Multiple sequence alignment - TraesCS2A01G083500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G083500 chr2A 100.000 2192 0 0 1 2192 38308395 38310586 0.000000e+00 4048
1 TraesCS2A01G083500 chr2A 87.033 1257 154 8 929 2183 719541278 719540029 0.000000e+00 1410
2 TraesCS2A01G083500 chr2A 86.068 1213 144 14 973 2168 478762803 478761599 0.000000e+00 1280
3 TraesCS2A01G083500 chr2D 97.609 1422 34 0 771 2192 34987890 34989311 0.000000e+00 2438
4 TraesCS2A01G083500 chr2D 90.407 1574 143 7 625 2192 34994494 34996065 0.000000e+00 2063
5 TraesCS2A01G083500 chr2D 87.251 1255 158 2 929 2182 585477150 585475897 0.000000e+00 1430
6 TraesCS2A01G083500 chr2D 86.338 1259 163 8 929 2184 585517413 585516161 0.000000e+00 1363
7 TraesCS2A01G083500 chr2D 85.091 1214 154 19 973 2168 357701806 357700602 0.000000e+00 1214
8 TraesCS2A01G083500 chr2D 88.848 547 37 1 230 776 34985243 34985765 0.000000e+00 651
9 TraesCS2A01G083500 chr2D 90.110 182 11 3 12 190 34985070 34985247 1.690000e-56 230
10 TraesCS2A01G083500 chr2B 97.257 1422 39 0 771 2192 57664395 57665816 0.000000e+00 2410
11 TraesCS2A01G083500 chr2B 90.146 1573 149 5 625 2192 57672297 57673868 0.000000e+00 2041
12 TraesCS2A01G083500 chr2B 86.158 1257 170 4 929 2183 706418483 706417229 0.000000e+00 1354
13 TraesCS2A01G083500 chr2B 88.255 596 40 7 193 771 57655974 57656556 0.000000e+00 686
14 TraesCS2A01G083500 chr2B 93.130 131 9 0 17 147 57655827 57655957 2.220000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G083500 chr2A 38308395 38310586 2191 False 4048.000000 4048 100.0000 1 2192 1 chr2A.!!$F1 2191
1 TraesCS2A01G083500 chr2A 719540029 719541278 1249 True 1410.000000 1410 87.0330 929 2183 1 chr2A.!!$R2 1254
2 TraesCS2A01G083500 chr2A 478761599 478762803 1204 True 1280.000000 1280 86.0680 973 2168 1 chr2A.!!$R1 1195
3 TraesCS2A01G083500 chr2D 34994494 34996065 1571 False 2063.000000 2063 90.4070 625 2192 1 chr2D.!!$F1 1567
4 TraesCS2A01G083500 chr2D 585475897 585477150 1253 True 1430.000000 1430 87.2510 929 2182 1 chr2D.!!$R2 1253
5 TraesCS2A01G083500 chr2D 585516161 585517413 1252 True 1363.000000 1363 86.3380 929 2184 1 chr2D.!!$R3 1255
6 TraesCS2A01G083500 chr2D 357700602 357701806 1204 True 1214.000000 1214 85.0910 973 2168 1 chr2D.!!$R1 1195
7 TraesCS2A01G083500 chr2D 34985070 34989311 4241 False 1106.333333 2438 92.1890 12 2192 3 chr2D.!!$F2 2180
