 0.87 44.04 2.67
3528 3644 4.521146 CCCTGACAAATGAGTAGCTCAAT 58.479 43.478 2.80 0.00 44.04 2.57
3529 3645 3.869912 GCCCTGACAAATGAGTAGCTCAA 60.870 47.826 2.80 0.00 44.04 3.02
3530 3646 2.355108 GCCCTGACAAATGAGTAGCTCA 60.355 50.000 0.00 1.06 44.99 4.26
3531 3647 2.284190 GCCCTGACAAATGAGTAGCTC 58.716 52.381 0.00 0.00 0.00 4.09
3532 3648 1.630369 TGCCCTGACAAATGAGTAGCT 59.370 47.619 0.00 0.00 0.00 3.32
3533 3649 2.012673 CTGCCCTGACAAATGAGTAGC 58.987 52.381 0.00 0.00 0.00 3.58
3534 3650 2.237143 TCCTGCCCTGACAAATGAGTAG 59.763 50.000 0.00 0.00 0.00 2.57
3535 3651 2.265367 TCCTGCCCTGACAAATGAGTA 58.735 47.619 0.00 0.00 0.00 2.59
3536 3652 1.067295 TCCTGCCCTGACAAATGAGT 58.933 50.000 0.00 0.00 0.00 3.41
3537 3653 2.295885 GATCCTGCCCTGACAAATGAG 58.704 52.381 0.00 0.00 0.00 2.90
3538 3654 1.407299 CGATCCTGCCCTGACAAATGA 60.407 52.381 0.00 0.00 0.00 2.57
3539 3655 1.019673 CGATCCTGCCCTGACAAATG 58.980 55.000 0.00 0.00 0.00 2.32
3540 3656 0.911769 TCGATCCTGCCCTGACAAAT 59.088 50.000 0.00 0.00 0.00 2.32
3541 3657 0.911769 ATCGATCCTGCCCTGACAAA 59.088 50.000 0.00 0.00 0.00 2.83
3542 3658 1.412710 GTATCGATCCTGCCCTGACAA 59.587 52.381 0.00 0.00 0.00 3.18
3543 3659 1.040646 GTATCGATCCTGCCCTGACA 58.959 55.000 0.00 0.00 0.00 3.58
3544 3660 1.040646 TGTATCGATCCTGCCCTGAC 58.959 55.000 0.00 0.00 0.00 3.51
3545 3661 2.015456 ATGTATCGATCCTGCCCTGA 57.985 50.000 0.00 0.00 0.00 3.86
3546 3662 2.037641 TCAATGTATCGATCCTGCCCTG 59.962 50.000 0.00 0.00 0.00 4.45
3547 3663 2.037772 GTCAATGTATCGATCCTGCCCT 59.962 50.000 0.00 0.00 0.00 5.19
3548 3664 2.224281 TGTCAATGTATCGATCCTGCCC 60.224 50.000 0.00 0.00 0.00 5.36
3549 3665 3.062763 CTGTCAATGTATCGATCCTGCC 58.937 50.000 0.00 0.00 0.00 4.85
3550 3666 3.738282 GTCTGTCAATGTATCGATCCTGC 59.262 47.826 0.00 0.00 0.00 4.85
3551 3667 4.981054 CAGTCTGTCAATGTATCGATCCTG 59.019 45.833 0.00 0.00 0.00 3.86
3552 3668 4.038522 CCAGTCTGTCAATGTATCGATCCT 59.961 45.833 0.00 0.00 0.00 3.24
3553 3669 4.202161 ACCAGTCTGTCAATGTATCGATCC 60.202 45.833 0.00 0.00 0.00 3.36
3554 3670 4.938080 ACCAGTCTGTCAATGTATCGATC 58.062 43.478 0.00 0.00 0.00 3.69
3555 3671 5.111989 CAACCAGTCTGTCAATGTATCGAT 58.888 41.667 2.16 2.16 0.00 3.59
3556 3672 4.021456 ACAACCAGTCTGTCAATGTATCGA 60.021 41.667 0.00 0.00 0.00 3.59
3557 3673 4.245660 ACAACCAGTCTGTCAATGTATCG 58.754 43.478 0.00 0.00 0.00 2.92
3558 3674 9.547753 AATATACAACCAGTCTGTCAATGTATC 57.452 33.333 14.93 0.00 35.06 2.24
