Multiple sequence alignment - TraesCS2A01G083400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G083400 chr2A 100.000 3340 0 0 3503 6842 38311703 38308364 0.000000e+00 6168.0
1 TraesCS2A01G083400 chr2A 100.000 3185 0 0 1 3185 38315205 38312021 0.000000e+00 5882.0
2 TraesCS2A01G083400 chr2A 83.236 2398 330 42 3503 5883 719538936 719541278 0.000000e+00 2135.0
3 TraesCS2A01G083400 chr2A 86.068 1213 144 14 4644 5839 478761599 478762803 0.000000e+00 1280.0
4 TraesCS2A01G083400 chr2A 85.686 510 44 10 868 1349 719537301 719537809 1.700000e-140 510.0
5 TraesCS2A01G083400 chr2A 83.221 447 54 12 2203 2640 719538163 719538597 2.310000e-104 390.0
6 TraesCS2A01G083400 chr2A 91.089 202 18 0 4030 4231 478760842 478761043 2.430000e-69 274.0
7 TraesCS2A01G083400 chr2A 93.103 58 3 1 1550 1606 498099543 498099486 4.400000e-12 84.2
8 TraesCS2A01G083400 chr2B 94.792 2554 115 9 3503 6041 57666945 57664395 0.000000e+00 3964.0
9 TraesCS2A01G083400 chr2B 86.434 2698 319 29 3505 6187 57674962 57672297 0.000000e+00 2911.0
10 TraesCS2A01G083400 chr2B 82.502 2406 338 49 3503 5883 706416136 706418483 0.000000e+00 2034.0
11 TraesCS2A01G083400 chr2B 85.655 1213 149 15 4644 5839 425352247 425353451 0.000000e+00 1253.0
12 TraesCS2A01G083400 chr2B 90.722 873 77 4 2203 3072 57669391 57668520 0.000000e+00 1160.0
13 TraesCS2A01G083400 chr2B 91.454 667 35 8 870 1521 57670270 57669611 0.000000e+00 896.0
14 TraesCS2A01G083400 chr2B 84.625 787 114 7 5099 5883 705890293 705889512 0.000000e+00 776.0
15 TraesCS2A01G083400 chr2B 88.255 596 40 7 6041 6619 57656556 57655974 0.000000e+00 686.0
16 TraesCS2A01G083400 chr2B 81.335 734 98 19 2203 2928 57675963 57675261 1.670000e-155 560.0
17 TraesCS2A01G083400 chr2B 95.184 353 17 0 997 1349 57676620 57676268 5.990000e-155 558.0
18 TraesCS2A01G083400 chr2B 86.730 422 49 5 1784 2203 541626623 541627039 4.830000e-126 462.0
19 TraesCS2A01G083400 chr2B 90.735 313 15 10 558 868 10611611 10611911 8.260000e-109 405.0
20 TraesCS2A01G083400 chr2B 91.065 291 26 0 1056 1346 425349194 425349484 1.790000e-105 394.0
21 TraesCS2A01G083400 chr2B 88.379 327 38 0 1023 1349 706414746 706415072 1.790000e-105 394.0
22 TraesCS2A01G083400 chr2B 80.732 519 67 19 2203 2709 706415374 706415871 2.330000e-99 374.0
23 TraesCS2A01G083400 chr2B 89.604 202 21 0 4030 4231 425351641 425351842 2.450000e-64 257.0
24 TraesCS2A01G083400 chr2B 89.560 182 15 3 1602 1782 57669560 57669382 1.920000e-55 228.0
25 TraesCS2A01G083400 chr2B 95.935 123 5 0 383 505 242550096 242550218 4.180000e-47 200.0
26 TraesCS2A01G083400 chr2B 93.130 131 9 0 6665 6795 57655957 57655827 7.000000e-45 193.0
27 TraesCS2A01G083400 chr2B 91.538 130 11 0 3056 3185 57667138 57667009 5.450000e-41 180.0
28 TraesCS2A01G083400 chr2D 94.741 2548 106 17 3503 6041 34990418 34987890 0.000000e+00 3938.0
29 TraesCS2A01G083400 chr2D 86.620 2698 311 34 3505 6187 34997156 34994494 0.000000e+00 2937.0
30 TraesCS2A01G083400 chr2D 83.431 2396 348 30 3503 5883 585474789 585477150 0.000000e+00 2180.0
31 TraesCS2A01G083400 chr2D 83.859 1679 243 22 4218 5883 585515750 585517413 0.000000e+00 1574.0
32 TraesCS2A01G083400 chr2D 90.974 986 86 3 2203 3185 34991467 34990482 0.000000e+00 1325.0
33 TraesCS2A01G083400 chr2D 85.091 1214 154 17 4644 5839 357700602 357701806 0.000000e+00 1214.0
34 TraesCS2A01G083400 chr2D 92.019 639 39 9 938 1566 34992274 34991638 0.000000e+00 887.0
35 TraesCS2A01G083400 chr2D 88.848 547 37 1 6036 6582 34985765 34985243 0.000000e+00 651.0
36 TraesCS2A01G083400 chr2D 95.467 353 16 0 997 1349 34998807 34998455 1.290000e-156 564.0
37 TraesCS2A01G083400 chr2D 80.790 734 96 23 2203 2928 34998151 34997455 3.630000e-147 532.0
38 TraesCS2A01G083400 chr2D 85.540 491 47 12 868 1349 585473350 585473825 6.170000e-135 492.0
39 TraesCS2A01G083400 chr2D 87.368 380 42 3 967 1346 585501726 585502099 1.360000e-116 431.0
40 TraesCS2A01G083400 chr2D 84.009 444 51 11 2203 2637 585502359 585502791 6.390000e-110 409.0
41 TraesCS2A01G083400 chr2D 81.766 521 63 19 2203 2710 585474181 585474682 2.300000e-109 407.0
42 TraesCS2A01G083400 chr2D 92.973 185 8 4 1602 1782 34991641 34991458 1.460000e-66 265.0
43 TraesCS2A01G083400 chr2D 90.099 202 20 0 4030 4231 357699998 357700199 5.260000e-66 263.0
44 TraesCS2A01G083400 chr2D 86.207 232 15 5 6622 6842 34985247 34985022 1.150000e-57 235.0
45 TraesCS2A01G083400 chr2D 91.803 61 2 3 1548 1606 636385929 636385988 1.580000e-11 82.4
46 TraesCS2A01G083400 chr2D 95.745 47 1 1 1565 1611 267707165 267707120 2.650000e-09 75.0