8 TraesCS2A01G083500 chr2B 57664395 57665816 1421 False 2410.000000 2410 97.2570 771 2192 1 chr2B.!!$F1 1421
9 TraesCS2A01G083500 chr2B 57672297 57673868 1571 False 2041.000000 2041 90.1460 625 2192 1 chr2B.!!$F2 1567
10 TraesCS2A01G083500 chr2B 706417229 706418483 1254 True 1354.000000 1354 86.1580 929 2183 1 chr2B.!!$R1 1254
11 TraesCS2A01G083500 chr2B 57655827 57656556 729 False 439.500000 686 90.6925 17 771 2 chr2B.!!$F3 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 623 0.108615 CCTGGTGCTCGTAGTGGAAG 60.109 60.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 3959 5.75695 CAGCAATTTCAACTGCAATAGTG 57.243 39.13 0.0 0.0 40.26 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.474313 TTTACAGAGGGAGTATTTTGCATTATT 57.526 29.630 0.00 0.00 0.00 1.40
58 59 0.390603 TTGTAGTCGGCCATGAACGG 60.391 55.000 2.24 0.00 0.00 4.44
63 64 1.079681 TCGGCCATGAACGGTGTAC 60.080 57.895 2.24 0.00 0.00 2.90
64 65 1.079405 CGGCCATGAACGGTGTACT 60.079 57.895 2.24 0.00 0.00 2.73
65 66 0.173935 CGGCCATGAACGGTGTACTA 59.826 55.000 2.24 0.00 0.00 1.82
152 153 1.133598 CTCGCCCGTGTACTTGATGTA 59.866 52.381 0.00 0.00 0.00 2.29
186 213 1.333619 CCTGGTGGAAAGACAACGTTG 59.666 52.381 26.20 26.20 34.57 4.10
187 214 0.736053 TGGTGGAAAGACAACGTTGC 59.264 50.000 27.61 19.38 0.00 4.17
188 215 0.316689 GGTGGAAAGACAACGTTGCG 60.317 55.000 27.61 6.11 0.00 4.85
189 216 0.316689 GTGGAAAGACAACGTTGCGG 60.317 55.000 27.61 5.31 0.00 5.69
190 217 0.462225 TGGAAAGACAACGTTGCGGA 60.462 50.000 27.61 2.63 0.00 5.54
191 218 0.872388 GGAAAGACAACGTTGCGGAT 59.128 50.000 27.61 12.21 0.00 4.18
192 219 1.399727 GGAAAGACAACGTTGCGGATG 60.400 52.381 27.61 4.50 0.00 3.51
193 220 1.263217 GAAAGACAACGTTGCGGATGT 59.737 47.619 27.61 8.23 34.74 3.06
194 221 0.586319 AAGACAACGTTGCGGATGTG 59.414 50.000 27.61 2.86 32.90 3.21
195 222 1.206578 GACAACGTTGCGGATGTGG 59.793 57.895 27.61 1.35 32.90 4.17
196 223 2.182614 GACAACGTTGCGGATGTGGG 62.183 60.000 27.61 0.56 32.90 4.61
197 224 1.963855 CAACGTTGCGGATGTGGGA 60.964 57.895 16.51 0.00 0.00 4.37
198 225 1.671054 AACGTTGCGGATGTGGGAG 60.671 57.895 0.00 0.00 0.00 4.30
199 226 2.047274 CGTTGCGGATGTGGGAGT 60.047 61.111 0.00 0.00 0.00 3.85
200 227 2.100631 CGTTGCGGATGTGGGAGTC 61.101 63.158 0.00 0.00 0.00 3.36
201 228 1.003839 GTTGCGGATGTGGGAGTCA 60.004 57.895 0.00 0.00 0.00 3.41
202 229 0.605319 GTTGCGGATGTGGGAGTCAA 60.605 55.000 0.00 0.00 0.00 3.18
203 230 0.109532 TTGCGGATGTGGGAGTCAAA 59.890 50.000 0.00 0.00 0.00 2.69
