Multiple sequence alignment - TraesCS2A01G084700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G084700 chr2A 100.000 2726 0 0 1 2726 38907637 38910362 0.000000e+00 5035
1 TraesCS2A01G084700 chr2A 85.820 945 78 28 610 1542 38878574 38879474 0.000000e+00 952
2 TraesCS2A01G084700 chr2A 82.721 926 94 32 802 1711 38811974 38812849 0.000000e+00 763
3 TraesCS2A01G084700 chr2A 85.141 747 69 20 954 1691 38754994 38755707 0.000000e+00 726
4 TraesCS2A01G084700 chr2A 98.286 175 3 0 2181 2355 470645823 470645649 9.480000e-80 307
5 TraesCS2A01G084700 chr2A 98.286 175 3 0 2183 2357 778800571 778800745 9.480000e-80 307
6 TraesCS2A01G084700 chr2A 91.525 118 5 1 608 725 38754657 38754769 1.010000e-34 158
7 TraesCS2A01G084700 chr2A 92.174 115 4 1 611 725 38811752 38811861 1.010000e-34 158
8 TraesCS2A01G084700 chr2B 87.297 1480 101 38 737 2170 58825951 58827389 0.000000e+00 1611
9 TraesCS2A01G084700 chr2B 81.263 934 94 38 804 1691 58773229 58774127 0.000000e+00 680
10 TraesCS2A01G084700 chr2B 84.276 566 49 17 997 1547 58791520 58792060 1.450000e-142 516
11 TraesCS2A01G084700 chr2B 84.739 498 48 18 804 1298 58689247 58689719 8.830000e-130 473
12 TraesCS2A01G084700 chr2B 84.921 378 30 17 1546 1908 58835024 58835389 9.280000e-95 357
13 TraesCS2A01G084700 chr2B 83.871 372 39 14 1372 1728 58689798 58690163 4.350000e-88 335
14 TraesCS2A01G084700 chr2B 89.610 231 21 2 2499 2726 58827471 58827701 9.550000e-75 291
15 TraesCS2A01G084700 chr2B 91.748 206 15 2 2173 2376 634243337 634243132 4.440000e-73 285
16 TraesCS2A01G084700 chr2B 90.857 175 15 1 2531 2705 58838756 58838929 1.630000e-57 233
17 TraesCS2A01G084700 chr2B 77.720 386 48 19 616 991 58791110 58791467 4.600000e-48 202
18 TraesCS2A01G084700 chr2B 85.124 121 10 2 608 725 58773021 58773136 1.720000e-22 117
19 TraesCS2A01G084700 chr2D 86.798 1015 81 26 996 1990 35677846 35678827 0.000000e+00 1083
20 TraesCS2A01G084700 chr2D 83.737 867 65 32 907 1728 35531748 35532583 0.000000e+00 750
21 TraesCS2A01G084700 chr2D 86.192 717 56 24 994 1697 35639069 35639755 0.000000e+00 736
22 TraesCS2A01G084700 chr2D 90.099 303 18 6 996 1298 35564373 35564663 1.530000e-102 383
23 TraesCS2A01G084700 chr2D 86.589 343 25 11 1401 1728 35564741 35565077 2.580000e-95 359
24 TraesCS2A01G084700 chr2D 83.871 372 34 11 610 970 35638645 35639001 5.630000e-87 331
25 TraesCS2A01G084700 chr2D 83.019 371 32 14 2356 2726 35679026 35679365 9.480000e-80 307
26 TraesCS2A01G084700 chr2D 80.349 229 29 12 47 262 35637882 35638107 2.810000e-35 159
27 TraesCS2A01G084700 chr2D 92.174 115 4 1 611 725 35531440 35531549 1.010000e-34 158
28 TraesCS2A01G084700 chr7A 98.857 175 2 0 2182 2356 610448746 610448572 2.040000e-81 313
29 TraesCS2A01G084700 chr6A 98.851 174 2 0 2182 2355 446526558 446526731 7.330000e-81 311
30 TraesCS2A01G084700 chr5A 98.305 177 3 0 2182 2358 25118901 25118725 7.330000e-81 311
31 TraesCS2A01G084700 chr5A 88.966 145 9 3 2584 2726 666922357 666922218 3.610000e-39 172
32 TraesCS2A01G084700 chr1A 98.286 175 3 0 2182 2356 133163562 133163736 9.480000e-80 307
33 TraesCS2A01G084700 chr1A 97.175 177 5 0 2180 2356 508278059 508278235 1.590000e-77 300
34 TraesCS2A01G084700 chr1A 97.175 177 5 0 2180 2356 508305385 508305561 1.590000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G084700 chr2A 38907637 38910362 2725 False 5035.000000 5035 100.000000 1 2726 1 chr2A.!!$F2 2725
1 TraesCS2A01G084700 chr2A 38878574 38879474 900 False 952.000000 952 85.820000 610 1542 1 chr2A.!!$F1 932
2 TraesCS2A01G084700 chr2A 38811752 38812849 1097 False 460.500000 763 87.447500 611 1711 2 chr2A.!!$F5 1100
3 TraesCS2A01G084700 chr2A 38754657 38755707 1050 False 442.000000 726 88.333000 608 1691 2 chr2A.!!$F4 1083
4 TraesCS2A01G084700 chr2B 58825951 58827701 1750 False 951.000000 1611 88.453500 737 2726 2 chr2B.!!$F4 1989
5 TraesCS2A01G084700 chr2B 58689247 58690163 916 False 404.000000 473 84.305000 804 1728 2 chr2B.!!$F1 924
6 TraesCS2A01G084700 chr2B 58773021 58774127 1106 False 398.500000 680 83.193500 608 1691 2 chr2B.!!$F2 1083
7 TraesCS2A01G084700 chr2B 58791110 58792060 950 False 359.000000 516 80.998000 616 1547 2 chr2B.!!$F3 931
8 TraesCS2A01G084700 chr2B 58835024 58838929 3905 False 295.000000 357 87.889000 1546 2705 2 chr2B.!!$F5 1159
9 TraesCS2A01G084700 chr2D 35677846 35679365 1519 False 695.000000 1083 84.908500 996 2726 2 chr2D.!!$F4 1730
10 TraesCS2A01G084700 chr2D 35531440 35532583 1143 False 454.000000 750 87.955500 611 1728 2 chr2D.!!$F1 1117
11 TraesCS2A01G084700 chr2D 35637882 35639755 1873 False 408.666667 736 83.470667 47 1697 3 chr2D.!!$F3 1650
12 TraesCS2A01G084700 chr2D 35564373 35565077 704 False 371.000000 383 88.344000 996 1728 2 chr2D.!!$F2 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 277 0.035739 TTACTCCAACCAGGTTCGGC 59.964 55.0 0.12 0.0 39.02 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 4449 0.036765 TGCTGACGTGGGTTGTATCC 60.037 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.584185 ACCCATTGTAAGGAAAATACACAC 57.416 37.500 0.00 0.00 33.22 3.82
24 25 6.311735 ACCCATTGTAAGGAAAATACACACT 58.688 36.000 0.00 0.00 33.22 3.55
25 26 6.433093 ACCCATTGTAAGGAAAATACACACTC 59.567 38.462 0.00 0.00 33.22 3.51
26 27 6.659242 CCCATTGTAAGGAAAATACACACTCT 59.341 38.462 0.00 0.00 33.22 3.24
27 28 7.176690 CCCATTGTAAGGAAAATACACACTCTT 59.823 37.037 0.00 0.00 33.22 2.85
28 29 8.576442 CCATTGTAAGGAAAATACACACTCTTT 58.424 33.333 0.00 0.00 33.22 2.52
57 58 8.395605 AGGTAAGAGTAAATAAAAATCCCCACA 58.604 33.333 0.00 0.00 0.00 4.17
63 64 4.310022 AATAAAAATCCCCACACCTCGA 57.690 40.909 0.00 0.00 0.00 4.04
64 65 2.200373 AAAAATCCCCACACCTCGAG 57.800 50.000 5.13 5.13 0.00 4.04
107 108 3.239253 AACTCCGGCCCTGACGTT 61.239 61.111 0.00 0.00 28.54 3.99
147 148 2.434884 CGTGTCTTCGCCTGCCAT 60.435 61.111 0.00 0.00 0.00 4.40
168 170 4.950479 GCCACATGGTGAGGAGAG 57.050 61.111 0.00 0.00 35.23 3.20
174 176 0.545171 CATGGTGAGGAGAGCATGGT 59.455 55.000 0.00 0.00 44.55 3.55
197 199 6.039047 GGTGCATGAGATCATTTGTGAATACT 59.961 38.462 0.00 0.00 33.61 2.12
198 200 7.130917 GTGCATGAGATCATTTGTGAATACTC 58.869 38.462 0.00 0.00 33.61 2.59
199 201 7.012138 GTGCATGAGATCATTTGTGAATACTCT 59.988 37.037 0.00 0.00 33.61 3.24
201 203 7.569043 GCATGAGATCATTTGTGAATACTCTCG 60.569 40.741 0.00 0.00 36.12 4.04
203 205 5.053145 AGATCATTTGTGAATACTCTCGCC 58.947 41.667 0.00 0.00 0.00 5.54
204 206 4.200838 TCATTTGTGAATACTCTCGCCA 57.799 40.909 0.00 0.00 0.00 5.69
212 219 5.106712 TGTGAATACTCTCGCCATTCAAAAC 60.107 40.000 0.00 0.00 39.63 2.43
217 224 3.189287 ACTCTCGCCATTCAAAACACATC 59.811 43.478 0.00 0.00 0.00 3.06
218 225 2.487762 TCTCGCCATTCAAAACACATCC 59.512 45.455 0.00 0.00 0.00 3.51
219 226 2.489329 CTCGCCATTCAAAACACATCCT 59.511 45.455 0.00 0.00 0.00 3.24
220 227 2.890311 TCGCCATTCAAAACACATCCTT 59.110 40.909 0.00 0.00 0.00 3.36
226 240 6.511605 GCCATTCAAAACACATCCTTTTTGTC 60.512 38.462 6.67 0.00 41.48 3.18
231 245 7.382110 TCAAAACACATCCTTTTTGTCAGAAA 58.618 30.769 6.67 0.00 41.48 2.52
238 252 9.048446 CACATCCTTTTTGTCAGAAATCAAAAT 57.952 29.630 0.00 0.00 41.17 1.82