47 TraesCS2A01G083400 chr5A 91.250 880 40 11 1 864 6167313 6166455 0.000000e+00 1164.0
48 TraesCS2A01G083400 chr5A 85.273 421 57 5 1784 2202 52850031 52850448 4.900000e-116 429.0
49 TraesCS2A01G083400 chr5B 99.525 421 0 2 1783 2202 598163626 598164045 0.000000e+00 765.0
50 TraesCS2A01G083400 chr5B 96.927 423 9 3 1783 2202 60905540 60905119 0.000000e+00 706.0
51 TraesCS2A01G083400 chr5B 93.103 145 10 0 383 527 184299692 184299548 5.380000e-51 213.0
52 TraesCS2A01G083400 chr4B 99.052 422 3 1 1783 2203 171214252 171213831 0.000000e+00 756.0
53 TraesCS2A01G083400 chr4B 88.267 375 24 7 25 386 78015932 78015565 1.360000e-116 431.0
54 TraesCS2A01G083400 chr3B 89.074 421 45 1 1783 2202 422008403 422007983 7.860000e-144 521.0
55 TraesCS2A01G083400 chr3B 88.995 418 42 4 1787 2202 828296464 828296049 1.320000e-141 514.0
56 TraesCS2A01G083400 chr4D 88.000 425 40 6 1780 2202 493928324 493927909 6.170000e-135 492.0
57 TraesCS2A01G083400 chr4D 90.426 376 21 5 24 386 53231942 53231569 1.330000e-131 481.0
58 TraesCS2A01G083400 chr4D 96.078 51 2 0 1555 1605 380252284 380252234 4.400000e-12 84.2
59 TraesCS2A01G083400 chr4D 97.959 49 0 1 1558 1606 384974280 384974327 4.400000e-12 84.2
60 TraesCS2A01G083400 chr5D 87.864 412 43 6 1797 2203 51923444 51923853 1.730000e-130 477.0
61 TraesCS2A01G083400 chr4A 88.503 374 23 5 26 386 543745894 543746260 1.050000e-117 435.0
62 TraesCS2A01G083400 chr4A 90.476 315 19 6 558 861 678417825 678418139 8.260000e-109 405.0
63 TraesCS2A01G083400 chr1B 90.820 305 15 9 558 861 29773001 29773293 4.970000e-106 396.0
64 TraesCS2A01G083400 chr1B 96.078 153 6 0 383 535 560325141 560324989 4.100000e-62 250.0
65 TraesCS2A01G083400 chr1B 97.959 49 1 0 1558 1606 188791953 188791905 1.220000e-12 86.1
66 TraesCS2A01G083400 chr6D 89.744 312 19 3 558 868 76080583 76080882 2.990000e-103 387.0
67 TraesCS2A01G083400 chr1D 90.164 305 17 3 558 861 207148883 207149175 1.080000e-102 385.0
68 TraesCS2A01G083400 chr1D 100.000 46 0 0 1561 1606 404061440 404061485 1.220000e-12 86.1
69 TraesCS2A01G083400 chr1D 100.000 42 0 0 1565 1606 114350962 114350921 2.050000e-10 78.7
70 TraesCS2A01G083400 chr3D 89.902 307 18 3 558 863 382819871 382819577 3.870000e-102 383.0
71 TraesCS2A01G083400 chr3D 89.389 311 19 4 558 867 554658556 554658259 5.010000e-101 379.0
72 TraesCS2A01G083400 chr6B 89.610 308 19 9 558 864 38067640 38067345 5.010000e-101 379.0
73 TraesCS2A01G083400 chr6B 94.483 145 8 0 383 527 91139208 91139352 2.480000e-54 224.0
74 TraesCS2A01G083400 chr6B 94.483 145 8 0 383 527 91170109 91170253 2.480000e-54 224.0
75 TraesCS2A01G083400 chr1A 89.542 306 19 3 558 862 575800634 575800341 6.480000e-100 375.0
76 TraesCS2A01G083400 chr6A 94.483 145 8 0 383 527 12372310 12372454 2.480000e-54 224.0
77 TraesCS2A01G083400 chr6A 93.333 120 8 0 383 502 97383274 97383155 1.960000e-40 178.0
78 TraesCS2A01G083400 chr7A 89.394 66 4 3 1561 1624 616562592 616562528 5.690000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G083400 chr2A 38308364 38315205 6841 True 6025.000000 6168 100.000000 1 6842 2 chr2A.!!$R2 6841
1 TraesCS2A01G083400 chr2A 719537301 719541278 3977 False 1011.666667 2135 84.047667 868 5883 3 chr2A.!!$F2 5015
2 TraesCS2A01G083400 chr2A 478760842 478762803 1961 False 777.000000 1280 88.578500 4030 5839 2 chr2A.!!$F1 1809
3 TraesCS2A01G083400 chr2B 57664395 57676620 12225 True 1307.125000 3964 90.127375 870 6187 8 chr2B.!!$R3 5317
4 TraesCS2A01G083400 chr2B 706414746 706418483 3737 False 934.000000 2034 83.871000 1023 5883 3 chr2B.!!$F5 4860
5 TraesCS2A01G083400 chr2B 705889512 705890293 781 True 776.000000 776 84.625000 5099 5883 1 chr2B.!!$R1 784
6 TraesCS2A01G083400 chr2B 425349194 425353451 4257 False 634.666667 1253 88.774667 1056 5839 3 chr2B.!!$F4 4783
7 TraesCS2A01G083400 chr2B 57655827 57656556 729 True 439.500000 686 90.692500 6041 6795 2 chr2B.!!$R2 754
8 TraesCS2A01G083400 chr2D 585515750 585517413 1663 False 1574.000000 1574 83.859000 4218 5883 1 chr2D.!!$F1 1665
9 TraesCS2A01G083400 chr2D 34985022 34998807 13785 True 1259.333333 3938 89.848778 938 6842 9 chr2D.!!$R2 5904
10 TraesCS2A01G083400 chr2D 585473350 585477150 3800 False 1026.333333 2180 83.579000 868 5883 3 chr2D.!!$F4 5015
11 TraesCS2A01G083400 chr2D 357699998 357701806 1808 False 738.500000 1214 87.595000 4030 5839 2 chr2D.!!$F3 1809
12 TraesCS2A01G083400 chr2D 585501726 585502791 1065 False 420.000000 431 85.688500 967 2637 2 chr2D.!!$F5 1670