204 231 0.327924 TGCGGATGTGGGAGTCAAAT 59.672 50.000 0.00 0.00 0.00 2.32
205 232 0.734889 GCGGATGTGGGAGTCAAATG 59.265 55.000 0.00 0.00 0.00 2.32
206 233 0.734889 CGGATGTGGGAGTCAAATGC 59.265 55.000 0.00 0.00 0.00 3.56
207 234 1.679944 CGGATGTGGGAGTCAAATGCT 60.680 52.381 0.00 0.00 30.17 3.79
208 235 2.450476 GGATGTGGGAGTCAAATGCTT 58.550 47.619 0.00 0.00 29.81 3.91
209 236 2.827921 GGATGTGGGAGTCAAATGCTTT 59.172 45.455 0.00 0.00 29.81 3.51
210 237 3.259123 GGATGTGGGAGTCAAATGCTTTT 59.741 43.478 0.00 0.00 29.81 2.27
211 238 3.731652 TGTGGGAGTCAAATGCTTTTG 57.268 42.857 16.77 16.77 42.98 2.44
212 239 2.364970 TGTGGGAGTCAAATGCTTTTGG 59.635 45.455 21.07 6.68 42.10 3.28
213 240 1.969923 TGGGAGTCAAATGCTTTTGGG 59.030 47.619 21.07 1.44 42.10 4.12
214 241 1.338105 GGGAGTCAAATGCTTTTGGGC 60.338 52.381 21.07 15.21 42.10 5.36
215 242 1.669795 GGAGTCAAATGCTTTTGGGCG 60.670 52.381 21.07 0.48 42.10 6.13
216 243 0.319813 AGTCAAATGCTTTTGGGCGC 60.320 50.000 21.07 0.00 42.10 6.53
217 244 0.599728 GTCAAATGCTTTTGGGCGCA 60.600 50.000 21.07 0.00 42.10 6.09
219 246 0.444651 CAAATGCTTTTGGGCGCATG 59.555 50.000 10.83 0.00 45.41 4.06
220 247 1.300266 AAATGCTTTTGGGCGCATGC 61.300 50.000 10.83 7.91 45.41 4.06
221 248 2.451928 AATGCTTTTGGGCGCATGCA 62.452 50.000 19.57 21.73 45.41 3.96
228 255 3.762247 GGGCGCATGCACACCATT 61.762 61.111 19.57 0.00 46.60 3.16
229 256 2.262292 GGCGCATGCACACCATTT 59.738 55.556 19.57 0.00 45.35 2.32
230 257 1.374505 GGCGCATGCACACCATTTT 60.375 52.632 19.57 0.00 45.35 1.82
243 270 0.538118 CCATTTTCGGGGGAGTCGTA 59.462 55.000 0.00 0.00 0.00 3.43
244 271 1.648504 CATTTTCGGGGGAGTCGTAC 58.351 55.000 0.00 0.00 0.00 3.67
333 376 1.271325 TGGCCAACGTCACAATCATCT 60.271 47.619 0.61 0.00 0.00 2.90
336 379 2.744202 GCCAACGTCACAATCATCTCTT 59.256 45.455 0.00 0.00 0.00 2.85
340 383 2.196749 CGTCACAATCATCTCTTCCCG 58.803 52.381 0.00 0.00 0.00 5.14
346 389 0.179000 ATCATCTCTTCCCGTGCCAC 59.821 55.000 0.00 0.00 0.00 5.01
352 395 4.651008 TTCCCGTGCCACGACGAC 62.651 66.667 20.57 0.00 46.05 4.34
357 400 4.994201 GTGCCACGACGACGAGCA 62.994 66.667 20.24 20.24 44.43 4.26
401 444 3.667282 CGTGTCGTGGTCCGGACT 61.667 66.667 32.52 0.00 37.11 3.85
432 475 1.196808 GTTGTCACACCGTATTGCCTG 59.803 52.381 0.00 0.00 0.00 4.85
444 487 1.434513 ATTGCCTGGAGGGTGTTCCA 61.435 55.000 0.00 0.00 44.84 3.53
458 501 1.735018 TGTTCCATGCATTACGGTTCG 59.265 47.619 0.00 0.00 0.00 3.95
477 520 2.981859 GACCCAAGTCGACCATGTAT 57.018 50.000 13.01 2.12 32.18 2.29