254 268 9.929722 GAAATCAAAATTTTGTTTACTCCAACC 57.070 29.630 25.98 10.51 39.18 3.77
256 270 8.661352 ATCAAAATTTTGTTTACTCCAACCAG 57.339 30.769 25.98 0.00 39.18 4.00
262 276 2.148768 GTTTACTCCAACCAGGTTCGG 58.851 52.381 0.12 8.10 39.02 4.30
263 277 0.035739 TTACTCCAACCAGGTTCGGC 59.964 55.000 0.12 0.00 39.02 5.54
267 281 0.766131 TCCAACCAGGTTCGGCTAAA 59.234 50.000 0.12 0.00 39.02 1.85
268 282 1.165270 CCAACCAGGTTCGGCTAAAG 58.835 55.000 0.12 0.00 0.00 1.85
269 283 1.271163 CCAACCAGGTTCGGCTAAAGA 60.271 52.381 0.12 0.00 0.00 2.52
270 284 2.500229 CAACCAGGTTCGGCTAAAGAA 58.500 47.619 0.12 0.00 0.00 2.52
271 285 3.081804 CAACCAGGTTCGGCTAAAGAAT 58.918 45.455 0.12 0.00 0.00 2.40
272 286 4.258543 CAACCAGGTTCGGCTAAAGAATA 58.741 43.478 0.12 0.00 0.00 1.75
273 287 4.772886 ACCAGGTTCGGCTAAAGAATAT 57.227 40.909 0.00 0.00 0.00 1.28
274 288 5.112129 ACCAGGTTCGGCTAAAGAATATT 57.888 39.130 0.00 0.00 0.00 1.28
275 289 4.881850 ACCAGGTTCGGCTAAAGAATATTG 59.118 41.667 0.00 0.00 0.00 1.90
276 290 5.123227 CCAGGTTCGGCTAAAGAATATTGA 58.877 41.667 0.00 0.00 0.00 2.57
277 291 5.007724 CCAGGTTCGGCTAAAGAATATTGAC 59.992 44.000 0.00 0.00 0.00 3.18
278 292 5.584649 CAGGTTCGGCTAAAGAATATTGACA 59.415 40.000 0.00 0.00 0.00 3.58
279 293 5.585047 AGGTTCGGCTAAAGAATATTGACAC 59.415 40.000 0.00 0.00 0.00 3.67
280 294 5.220796 GGTTCGGCTAAAGAATATTGACACC 60.221 44.000 0.00 0.00 0.00 4.16
281 295 4.448210 TCGGCTAAAGAATATTGACACCC 58.552 43.478 0.00 0.00 0.00 4.61
282 296 4.080807 TCGGCTAAAGAATATTGACACCCA 60.081 41.667 0.00 0.00 0.00 4.51
283 297 4.638421 CGGCTAAAGAATATTGACACCCAA 59.362 41.667 0.00 0.00 39.41 4.12
284 298 5.124776 CGGCTAAAGAATATTGACACCCAAA 59.875 40.000 0.00 0.00 38.43 3.28
285 299 6.349777 CGGCTAAAGAATATTGACACCCAAAA 60.350 38.462 0.00 0.00 38.43 2.44
286 300 7.555965 GGCTAAAGAATATTGACACCCAAAAT 58.444 34.615 0.00 0.00 38.43 1.82
287 301 8.691797 GGCTAAAGAATATTGACACCCAAAATA 58.308 33.333 0.00 0.00 38.43 1.40
288 302 9.516314 GCTAAAGAATATTGACACCCAAAATAC 57.484 33.333 0.00 0.00 38.43 1.89
289 303 9.716507 CTAAAGAATATTGACACCCAAAATACG 57.283 33.333 0.00 0.00 38.43 3.06
290 304 6.693315 AGAATATTGACACCCAAAATACGG 57.307 37.500 0.00 0.00 38.43 4.02
291 305 6.419791 AGAATATTGACACCCAAAATACGGA 58.580 36.000 0.00 0.00 38.43 4.69
292 306 6.887545 AGAATATTGACACCCAAAATACGGAA 59.112 34.615 0.00 0.00 38.43 4.30
293 307 7.559897 AGAATATTGACACCCAAAATACGGAAT 59.440 33.333 0.00 0.00 38.43 3.01
294 308 8.754991 AATATTGACACCCAAAATACGGAATA 57.245 30.769 0.00 0.00 38.43 1.75
295 309 6.693315 ATTGACACCCAAAATACGGAATAG 57.307 37.500 0.00 0.00 38.43 1.73
296 310 5.423704 TGACACCCAAAATACGGAATAGA 57.576 39.130 0.00 0.00 0.00 1.98
297 311 5.996644 TGACACCCAAAATACGGAATAGAT 58.003 37.500 0.00 0.00 0.00 1.98
298 312 7.127012 TGACACCCAAAATACGGAATAGATA 57.873 36.000 0.00 0.00 0.00 1.98
299 313 7.566569 TGACACCCAAAATACGGAATAGATAA 58.433 34.615 0.00 0.00 0.00 1.75
300 314 7.713507 TGACACCCAAAATACGGAATAGATAAG 59.286 37.037 0.00 0.00 0.00 1.73
301 315 6.996282 ACACCCAAAATACGGAATAGATAAGG 59.004 38.462 0.00 0.00 0.00 2.69
302 316 6.996282 CACCCAAAATACGGAATAGATAAGGT 59.004 38.462 0.00 0.00 0.00 3.50
303 317 6.996282 ACCCAAAATACGGAATAGATAAGGTG 59.004 38.462 0.00 0.00 0.00 4.00
304 318 6.072673 CCCAAAATACGGAATAGATAAGGTGC 60.073 42.308 0.00 0.00 0.00 5.01
305 319 6.710744 CCAAAATACGGAATAGATAAGGTGCT 59.289 38.462 0.00 0.00 0.00 4.40
306 320 7.876068 CCAAAATACGGAATAGATAAGGTGCTA 59.124 37.037 0.00 0.00 0.00 3.49
307 321 9.268268 CAAAATACGGAATAGATAAGGTGCTAA 57.732 33.333 0.00 0.00 0.00 3.09
308 322 9.841295 AAAATACGGAATAGATAAGGTGCTAAA 57.159 29.630 0.00 0.00 0.00 1.85
309 323 9.490379 AAATACGGAATAGATAAGGTGCTAAAG 57.510 33.333 0.00 0.00 0.00 1.85
310 324 6.726490 ACGGAATAGATAAGGTGCTAAAGA 57.274 37.500 0.00 0.00 0.00 2.52
311 325 7.304497 ACGGAATAGATAAGGTGCTAAAGAT 57.696 36.000 0.00 0.00 0.00 2.40
312 326 8.418597 ACGGAATAGATAAGGTGCTAAAGATA 57.581 34.615 0.00 0.00 0.00 1.98
313 327 9.036980 ACGGAATAGATAAGGTGCTAAAGATAT 57.963 33.333 0.00 0.00 0.00 1.63
337 351 6.791887 ATTCCACGATGCATCTAACAATAG 57.208 37.500 23.73 8.58 0.00 1.73
360 374 6.581712 AGTGATTTGCTATTGGTTGTTGTTT 58.418 32.000 0.00 0.00 0.00 2.83
361 375 7.047271 AGTGATTTGCTATTGGTTGTTGTTTT 58.953 30.769 0.00 0.00 0.00 2.43
363 377 7.850492 GTGATTTGCTATTGGTTGTTGTTTTTC 59.150 33.333 0.00 0.00 0.00 2.29
387 401 7.543756 TCTTTTTCTTTGGTAAACTTGGTCAG 58.456 34.615 0.00 0.00 0.00 3.51
390 404 4.124238 TCTTTGGTAAACTTGGTCAGACG 58.876 43.478 0.00 0.00 0.00 4.18
398 412 5.883503 AAACTTGGTCAGACGTTACAAAA 57.116 34.783 0.00 0.00 0.00 2.44
404 418 6.438259 TGGTCAGACGTTACAAAATTTGAA 57.562 33.333 13.19 0.00 0.00 2.69
406 420 5.684184 GGTCAGACGTTACAAAATTTGAACC 59.316 40.000 13.19 2.52 0.00 3.62
407 421 5.394322 GTCAGACGTTACAAAATTTGAACCG 59.606 40.000 13.19 12.18 0.00 4.44
408 422 4.673311 CAGACGTTACAAAATTTGAACCGG 59.327 41.667 13.19 0.00 0.00 5.28
424 438 7.614124 TTGAACCGGGACAAAACTAATATAC 57.386 36.000 6.32 0.00 0.00 1.47
426 440 7.166851 TGAACCGGGACAAAACTAATATACAA 58.833 34.615 6.32 0.00 0.00 2.41
464 478 7.443259 AGAATAGAGGAGTAGTAATTCTCGC 57.557 40.000 0.29 0.00 29.94 5.03
465 479 6.431852 AGAATAGAGGAGTAGTAATTCTCGCC 59.568 42.308 0.29 0.00 29.94 5.54
466 480 3.899726 AGAGGAGTAGTAATTCTCGCCA 58.100 45.455 0.29 0.00 0.00 5.69
467 481 3.886505 AGAGGAGTAGTAATTCTCGCCAG 59.113 47.826 0.29 0.00 0.00 4.85
468 482 3.633065 GAGGAGTAGTAATTCTCGCCAGT 59.367 47.826 0.00 0.00 0.00 4.00
469 483 4.024670 AGGAGTAGTAATTCTCGCCAGTT 58.975 43.478 0.00 0.00 0.00 3.16
470 484 4.113354 GGAGTAGTAATTCTCGCCAGTTG 58.887 47.826 0.00 0.00 0.00 3.16
471 485 4.381718 GGAGTAGTAATTCTCGCCAGTTGT 60.382 45.833 0.00 0.00 0.00 3.32
472 486 4.495422 AGTAGTAATTCTCGCCAGTTGTG 58.505 43.478 0.00 0.00 0.00 3.33
489 503 6.676950 CAGTTGTGGAGCATTTATAAACACA 58.323 36.000 12.20 12.20 35.79 3.72
490 504 7.144661 CAGTTGTGGAGCATTTATAAACACAA 58.855 34.615 19.46 19.46 42.79 3.33
491 505 7.326789 CAGTTGTGGAGCATTTATAAACACAAG 59.673 37.037 22.00 13.20 44.74 3.16
492 506 7.230510 AGTTGTGGAGCATTTATAAACACAAGA 59.769 33.333 22.00 8.12 44.74 3.02
493 507 7.144722 TGTGGAGCATTTATAAACACAAGAG 57.855 36.000 13.31 0.00 34.80 2.85
494 508 6.714810 TGTGGAGCATTTATAAACACAAGAGT 59.285 34.615 13.31 0.00 34.80 3.24
495 509 7.230510 TGTGGAGCATTTATAAACACAAGAGTT 59.769 33.333 13.31 0.00 34.80 3.01
496 510 8.726988 GTGGAGCATTTATAAACACAAGAGTTA 58.273 33.333 0.00 0.00 0.00 2.24
497 511 9.461312 TGGAGCATTTATAAACACAAGAGTTAT 57.539 29.630 0.00 0.00 0.00 1.89
500 514 9.988350 AGCATTTATAAACACAAGAGTTATTCG 57.012 29.630 0.00 0.00 0.00 3.34
501 515 9.221775 GCATTTATAAACACAAGAGTTATTCGG 57.778 33.333 0.00 0.00 0.00 4.30
502 516 9.716507 CATTTATAAACACAAGAGTTATTCGGG 57.283 33.333 0.00 0.00 0.00 5.14
503 517 7.852971 TTATAAACACAAGAGTTATTCGGGG 57.147 36.000 0.00 0.00 0.00 5.73
504 518 4.360951 AAACACAAGAGTTATTCGGGGA 57.639 40.909 0.00 0.00 0.00 4.81
505 519 4.360951 AACACAAGAGTTATTCGGGGAA 57.639 40.909 0.00 0.00 0.00 3.97
506 520 4.569719 ACACAAGAGTTATTCGGGGAAT 57.430 40.909 0.00 0.00 36.20 3.01