13 TraesCS2A01G083400 chr5A 6166455 6167313 858 True 1164.000000 1164 91.250000 1 864 1 chr5A.!!$R1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 955 0.112606 TCCTCACCTTGACCTCGTCT 59.887 55.0 0.00 0.0 33.15 4.18 F
1281 6932 0.250295 TTGTCTCCAAGCCCTTCACG 60.250 55.0 0.00 0.0 0.00 4.35 F
1778 7578 0.465705 TGTGCAGGAGGATTCGGATC 59.534 55.0 0.00 0.0 0.00 3.36 F
1779 7579 0.465705 GTGCAGGAGGATTCGGATCA 59.534 55.0 5.94 0.0 33.77 2.92 F
3761 11058 0.598065 AAATGGTTCTTCAGCGGTGC 59.402 50.0 10.38 0.0 0.00 5.01 F
5597 13163 0.918983 TCCAAATTCATCCCGCTCCT 59.081 50.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 7998 3.118629 GCAAGCATATATGATCCGAGGGA 60.119 47.826 17.10 0.0 35.55 4.20 R
2990 8887 2.683362 GGGTAGAAGGCTAATGTGCAAC 59.317 50.000 0.00 0.0 37.35 4.17 R
3761 11058 1.000896 AAGCCACAAGAATCCCCGG 60.001 57.895 0.00 0.0 0.00 5.73 R
3837 11139 6.307800 GCTTTGAAATTTTAGCACGCTCATAA 59.692 34.615 13.01 0.0 33.88 1.90 R
5739 13306 1.138859 CTCCAGATACCATCACCGCAA 59.861 52.381 0.00 0.0 0.00 4.85 R
6661 16375 0.172803 GTCTCGCCCGTGTACTTGAT 59.827 55.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 58 1.069906 CATACCGGCGCAATCTTAAGC 60.070 52.381 10.83 0.00 0.00 3.09
289 306 2.735762 CGCTTTTAGGAGAGGAAGGACG 60.736 54.545 0.00 0.00 0.00 4.79
302 319 0.338814 AAGGACGGTGAGGGGACTAT 59.661 55.000 0.00 0.00 44.43 2.12
331 348 2.048127 GCGAGGTCAAAGCTCCGT 60.048 61.111 0.00 0.00 39.44 4.69
352 369 2.032634 CCAGTGTTATGGCGCGTGT 61.033 57.895 8.43 0.00 32.48 4.49
374 391 3.245122 TGAAATAAGAAAGGGAAGGCGGT 60.245 43.478 0.00 0.00 0.00 5.68
393 410 1.798813 GTGAGATTTTCTTGGCGACGT 59.201 47.619 0.00 0.00 0.00 4.34
574 591 3.486209 GCGGCGGAAATCGAAGATTTTTA 60.486 43.478 9.78 0.00 45.12 1.52
795 812 3.047877 GGAGTGCGGGTTTGGTCG 61.048 66.667 0.00 0.00 0.00 4.79
803 820 0.322187 CGGGTTTGGTCGGGAGAAAT 60.322 55.000 0.00 0.00 42.89 2.17
805 822 1.544246 GGGTTTGGTCGGGAGAAATTG 59.456 52.381 0.00 0.00 42.89 2.32
847 864 0.787787 CCTCGCGACATGTTTTTCGA 59.212 50.000 3.71 9.78 37.43 3.71
850 867 2.896410 CTCGCGACATGTTTTTCGAAAG 59.104 45.455 3.71 1.59 37.43 2.62
861 878 3.690475 TTTTCGAAAGGGAGGGAGTAC 57.310 47.619 10.98 0.00 0.00 2.73
865 882 4.261411 TCGAAAGGGAGGGAGTACTAAT 57.739 45.455 0.00 0.00 0.00 1.73
867 884 5.769835 TCGAAAGGGAGGGAGTACTAATTA 58.230 41.667 0.00 0.00 0.00 1.40
869 886 6.323225 TCGAAAGGGAGGGAGTACTAATTAAG 59.677 42.308 0.00 0.00 0.00 1.85
870 887 5.890752 AAGGGAGGGAGTACTAATTAAGC 57.109 43.478 0.00 0.00 0.00 3.09
874 891 5.365895 GGGAGGGAGTACTAATTAAGCTTCA 59.634 44.000 0.00 0.00 0.00 3.02
875 892 6.463190 GGGAGGGAGTACTAATTAAGCTTCAG 60.463 46.154 0.00 0.00 0.00 3.02
899 916 7.010830 CAGTTTACGCCCTTTAAATACCTAGTC 59.989 40.741 0.00 0.00 0.00 2.59
904 921 4.411212 GCCCTTTAAATACCTAGTCCTCCA 59.589 45.833 0.00 0.00 0.00 3.86
938 955 0.112606 TCCTCACCTTGACCTCGTCT 59.887 55.000 0.00 0.00 33.15 4.18
979 6619 0.967380 CGAAGGGAGGCATTGGCTTT 60.967 55.000 14.57 4.77 38.98 3.51
991 6642 3.065371 GCATTGGCTTTGATACTAGCGTT 59.935 43.478 0.00 0.00 38.28 4.84
1101 6752 4.803426 CGGGAGCAGCTGACGGTC 62.803 72.222 20.43 5.44 0.00 4.79
1152 6803 0.978907 TGCTCTTCTGCCTCATCACA 59.021 50.000 0.00 0.00 0.00 3.58
1239 6890 3.374402 CTCGTGCGGACCTGGACT 61.374 66.667 0.00 0.00 0.00 3.85
1263 6914 2.325082 GCTGGACATGTTCGGCGTT 61.325 57.895 22.08 0.00 0.00 4.84
1281 6932 0.250295 TTGTCTCCAAGCCCTTCACG 60.250 55.000 0.00 0.00 0.00 4.35
1387 7144 6.317140 TGATATGATCCTTGACTCAAAACAGC 59.683 38.462 0.00 0.00 0.00 4.40
1389 7146 3.181440 TGATCCTTGACTCAAAACAGCCT 60.181 43.478 0.00 0.00 0.00 4.58
1406 7165 2.373169 AGCCTTCATGTGGACTTCTGAA 59.627 45.455 10.79 0.00 0.00 3.02
1529 7298 9.331282 CTAGGTATTGGAGAAAGATTAGGTTTG 57.669 37.037 0.00 0.00 0.00 2.93
1538 7307 8.297426 GGAGAAAGATTAGGTTTGGTTTTACTG 58.703 37.037 0.00 0.00 0.00 2.74
1573 7351 9.775854 GTATTAAAGGAAGTTATTACTCCCTCC 57.224 37.037 0.00 0.00 38.34 4.30
1574 7352 5.354842 AAAGGAAGTTATTACTCCCTCCG 57.645 43.478 0.00 0.00 38.34 4.63
1575 7353 3.991683 AGGAAGTTATTACTCCCTCCGT 58.008 45.455 0.00 0.00 33.00 4.69
1576 7354 3.959449 AGGAAGTTATTACTCCCTCCGTC 59.041 47.826 0.00 0.00 33.00 4.79
1577 7355 3.069300 GGAAGTTATTACTCCCTCCGTCC 59.931 52.174 0.00 0.00 31.99 4.79
1578 7356 2.675583 AGTTATTACTCCCTCCGTCCC 58.324 52.381 0.00 0.00 0.00 4.46
1579 7357 2.023695 AGTTATTACTCCCTCCGTCCCA 60.024 50.000 0.00 0.00 0.00 4.37
1580 7358 2.970640 GTTATTACTCCCTCCGTCCCAT 59.029 50.000 0.00 0.00 0.00 4.00
1581 7359 4.140853 AGTTATTACTCCCTCCGTCCCATA 60.141 45.833 0.00 0.00 0.00 2.74
1582 7360 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