3561 3677 8.540388 ACTAATATACAACCAGTCTGTCAATGT 58.460 33.333 0.00 1.38 0.00 2.71
3562 3678 8.948631 ACTAATATACAACCAGTCTGTCAATG 57.051 34.615 0.00 0.00 0.00 2.82
3563 3679 9.959721 AAACTAATATACAACCAGTCTGTCAAT 57.040 29.630 0.00 0.00 0.00 2.57
3564 3680 9.214957 CAAACTAATATACAACCAGTCTGTCAA 57.785 33.333 0.00 0.00 0.00 3.18
3565 3681 7.822334 CCAAACTAATATACAACCAGTCTGTCA 59.178 37.037 0.00 0.00 0.00 3.58
3566 3682 7.822822 ACCAAACTAATATACAACCAGTCTGTC 59.177 37.037 0.00 0.00 0.00 3.51
3567 3683 7.686434 ACCAAACTAATATACAACCAGTCTGT 58.314 34.615 0.00 0.00 0.00 3.41
3568 3684 9.095065 GTACCAAACTAATATACAACCAGTCTG 57.905 37.037 0.00 0.00 0.00 3.51
3569 3685 9.043548 AGTACCAAACTAATATACAACCAGTCT 57.956 33.333 0.00 0.00 36.36 3.24
3574 3690 9.038803 GCAGTAGTACCAAACTAATATACAACC 57.961 37.037 0.00 0.00 42.37 3.77
3575 3691 9.813446 AGCAGTAGTACCAAACTAATATACAAC 57.187 33.333 0.00 0.00 42.37 3.32
3576 3692 9.811995 CAGCAGTAGTACCAAACTAATATACAA 57.188 33.333 0.00 0.00 42.37 2.41
3577 3693 7.924412 GCAGCAGTAGTACCAAACTAATATACA 59.076 37.037 0.00 0.00 42.37 2.29
3578 3694 7.924412 TGCAGCAGTAGTACCAAACTAATATAC 59.076 37.037 0.00 0.00 42.37 1.47
3579 3695 7.924412 GTGCAGCAGTAGTACCAAACTAATATA 59.076 37.037 0.00 0.00 42.37 0.86
3580 3696 6.761714 GTGCAGCAGTAGTACCAAACTAATAT 59.238 38.462 0.00 0.00 42.37 1.28
3581 3697 6.103997 GTGCAGCAGTAGTACCAAACTAATA 58.896 40.000 0.00 0.00 42.37 0.98
3582 3698 4.935808 GTGCAGCAGTAGTACCAAACTAAT 59.064 41.667 0.00 0.00 42.37 1.73
3583 3699 4.202274 TGTGCAGCAGTAGTACCAAACTAA 60.202 41.667 0.00 0.00 42.37 2.24
3584 3700 3.322541 TGTGCAGCAGTAGTACCAAACTA 59.677 43.478 0.00 0.00 39.80 2.24
3585 3701 2.104111 TGTGCAGCAGTAGTACCAAACT 59.896 45.455 0.00 0.00 42.62 2.66
3586 3702 2.489971 TGTGCAGCAGTAGTACCAAAC 58.510 47.619 0.00 0.00 0.00 2.93
3587 3703 2.920724 TGTGCAGCAGTAGTACCAAA 57.079 45.000 0.00 0.00 0.00 3.28
3588 3704 2.038426 ACATGTGCAGCAGTAGTACCAA 59.962 45.455 0.00 0.00 0.00 3.67
3589 3705 1.623311 ACATGTGCAGCAGTAGTACCA 59.377 47.619 0.00 0.00 0.00 3.25
3597 3713 3.497262 CCTACATCATACATGTGCAGCAG 59.503 47.826 9.11 0.00 33.76 4.24
3630 3746 6.805713 TGACAGAAAAATGGACTTTTCCTTC 58.194 36.000 5.43 3.80 43.41 3.46
3719 3835 2.860735 GCTGCACGAGTCAGTATTTAGG 59.139 50.000 0.00 0.00 34.21 2.69
3720 3836 3.549471 CAGCTGCACGAGTCAGTATTTAG 59.451 47.826 0.00 0.00 34.21 1.85