507 521 4.514401 ACACAAGAGTTATTCGGGGAATC 58.486 43.478 0.00 0.00 33.95 2.52
508 522 4.225267 ACACAAGAGTTATTCGGGGAATCT 59.775 41.667 0.00 0.00 33.95 2.40
509 523 4.811557 CACAAGAGTTATTCGGGGAATCTC 59.188 45.833 0.00 0.00 33.95 2.75
510 524 4.141688 ACAAGAGTTATTCGGGGAATCTCC 60.142 45.833 0.00 0.00 33.95 3.71
511 525 3.930035 AGAGTTATTCGGGGAATCTCCT 58.070 45.455 0.00 0.00 36.57 3.69
512 526 4.299485 AGAGTTATTCGGGGAATCTCCTT 58.701 43.478 0.00 0.00 36.57 3.36
513 527 4.345547 AGAGTTATTCGGGGAATCTCCTTC 59.654 45.833 0.00 0.00 36.57 3.46
514 528 4.299485 AGTTATTCGGGGAATCTCCTTCT 58.701 43.478 0.00 0.00 36.57 2.85
515 529 4.722279 AGTTATTCGGGGAATCTCCTTCTT 59.278 41.667 0.00 0.00 36.57 2.52
516 530 5.191921 AGTTATTCGGGGAATCTCCTTCTTT 59.808 40.000 0.00 0.00 36.57 2.52
517 531 4.592997 ATTCGGGGAATCTCCTTCTTTT 57.407 40.909 0.00 0.00 36.57 2.27
518 532 3.350219 TCGGGGAATCTCCTTCTTTTG 57.650 47.619 0.00 0.00 36.57 2.44
519 533 1.745653 CGGGGAATCTCCTTCTTTTGC 59.254 52.381 0.00 0.00 36.57 3.68
520 534 2.807676 GGGGAATCTCCTTCTTTTGCA 58.192 47.619 0.00 0.00 36.57 4.08
521 535 3.165071 GGGGAATCTCCTTCTTTTGCAA 58.835 45.455 0.00 0.00 36.57 4.08
522 536 3.578282 GGGGAATCTCCTTCTTTTGCAAA 59.422 43.478 8.05 8.05 36.57 3.68
523 537 4.040339 GGGGAATCTCCTTCTTTTGCAAAA 59.960 41.667 22.61 22.61 36.57 2.44
524 538 5.454613 GGGGAATCTCCTTCTTTTGCAAAAA 60.455 40.000 23.92 10.68 36.57 1.94
639 958 5.403246 ACATGTGACGACTCTTTCATAGTC 58.597 41.667 0.00 0.00 40.01 2.59
640 959 4.436242 TGTGACGACTCTTTCATAGTCC 57.564 45.455 0.00 0.00 40.24 3.85
641 960 3.824443 TGTGACGACTCTTTCATAGTCCA 59.176 43.478 0.00 0.00 40.24 4.02
642 961 4.082733 TGTGACGACTCTTTCATAGTCCAG 60.083 45.833 0.00 0.00 40.24 3.86
665 987 2.047655 TTGGTAGAACTGCCCGCG 60.048 61.111 0.00 0.00 34.17 6.46
683 1005 1.676635 GGCCTGCAGAGCATTGTCA 60.677 57.895 17.39 0.00 38.13 3.58
685 1007 1.930908 GCCTGCAGAGCATTGTCACC 61.931 60.000 17.39 0.00 38.13 4.02
686 1008 0.607217 CCTGCAGAGCATTGTCACCA 60.607 55.000 17.39 0.00 38.13 4.17
687 1009 1.460504 CTGCAGAGCATTGTCACCAT 58.539 50.000 8.42 0.00 38.13 3.55
688 1010 1.132453 CTGCAGAGCATTGTCACCATG 59.868 52.381 8.42 0.00 38.13 3.66
726 1052 1.304713 ATGCCTGCCCAACAAGAGG 60.305 57.895 0.00 0.00 0.00 3.69
730 1056 1.534729 CCTGCCCAACAAGAGGTTAC 58.465 55.000 0.00 0.00 37.72 2.50
781 1163 5.126545 GGCCAATTTTCTACGAACCCTAATT 59.873 40.000 0.00 0.00 0.00 1.40
793 1175 7.854557 ACGAACCCTAATTAACTAATCAACC 57.145 36.000 0.00 0.00 0.00 3.77
797 1187 5.820947 ACCCTAATTAACTAATCAACCAGCG 59.179 40.000 0.00 0.00 0.00 5.18
798 1188 5.820947 CCCTAATTAACTAATCAACCAGCGT 59.179 40.000 0.00 0.00 0.00 5.07
799 1189 6.317893 CCCTAATTAACTAATCAACCAGCGTT 59.682 38.462 0.00 0.00 0.00 4.84
815 1233 1.578583 CGTTGGTTGACTCCTTCGTT 58.421 50.000 0.00 0.00 0.00 3.85
832 1250 2.734606 TCGTTTTATCACCTCGCAACAG 59.265 45.455 0.00 0.00 0.00 3.16
952 1390 4.796231 CACGCCCCGTCCTTCTCG 62.796 72.222 0.00 0.00 38.32 4.04
1161 1651 2.887568 CATCACGTCTCTGCCGGC 60.888 66.667 22.73 22.73 0.00 6.13
1162 1652 4.498520 ATCACGTCTCTGCCGGCG 62.499 66.667 23.90 16.91 0.00 6.46
1182 1675 3.948719 GGCGTTGACCCAGACCCA 61.949 66.667 0.00 0.00 0.00 4.51
1185 1678 2.836154 GTTGACCCAGACCCAGCA 59.164 61.111 0.00 0.00 0.00 4.41
1205 1698 2.440430 CGCCGGAGAAGGAGGAGA 60.440 66.667 5.05 0.00 0.00 3.71
1275 1768 2.443390 GGCCAGGTCTACCGCCTA 60.443 66.667 9.97 0.00 38.84 3.93
1336 1874 4.439305 TCTTGGATTGGATTCTTTTGCG 57.561 40.909 0.00 0.00 0.00 4.85
1339 1877 2.491693 TGGATTGGATTCTTTTGCGTCC 59.508 45.455 0.00 0.00 0.00 4.79
1372 1942 5.365025 TCCCTCTCTTTCTTACATGGAGATG 59.635 44.000 0.00 0.00 33.44 2.90
1583 2171 0.955428 GACCATCAGCAACGGAAGCA 60.955 55.000 0.00 0.00 0.00 3.91
1586 2174 2.042831 ATCAGCAACGGAAGCAGCC 61.043 57.895 0.00 0.00 35.12 4.85
1692 2307 4.517703 GAGTCGTCGTCGAGCGGG 62.518 72.222 4.68 0.00 46.96 6.13
1753 2372 2.456073 TGGTAGGAGGAGCTAGGAAC 57.544 55.000 0.00 0.00 0.00 3.62
1848 2482 0.378962 CCCTGAACGTGCGTGAAAAA 59.621 50.000 0.00 0.00 0.00 1.94
1859 2493 4.144108 CGTGCGTGAAAAACTGAAAATACG 60.144 41.667 0.00 0.00 0.00 3.06
1872 2506 1.262640 AAATACGTCCACCGGCCTCT 61.263 55.000 0.00 0.00 42.24 3.69
1873 2507 1.956629 AATACGTCCACCGGCCTCTG 61.957 60.000 0.00 0.00 42.24 3.35
1918 2554 4.541482 GTGATGCGGCACCATGCG 62.541 66.667 4.03 0.00 46.21 4.73
1921 2557 4.118995 ATGCGGCACCATGCGTTG 62.119 61.111 4.03 0.00 46.21 4.10
1947 2583 4.223964 GCCGTCGAATCGCCAAGC 62.224 66.667 0.00 0.00 0.00 4.01
2032 4216 1.202580 GCTATTCCTGGTCACGCAGAT 60.203 52.381 0.00 0.00 0.00 2.90
2037 4221 3.647649 CTGGTCACGCAGATGCCGA 62.648 63.158 0.00 0.00 37.91 5.54
2038 4222 2.887568 GGTCACGCAGATGCCGAG 60.888 66.667 0.00 0.00 37.91 4.63
2079 4263 5.978814 ACCTTACTGCGAGATTACAAGATT 58.021 37.500 0.00 0.00 0.00 2.40
2090 4274 7.479916 GCGAGATTACAAGATTTCAGTTTCAAG 59.520 37.037 0.00 0.00 0.00 3.02
2096 4280 5.166398 CAAGATTTCAGTTTCAAGGATGGC 58.834 41.667 0.00 0.00 0.00 4.40
2124 4327 5.290885 CCACATTGATGCAGAAATGTCATTG 59.709 40.000 21.01 13.65 43.41 2.82
2184 4387 3.154827 ACACCACCATTCAACTTAGGG 57.845 47.619 0.00 0.00 0.00 3.53
2185 4388 2.714250 ACACCACCATTCAACTTAGGGA 59.286 45.455 0.00 0.00 0.00 4.20
2186 4389 3.244911 ACACCACCATTCAACTTAGGGAG 60.245 47.826 0.00 0.00 0.00 4.30
2187 4390 2.986728 ACCACCATTCAACTTAGGGAGT 59.013 45.455 0.00 0.00 41.47 3.85
2188 4391 4.019681 CACCACCATTCAACTTAGGGAGTA 60.020 45.833 0.00 0.00 37.72 2.59
2189 4392 4.019591 ACCACCATTCAACTTAGGGAGTAC 60.020 45.833 0.00 0.00 37.72 2.73
2190 4393 4.514401 CACCATTCAACTTAGGGAGTACC 58.486 47.826 0.00 0.00 37.72 3.34
2221 4424 7.348080 TCATCTAGATGAGACGTAATTTGGT 57.652 36.000 27.93 0.00 42.42 3.67
2222 4425 7.426410 TCATCTAGATGAGACGTAATTTGGTC 58.574 38.462 27.93 1.46 42.42 4.02
2223 4426 7.285629 TCATCTAGATGAGACGTAATTTGGTCT 59.714 37.037 27.93 9.96 45.71 3.85
2231 4434 4.935808 AGACGTAATTTGGTCTCATTCACC 59.064 41.667 5.52 0.00 39.18 4.02
2232 4435 4.906618 ACGTAATTTGGTCTCATTCACCT 58.093 39.130 0.00 0.00 34.66 4.00
2233 4436 4.695455 ACGTAATTTGGTCTCATTCACCTG 59.305 41.667 0.00 0.00 34.66 4.00
2234 4437 4.094887 CGTAATTTGGTCTCATTCACCTGG 59.905 45.833 0.00 0.00 34.66 4.45
2235 4438 4.387026 AATTTGGTCTCATTCACCTGGA 57.613 40.909 0.00 0.00 34.66 3.86
2236 4439 3.874383 TTTGGTCTCATTCACCTGGAA 57.126 42.857 0.00 0.00 40.46 3.53
2237 4440 3.874383 TTGGTCTCATTCACCTGGAAA 57.126 42.857 0.00 0.00 39.39 3.13
2238 4441 3.874383 TGGTCTCATTCACCTGGAAAA 57.126 42.857 0.00 0.00 39.39 2.29
2239 4442 3.486383 TGGTCTCATTCACCTGGAAAAC 58.514 45.455 0.00 0.00 39.39 2.43
2240 4443 3.117701 TGGTCTCATTCACCTGGAAAACA 60.118 43.478 0.00 0.00 39.39 2.83
2241 4444 3.888930 GGTCTCATTCACCTGGAAAACAA 59.111 43.478 0.00 0.00 39.39 2.83
2242 4445 4.022849 GGTCTCATTCACCTGGAAAACAAG 60.023 45.833 0.00 0.00 39.39 3.16
2243 4446 4.821805 GTCTCATTCACCTGGAAAACAAGA 59.178 41.667 0.00 0.00 39.39 3.02
2244 4447 5.299279 GTCTCATTCACCTGGAAAACAAGAA 59.701 40.000 0.00 0.00 39.39 2.52
2245 4448 5.299279 TCTCATTCACCTGGAAAACAAGAAC 59.701 40.000 0.00 0.00 39.39 3.01
2246 4449 4.036262 TCATTCACCTGGAAAACAAGAACG 59.964 41.667 0.00 0.00 39.39 3.95