1583 7361 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
1584 7362 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
1585 7363 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1586 7364 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1587 7365 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1588 7366 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1589 7367 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1590 7368 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1591 7369 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1592 7370 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1593 7371 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
1594 7372 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
1595 7373 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1596 7374 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
1597 7375 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1624 7402 6.978080 ACACTAGCAGTTGGTTTTTACAATTG 59.022 34.615 3.24 3.24 38.23 2.32
1661 7444 3.241783 TGTTTAACTTTGCAGCGTACG 57.758 42.857 11.84 11.84 0.00 3.67
1680 7469 6.595794 CGTACGTATCTGATTTTGGTGTTTT 58.404 36.000 7.22 0.00 0.00 2.43
1772 7572 2.905415 TCCATTTGTGCAGGAGGATT 57.095 45.000 0.00 0.00 0.00 3.01
1773 7573 2.726821 TCCATTTGTGCAGGAGGATTC 58.273 47.619 0.00 0.00 0.00 2.52
1774 7574 1.402968 CCATTTGTGCAGGAGGATTCG 59.597 52.381 0.00 0.00 0.00 3.34
1775 7575 1.402968 CATTTGTGCAGGAGGATTCGG 59.597 52.381 0.00 0.00 0.00 4.30
1776 7576 0.690192 TTTGTGCAGGAGGATTCGGA 59.310 50.000 0.00 0.00 0.00 4.55
1777 7577 0.911769 TTGTGCAGGAGGATTCGGAT 59.088 50.000 0.00 0.00 0.00 4.18
1778 7578 0.465705 TGTGCAGGAGGATTCGGATC 59.534 55.000 0.00 0.00 0.00 3.36
1779 7579 0.465705 GTGCAGGAGGATTCGGATCA 59.534 55.000 5.94 0.00 33.77 2.92
1780 7580 1.071385 GTGCAGGAGGATTCGGATCAT 59.929 52.381 5.94 0.00 33.77 2.45
1781 7581 2.300152 GTGCAGGAGGATTCGGATCATA 59.700 50.000 5.94 0.00 33.77 2.15
1782 7582 2.564504 TGCAGGAGGATTCGGATCATAG 59.435 50.000 5.94 0.00 33.77 2.23
1783 7583 2.093764 GCAGGAGGATTCGGATCATAGG 60.094 54.545 5.94 0.00 33.77 2.57
1784 7584 2.499289 CAGGAGGATTCGGATCATAGGG 59.501 54.545 5.94 0.00 33.77 3.53
1785 7585 2.383683 AGGAGGATTCGGATCATAGGGA 59.616 50.000 5.94 0.00 33.77 4.20
1786 7586 3.173965 GGAGGATTCGGATCATAGGGAA 58.826 50.000 5.94 0.00 33.77 3.97
1787 7587 3.583086 GGAGGATTCGGATCATAGGGAAA 59.417 47.826 5.94 0.00 33.77 3.13
1788 7588 4.323104 GGAGGATTCGGATCATAGGGAAAG 60.323 50.000 5.94 0.00 33.77 2.62
1789 7589 4.235372 AGGATTCGGATCATAGGGAAAGT 58.765 43.478 5.94 0.00 33.77 2.66
1790 7590 5.403512 AGGATTCGGATCATAGGGAAAGTA 58.596 41.667 5.94 0.00 33.77 2.24
1791 7591 6.026186 AGGATTCGGATCATAGGGAAAGTAT 58.974 40.000 5.94 0.00 33.77 2.12
1792 7592 6.155393 AGGATTCGGATCATAGGGAAAGTATC 59.845 42.308 5.94 0.00 33.77 2.24
1793 7593 6.070767 GGATTCGGATCATAGGGAAAGTATCA 60.071 42.308 5.94 0.00 33.77 2.15
1794 7594 5.723672 TCGGATCATAGGGAAAGTATCAC 57.276 43.478 0.00 0.00 0.00 3.06
1795 7595 5.144832 TCGGATCATAGGGAAAGTATCACA 58.855 41.667 0.00 0.00 32.04 3.58
1796 7596 5.780282 TCGGATCATAGGGAAAGTATCACAT 59.220 40.000 0.00 0.00 32.04 3.21
1797 7597 5.871524 CGGATCATAGGGAAAGTATCACATG 59.128 44.000 0.00 0.00 32.04 3.21
1798 7598 6.295292 CGGATCATAGGGAAAGTATCACATGA 60.295 42.308 0.00 0.00 35.16 3.07
1799 7599 7.580302 CGGATCATAGGGAAAGTATCACATGAT 60.580 40.741 0.00 0.00 39.89 2.45
1800 7600 8.762645 GGATCATAGGGAAAGTATCACATGATA 58.237 37.037 0.00 0.00 38.59 2.15
1811 7611 6.787085 GTATCACATGATACCAGCCTTTAC 57.213 41.667 17.70 0.00 46.87 2.01
1812 7612 4.835284 TCACATGATACCAGCCTTTACA 57.165 40.909 0.00 0.00 0.00 2.41
1813 7613 5.372343 TCACATGATACCAGCCTTTACAT 57.628 39.130 0.00 0.00 0.00 2.29
1814 7614 5.125356 TCACATGATACCAGCCTTTACATG 58.875 41.667 0.00 0.00 39.27 3.21
1815 7615 5.104569 TCACATGATACCAGCCTTTACATGA 60.105 40.000 0.00 0.00 37.59 3.07
1816 7616 5.766670 CACATGATACCAGCCTTTACATGAT 59.233 40.000 0.00 0.00 37.59 2.45
1817 7617 6.936335 CACATGATACCAGCCTTTACATGATA 59.064 38.462 0.00 0.00 37.59 2.15
1818 7618 6.936900 ACATGATACCAGCCTTTACATGATAC 59.063 38.462 0.00 0.00 37.59 2.24
1819 7619 5.865085 TGATACCAGCCTTTACATGATACC 58.135 41.667 0.00 0.00 0.00 2.73
1820 7620 5.368230 TGATACCAGCCTTTACATGATACCA 59.632 40.000 0.00 0.00 0.00 3.25
1821 7621 4.796110 ACCAGCCTTTACATGATACCAT 57.204 40.909 0.00 0.00 0.00 3.55
1899 7699 8.929260 ATCATGGATGTTCATAACACATATGT 57.071 30.769 1.41 1.41 45.50 2.29