3721 3837 3.511699 CAGCTGCACGAGTCAGTATTTA 58.488 45.455 0.00 0.00 34.21 1.40
3722 3838 2.341257 CAGCTGCACGAGTCAGTATTT 58.659 47.619 0.00 0.00 34.21 1.40
3723 3839 2.001812 CAGCTGCACGAGTCAGTATT 57.998 50.000 0.00 0.00 34.21 1.89
3724 3840 0.459237 GCAGCTGCACGAGTCAGTAT 60.459 55.000 33.36 0.00 41.59 2.12
3725 3841 1.080501 GCAGCTGCACGAGTCAGTA 60.081 57.895 33.36 0.00 41.59 2.74
3726 3842 2.356793 GCAGCTGCACGAGTCAGT 60.357 61.111 33.36 0.00 41.59 3.41
3727 3843 3.476646 CGCAGCTGCACGAGTCAG 61.477 66.667 36.03 15.08 42.21 3.51
3768 3884 4.148825 ATCGGACGGCTGGAGTGC 62.149 66.667 0.00 0.00 0.00 4.40
3769 3885 2.202797 CATCGGACGGCTGGAGTG 60.203 66.667 0.00 0.00 0.00 3.51
3770 3886 4.148825 GCATCGGACGGCTGGAGT 62.149 66.667 0.00 0.00 0.00 3.85
3773 3889 4.592192 ATCGCATCGGACGGCTGG 62.592 66.667 0.00 0.00 0.00 4.85
3774 3890 3.333189 CATCGCATCGGACGGCTG 61.333 66.667 0.00 0.00 0.00 4.85
3775 3891 3.838271 ACATCGCATCGGACGGCT 61.838 61.111 0.00 0.00 0.00 5.52
3776 3892 3.630148 CACATCGCATCGGACGGC 61.630 66.667 0.00 0.00 0.00 5.68
3777 3893 2.961721 CCACATCGCATCGGACGG 60.962 66.667 0.00 0.00 0.00 4.79
3778 3894 3.630148 GCCACATCGCATCGGACG 61.630 66.667 0.00 0.00 0.00 4.79
3779 3895 3.272334 GGCCACATCGCATCGGAC 61.272 66.667 0.00 0.00 0.00 4.79
3780 3896 4.545706 GGGCCACATCGCATCGGA 62.546 66.667 4.39 0.00 0.00 4.55
3825 3941 2.613486 CTCGCGCAATCCGTAACG 59.387 61.111 8.75 0.00 39.71 3.18
3826 3942 3.003478 CCTCGCGCAATCCGTAAC 58.997 61.111 8.75 0.00 39.71 2.50
3827 3943 2.888534 GCCTCGCGCAATCCGTAA 60.889 61.111 8.75 0.00 39.71 3.18
4268 4384 1.081641 GCGGTCTCGAACAAGACGA 60.082 57.895 0.00 0.00 45.45 4.20
4269 4385 2.087009 GGCGGTCTCGAACAAGACG 61.087 63.158 0.00 0.00 45.45 4.18
4270 4386 1.737008 GGGCGGTCTCGAACAAGAC 60.737 63.158 0.00 0.00 44.08 3.01
4271 4387 2.654877 GGGCGGTCTCGAACAAGA 59.345 61.111 0.00 0.00 39.00 3.02
4272 4388 2.809601 CGGGCGGTCTCGAACAAG 60.810 66.667 0.00 0.00 39.00 3.16
4295 4411 3.938637 GAAAACTGCGGGGGAGGGG 62.939 68.421 0.00 0.00 0.00 4.79
4296 4412 2.361230 GAAAACTGCGGGGGAGGG 60.361 66.667 0.00 0.00 0.00 4.30
4297 4413 0.611896 AATGAAAACTGCGGGGGAGG 60.612 55.000 0.00 0.00 0.00 4.30
4298 4414 0.811281 GAATGAAAACTGCGGGGGAG 59.189 55.000 0.00 0.00 0.00 4.30
4299 4415 0.958382 CGAATGAAAACTGCGGGGGA 60.958 55.000 0.00 0.00 0.00 4.81
4300 4416 0.958382 TCGAATGAAAACTGCGGGGG 60.958 55.000 0.00 0.00 0.00 5.40
4301 4417 0.878416 TTCGAATGAAAACTGCGGGG 59.122 50.000 0.00 0.00 0.00 5.73