2247 4450 2.294074 TCACCTGGAAAACAAGAACGG 58.706 47.619 0.00 0.00 0.00 4.44
2248 4451 2.092861 TCACCTGGAAAACAAGAACGGA 60.093 45.455 0.00 0.00 0.00 4.69
2249 4452 2.884639 CACCTGGAAAACAAGAACGGAT 59.115 45.455 0.00 0.00 0.00 4.18
2250 4453 4.069304 CACCTGGAAAACAAGAACGGATA 58.931 43.478 0.00 0.00 0.00 2.59
2251 4454 4.070009 ACCTGGAAAACAAGAACGGATAC 58.930 43.478 0.00 0.00 0.00 2.24
2252 4455 4.069304 CCTGGAAAACAAGAACGGATACA 58.931 43.478 0.00 0.00 0.00 2.29
2253 4456 4.517453 CCTGGAAAACAAGAACGGATACAA 59.483 41.667 0.00 0.00 0.00 2.41
2254 4457 5.427036 TGGAAAACAAGAACGGATACAAC 57.573 39.130 0.00 0.00 0.00 3.32
2255 4458 4.276431 TGGAAAACAAGAACGGATACAACC 59.724 41.667 0.00 0.00 0.00 3.77
2256 4459 4.320714 GGAAAACAAGAACGGATACAACCC 60.321 45.833 0.00 0.00 0.00 4.11
2257 4460 3.495434 AACAAGAACGGATACAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
2258 4461 2.774687 ACAAGAACGGATACAACCCAC 58.225 47.619 0.00 0.00 0.00 4.61
2259 4462 1.730064 CAAGAACGGATACAACCCACG 59.270 52.381 0.00 0.00 0.00 4.94
2260 4463 0.971386 AGAACGGATACAACCCACGT 59.029 50.000 0.00 0.00 39.74 4.49
2261 4464 1.067354 AGAACGGATACAACCCACGTC 60.067 52.381 0.00 0.00 36.69 4.34
2262 4465 0.680618 AACGGATACAACCCACGTCA 59.319 50.000 0.00 0.00 36.69 4.35
2263 4466 0.245539 ACGGATACAACCCACGTCAG 59.754 55.000 0.00 0.00 31.39 3.51
2264 4467 1.082117 CGGATACAACCCACGTCAGC 61.082 60.000 0.00 0.00 0.00 4.26
2265 4468 0.036765 GGATACAACCCACGTCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
2266 4469 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
2267 4470 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
2268 4471 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
2269 4472 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
2270 4473 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
2271 4474 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
2272 4475 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
2273 4476 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
2274 4477 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
2275 4478 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
2276 4479 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
2277 4480 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
2278 4481 0.110509 GTCAGCACACACGCATCTTG 60.111 55.000 0.00 0.00 0.00 3.02
2279 4482 0.532640 TCAGCACACACGCATCTTGT 60.533 50.000 0.00 0.00 0.00 3.16
2280 4483 1.147473 CAGCACACACGCATCTTGTA 58.853 50.000 0.00 0.00 0.00 2.41
2281 4484 1.127397 CAGCACACACGCATCTTGTAG 59.873 52.381 0.00 0.00 0.00 2.74
2282 4485 0.179215 GCACACACGCATCTTGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
2283 4486 1.147473 CACACACGCATCTTGTAGCA 58.853 50.000 0.00 0.00 0.00 3.49
2284 4487 1.136252 CACACACGCATCTTGTAGCAC 60.136 52.381 0.00 0.00 0.00 4.40
2285 4488 0.443869 CACACGCATCTTGTAGCACC 59.556 55.000 0.00 0.00 0.00 5.01
2286 4489 0.034756 ACACGCATCTTGTAGCACCA 59.965 50.000 0.00 0.00 0.00 4.17
2287 4490 0.443869 CACGCATCTTGTAGCACCAC 59.556 55.000 0.00 0.00 0.00 4.16
2288 4491 0.034756 ACGCATCTTGTAGCACCACA 59.965 50.000 0.00 0.00 0.00 4.17
2289 4492 1.339055 ACGCATCTTGTAGCACCACAT 60.339 47.619 0.00 0.00 0.00 3.21
2290 4493 1.328680 CGCATCTTGTAGCACCACATC 59.671 52.381 0.00 0.00 0.00 3.06
2291 4494 1.672881 GCATCTTGTAGCACCACATCC 59.327 52.381 0.00 0.00 0.00 3.51
2292 4495 2.940971 GCATCTTGTAGCACCACATCCA 60.941 50.000 0.00 0.00 0.00 3.41
2293 4496 3.346315 CATCTTGTAGCACCACATCCAA 58.654 45.455 0.00 0.00 0.00 3.53
2294 4497 3.719268 TCTTGTAGCACCACATCCAAT 57.281 42.857 0.00 0.00 0.00 3.16
2295 4498 3.346315 TCTTGTAGCACCACATCCAATG 58.654 45.455 0.00 0.00 0.00 2.82
2296 4499 2.127271 TGTAGCACCACATCCAATGG 57.873 50.000 0.00 0.00 43.43 3.16
2297 4500 0.740737 GTAGCACCACATCCAATGGC 59.259 55.000 0.00 0.00 41.31 4.40
2298 4501 0.625316 TAGCACCACATCCAATGGCT 59.375 50.000 0.00 0.00 41.31 4.75
2299 4502 0.625316 AGCACCACATCCAATGGCTA 59.375 50.000 0.00 0.00 41.31 3.93
2300 4503 1.216175 AGCACCACATCCAATGGCTAT 59.784 47.619 0.00 0.00 41.31 2.97
2301 4504 2.442878 AGCACCACATCCAATGGCTATA 59.557 45.455 0.00 0.00 41.31 1.31
2302 4505 3.117550 AGCACCACATCCAATGGCTATAA 60.118 43.478 0.00 0.00 41.31 0.98
2303 4506 3.636300 GCACCACATCCAATGGCTATAAA 59.364 43.478 0.00 0.00 41.31 1.40
2304 4507 4.099266 GCACCACATCCAATGGCTATAAAA 59.901 41.667 0.00 0.00 41.31 1.52
2305 4508 5.737063 GCACCACATCCAATGGCTATAAAAG 60.737 44.000 0.00 0.00 41.31 2.27
2306 4509 4.895297 ACCACATCCAATGGCTATAAAAGG 59.105 41.667 0.00 0.00 41.31 3.11
2307 4510 4.895297 CCACATCCAATGGCTATAAAAGGT 59.105 41.667 0.00 0.00 33.60 3.50
2308 4511 5.221303 CCACATCCAATGGCTATAAAAGGTG 60.221 44.000 0.00 0.00 33.60 4.00
2309 4512 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
2310 4513 5.829924 ACATCCAATGGCTATAAAAGGTGAG 59.170 40.000 0.00 0.00 33.60 3.51
2311 4514 5.450818 TCCAATGGCTATAAAAGGTGAGT 57.549 39.130 0.00 0.00 0.00 3.41
2312 4515 5.192927 TCCAATGGCTATAAAAGGTGAGTG 58.807 41.667 0.00 0.00 0.00 3.51
2313 4516 5.045213 TCCAATGGCTATAAAAGGTGAGTGA 60.045 40.000 0.00 0.00 0.00 3.41
2314 4517 5.297776 CCAATGGCTATAAAAGGTGAGTGAG 59.702 44.000 0.00 0.00 0.00 3.51
2315 4518 5.957771 ATGGCTATAAAAGGTGAGTGAGA 57.042 39.130 0.00 0.00 0.00 3.27
2316 4519 5.086104 TGGCTATAAAAGGTGAGTGAGAC 57.914 43.478 0.00 0.00 0.00 3.36
2317 4520 4.081087 TGGCTATAAAAGGTGAGTGAGACC 60.081 45.833 0.00 0.00 0.00 3.85
2318 4521 4.081087 GGCTATAAAAGGTGAGTGAGACCA 60.081 45.833 0.00 0.00 35.76 4.02
2319 4522 5.488341 GCTATAAAAGGTGAGTGAGACCAA 58.512 41.667 0.00 0.00 35.76 3.67
2320 4523 5.938125 GCTATAAAAGGTGAGTGAGACCAAA 59.062 40.000 0.00 0.00 35.76 3.28
2321 4524 6.599638 GCTATAAAAGGTGAGTGAGACCAAAT 59.400 38.462 0.00 0.00 35.76 2.32
2322 4525 7.121315 GCTATAAAAGGTGAGTGAGACCAAATT 59.879 37.037 0.00 0.00 35.76 1.82
2323 4526 9.667107 CTATAAAAGGTGAGTGAGACCAAATTA 57.333 33.333 0.00 0.00 35.76 1.40
2324 4527 8.934023 ATAAAAGGTGAGTGAGACCAAATTAA 57.066 30.769 0.00 0.00 35.76 1.40
2325 4528 7.654022 AAAAGGTGAGTGAGACCAAATTAAA 57.346 32.000 0.00 0.00 35.76 1.52
2326 4529 7.839680 AAAGGTGAGTGAGACCAAATTAAAT 57.160 32.000 0.00 0.00 35.76 1.40
2327 4530 7.454260 AAGGTGAGTGAGACCAAATTAAATC 57.546 36.000 0.00 0.00 35.76 2.17
2328 4531 6.784031 AGGTGAGTGAGACCAAATTAAATCT 58.216 36.000 0.00 0.00 35.76 2.40
2329 4532 6.881602 AGGTGAGTGAGACCAAATTAAATCTC 59.118 38.462 0.00 6.03 38.46 2.75
2330 4533 6.655003 GGTGAGTGAGACCAAATTAAATCTCA 59.345 38.462 10.05 10.05 44.05 3.27
2331 4534 7.337942 GGTGAGTGAGACCAAATTAAATCTCAT 59.662 37.037 14.90 7.54 46.80 2.90
2332 4535 8.394121 GTGAGTGAGACCAAATTAAATCTCATC 58.606 37.037 14.90 13.40 46.80 2.92
2333 4536 8.324306 TGAGTGAGACCAAATTAAATCTCATCT 58.676 33.333 14.90 13.51 46.80 2.90
2334 4537 9.823647 GAGTGAGACCAAATTAAATCTCATCTA 57.176 33.333 14.90 0.00 46.80 1.98
2335 4538 9.829507 AGTGAGACCAAATTAAATCTCATCTAG 57.170 33.333 14.90 0.00 46.80 2.43
2336 4539 9.823647 GTGAGACCAAATTAAATCTCATCTAGA 57.176 33.333 14.90 0.00 46.80 2.43
2391 4594 6.287107 TCAGTTTTCAGTTCAGACGATTTC 57.713 37.500 0.00 0.00 0.00 2.17