505 548 2.183046 GGCACGAGGCTCTGAGTC 59.817 66.667 13.50 0.00 44.01 3.36
559 603 3.738745 ATGGGGAAGAATGCCGGCC 62.739 63.158 26.77 8.84 38.08 6.13
579 623 0.108615 CCTGGTGCTCGTAGTGGAAG 60.109 60.000 0.00 0.00 0.00 3.46
629 673 7.489113 ACTTGCTTTTCTTAAGACAACACAATG 59.511 33.333 4.18 7.22 0.00 2.82
659 703 5.100259 GCTCACATACACGTACATACACTT 58.900 41.667 0.00 0.00 0.00 3.16
660 704 5.575606 GCTCACATACACGTACATACACTTT 59.424 40.000 0.00 0.00 0.00 2.66
689 736 2.472488 CGCACTTTGATTGAAACTTGCC 59.528 45.455 0.00 0.00 29.03 4.52
692 739 2.061028 CTTTGATTGAAACTTGCCGGC 58.939 47.619 22.73 22.73 0.00 6.13
861 3040 6.293081 CCATGATACTCTAACAAAGAATGCCG 60.293 42.308 0.00 0.00 32.46 5.69
886 3065 7.461416 CGAAGAAGACACAAACAAAATGAACAC 60.461 37.037 0.00 0.00 0.00 3.32
1071 3250 1.138859 CTCCAGATACCATCACCGCAA 59.861 52.381 0.00 0.00 0.00 4.85
1126 3305 1.616865 CTGACTCCTTACGGTTCACCA 59.383 52.381 0.00 0.00 35.14 4.17
1161 3340 5.359194 ACAAGATGACAGTCCCGATAAAT 57.641 39.130 0.00 0.00 0.00 1.40
1233 3412 1.496429 AGGAGCGGGATGAATTTGGAT 59.504 47.619 0.00 0.00 0.00 3.41
1238 3417 2.814336 GCGGGATGAATTTGGATAGACC 59.186 50.000 0.00 0.00 39.54 3.85
1779 3959 3.953612 TGAGTTGTGGGAATATCATTGGC 59.046 43.478 0.00 0.00 0.00 4.52
2175 4370 8.406172 AGTTTTTGCTAAATATAATGTTGGCG 57.594 30.769 0.00 0.00 34.25 5.69
2184 4379 6.851222 AATATAATGTTGGCGAAGACTGAG 57.149 37.500 0.00 0.00 34.59 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.522542 TCCCTCTGTAAAGTACTTCTTAGATC 57.477 38.462 8.95 0.00 35.02 2.75
1 2 8.117312 ACTCCCTCTGTAAAGTACTTCTTAGAT 58.883 37.037 8.95 0.00 35.02 1.98
2 3 7.468496 ACTCCCTCTGTAAAGTACTTCTTAGA 58.532 38.462 8.95 11.15 35.02 2.10
3 4 7.706100 ACTCCCTCTGTAAAGTACTTCTTAG 57.294 40.000 8.95 7.50 35.02 2.18
4 5 9.765295 AATACTCCCTCTGTAAAGTACTTCTTA 57.235 33.333 8.95 0.00 35.02 2.10
5 6 8.667592 AATACTCCCTCTGTAAAGTACTTCTT 57.332 34.615 8.95 0.00 38.10 2.52
6 7 8.667592 AAATACTCCCTCTGTAAAGTACTTCT 57.332 34.615 8.95 2.28 0.00 2.85
7 8 9.152595 CAAAATACTCCCTCTGTAAAGTACTTC 57.847 37.037 8.95 0.00 0.00 3.01
8 9 7.606839 GCAAAATACTCCCTCTGTAAAGTACTT 59.393 37.037 1.12 1.12 0.00 2.24
9 10 7.104290 GCAAAATACTCCCTCTGTAAAGTACT 58.896 38.462 0.00 0.00 0.00 2.73
10 11 6.877322 TGCAAAATACTCCCTCTGTAAAGTAC 59.123 38.462 0.00 0.00 0.00 2.73
15 16 8.902806 CAATAATGCAAAATACTCCCTCTGTAA 58.097 33.333 0.00 0.00 0.00 2.41
40 41 1.216977 CCGTTCATGGCCGACTACA 59.783 57.895 0.00 0.00 0.00 2.74