4302 4418 1.535462 AGTTCGAATGAAAACTGCGGG 59.465 47.619 0.00 0.00 35.46 6.13
4303 4419 2.412847 GGAGTTCGAATGAAAACTGCGG 60.413 50.000 0.00 0.00 35.90 5.69
4304 4420 2.480419 AGGAGTTCGAATGAAAACTGCG 59.520 45.455 0.00 0.00 45.28 5.18
4305 4421 3.748568 AGAGGAGTTCGAATGAAAACTGC 59.251 43.478 0.00 0.00 42.24 4.40
4306 4422 5.106908 GGAAGAGGAGTTCGAATGAAAACTG 60.107 44.000 0.00 0.00 35.90 3.16
4307 4423 4.998033 GGAAGAGGAGTTCGAATGAAAACT 59.002 41.667 0.00 0.00 38.40 2.66
4308 4424 4.998033 AGGAAGAGGAGTTCGAATGAAAAC 59.002 41.667 0.00 0.00 35.46 2.43
4309 4425 5.012148 AGAGGAAGAGGAGTTCGAATGAAAA 59.988 40.000 0.00 0.00 35.46 2.29
4310 4426 4.528596 AGAGGAAGAGGAGTTCGAATGAAA 59.471 41.667 0.00 0.00 35.46 2.69
4311 4427 4.090090 AGAGGAAGAGGAGTTCGAATGAA 58.910 43.478 0.00 0.00 0.00 2.57
4312 4428 3.697045 GAGAGGAAGAGGAGTTCGAATGA 59.303 47.826 0.00 0.00 0.00 2.57
4313 4429 3.181480 GGAGAGGAAGAGGAGTTCGAATG 60.181 52.174 0.00 0.00 0.00 2.67
4314 4430 3.028130 GGAGAGGAAGAGGAGTTCGAAT 58.972 50.000 0.00 0.00 0.00 3.34
4315 4431 2.448453 GGAGAGGAAGAGGAGTTCGAA 58.552 52.381 0.00 0.00 0.00 3.71
4316 4432 1.341187 GGGAGAGGAAGAGGAGTTCGA 60.341 57.143 0.00 0.00 0.00 3.71
4317 4433 1.107945 GGGAGAGGAAGAGGAGTTCG 58.892 60.000 0.00 0.00 0.00 3.95
4318 4434 2.543037 AGGGAGAGGAAGAGGAGTTC 57.457 55.000 0.00 0.00 0.00 3.01
4319 4435 3.178046 GAAAGGGAGAGGAAGAGGAGTT 58.822 50.000 0.00 0.00 0.00 3.01
4320 4436 2.561069 GGAAAGGGAGAGGAAGAGGAGT 60.561 54.545 0.00 0.00 0.00 3.85
4321 4437 2.115427 GGAAAGGGAGAGGAAGAGGAG 58.885 57.143 0.00 0.00 0.00 3.69
4322 4438 1.725182 AGGAAAGGGAGAGGAAGAGGA 59.275 52.381 0.00 0.00 0.00 3.71
4323 4439 2.115427 GAGGAAAGGGAGAGGAAGAGG 58.885 57.143 0.00 0.00 0.00 3.69
4324 4440 3.114643 AGAGGAAAGGGAGAGGAAGAG 57.885 52.381 0.00 0.00 0.00 2.85
4325 4441 4.202792 TGTTAGAGGAAAGGGAGAGGAAGA 60.203 45.833 0.00 0.00 0.00 2.87
4326 4442 4.097418 TGTTAGAGGAAAGGGAGAGGAAG 58.903 47.826 0.00 0.00 0.00 3.46
4327 4443 4.141990 TGTTAGAGGAAAGGGAGAGGAA 57.858 45.455 0.00 0.00 0.00 3.36
4328 4444 3.838903 GTTGTTAGAGGAAAGGGAGAGGA 59.161 47.826 0.00 0.00 0.00 3.71
4329 4445 3.583086 TGTTGTTAGAGGAAAGGGAGAGG 59.417 47.826 0.00 0.00 0.00 3.69
4330 4446 4.826556 CTGTTGTTAGAGGAAAGGGAGAG 58.173 47.826 0.00 0.00 0.00 3.20
4331 4447 4.891992 CTGTTGTTAGAGGAAAGGGAGA 57.108 45.455 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.