2392 4595 5.815222 TCAGTTTTCAGTTCAGACGATTTCA 59.185 36.000 0.00 0.00 0.00 2.69
2404 4607 5.468746 TCAGACGATTTCAAAAAGTGGTAGG 59.531 40.000 0.00 0.00 0.00 3.18
2405 4608 4.215613 AGACGATTTCAAAAAGTGGTAGGC 59.784 41.667 0.00 0.00 0.00 3.93
2406 4609 3.886505 ACGATTTCAAAAAGTGGTAGGCA 59.113 39.130 0.00 0.00 0.00 4.75
2407 4610 4.226761 CGATTTCAAAAAGTGGTAGGCAC 58.773 43.478 0.00 0.00 0.00 5.01
2423 4626 0.798771 GCACGCACGTTCCTCTCTAG 60.799 60.000 0.00 0.00 0.00 2.43
2460 4663 1.076777 CCGCCTGGTCAATGGGATT 60.077 57.895 0.00 0.00 0.00 3.01
2461 4664 1.386525 CCGCCTGGTCAATGGGATTG 61.387 60.000 0.00 0.00 41.57 2.67
2481 4687 7.065683 GGGATTGAAAAACACAGTGATTTTGTT 59.934 33.333 22.33 9.49 33.44 2.83
2482 4688 7.904461 GGATTGAAAAACACAGTGATTTTGTTG 59.096 33.333 22.33 0.00 33.44 3.33
2487 4693 9.824534 GAAAAACACAGTGATTTTGTTGATTTT 57.175 25.926 22.33 5.96 33.44 1.82
2492 4698 8.603181 ACACAGTGATTTTGTTGATTTTAAAGC 58.397 29.630 7.81 0.00 0.00 3.51
2530 4736 3.130340 TCGCTTTCCCCAGCAAATTTATC 59.870 43.478 0.00 0.00 40.09 1.75
2560 6162 9.118236 GAAATTGTACTTATCAAACTTGTGCTC 57.882 33.333 0.00 0.00 0.00 4.26
2604 6209 7.657354 CCAGCATGTTGAATATTACTACTAGCA 59.343 37.037 11.60 0.00 0.00 3.49
2710 6315 2.557869 ACCCCATGCTTTGACTACCTA 58.442 47.619 0.00 0.00 0.00 3.08
2712 6317 2.421529 CCCCATGCTTTGACTACCTACC 60.422 54.545 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.311735 AGTGTGTATTTTCCTTACAATGGGT 58.688 36.000 0.00 0.00 31.72 4.51
1 2 6.659242 AGAGTGTGTATTTTCCTTACAATGGG 59.341 38.462 0.00 0.00 31.72 4.00
2 3 7.687941 AGAGTGTGTATTTTCCTTACAATGG 57.312 36.000 0.00 0.00 31.72 3.16
30 31 9.910267 GTGGGGATTTTTATTTACTCTTACCTA 57.090 33.333 0.00 0.00 0.00 3.08
31 32 8.395605 TGTGGGGATTTTTATTTACTCTTACCT 58.604 33.333 0.00 0.00 0.00 3.08
32 33 8.464404 GTGTGGGGATTTTTATTTACTCTTACC 58.536 37.037 0.00 0.00 0.00 2.85
33 34 8.464404 GGTGTGGGGATTTTTATTTACTCTTAC 58.536 37.037 0.00 0.00 0.00 2.34
34 35 8.395605 AGGTGTGGGGATTTTTATTTACTCTTA 58.604 33.333 0.00 0.00 0.00 2.10
35 36 7.246027 AGGTGTGGGGATTTTTATTTACTCTT 58.754 34.615 0.00 0.00 0.00 2.85
36 37 6.800890 AGGTGTGGGGATTTTTATTTACTCT 58.199 36.000 0.00 0.00 0.00 3.24
37 38 6.183360 CGAGGTGTGGGGATTTTTATTTACTC 60.183 42.308 0.00 0.00 0.00 2.59
38 39 5.650703 CGAGGTGTGGGGATTTTTATTTACT 59.349 40.000 0.00 0.00 0.00 2.24
39 40 5.648960 TCGAGGTGTGGGGATTTTTATTTAC 59.351 40.000 0.00 0.00 0.00 2.01
40 41 5.817784 TCGAGGTGTGGGGATTTTTATTTA 58.182 37.500 0.00 0.00 0.00 1.40
41 42 4.668636 TCGAGGTGTGGGGATTTTTATTT 58.331 39.130 0.00 0.00 0.00 1.40
42 43 4.270008 CTCGAGGTGTGGGGATTTTTATT 58.730 43.478 3.91 0.00 0.00 1.40
43 44 3.886123 CTCGAGGTGTGGGGATTTTTAT 58.114 45.455 3.91 0.00 0.00 1.40
44 45 2.617021 GCTCGAGGTGTGGGGATTTTTA 60.617 50.000 15.58 0.00 0.00 1.52
45 46 1.886655 GCTCGAGGTGTGGGGATTTTT 60.887 52.381 15.58 0.00 0.00 1.94
53 54 4.087892 CCCAGGCTCGAGGTGTGG 62.088 72.222 15.58 6.20 0.00 4.17
87 88 4.410400 GTCAGGGCCGGAGTTGGG 62.410 72.222 5.05 0.00 0.00 4.12
88 89 4.760047 CGTCAGGGCCGGAGTTGG 62.760 72.222 5.05 0.00 0.00 3.77
147 148 4.720902 CCTCACCATGTGGCGCCA 62.721 66.667 29.03 29.03 39.32 5.69
151 152 1.451028 GCTCTCCTCACCATGTGGC 60.451 63.158 0.00 0.00 39.32 5.01
152 153 0.545171 ATGCTCTCCTCACCATGTGG 59.455 55.000 0.00 0.00 42.17 4.17
154 155 0.545171 CCATGCTCTCCTCACCATGT 59.455 55.000 0.00 0.00 34.69 3.21
155 156 0.545171 ACCATGCTCTCCTCACCATG 59.455 55.000 0.00 0.00 35.90 3.66
156 157 0.545171 CACCATGCTCTCCTCACCAT 59.455 55.000 0.00 0.00 0.00 3.55
163 165 0.179702 TCTCATGCACCATGCTCTCC 59.820 55.000 2.02 0.00 45.31 3.71
167 169 2.658807 ATGATCTCATGCACCATGCT 57.341 45.000 2.02 0.00 45.31 3.79
168 170 3.181479 ACAAATGATCTCATGCACCATGC 60.181 43.478 0.00 0.00 45.29 4.06
174 176 7.052248 AGAGTATTCACAAATGATCTCATGCA 58.948 34.615 0.00 0.00 36.56 3.96
179 181 5.176590 GGCGAGAGTATTCACAAATGATCTC 59.823 44.000 0.00 0.00 35.98 2.75
182 184 4.769688 TGGCGAGAGTATTCACAAATGAT 58.230 39.130 0.00 0.00 33.85 2.45
183 185 4.200838 TGGCGAGAGTATTCACAAATGA 57.799 40.909 0.00 0.00 0.00 2.57
197 199 2.487762 GGATGTGTTTTGAATGGCGAGA 59.512 45.455 0.00 0.00 0.00 4.04
198 200 2.489329 AGGATGTGTTTTGAATGGCGAG 59.511 45.455 0.00 0.00 0.00 5.03
199 201 2.513753 AGGATGTGTTTTGAATGGCGA 58.486 42.857 0.00 0.00 0.00 5.54
201 203 5.296531 ACAAAAAGGATGTGTTTTGAATGGC 59.703 36.000 14.01 0.00 0.00 4.40
203 205 7.492020 TCTGACAAAAAGGATGTGTTTTGAATG 59.508 33.333 14.01 5.24 0.00 2.67
204 206 7.555087 TCTGACAAAAAGGATGTGTTTTGAAT 58.445 30.769 14.01 0.00 0.00 2.57
212 219 8.422973 TTTTGATTTCTGACAAAAAGGATGTG 57.577 30.769 0.00 0.00 41.08 3.21
231 245 7.714813 CCTGGTTGGAGTAAACAAAATTTTGAT 59.285 33.333 32.20 20.86 35.08 2.57
238 252 4.096682 CGAACCTGGTTGGAGTAAACAAAA 59.903 41.667 18.42 0.00 35.08 2.44
242 256 2.148768 CCGAACCTGGTTGGAGTAAAC 58.851 52.381 21.35 2.20 39.71 2.01
244 258 0.035739 GCCGAACCTGGTTGGAGTAA 59.964 55.000 21.35 0.00 39.71 2.24
247 261 0.323629 TTAGCCGAACCTGGTTGGAG 59.676 55.000 21.35 12.85 39.71 3.86
254 268 5.584649 TGTCAATATTCTTTAGCCGAACCTG 59.415 40.000 0.00 0.00 0.00 4.00
256 270 5.220796 GGTGTCAATATTCTTTAGCCGAACC 60.221 44.000 0.00 0.00 0.00 3.62
262 276 9.516314 GTATTTTGGGTGTCAATATTCTTTAGC 57.484 33.333 0.00 0.00 34.98 3.09
263 277 9.716507 CGTATTTTGGGTGTCAATATTCTTTAG 57.283 33.333 0.00 0.00 34.98 1.85
267 281 6.419791 TCCGTATTTTGGGTGTCAATATTCT 58.580 36.000 0.00 0.00 34.98 2.40
268 282 6.687081 TCCGTATTTTGGGTGTCAATATTC 57.313 37.500 0.00 0.00 34.98 1.75
269 283 7.654022 ATTCCGTATTTTGGGTGTCAATATT 57.346 32.000 0.00 0.00 34.98 1.28
270 284 8.215050 TCTATTCCGTATTTTGGGTGTCAATAT 58.785 33.333 0.00 0.00 34.98 1.28
271 285 7.566569 TCTATTCCGTATTTTGGGTGTCAATA 58.433 34.615 0.00 0.00 34.98 1.90
272 286 6.419791 TCTATTCCGTATTTTGGGTGTCAAT 58.580 36.000 0.00 0.00 34.98 2.57
273 287 5.806818 TCTATTCCGTATTTTGGGTGTCAA 58.193 37.500 0.00 0.00 0.00 3.18
274 288 5.423704 TCTATTCCGTATTTTGGGTGTCA 57.576 39.130 0.00 0.00 0.00 3.58
275 289 7.172703 CCTTATCTATTCCGTATTTTGGGTGTC 59.827 40.741 0.00 0.00 0.00 3.67
276 290 6.996282 CCTTATCTATTCCGTATTTTGGGTGT 59.004 38.462 0.00 0.00 0.00 4.16
277 291 6.996282 ACCTTATCTATTCCGTATTTTGGGTG 59.004 38.462 0.00 0.00 0.00 4.61
278 292 6.996282 CACCTTATCTATTCCGTATTTTGGGT 59.004 38.462 0.00 0.00 0.00 4.51
279 293 6.072673 GCACCTTATCTATTCCGTATTTTGGG 60.073 42.308 0.00 0.00 0.00 4.12
280 294 6.710744 AGCACCTTATCTATTCCGTATTTTGG 59.289 38.462 0.00 0.00 0.00 3.28
281 295 7.730364 AGCACCTTATCTATTCCGTATTTTG 57.270 36.000 0.00 0.00 0.00 2.44
282 296 9.841295 TTTAGCACCTTATCTATTCCGTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
283 297 9.490379 CTTTAGCACCTTATCTATTCCGTATTT 57.510 33.333 0.00 0.00 0.00 1.40
284 298 8.867097 TCTTTAGCACCTTATCTATTCCGTATT 58.133 33.333 0.00 0.00 0.00 1.89
285 299 8.418597 TCTTTAGCACCTTATCTATTCCGTAT 57.581 34.615 0.00 0.00 0.00 3.06
286 300 7.828508 TCTTTAGCACCTTATCTATTCCGTA 57.171 36.000 0.00 0.00 0.00 4.02
287 301 6.726490 TCTTTAGCACCTTATCTATTCCGT 57.274 37.500 0.00 0.00 0.00 4.69
295 309 9.088512 CGTGGAATATATCTTTAGCACCTTATC 57.911 37.037 0.00 0.00 0.00 1.75