1900 7700 8.382030 TCATGGATGTTCATAACACATATGTC 57.618 34.615 5.07 0.00 45.50 3.06
1901 7701 8.212995 TCATGGATGTTCATAACACATATGTCT 58.787 33.333 5.07 0.00 45.50 3.41
1902 7702 9.492973 CATGGATGTTCATAACACATATGTCTA 57.507 33.333 5.07 0.95 45.50 2.59
1903 7703 8.887036 TGGATGTTCATAACACATATGTCTAC 57.113 34.615 5.07 0.00 45.50 2.59
1904 7704 8.482128 TGGATGTTCATAACACATATGTCTACA 58.518 33.333 5.07 3.48 45.50 2.74
1905 7705 9.325198 GGATGTTCATAACACATATGTCTACAA 57.675 33.333 5.07 0.00 45.50 2.41
1907 7707 9.890629 ATGTTCATAACACATATGTCTACAACT 57.109 29.630 5.07 0.00 45.50 3.16
1908 7708 9.366216 TGTTCATAACACATATGTCTACAACTC 57.634 33.333 5.07 0.00 41.83 3.01
1909 7709 8.818057 GTTCATAACACATATGTCTACAACTCC 58.182 37.037 5.07 0.00 41.83 3.85
1910 7710 8.306313 TCATAACACATATGTCTACAACTCCT 57.694 34.615 5.07 0.00 41.83 3.69
1911 7711 9.416284 TCATAACACATATGTCTACAACTCCTA 57.584 33.333 5.07 0.00 41.83 2.94
1915 7715 9.787435 AACACATATGTCTACAACTCCTAAAAA 57.213 29.630 5.07 0.00 38.45 1.94
1916 7716 9.436957 ACACATATGTCTACAACTCCTAAAAAG 57.563 33.333 5.07 0.00 31.55 2.27
1917 7717 9.653287 CACATATGTCTACAACTCCTAAAAAGA 57.347 33.333 5.07 0.00 0.00 2.52
1978 7778 9.480053 AAAAGACAAATCCAAATGTGAATAGTG 57.520 29.630 0.00 0.00 0.00 2.74
1979 7779 7.765695 AGACAAATCCAAATGTGAATAGTGT 57.234 32.000 0.00 0.00 0.00 3.55
1980 7780 7.596494 AGACAAATCCAAATGTGAATAGTGTG 58.404 34.615 0.00 0.00 0.00 3.82
1981 7781 7.448161 AGACAAATCCAAATGTGAATAGTGTGA 59.552 33.333 0.00 0.00 0.00 3.58
1982 7782 8.125978 ACAAATCCAAATGTGAATAGTGTGAT 57.874 30.769 0.00 0.00 0.00 3.06
1983 7783 8.587608 ACAAATCCAAATGTGAATAGTGTGATT 58.412 29.630 0.00 0.00 0.00 2.57
1984 7784 9.426837 CAAATCCAAATGTGAATAGTGTGATTT 57.573 29.630 0.00 0.00 31.06 2.17
1987 7787 8.815141 TCCAAATGTGAATAGTGTGATTTTTG 57.185 30.769 0.00 0.00 0.00 2.44
1988 7788 7.384660 TCCAAATGTGAATAGTGTGATTTTTGC 59.615 33.333 0.00 0.00 0.00 3.68
1989 7789 7.385752 CCAAATGTGAATAGTGTGATTTTTGCT 59.614 33.333 0.00 0.00 0.00 3.91
1990 7790 8.767085 CAAATGTGAATAGTGTGATTTTTGCTT 58.233 29.630 0.00 0.00 0.00 3.91
1991 7791 8.891671 AATGTGAATAGTGTGATTTTTGCTTT 57.108 26.923 0.00 0.00 0.00 3.51
1992 7792 8.891671 ATGTGAATAGTGTGATTTTTGCTTTT 57.108 26.923 0.00 0.00 0.00 2.27
1993 7793 8.129161 TGTGAATAGTGTGATTTTTGCTTTTG 57.871 30.769 0.00 0.00 0.00 2.44
1994 7794 7.763528 TGTGAATAGTGTGATTTTTGCTTTTGT 59.236 29.630 0.00 0.00 0.00 2.83
1995 7795 8.268738 GTGAATAGTGTGATTTTTGCTTTTGTC 58.731 33.333 0.00 0.00 0.00 3.18
1996 7796 8.196771 TGAATAGTGTGATTTTTGCTTTTGTCT 58.803 29.630 0.00 0.00 0.00 3.41
1997 7797 8.947055 AATAGTGTGATTTTTGCTTTTGTCTT 57.053 26.923 0.00 0.00 0.00 3.01
1998 7798 6.892310 AGTGTGATTTTTGCTTTTGTCTTC 57.108 33.333 0.00 0.00 0.00 2.87
1999 7799 6.633856 AGTGTGATTTTTGCTTTTGTCTTCT 58.366 32.000 0.00 0.00 0.00 2.85
2000 7800 7.099120 AGTGTGATTTTTGCTTTTGTCTTCTT 58.901 30.769 0.00 0.00 0.00 2.52
2001 7801 7.603784 AGTGTGATTTTTGCTTTTGTCTTCTTT 59.396 29.630 0.00 0.00 0.00 2.52
2002 7802 8.229811 GTGTGATTTTTGCTTTTGTCTTCTTTT 58.770 29.630 0.00 0.00 0.00 2.27
2003 7803 8.229137 TGTGATTTTTGCTTTTGTCTTCTTTTG 58.771 29.630 0.00 0.00 0.00 2.44
2004 7804 8.442384 GTGATTTTTGCTTTTGTCTTCTTTTGA 58.558 29.630 0.00 0.00 0.00 2.69
2005 7805 8.442384 TGATTTTTGCTTTTGTCTTCTTTTGAC 58.558 29.630 0.00 0.00 35.21 3.18
2006 7806 7.721286 TTTTTGCTTTTGTCTTCTTTTGACA 57.279 28.000 0.00 0.00 41.94 3.58
2007 7807 6.704512 TTTGCTTTTGTCTTCTTTTGACAC 57.295 33.333 0.00 0.00 43.13 3.67
2008 7808 5.643379 TGCTTTTGTCTTCTTTTGACACT 57.357 34.783 0.00 0.00 43.13 3.55
2009 7809 6.751514 TGCTTTTGTCTTCTTTTGACACTA 57.248 33.333 0.00 0.00 43.13 2.74
2010 7810 7.333528 TGCTTTTGTCTTCTTTTGACACTAT 57.666 32.000 0.00 0.00 43.13 2.12
2011 7811 7.771183 TGCTTTTGTCTTCTTTTGACACTATT 58.229 30.769 0.00 0.00 43.13 1.73
2012 7812 8.250332 TGCTTTTGTCTTCTTTTGACACTATTT 58.750 29.630 0.00 0.00 43.13 1.40
2013 7813 9.730420 GCTTTTGTCTTCTTTTGACACTATTTA 57.270 29.630 0.00 0.00 43.13 1.40
2019 7819 9.994432 GTCTTCTTTTGACACTATTTATGATGG 57.006 33.333 0.00 0.00 34.80 3.51
2020 7820 9.958180 TCTTCTTTTGACACTATTTATGATGGA 57.042 29.630 0.00 0.00 0.00 3.41
2027 7827 9.685276 TTGACACTATTTATGATGGATTTGTCT 57.315 29.630 0.00 0.00 32.63 3.41
2028 7828 9.685276 TGACACTATTTATGATGGATTTGTCTT 57.315 29.630 0.00 0.00 32.63 3.01
2052 7852 7.979115 TTTTTGTTTCTCCTTGTGTATTTCG 57.021 32.000 0.00 0.00 0.00 3.46
2053 7853 6.928979 TTTGTTTCTCCTTGTGTATTTCGA 57.071 33.333 0.00 0.00 0.00 3.71
2054 7854 7.504924 TTTGTTTCTCCTTGTGTATTTCGAT 57.495 32.000 0.00 0.00 0.00 3.59