152 153 1.276421 CACCAGGATTTCGAGTCACCT 59.724 52.381 0.00 0.00 0.00 4.00
186 213 0.734889 CATTTGACTCCCACATCCGC 59.265 55.000 0.00 0.00 0.00 5.54
187 214 0.734889 GCATTTGACTCCCACATCCG 59.265 55.000 0.00 0.00 0.00 4.18
188 215 2.134789 AGCATTTGACTCCCACATCC 57.865 50.000 0.00 0.00 0.00 3.51
189 216 4.525912 AAAAGCATTTGACTCCCACATC 57.474 40.909 0.00 0.00 39.02 3.06
200 227 4.357699 TGCGCCCAAAAGCATTTG 57.642 50.000 4.18 7.43 44.50 2.32
205 232 3.113979 GTGCATGCGCCCAAAAGC 61.114 61.111 20.70 0.00 37.32 3.51
206 233 2.023223 GTGTGCATGCGCCCAAAAG 61.023 57.895 27.42 0.00 37.32 2.27
207 234 2.028778 GTGTGCATGCGCCCAAAA 59.971 55.556 27.42 6.45 37.32 2.44
208 235 3.988525 GGTGTGCATGCGCCCAAA 61.989 61.111 27.42 6.85 37.32 3.28
211 238 2.784889 AAAATGGTGTGCATGCGCCC 62.785 55.000 27.42 25.36 38.20 6.13
212 239 1.353609 GAAAATGGTGTGCATGCGCC 61.354 55.000 27.42 21.13 39.37 6.53
213 240 1.676438 CGAAAATGGTGTGCATGCGC 61.676 55.000 24.25 24.25 39.24 6.09
214 241 1.072116 CCGAAAATGGTGTGCATGCG 61.072 55.000 14.09 0.00 0.00 4.73
215 242 0.737019 CCCGAAAATGGTGTGCATGC 60.737 55.000 11.82 11.82 0.00 4.06
216 243 0.108709 CCCCGAAAATGGTGTGCATG 60.109 55.000 0.00 0.00 0.00 4.06
217 244 1.257055 CCCCCGAAAATGGTGTGCAT 61.257 55.000 0.00 0.00 0.00 3.96
218 245 1.905843 CCCCCGAAAATGGTGTGCA 60.906 57.895 0.00 0.00 0.00 4.57
219 246 1.595093 CTCCCCCGAAAATGGTGTGC 61.595 60.000 0.00 0.00 0.00 4.57
220 247 0.251165 ACTCCCCCGAAAATGGTGTG 60.251 55.000 0.00 0.00 0.00 3.82
221 248 0.037734 GACTCCCCCGAAAATGGTGT 59.962 55.000 0.00 0.00 0.00 4.16
222 249 1.024579 CGACTCCCCCGAAAATGGTG 61.025 60.000 0.00 0.00 0.00 4.17
223 250 1.298667 CGACTCCCCCGAAAATGGT 59.701 57.895 0.00 0.00 0.00 3.55
224 251 0.538118 TACGACTCCCCCGAAAATGG 59.462 55.000 0.00 0.00 0.00 3.16
225 252 1.648504 GTACGACTCCCCCGAAAATG 58.351 55.000 0.00 0.00 0.00 2.32
226 253 0.174162 CGTACGACTCCCCCGAAAAT 59.826 55.000 10.44 0.00 0.00 1.82
227 254 1.586028 CGTACGACTCCCCCGAAAA 59.414 57.895 10.44 0.00 0.00 2.29
228 255 2.342650 CCGTACGACTCCCCCGAAA 61.343 63.158 18.76 0.00 0.00 3.46
229 256 2.751436 CCGTACGACTCCCCCGAA 60.751 66.667 18.76 0.00 0.00 4.30
230 257 4.033776 ACCGTACGACTCCCCCGA 62.034 66.667 18.76 0.00 0.00 5.14
243 270 2.577606 TCATCAACCATTTCCACCGT 57.422 45.000 0.00 0.00 0.00 4.83
244 271 2.480073 GCATCATCAACCATTTCCACCG 60.480 50.000 0.00 0.00 0.00 4.94
297 340 0.948678 GCCACAGTAACCTTTGCGAA 59.051 50.000 0.00 0.00 0.00 4.70