296 310 8.812972 TCGTGGAATATATCTTTAGCACCTTAT 58.187 33.333 0.00 0.00 0.00 1.73
297 311 8.185506 TCGTGGAATATATCTTTAGCACCTTA 57.814 34.615 0.00 0.00 0.00 2.69
298 312 7.062749 TCGTGGAATATATCTTTAGCACCTT 57.937 36.000 0.00 0.00 0.00 3.50
299 313 6.665992 TCGTGGAATATATCTTTAGCACCT 57.334 37.500 0.00 0.00 0.00 4.00
300 314 6.183360 GCATCGTGGAATATATCTTTAGCACC 60.183 42.308 0.00 0.00 0.00 5.01
301 315 6.368791 TGCATCGTGGAATATATCTTTAGCAC 59.631 38.462 0.00 0.00 0.00 4.40
302 316 6.463360 TGCATCGTGGAATATATCTTTAGCA 58.537 36.000 0.00 0.00 0.00 3.49
303 317 6.968131 TGCATCGTGGAATATATCTTTAGC 57.032 37.500 0.00 0.00 0.00 3.09
304 318 8.939201 AGATGCATCGTGGAATATATCTTTAG 57.061 34.615 20.67 0.00 0.00 1.85
306 320 9.155975 GTTAGATGCATCGTGGAATATATCTTT 57.844 33.333 20.67 0.33 0.00 2.52
307 321 8.314021 TGTTAGATGCATCGTGGAATATATCTT 58.686 33.333 20.67 0.98 0.00 2.40
308 322 7.840931 TGTTAGATGCATCGTGGAATATATCT 58.159 34.615 20.67 1.97 0.00 1.98
309 323 8.479313 TTGTTAGATGCATCGTGGAATATATC 57.521 34.615 20.67 5.48 0.00 1.63
311 325 9.586435 CTATTGTTAGATGCATCGTGGAATATA 57.414 33.333 20.67 12.10 0.00 0.86
312 326 8.097038 ACTATTGTTAGATGCATCGTGGAATAT 58.903 33.333 20.67 11.66 0.00 1.28
313 327 7.384932 CACTATTGTTAGATGCATCGTGGAATA 59.615 37.037 20.67 18.09 0.00 1.75
314 328 6.203530 CACTATTGTTAGATGCATCGTGGAAT 59.796 38.462 20.67 17.96 0.00 3.01
320 334 6.576313 GCAAATCACTATTGTTAGATGCATCG 59.424 38.462 20.67 6.72 0.00 3.84
337 351 6.843069 AAACAACAACCAATAGCAAATCAC 57.157 33.333 0.00 0.00 0.00 3.06
350 364 7.644490 ACCAAAGAAAAAGAAAAACAACAACC 58.356 30.769 0.00 0.00 0.00 3.77
360 374 8.368668 TGACCAAGTTTACCAAAGAAAAAGAAA 58.631 29.630 0.00 0.00 0.00 2.52
361 375 7.897864 TGACCAAGTTTACCAAAGAAAAAGAA 58.102 30.769 0.00 0.00 0.00 2.52
363 377 7.488150 GTCTGACCAAGTTTACCAAAGAAAAAG 59.512 37.037 0.00 0.00 0.00 2.27
372 386 3.547054 AACGTCTGACCAAGTTTACCA 57.453 42.857 1.55 0.00 0.00 3.25
387 401 3.976306 CCCGGTTCAAATTTTGTAACGTC 59.024 43.478 20.08 7.53 39.14 4.34
390 404 4.934515 TGTCCCGGTTCAAATTTTGTAAC 58.065 39.130 8.89 10.94 0.00 2.50
398 412 7.712204 ATATTAGTTTTGTCCCGGTTCAAAT 57.288 32.000 17.67 9.67 34.30 2.32
443 457 5.632118 TGGCGAGAATTACTACTCCTCTAT 58.368 41.667 0.00 0.00 0.00 1.98
444 458 5.045012 TGGCGAGAATTACTACTCCTCTA 57.955 43.478 0.00 0.00 0.00 2.43
445 459 3.886505 CTGGCGAGAATTACTACTCCTCT 59.113 47.826 0.00 0.00 0.00 3.69
446 460 3.633065 ACTGGCGAGAATTACTACTCCTC 59.367 47.826 1.44 0.00 0.00 3.71
447 461 3.633418 ACTGGCGAGAATTACTACTCCT 58.367 45.455 1.44 0.00 0.00 3.69
448 462 4.113354 CAACTGGCGAGAATTACTACTCC 58.887 47.826 1.44 0.00 0.00 3.85
457 471 0.674895 GCTCCACAACTGGCGAGAAT 60.675 55.000 1.44 0.00 37.49 2.40
463 477 4.981806 TTATAAATGCTCCACAACTGGC 57.018 40.909 0.00 0.00 37.49 4.85
464 478 6.092748 GTGTTTATAAATGCTCCACAACTGG 58.907 40.000 0.31 0.00 39.23 4.00
465 479 6.676950 TGTGTTTATAAATGCTCCACAACTG 58.323 36.000 13.31 0.00 0.00 3.16
466 480 6.892658 TGTGTTTATAAATGCTCCACAACT 57.107 33.333 13.31 0.00 0.00 3.16
467 481 7.367285 TCTTGTGTTTATAAATGCTCCACAAC 58.633 34.615 19.46 0.25 36.67 3.32
468 482 7.230510 ACTCTTGTGTTTATAAATGCTCCACAA 59.769 33.333 20.93 20.93 38.56 3.33
469 483 6.714810 ACTCTTGTGTTTATAAATGCTCCACA 59.285 34.615 12.20 12.20 0.00 4.17
470 484 7.145932 ACTCTTGTGTTTATAAATGCTCCAC 57.854 36.000 0.31 5.24 0.00 4.02
471 485 7.759489 AACTCTTGTGTTTATAAATGCTCCA 57.241 32.000 0.31 0.00 0.00 3.86
474 488 9.988350 CGAATAACTCTTGTGTTTATAAATGCT 57.012 29.630 0.31 0.00 0.00 3.79
475 489 9.221775 CCGAATAACTCTTGTGTTTATAAATGC 57.778 33.333 0.31 0.00 0.00 3.56
476 490 9.716507 CCCGAATAACTCTTGTGTTTATAAATG 57.283 33.333 0.31 0.00 0.00 2.32
477 491 8.899771 CCCCGAATAACTCTTGTGTTTATAAAT 58.100 33.333 0.31 0.00 0.00 1.40
478 492 8.102047 TCCCCGAATAACTCTTGTGTTTATAAA 58.898 33.333 0.00 0.00 0.00 1.40
479 493 7.622713 TCCCCGAATAACTCTTGTGTTTATAA 58.377 34.615 0.00 0.00 0.00 0.98
480 494 7.185318 TCCCCGAATAACTCTTGTGTTTATA 57.815 36.000 0.00 0.00 0.00 0.98
481 495 6.057321 TCCCCGAATAACTCTTGTGTTTAT 57.943 37.500 0.00 0.00 0.00 1.40
482 496 5.486735 TCCCCGAATAACTCTTGTGTTTA 57.513 39.130 0.00 0.00 0.00 2.01
483 497 4.360951 TCCCCGAATAACTCTTGTGTTT 57.639 40.909 0.00 0.00 0.00 2.83
484 498 4.360951 TTCCCCGAATAACTCTTGTGTT 57.639 40.909 0.00 0.00 0.00 3.32
485 499 4.225267 AGATTCCCCGAATAACTCTTGTGT 59.775 41.667 0.00 0.00 31.89 3.72
486 500 4.770795 AGATTCCCCGAATAACTCTTGTG 58.229 43.478 0.00 0.00 31.89 3.33
487 501 4.141688 GGAGATTCCCCGAATAACTCTTGT 60.142 45.833 0.00 0.00 31.89 3.16
488 502 4.101741 AGGAGATTCCCCGAATAACTCTTG 59.898 45.833 0.00 0.00 37.19 3.02
489 503 4.299485 AGGAGATTCCCCGAATAACTCTT 58.701 43.478 0.00 0.00 37.19 2.85
490 504 3.930035 AGGAGATTCCCCGAATAACTCT 58.070 45.455 0.00 0.00 37.19 3.24
491 505 4.345547 AGAAGGAGATTCCCCGAATAACTC 59.654 45.833 0.00 0.00 37.19 3.01
492 506 4.299485 AGAAGGAGATTCCCCGAATAACT 58.701 43.478 0.00 0.00 37.19 2.24
493 507 4.691326 AGAAGGAGATTCCCCGAATAAC 57.309 45.455 0.00 0.00 37.19 1.89
494 508 5.710409 AAAGAAGGAGATTCCCCGAATAA 57.290 39.130 0.00 0.00 37.19 1.40
495 509 5.437060 CAAAAGAAGGAGATTCCCCGAATA 58.563 41.667 0.00 0.00 37.19 1.75
496 510 4.273318 CAAAAGAAGGAGATTCCCCGAAT 58.727 43.478 0.00 0.00 37.19 3.34
497 511 3.686016 CAAAAGAAGGAGATTCCCCGAA 58.314 45.455 0.00 0.00 37.19 4.30
498 512 2.618045 GCAAAAGAAGGAGATTCCCCGA 60.618 50.000 0.00 0.00 37.19 5.14
499 513 1.745653 GCAAAAGAAGGAGATTCCCCG 59.254 52.381 0.00 0.00 37.19 5.73
500 514 2.807676 TGCAAAAGAAGGAGATTCCCC 58.192 47.619 0.00 0.00 37.19 4.81
501 515 4.871933 TTTGCAAAAGAAGGAGATTCCC 57.128 40.909 10.02 0.00 37.19 3.97
602 850 6.367969 GTCGTCACATGTAAACTTATGAACCT 59.632 38.462 0.00 0.00 0.00 3.50
603 851 6.367969 AGTCGTCACATGTAAACTTATGAACC 59.632 38.462 0.00 0.00 0.00 3.62
604 852 7.328737 AGAGTCGTCACATGTAAACTTATGAAC 59.671 37.037 0.00 0.00 0.00 3.18
606 854 6.920817 AGAGTCGTCACATGTAAACTTATGA 58.079 36.000 0.00 0.00 0.00 2.15
639 958 2.872038 GCAGTTCTACCAACTGGACTGG 60.872 54.545 14.67 0.00 45.72 4.00
640 959 2.417719 GCAGTTCTACCAACTGGACTG 58.582 52.381 14.67 6.83 45.72 3.51
641 960 1.348036 GGCAGTTCTACCAACTGGACT 59.652 52.381 14.67 0.00 45.72 3.85
642 961 1.610886 GGGCAGTTCTACCAACTGGAC 60.611 57.143 14.67 1.28 45.72 4.02
665 987 1.676635 TGACAATGCTCTGCAGGCC 60.677 57.895 15.13 5.71 43.65 5.19
685 1007 4.409218 GGGCGCGCCATATGCATG 62.409 66.667 46.88 0.00 41.33 4.06
686 1008 4.953010 TGGGCGCGCCATATGCAT 62.953 61.111 46.88 3.79 41.33 3.96
716 1042 5.295292 CAGAGCATATGTAACCTCTTGTTGG 59.705 44.000 4.29 0.00 37.83 3.77
793 1175 0.868406 GAAGGAGTCAACCAACGCTG 59.132 55.000 0.00 0.00 0.00 5.18
797 1187 5.237779 TGATAAAACGAAGGAGTCAACCAAC 59.762 40.000 0.00 0.00 0.00 3.77
798 1188 5.237779 GTGATAAAACGAAGGAGTCAACCAA 59.762 40.000 0.00 0.00 0.00 3.67
799 1189 4.753107 GTGATAAAACGAAGGAGTCAACCA 59.247 41.667 0.00 0.00 0.00 3.67
800 1190 4.153655 GGTGATAAAACGAAGGAGTCAACC 59.846 45.833 0.00 0.00 0.00 3.77
801 1191 4.995487 AGGTGATAAAACGAAGGAGTCAAC 59.005 41.667 0.00 0.00 0.00 3.18
802 1192 5.223449 AGGTGATAAAACGAAGGAGTCAA 57.777 39.130 0.00 0.00 0.00 3.18