2055 7855 7.504924 TTGTTTCTCCTTGTGTATTTCGATT 57.495 32.000 0.00 0.00 0.00 3.34
2056 7856 7.504924 TGTTTCTCCTTGTGTATTTCGATTT 57.495 32.000 0.00 0.00 0.00 2.17
2057 7857 7.936584 TGTTTCTCCTTGTGTATTTCGATTTT 58.063 30.769 0.00 0.00 0.00 1.82
2058 7858 8.073768 TGTTTCTCCTTGTGTATTTCGATTTTC 58.926 33.333 0.00 0.00 0.00 2.29
2059 7859 6.403333 TCTCCTTGTGTATTTCGATTTTCG 57.597 37.500 0.00 0.00 42.10 3.46
2092 7892 6.582677 TTTTAGGGGTTGTCAACATATGTG 57.417 37.500 17.29 4.13 0.00 3.21
2093 7893 3.806949 AGGGGTTGTCAACATATGTGT 57.193 42.857 17.29 0.00 41.28 3.72
2108 7908 7.926674 ACATATGTGTTGTGAGAATTCATGA 57.073 32.000 7.78 0.00 34.01 3.07
2109 7909 8.515695 ACATATGTGTTGTGAGAATTCATGAT 57.484 30.769 7.78 0.00 34.01 2.45
2110 7910 8.963725 ACATATGTGTTGTGAGAATTCATGATT 58.036 29.630 7.78 0.00 34.01 2.57
2111 7911 9.797556 CATATGTGTTGTGAGAATTCATGATTT 57.202 29.630 8.44 0.00 35.39 2.17
2150 7950 9.766277 TTTGACATGTTTAAATTTGAGTTTTGC 57.234 25.926 0.00 0.00 0.00 3.68
2151 7951 8.484641 TGACATGTTTAAATTTGAGTTTTGCA 57.515 26.923 0.00 0.00 0.00 4.08
2152 7952 8.939929 TGACATGTTTAAATTTGAGTTTTGCAA 58.060 25.926 0.00 0.00 0.00 4.08
2153 7953 9.424659 GACATGTTTAAATTTGAGTTTTGCAAG 57.575 29.630 0.00 0.00 0.00 4.01
2154 7954 8.945057 ACATGTTTAAATTTGAGTTTTGCAAGT 58.055 25.926 0.00 0.00 0.00 3.16
2155 7955 9.771915 CATGTTTAAATTTGAGTTTTGCAAGTT 57.228 25.926 0.00 0.00 0.00 2.66
2164 7964 9.630098 ATTTGAGTTTTGCAAGTTAGTATCATG 57.370 29.630 0.00 0.00 0.00 3.07
2165 7965 7.144722 TGAGTTTTGCAAGTTAGTATCATGG 57.855 36.000 0.00 0.00 0.00 3.66
2166 7966 6.714810 TGAGTTTTGCAAGTTAGTATCATGGT 59.285 34.615 0.00 0.00 0.00 3.55
2167 7967 7.880713 TGAGTTTTGCAAGTTAGTATCATGGTA 59.119 33.333 0.00 0.00 0.00 3.25
2168 7968 8.807948 AGTTTTGCAAGTTAGTATCATGGTAT 57.192 30.769 0.00 0.00 0.00 2.73
2169 7969 8.893727 AGTTTTGCAAGTTAGTATCATGGTATC 58.106 33.333 0.00 0.00 0.00 2.24
2170 7970 8.673711 GTTTTGCAAGTTAGTATCATGGTATCA 58.326 33.333 0.00 0.00 0.00 2.15
2171 7971 8.978874 TTTGCAAGTTAGTATCATGGTATCAT 57.021 30.769 0.00 0.00 0.00 2.45
2183 7983 4.464008 CATGGTATCATGTAAAGGCTGGT 58.536 43.478 7.88 0.00 44.22 4.00
2184 7984 5.620206 CATGGTATCATGTAAAGGCTGGTA 58.380 41.667 7.88 0.00 44.22 3.25
2185 7985 5.904984 TGGTATCATGTAAAGGCTGGTAT 57.095 39.130 0.00 0.00 0.00 2.73
2186 7986 5.865085 TGGTATCATGTAAAGGCTGGTATC 58.135 41.667 0.00 0.00 0.00 2.24
2187 7987 5.368230 TGGTATCATGTAAAGGCTGGTATCA 59.632 40.000 0.00 0.00 0.00 2.15
2188 7988 6.044287 TGGTATCATGTAAAGGCTGGTATCAT 59.956 38.462 0.00 0.00 0.00 2.45
2189 7989 6.372659 GGTATCATGTAAAGGCTGGTATCATG 59.627 42.308 0.00 0.04 34.46 3.07
2190 7990 5.372343 TCATGTAAAGGCTGGTATCATGT 57.628 39.130 13.66 0.00 34.67 3.21
2191 7991 5.125356 TCATGTAAAGGCTGGTATCATGTG 58.875 41.667 13.66 0.00 34.67 3.21
2192 7992 4.835284 TGTAAAGGCTGGTATCATGTGA 57.165 40.909 0.00 0.00 0.00 3.58
2193 7993 5.372343 TGTAAAGGCTGGTATCATGTGAT 57.628 39.130 0.68 0.68 38.51 3.06
2194 7994 6.493189 TGTAAAGGCTGGTATCATGTGATA 57.507 37.500 0.00 0.00 36.05 2.15
2299 8099 2.365617 GGATGTGAAGAATCCCTCGCTA 59.634 50.000 0.00 0.00 38.13 4.26
2311 8111 2.771943 TCCCTCGCTAAGTTGGATGATT 59.228 45.455 0.00 0.00 0.00 2.57
2415 8217 7.823799 TGTGTGTGCATCTTTCATCTTTATCTA 59.176 33.333 0.00 0.00 0.00 1.98
2419 8221 8.768019 TGTGCATCTTTCATCTTTATCTAATCG 58.232 33.333 0.00 0.00 0.00 3.34
2452 8255 6.384258 TTTTGTAATCAAGTGCAGCAACTA 57.616 33.333 0.00 0.00 34.88 2.24
2461 8264 2.154462 GTGCAGCAACTAGGACAACAT 58.846 47.619 0.00 0.00 0.00 2.71
2505 8316 1.953686 TCAGTTTGGTGTTTGCTAGGC 59.046 47.619 0.00 0.00 0.00 3.93
2579 8390 3.120321 TCATAAACAGCGTCCACACTT 57.880 42.857 0.00 0.00 0.00 3.16
2612 8423 9.997482 GAGATGAGTTAGTAGAGTAAGAAACAG 57.003 37.037 0.00 0.00 0.00 3.16
2640 8451 8.479689 TCATCATTGATCCTTAATTTTGTGCAT 58.520 29.630 0.00 0.00 0.00 3.96
2644 8455 9.027129 CATTGATCCTTAATTTTGTGCATACTG 57.973 33.333 0.00 0.00 0.00 2.74
2678 8490 6.727231 TCTGTACTTTGGAGGGACAGTTATTA 59.273 38.462 6.06 0.00 39.81 0.98
2720 8604 7.906327 TCTTGTCCGATGATTGGATGAATATA 58.094 34.615 4.39 0.00 37.93 0.86
2764 8652 5.167121 TGCGCAATTGCACAATTAGTAATT 58.833 33.333 28.77 2.10 40.62 1.40
2830 8718 6.988580 GGTACTTTTACGGCTTATATCAGGTT 59.011 38.462 0.00 0.00 0.00 3.50
2864 8758 0.623723 TGGGTCCCCATGACTTAAGC 59.376 55.000 5.13 0.00 43.89 3.09
2872 8767 6.071051 GGTCCCCATGACTTAAGCATTTTAAA 60.071 38.462 1.29 0.00 43.89 1.52
2883 8778 9.740710 ACTTAAGCATTTTAAATACTGTCTCCT 57.259 29.630 1.29 0.00 0.00 3.69
2898 8793 6.540995 ACTGTCTCCTAACTGTTAGTGACTA 58.459 40.000 29.37 21.61 36.57 2.59