333 376 4.351938 CGTCGTGGCACGGGAAGA 62.352 66.667 36.30 16.95 42.81 2.87
340 383 4.994201 TGCTCGTCGTCGTGGCAC 62.994 66.667 7.79 7.79 39.76 5.01
346 389 2.391821 GCATTGTGCTCGTCGTCG 59.608 61.111 0.00 0.00 40.96 5.12
352 395 2.180017 GGCAAGGCATTGTGCTCG 59.820 61.111 13.30 0.00 44.28 5.03
353 396 1.509923 GAGGCAAGGCATTGTGCTC 59.490 57.895 13.30 0.84 44.28 4.26
354 397 2.338015 CGAGGCAAGGCATTGTGCT 61.338 57.895 13.30 0.00 44.28 4.40
355 398 1.660560 ATCGAGGCAAGGCATTGTGC 61.661 55.000 13.30 0.00 44.08 4.57
356 399 0.099968 CATCGAGGCAAGGCATTGTG 59.900 55.000 13.30 0.00 38.76 3.33
357 400 1.033746 CCATCGAGGCAAGGCATTGT 61.034 55.000 13.30 0.00 38.76 2.71
444 487 0.250793 TGGGTCGAACCGTAATGCAT 59.749 50.000 16.31 0.00 39.83 3.96
458 501 2.936498 CAATACATGGTCGACTTGGGTC 59.064 50.000 16.46 0.00 38.97 4.46
477 520 3.626996 CTCGTGCCCCTCATGCCAA 62.627 63.158 0.00 0.00 0.00 4.52
482 525 3.474570 GAGCCTCGTGCCCCTCAT 61.475 66.667 0.00 0.00 42.71 2.90
483 526 4.704103 AGAGCCTCGTGCCCCTCA 62.704 66.667 0.00 0.00 42.71 3.86
486 529 4.154347 CTCAGAGCCTCGTGCCCC 62.154 72.222 0.00 0.00 42.71 5.80
559 603 1.541310 TTCCACTACGAGCACCAGGG 61.541 60.000 0.00 0.00 0.00 4.45
629 673 2.483876 ACGTGTATGTGAGCATATGCC 58.516 47.619 23.96 15.47 43.38 4.40
659 703 6.552859 TTCAATCAAAGTGCGTTCATAGAA 57.447 33.333 0.00 0.00 0.00 2.10
660 704 6.204688 AGTTTCAATCAAAGTGCGTTCATAGA 59.795 34.615 0.00 0.00 0.00 1.98
689 736 1.069296 TGATGCAAAAGAAACTCGCCG 60.069 47.619 0.00 0.00 0.00 6.46
692 739 7.164171 CGGTATAAATGATGCAAAAGAAACTCG 59.836 37.037 0.00 0.00 0.00 4.18
697 744 7.624360 AGACGGTATAAATGATGCAAAAGAA 57.376 32.000 0.00 0.00 0.00 2.52
861 3040 7.328249 TGTGTTCATTTTGTTTGTGTCTTCTTC 59.672 33.333 0.00 0.00 0.00 2.87
886 3065 4.098349 ACCATGGCAATACAACAATAGCTG 59.902 41.667 13.04 0.00 0.00 4.24
1071 3250 1.000274 GCGGTTGCTTCTGGTTTGATT 60.000 47.619 0.00 0.00 38.39 2.57
1126 3305 6.065976 TGTCATCTTGTTTGTATGGGAGAT 57.934 37.500 0.00 0.00 0.00 2.75
1161 3340 3.057019 GGCATACTTCGCGATTGACATA 58.943 45.455 10.88 0.00 0.00 2.29
1213 3392 0.918983 TCCAAATTCATCCCGCTCCT 59.081 50.000 0.00 0.00 0.00 3.69
1233 3412 2.241176 GGATGTCACCCCAAATGGTCTA 59.759 50.000 0.00 0.00 36.12 2.59
1238 3417 1.037030 CCGGGATGTCACCCCAAATG 61.037 60.000 2.20 0.00 46.62 2.32
1779 3959 5.756950 CAGCAATTTCAACTGCAATAGTG 57.243 39.130 0.00 0.00 40.26 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.