815 1233 1.271108 TGGCTGTTGCGAGGTGATAAA 60.271 47.619 0.00 0.00 40.82 1.40
832 1250 3.047280 TGGACGTGCGATGTTGGC 61.047 61.111 1.60 0.00 0.00 4.52
952 1390 3.243367 CGGACTCTGGATTCTGATGAGAC 60.243 52.174 0.00 0.00 0.00 3.36
1182 1675 3.764466 CCTTCTCCGGCGACTGCT 61.764 66.667 9.30 0.00 42.25 4.24
1185 1678 2.756283 CCTCCTTCTCCGGCGACT 60.756 66.667 9.30 0.00 0.00 4.18
1205 1698 1.922447 TCACCTTGGTTATCCTGGCAT 59.078 47.619 0.00 0.00 33.68 4.40
1372 1942 3.988517 GGTCGATCGATTGGTTAATCTCC 59.011 47.826 22.50 9.10 40.43 3.71
1542 2118 1.888436 CGGGCTGCCTCTGTTCTGTA 61.888 60.000 19.68 0.00 0.00 2.74
1586 2174 4.452733 GGTGCCGGTCCTTCTCCG 62.453 72.222 1.90 0.00 46.49 4.63
1753 2372 0.914551 CCTCTCGCGAAATGTACACG 59.085 55.000 11.33 0.00 0.00 4.49
1829 2454 0.378962 TTTTTCACGCACGTTCAGGG 59.621 50.000 0.00 0.00 0.00 4.45
1848 2482 1.942586 GCCGGTGGACGTATTTTCAGT 60.943 52.381 1.90 0.00 42.24 3.41
1859 2493 4.083862 GGACAGAGGCCGGTGGAC 62.084 72.222 1.90 5.59 0.00 4.02
1872 2506 2.577059 GATTCAGACGGCGGGACA 59.423 61.111 13.24 0.00 0.00 4.02
1873 2507 2.202892 GGATTCAGACGGCGGGAC 60.203 66.667 13.24 1.98 0.00 4.46
1877 2513 0.515564 AAAAACGGATTCAGACGGCG 59.484 50.000 4.80 4.80 0.00 6.46
1908 2544 4.465512 CGAGCAACGCATGGTGCC 62.466 66.667 0.99 0.00 41.12 5.01
2007 4191 1.153647 TGACCAGGAATAGCGCGTG 60.154 57.895 8.43 0.00 0.00 5.34
2008 4192 1.153628 GTGACCAGGAATAGCGCGT 60.154 57.895 8.43 0.00 0.00 6.01
2009 4193 2.230940 CGTGACCAGGAATAGCGCG 61.231 63.158 0.00 0.00 0.00 6.86
2032 4216 1.071299 AATGAGCACACACTCGGCA 59.929 52.632 0.00 0.00 39.68 5.69
2037 4221 2.878406 GGTAACACAATGAGCACACACT 59.122 45.455 0.00 0.00 0.00 3.55
2038 4222 2.878406 AGGTAACACAATGAGCACACAC 59.122 45.455 0.00 0.00 41.41 3.82
2079 4263 3.149196 GACTGCCATCCTTGAAACTGAA 58.851 45.455 0.00 0.00 0.00 3.02
2096 4280 4.082408 ACATTTCTGCATCAATGTGGACTG 60.082 41.667 18.31 0.96 41.18 3.51
2173 4376 6.559429 AGTTCTAGGTACTCCCTAAGTTGAA 58.441 40.000 0.00 0.00 45.40 2.69
2174 4377 6.150034 AGTTCTAGGTACTCCCTAAGTTGA 57.850 41.667 0.00 0.00 45.40 3.18
2175 4378 5.950549 TGAGTTCTAGGTACTCCCTAAGTTG 59.049 44.000 17.72 0.00 45.40 3.16
2176 4379 6.150034 TGAGTTCTAGGTACTCCCTAAGTT 57.850 41.667 17.72 0.00 45.40 2.66
2177 4380 5.793034 TGAGTTCTAGGTACTCCCTAAGT 57.207 43.478 17.72 0.00 45.40 2.24
2178 4381 6.607019 AGATGAGTTCTAGGTACTCCCTAAG 58.393 44.000 17.72 0.00 45.40 2.18
2179 4382 6.593759 AGATGAGTTCTAGGTACTCCCTAA 57.406 41.667 17.72 5.36 45.40 2.69
2181 4384 7.475654 CATCTAGATGAGTTCTAGGTACTCCCT 60.476 44.444 25.78 16.34 44.99 4.20
2182 4385 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
2183 4386 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
2197 4400 7.285629 AGACCAAATTACGTCTCATCTAGATGA 59.714 37.037 29.17 29.17 42.99 2.92
2198 4401 7.429633 AGACCAAATTACGTCTCATCTAGATG 58.570 38.462 24.32 24.32 45.40 2.90
2199 4402 7.589958 AGACCAAATTACGTCTCATCTAGAT 57.410 36.000 0.00 0.00 34.15 1.98
2208 4411 4.935808 GGTGAATGAGACCAAATTACGTCT 59.064 41.667 6.98 6.98 42.02 4.18
2209 4412 4.935808 AGGTGAATGAGACCAAATTACGTC 59.064 41.667 0.00 0.00 35.76 4.34
2210 4413 4.695455 CAGGTGAATGAGACCAAATTACGT 59.305 41.667 0.00 0.00 35.76 3.57
2211 4414 4.094887 CCAGGTGAATGAGACCAAATTACG 59.905 45.833 0.00 0.00 35.76 3.18
2212 4415 5.253330 TCCAGGTGAATGAGACCAAATTAC 58.747 41.667 0.00 0.00 35.76 1.89
2213 4416 5.512942 TCCAGGTGAATGAGACCAAATTA 57.487 39.130 0.00 0.00 35.76 1.40
2214 4417 4.387026 TCCAGGTGAATGAGACCAAATT 57.613 40.909 0.00 0.00 35.76 1.82
2215 4418 4.387026 TTCCAGGTGAATGAGACCAAAT 57.613 40.909 0.00 0.00 35.76 2.32
2216 4419 3.874383 TTCCAGGTGAATGAGACCAAA 57.126 42.857 0.00 0.00 35.76 3.28
2217 4420 3.874383 TTTCCAGGTGAATGAGACCAA 57.126 42.857 0.00 0.00 35.76 3.67
2218 4421 3.117701 TGTTTTCCAGGTGAATGAGACCA 60.118 43.478 0.00 0.00 35.76 4.02
2219 4422 3.486383 TGTTTTCCAGGTGAATGAGACC 58.514 45.455 0.00 0.00 31.67 3.85
2220 4423 4.821805 TCTTGTTTTCCAGGTGAATGAGAC 59.178 41.667 0.00 0.00 31.67 3.36
2221 4424 5.047566 TCTTGTTTTCCAGGTGAATGAGA 57.952 39.130 0.00 0.00 31.67 3.27
2222 4425 5.523369 GTTCTTGTTTTCCAGGTGAATGAG 58.477 41.667 0.00 0.00 31.67 2.90
2223 4426 4.036262 CGTTCTTGTTTTCCAGGTGAATGA 59.964 41.667 0.00 0.00 31.67 2.57
2224 4427 4.290155 CGTTCTTGTTTTCCAGGTGAATG 58.710 43.478 0.00 0.00 31.67 2.67
2225 4428 3.317993 CCGTTCTTGTTTTCCAGGTGAAT 59.682 43.478 0.00 0.00 31.67 2.57
2226 4429 2.685897 CCGTTCTTGTTTTCCAGGTGAA 59.314 45.455 0.00 0.00 0.00 3.18
2227 4430 2.092861 TCCGTTCTTGTTTTCCAGGTGA 60.093 45.455 0.00 0.00 0.00 4.02
2228 4431 2.294074 TCCGTTCTTGTTTTCCAGGTG 58.706 47.619 0.00 0.00 0.00 4.00
2229 4432 2.721425 TCCGTTCTTGTTTTCCAGGT 57.279 45.000 0.00 0.00 0.00 4.00
2230 4433 4.069304 TGTATCCGTTCTTGTTTTCCAGG 58.931 43.478 0.00 0.00 0.00 4.45
2231 4434 5.449304 GTTGTATCCGTTCTTGTTTTCCAG 58.551 41.667 0.00 0.00 0.00 3.86
2232 4435 4.276431 GGTTGTATCCGTTCTTGTTTTCCA 59.724 41.667 0.00 0.00 0.00 3.53
2233 4436 4.320714 GGGTTGTATCCGTTCTTGTTTTCC 60.321 45.833 0.00 0.00 0.00 3.13
2234 4437 4.276431 TGGGTTGTATCCGTTCTTGTTTTC 59.724 41.667 0.00 0.00 0.00 2.29
2235 4438 4.037089 GTGGGTTGTATCCGTTCTTGTTTT 59.963 41.667 0.00 0.00 0.00 2.43
2236 4439 3.566742 GTGGGTTGTATCCGTTCTTGTTT 59.433 43.478 0.00 0.00 0.00 2.83
2237 4440 3.143728 GTGGGTTGTATCCGTTCTTGTT 58.856 45.455 0.00 0.00 0.00 2.83
2238 4441 2.774687 GTGGGTTGTATCCGTTCTTGT 58.225 47.619 0.00 0.00 0.00 3.16
2239 4442 1.730064 CGTGGGTTGTATCCGTTCTTG 59.270 52.381 0.00 0.00 0.00 3.02
2240 4443 1.345415 ACGTGGGTTGTATCCGTTCTT 59.655 47.619 0.00 0.00 0.00 2.52
2241 4444 0.971386 ACGTGGGTTGTATCCGTTCT 59.029 50.000 0.00 0.00 0.00 3.01
2242 4445 1.337074 TGACGTGGGTTGTATCCGTTC 60.337 52.381 0.00 0.00 0.00 3.95
2243 4446 0.680618 TGACGTGGGTTGTATCCGTT 59.319 50.000 0.00 0.00 0.00 4.44
2244 4447 0.245539 CTGACGTGGGTTGTATCCGT 59.754 55.000 0.00 0.00 0.00 4.69
2245 4448 1.082117 GCTGACGTGGGTTGTATCCG 61.082 60.000 0.00 0.00 0.00 4.18
2246 4449 0.036765 TGCTGACGTGGGTTGTATCC 60.037 55.000 0.00 0.00 0.00 2.59
2247 4450 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
2248 4451 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
2249 4452 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
2250 4453 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
2251 4454 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
2252 4455 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
2253 4456 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
2254 4457 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
2255 4458 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
2256 4459 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
2257 4460 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
2258 4461 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
2259 4462 0.110509 CAAGATGCGTGTGTGCTGAC 60.111 55.000 0.00 0.00 35.36 3.51
2260 4463 0.532640 ACAAGATGCGTGTGTGCTGA 60.533 50.000 0.00 0.00 35.36 4.26
2261 4464 1.127397 CTACAAGATGCGTGTGTGCTG 59.873 52.381 2.70 0.00 35.36 4.41