2943 8840 5.423610 TGTCTTCCATTTGACCTTTTTCCAA 59.576 36.000 0.00 0.00 32.67 3.53
2944 8841 5.985530 GTCTTCCATTTGACCTTTTTCCAAG 59.014 40.000 0.00 0.00 0.00 3.61
2973 8870 1.901833 ACTGATGGTTGCCAAAATCCC 59.098 47.619 0.00 0.00 36.95 3.85
2974 8871 2.181975 CTGATGGTTGCCAAAATCCCT 58.818 47.619 0.00 0.00 36.95 4.20
2983 8880 5.163447 GGTTGCCAAAATCCCTTAATAGTCC 60.163 44.000 0.00 0.00 0.00 3.85
2990 8887 8.416329 CCAAAATCCCTTAATAGTCCAATGAAG 58.584 37.037 0.00 0.00 0.00 3.02
3008 8905 4.905429 TGAAGTTGCACATTAGCCTTCTA 58.095 39.130 0.00 0.00 35.31 2.10
3021 8918 4.338379 AGCCTTCTACCCATTTATCGAC 57.662 45.455 0.00 0.00 0.00 4.20
3082 10377 8.478066 AGTAGCATGTACATGAGAGAACAAATA 58.522 33.333 34.65 10.83 41.20 1.40
3083 10378 9.265901 GTAGCATGTACATGAGAGAACAAATAT 57.734 33.333 34.65 6.46 41.20 1.28
3152 10447 6.968904 AGCTCGCAATTAGTTTGTAATGAATG 59.031 34.615 0.00 0.00 37.65 2.67
3160 10455 7.859325 TTAGTTTGTAATGAATGGAGGCTAC 57.141 36.000 0.00 0.00 0.00 3.58
3168 10463 5.808366 ATGAATGGAGGCTACGAATTCTA 57.192 39.130 10.23 0.09 0.00 2.10
3603 10899 6.199908 GGATGAACTTTGATGTCTCTGTATCG 59.800 42.308 0.00 0.00 0.00 2.92
3638 10935 6.346096 TGACTACATATTCTTGGGTTACTGC 58.654 40.000 0.00 0.00 0.00 4.40
3756 11053 5.126396 ACTGCTTTAAATGGTTCTTCAGC 57.874 39.130 0.00 0.00 0.00 4.26
3761 11058 0.598065 AAATGGTTCTTCAGCGGTGC 59.402 50.000 10.38 0.00 0.00 5.01
3821 11118 3.368739 GGCCTTGCAGCATTTAAGAACAT 60.369 43.478 0.00 0.00 0.00 2.71
3858 11160 7.132213 GCTATTATGAGCGTGCTAAAATTTCA 58.868 34.615 0.00 0.00 31.57 2.69
3862 11164 3.980775 TGAGCGTGCTAAAATTTCAAAGC 59.019 39.130 11.31 11.31 35.51 3.51
3863 11165 3.976169 AGCGTGCTAAAATTTCAAAGCA 58.024 36.364 15.13 15.13 42.41 3.91
3930 11236 7.887381 TCGAAACAAAATTTGCCTTCCTTATA 58.113 30.769 5.52 0.00 0.00 0.98
3931 11237 8.361139 TCGAAACAAAATTTGCCTTCCTTATAA 58.639 29.630 5.52 0.00 0.00 0.98
3966 11284 8.316214 GGATAATTTGGACATGCATGGATTATT 58.684 33.333 29.41 21.10 0.00 1.40
4370 11701 4.843728 ACCATGTTGTGAACCGATCTAAT 58.156 39.130 0.00 0.00 0.00 1.73
4442 11778 6.830324 TCTCTTGTTTCCCTCCATATTGAATG 59.170 38.462 0.00 0.00 0.00 2.67
4547 11911 6.257849 GCATAGTGGTCGTAATTCATGAGAAA 59.742 38.462 0.00 0.00 37.29 2.52
4635 12171 9.155975 TCTTTATTCACTTAATGCTCAGTCTTC 57.844 33.333 0.00 0.00 0.00 2.87
5031 12596 5.756950 CAGCAATTTCAACTGCAATAGTG 57.243 39.130 0.00 0.00 40.26 2.74
5505 13071 2.983030 TTGCCGCGACATTGCCTT 60.983 55.556 8.23 0.00 0.00 4.35
5571 13137 1.211567 TCCGGGATGTCACCCCAAAT 61.212 55.000 2.20 0.00 46.62 2.32
5572 13138 1.037030 CCGGGATGTCACCCCAAATG 61.037 60.000 2.20 0.00 46.62 2.32
5577 13143 2.241176 GGATGTCACCCCAAATGGTCTA 59.759 50.000 0.00 0.00 36.12 2.59
5597 13163 0.918983 TCCAAATTCATCCCGCTCCT 59.081 50.000 0.00 0.00 0.00 3.69
5649 13215 3.057019 GGCATACTTCGCGATTGACATA 58.943 45.455 10.88 0.00 0.00 2.29
5684 13251 6.065976 TGTCATCTTGTTTGTATGGGAGAT 57.934 37.500 0.00 0.00 0.00 2.75
5739 13306 1.000274 GCGGTTGCTTCTGGTTTGATT 60.000 47.619 0.00 0.00 38.39 2.57
5924 13491 4.098349 ACCATGGCAATACAACAATAGCTG 59.902 41.667 13.04 0.00 0.00 4.24
5949 13516 7.328249 TGTGTTCATTTTGTTTGTGTCTTCTTC 59.672 33.333 0.00 0.00 0.00 2.87
6113 15810 7.624360 AGACGGTATAAATGATGCAAAAGAA 57.376 32.000 0.00 0.00 0.00 2.52
6118 15815 7.164171 CGGTATAAATGATGCAAAAGAAACTCG 59.836 37.037 0.00 0.00 0.00 4.18
6121 15818 1.069296 TGATGCAAAAGAAACTCGCCG 60.069 47.619 0.00 0.00 0.00 6.46
6150 15847 6.204688 AGTTTCAATCAAAGTGCGTTCATAGA 59.795 34.615 0.00 0.00 0.00 1.98
6151 15848 6.552859 TTCAATCAAAGTGCGTTCATAGAA 57.447 33.333 0.00 0.00 0.00 2.10
6168 15865 9.512435 GTTCATAGAAAGTGTATGTACGTGTAT 57.488 33.333 0.00 0.00 31.00 2.29
6179 15876 6.861055 TGTATGTACGTGTATGTGAGCATATG 59.139 38.462 0.00 0.00 39.49 1.78
6181 15878 2.483876 ACGTGTATGTGAGCATATGCC 58.516 47.619 23.96 15.47 43.38 4.40
6251 15948 1.541310 TTCCACTACGAGCACCAGGG 61.541 60.000 0.00 0.00 0.00 4.45
6324 16022 4.154347 CTCAGAGCCTCGTGCCCC 62.154 72.222 0.00 0.00 42.71 5.80
6327 16025 4.704103 AGAGCCTCGTGCCCCTCA 62.704 66.667 0.00 0.00 42.71 3.86
6328 16026 3.474570 GAGCCTCGTGCCCCTCAT 61.475 66.667 0.00 0.00 42.71 2.90
6333 16031 3.626996 CTCGTGCCCCTCATGCCAA 62.627 63.158 0.00 0.00 0.00 4.52
6352 16050 2.936498 CAATACATGGTCGACTTGGGTC 59.064 50.000 16.46 0.00 38.97 4.46
6366 16064 0.250793 TGGGTCGAACCGTAATGCAT 59.749 50.000 16.31 0.00 39.83 3.96
6453 16151 1.033746 CCATCGAGGCAAGGCATTGT 61.034 55.000 13.30 0.00 38.76 2.71
6456 16154 2.338015 CGAGGCAAGGCATTGTGCT 61.338 57.895 13.30 0.00 44.28 4.40