2262 4465 1.432514 CTACAAGATGCGTGTGTGCT 58.567 50.000 2.70 0.00 35.36 4.40
2263 4466 0.179215 GCTACAAGATGCGTGTGTGC 60.179 55.000 2.70 0.00 0.00 4.57
2264 4467 1.136252 GTGCTACAAGATGCGTGTGTG 60.136 52.381 2.70 0.00 0.00 3.82
2265 4468 1.148310 GTGCTACAAGATGCGTGTGT 58.852 50.000 0.00 0.00 0.00 3.72
2266 4469 0.443869 GGTGCTACAAGATGCGTGTG 59.556 55.000 0.00 0.00 0.00 3.82
2267 4470 0.034756 TGGTGCTACAAGATGCGTGT 59.965 50.000 0.00 0.00 0.00 4.49
2268 4471 0.443869 GTGGTGCTACAAGATGCGTG 59.556 55.000 0.00 0.00 0.00 5.34
2269 4472 0.034756 TGTGGTGCTACAAGATGCGT 59.965 50.000 0.00 0.00 0.00 5.24
2270 4473 1.328680 GATGTGGTGCTACAAGATGCG 59.671 52.381 0.00 0.00 33.69 4.73
2271 4474 1.672881 GGATGTGGTGCTACAAGATGC 59.327 52.381 0.00 0.00 33.69 3.91
2272 4475 2.989909 TGGATGTGGTGCTACAAGATG 58.010 47.619 0.00 0.00 33.69 2.90
2273 4476 3.719268 TTGGATGTGGTGCTACAAGAT 57.281 42.857 0.00 0.00 33.69 2.40
2274 4477 3.346315 CATTGGATGTGGTGCTACAAGA 58.654 45.455 0.00 0.00 33.69 3.02
2275 4478 2.424601 CCATTGGATGTGGTGCTACAAG 59.575 50.000 0.00 0.00 33.69 3.16
2276 4479 2.445427 CCATTGGATGTGGTGCTACAA 58.555 47.619 0.00 0.00 33.69 2.41
2277 4480 1.954733 GCCATTGGATGTGGTGCTACA 60.955 52.381 6.95 0.00 39.01 2.74
2278 4481 0.740737 GCCATTGGATGTGGTGCTAC 59.259 55.000 6.95 0.00 39.01 3.58
2279 4482 0.625316 AGCCATTGGATGTGGTGCTA 59.375 50.000 6.95 0.00 39.01 3.49
2280 4483 0.625316 TAGCCATTGGATGTGGTGCT 59.375 50.000 6.95 0.00 39.01 4.40
2281 4484 1.696063 ATAGCCATTGGATGTGGTGC 58.304 50.000 6.95 0.00 39.01 5.01
2282 4485 5.221303 CCTTTTATAGCCATTGGATGTGGTG 60.221 44.000 6.95 0.00 39.01 4.17
2283 4486 4.895297 CCTTTTATAGCCATTGGATGTGGT 59.105 41.667 6.95 0.00 39.01 4.16
2284 4487 4.895297 ACCTTTTATAGCCATTGGATGTGG 59.105 41.667 6.95 0.00 39.80 4.17
2285 4488 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
2286 4489 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
2287 4490 5.829924 ACTCACCTTTTATAGCCATTGGATG 59.170 40.000 6.95 0.00 0.00 3.51
2288 4491 5.829924 CACTCACCTTTTATAGCCATTGGAT 59.170 40.000 6.95 1.78 0.00 3.41
2289 4492 5.045213 TCACTCACCTTTTATAGCCATTGGA 60.045 40.000 6.95 0.00 0.00 3.53
2290 4493 5.192927 TCACTCACCTTTTATAGCCATTGG 58.807 41.667 0.00 0.00 0.00 3.16
2291 4494 6.037610 GTCTCACTCACCTTTTATAGCCATTG 59.962 42.308 0.00 0.00 0.00 2.82
2292 4495 6.116126 GTCTCACTCACCTTTTATAGCCATT 58.884 40.000 0.00 0.00 0.00 3.16
2293 4496 5.396884 GGTCTCACTCACCTTTTATAGCCAT 60.397 44.000 0.00 0.00 0.00 4.40
2294 4497 4.081087 GGTCTCACTCACCTTTTATAGCCA 60.081 45.833 0.00 0.00 0.00 4.75
2295 4498 4.081087 TGGTCTCACTCACCTTTTATAGCC 60.081 45.833 0.00 0.00 34.66 3.93
2296 4499 5.086104 TGGTCTCACTCACCTTTTATAGC 57.914 43.478 0.00 0.00 34.66 2.97
2297 4500 8.567285 AATTTGGTCTCACTCACCTTTTATAG 57.433 34.615 0.00 0.00 34.66 1.31
2299 4502 8.934023 TTAATTTGGTCTCACTCACCTTTTAT 57.066 30.769 0.00 0.00 34.66 1.40
2300 4503 8.754991 TTTAATTTGGTCTCACTCACCTTTTA 57.245 30.769 0.00 0.00 34.66 1.52
2301 4504 7.654022 TTTAATTTGGTCTCACTCACCTTTT 57.346 32.000 0.00 0.00 34.66 2.27
2302 4505 7.725844 AGATTTAATTTGGTCTCACTCACCTTT 59.274 33.333 0.00 0.00 34.66 3.11
2303 4506 7.234355 AGATTTAATTTGGTCTCACTCACCTT 58.766 34.615 0.00 0.00 34.66 3.50
2304 4507 6.784031 AGATTTAATTTGGTCTCACTCACCT 58.216 36.000 0.00 0.00 34.66 4.00
2305 4508 6.655003 TGAGATTTAATTTGGTCTCACTCACC 59.345 38.462 10.50 0.00 41.40 4.02
2306 4509 7.672983 TGAGATTTAATTTGGTCTCACTCAC 57.327 36.000 10.50 0.00 41.40 3.51
2307 4510 8.324306 AGATGAGATTTAATTTGGTCTCACTCA 58.676 33.333 14.62 0.00 46.80 3.41
2308 4511 8.729805 AGATGAGATTTAATTTGGTCTCACTC 57.270 34.615 14.62 13.14 46.80 3.51
2309 4512 9.829507 CTAGATGAGATTTAATTTGGTCTCACT 57.170 33.333 14.62 14.76 46.80 3.41
2310 4513 9.823647 TCTAGATGAGATTTAATTTGGTCTCAC 57.176 33.333 14.62 10.57 46.80 3.51
2333 4536 7.441836 TGAACAGTTTTGCTAGAACTCATCTA 58.558 34.615 0.00 0.00 39.71 1.98
2334 4537 6.291377 TGAACAGTTTTGCTAGAACTCATCT 58.709 36.000 0.00 0.00 42.48 2.90
2335 4538 6.545504 TGAACAGTTTTGCTAGAACTCATC 57.454 37.500 0.00 0.00 35.26 2.92
2336 4539 6.543831 AGTTGAACAGTTTTGCTAGAACTCAT 59.456 34.615 0.00 0.00 35.26 2.90
2337 4540 5.880332 AGTTGAACAGTTTTGCTAGAACTCA 59.120 36.000 0.00 0.00 35.26 3.41
2338 4541 6.364945 AGTTGAACAGTTTTGCTAGAACTC 57.635 37.500 0.00 0.00 35.26 3.01
2339 4542 6.759497 AAGTTGAACAGTTTTGCTAGAACT 57.241 33.333 0.00 0.00 37.82 3.01
2340 4543 8.182227 ACTTAAGTTGAACAGTTTTGCTAGAAC 58.818 33.333 1.12 0.00 0.00 3.01
2341 4544 8.276252 ACTTAAGTTGAACAGTTTTGCTAGAA 57.724 30.769 1.12 0.00 0.00 2.10
2342 4545 7.859325 ACTTAAGTTGAACAGTTTTGCTAGA 57.141 32.000 1.12 0.00 0.00 2.43
2343 4546 8.911247 AAACTTAAGTTGAACAGTTTTGCTAG 57.089 30.769 21.22 0.00 36.29 3.42
2344 4547 8.516234 TGAAACTTAAGTTGAACAGTTTTGCTA 58.484 29.630 21.22 0.97 39.13 3.49
2345 4548 7.375053 TGAAACTTAAGTTGAACAGTTTTGCT 58.625 30.769 21.22 0.92 39.13 3.91
2346 4549 7.328493 ACTGAAACTTAAGTTGAACAGTTTTGC 59.672 33.333 29.41 8.27 40.76 3.68
2347 4550 8.742554 ACTGAAACTTAAGTTGAACAGTTTTG 57.257 30.769 29.41 18.02 40.76 2.44
2350 4553 9.406828 GAAAACTGAAACTTAAGTTGAACAGTT 57.593 29.630 33.35 33.35 46.29 3.16
2351 4554 8.573035 TGAAAACTGAAACTTAAGTTGAACAGT 58.427 29.630 29.41 29.41 42.86 3.55
2352 4555 8.964420 TGAAAACTGAAACTTAAGTTGAACAG 57.036 30.769 28.60 28.60 38.44 3.16
2353 4556 8.573035 ACTGAAAACTGAAACTTAAGTTGAACA 58.427 29.630 21.22 18.34 38.44 3.18
2354 4557 8.965986 ACTGAAAACTGAAACTTAAGTTGAAC 57.034 30.769 21.22 15.23 38.44 3.18
2391 4594 0.665835 TGCGTGCCTACCACTTTTTG 59.334 50.000 0.00 0.00 42.42 2.44
2392 4595 0.666374 GTGCGTGCCTACCACTTTTT 59.334 50.000 0.00 0.00 42.42 1.94
2404 4607 0.798771 CTAGAGAGGAACGTGCGTGC 60.799 60.000 0.00 0.00 0.00 5.34
2405 4608 3.314339 CTAGAGAGGAACGTGCGTG 57.686 57.895 0.00 0.00 0.00 5.34
2423 4626 2.570442 GTCTCTCTGACCGTTCATCC 57.430 55.000 0.00 0.00 39.69 3.51
2457 4660 8.655092 TCAACAAAATCACTGTGTTTTTCAATC 58.345 29.630 20.79 0.00 33.27 2.67
2458 4661 8.545229 TCAACAAAATCACTGTGTTTTTCAAT 57.455 26.923 20.79 10.84 33.27 2.57
2460 4663 8.545229 AATCAACAAAATCACTGTGTTTTTCA 57.455 26.923 20.79 10.03 33.27 2.69
2461 4664 9.824534 AAAATCAACAAAATCACTGTGTTTTTC 57.175 25.926 20.79 0.00 33.27 2.29
2467 4673 7.788846 CGCTTTAAAATCAACAAAATCACTGTG 59.211 33.333 0.17 0.17 0.00 3.66
2481 4687 1.892474 AGGCTTGGCGCTTTAAAATCA 59.108 42.857 7.64 0.00 39.13 2.57
2482 4688 2.530177 GAGGCTTGGCGCTTTAAAATC 58.470 47.619 7.64 0.00 39.13 2.17
2487 4693 2.435938 CCGAGGCTTGGCGCTTTA 60.436 61.111 8.12 0.00 39.13 1.85
2492 4698 2.813179 CGAATTCCGAGGCTTGGCG 61.813 63.158 16.55 9.88 41.76 5.69
2503 4709 0.965363 TGCTGGGGAAAGCGAATTCC 60.965 55.000 10.32 10.32 46.65 3.01
2530 4736 9.950680 ACAAGTTTGATAAGTACAATTTCTGTG 57.049 29.630 0.00 0.00 39.20 3.66
2548 6150 4.547532 AGTAGTACTCGAGCACAAGTTTG 58.452 43.478 17.86 0.00 0.00 2.93
2560 6162 3.742369 GCTGGAGCTAGTAGTAGTACTCG 59.258 52.174 13.60 9.01 40.23 4.18
2604 6209 3.433306 TTGTTGAATGGAGACCCGATT 57.567 42.857 0.00 0.00 34.29 3.34
2648 6253 4.136796 TGGAGGGAATAATCAAATCGCTG 58.863 43.478 0.00 0.00 36.61 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.