6457 16155 1.509923 GAGGCAAGGCATTGTGCTC 59.490 57.895 13.30 0.84 44.28 4.26
6458 16156 2.180017 GGCAAGGCATTGTGCTCG 59.820 61.111 13.30 0.00 44.28 5.03
6464 16162 2.391821 GCATTGTGCTCGTCGTCG 59.608 61.111 0.00 0.00 40.96 5.12
6470 16168 4.994201 TGCTCGTCGTCGTGGCAC 62.994 66.667 7.79 7.79 39.76 5.01
6477 16175 4.351938 CGTCGTGGCACGGGAAGA 62.352 66.667 36.30 16.95 42.81 2.87
6513 16211 0.948678 GCCACAGTAACCTTTGCGAA 59.051 50.000 0.00 0.00 0.00 4.70
6566 16280 2.480073 GCATCATCAACCATTTCCACCG 60.480 50.000 0.00 0.00 0.00 4.94
6567 16281 2.577606 TCATCAACCATTTCCACCGT 57.422 45.000 0.00 0.00 0.00 4.83
6582 16296 2.342650 CCGTACGACTCCCCCGAAA 61.343 63.158 18.76 0.00 0.00 3.46
6594 16308 0.108709 CCCCGAAAATGGTGTGCATG 60.109 55.000 0.00 0.00 0.00 4.06
6621 16335 4.525912 AAAAGCATTTGACTCCCACATC 57.474 40.909 0.00 0.00 39.02 3.06
6623 16337 0.734889 GCATTTGACTCCCACATCCG 59.265 55.000 0.00 0.00 0.00 4.18
6624 16338 0.734889 CATTTGACTCCCACATCCGC 59.265 55.000 0.00 0.00 0.00 5.54
6658 16372 1.276421 CACCAGGATTTCGAGTCACCT 59.724 52.381 0.00 0.00 0.00 4.00
6661 16375 2.496070 CCAGGATTTCGAGTCACCTACA 59.504 50.000 0.00 0.00 0.00 2.74
6770 16487 1.216977 CCGTTCATGGCCGACTACA 59.783 57.895 0.00 0.00 0.00 2.74
6795 16512 8.902806 CAATAATGCAAAATACTCCCTCTGTAA 58.097 33.333 0.00 0.00 0.00 2.41
6814 16539 9.781834 CTCTGTAAAGTACTTCTTAGATCACTG 57.218 37.037 8.95 2.49 35.02 3.66
6815 16540 8.244802 TCTGTAAAGTACTTCTTAGATCACTGC 58.755 37.037 8.95 0.00 35.02 4.40
6823 16548 9.505995 GTACTTCTTAGATCACTGCTACTTTAC 57.494 37.037 0.00 0.00 0.00 2.01
6828 16553 8.625651 TCTTAGATCACTGCTACTTTACTGATC 58.374 37.037 0.00 0.00 36.02 2.92
6833 16558 9.587772 GATCACTGCTACTTTACTGATCTAAAA 57.412 33.333 0.00 0.00 33.95 1.52
6834 16559 9.944376 ATCACTGCTACTTTACTGATCTAAAAA 57.056 29.630 0.00 0.00 0.00 1.94
6835 16560 9.424319 TCACTGCTACTTTACTGATCTAAAAAG 57.576 33.333 10.67 10.67 35.54 2.27
6837 16562 9.425577 ACTGCTACTTTACTGATCTAAAAAGTC 57.574 33.333 17.40 9.42 40.38 3.01
6838 16563 9.646427 CTGCTACTTTACTGATCTAAAAAGTCT 57.354 33.333 17.40 4.14 40.38 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 58 0.332632 TGCATTCCCCTCTTTCCTGG 59.667 55.000 0.00 0.00 0.00 4.45
194 211 0.038159 CCTTCTCTTGTTCGCTCCGT 60.038 55.000 0.00 0.00 0.00 4.69
235 252 1.380112 GGAGAGTACCTCAGCCGGT 60.380 63.158 1.90 0.00 43.76 5.28
247 264 1.833049 CTAATCCCGGGCGGAGAGT 60.833 63.158 18.49 0.00 46.60 3.24
309 326 2.048127 GCTTTGACCTCGCCTCGT 60.048 61.111 0.00 0.00 0.00 4.18
350 367 3.756434 CGCCTTCCCTTTCTTATTTCACA 59.244 43.478 0.00 0.00 0.00 3.58
352 369 3.245122 ACCGCCTTCCCTTTCTTATTTCA 60.245 43.478 0.00 0.00 0.00 2.69
374 391 2.066262 GACGTCGCCAAGAAAATCTCA 58.934 47.619 0.00 0.00 0.00 3.27
745 762 1.817099 CGACAGAATCCCCAGCTGC 60.817 63.158 8.66 0.00 33.03 5.25
757 774 0.748367 CGTCATCCTCCTCCGACAGA 60.748 60.000 0.00 0.00 0.00 3.41
847 864 5.971260 AGCTTAATTAGTACTCCCTCCCTTT 59.029 40.000 0.00 0.00 0.00 3.11
850 867 5.365895 TGAAGCTTAATTAGTACTCCCTCCC 59.634 44.000 0.00 0.00 0.00 4.30
861 878 5.585047 AGGGCGTAAACTGAAGCTTAATTAG 59.415 40.000 0.00 0.00 0.00 1.73
865 882 3.412237 AGGGCGTAAACTGAAGCTTAA 57.588 42.857 0.00 0.00 0.00 1.85
867 884 2.271944 AAGGGCGTAAACTGAAGCTT 57.728 45.000 0.00 0.00 0.00 3.74
869 886 4.492791 TTTAAAGGGCGTAAACTGAAGC 57.507 40.909 0.00 0.00 0.00 3.86
870 887 6.373495 AGGTATTTAAAGGGCGTAAACTGAAG 59.627 38.462 0.00 0.00 0.00 3.02
874 891 6.950842 ACTAGGTATTTAAAGGGCGTAAACT 58.049 36.000 0.00 0.00 0.00 2.66
875 892 6.258727 GGACTAGGTATTTAAAGGGCGTAAAC 59.741 42.308 0.00 0.00 0.00 2.01
899 916 1.462616 TGAATGAATTGGCGTGGAGG 58.537 50.000 0.00 0.00 0.00 4.30
904 921 2.684881 GTGAGGATGAATGAATTGGCGT 59.315 45.455 0.00 0.00 0.00 5.68
938 955 1.347707 CTCAGACTTTGGGTGCTGGTA 59.652 52.381 0.00 0.00 0.00 3.25
979 6619 2.681344 TCTCTTGCGAACGCTAGTATCA 59.319 45.455 23.61 9.17 42.79 2.15
991 6642 0.755327 TCCGATCCCATCTCTTGCGA 60.755 55.000 0.00 0.00 0.00 5.10
1101 6752 4.329545 CTCACCACCACACCCCGG 62.330 72.222 0.00 0.00 0.00 5.73
1152 6803 2.992089 CGTGAGGTTGAGCTTGTGT 58.008 52.632 0.00 0.00 0.00 3.72
1263 6914 1.118965 TCGTGAAGGGCTTGGAGACA 61.119 55.000 0.00 0.00 39.83 3.41
1281 6932 0.033504 TGACGGTGTTCTCCTGCTTC 59.966 55.000 0.00 0.00 0.00 3.86
1387 7144 2.746362 GCTTCAGAAGTCCACATGAAGG 59.254 50.000 11.94 0.41 45.59 3.46
1389 7146 3.071457 TCAGCTTCAGAAGTCCACATGAA 59.929 43.478 11.94 0.00 0.00 2.57
1406 7165 7.010552 CACGTACTTAATTAGCAGAAATCAGCT 59.989 37.037 5.62 5.62 41.67 4.24
1473 7232 3.068307 CCACCCAAATCAAACACCGTTTA 59.932 43.478 0.00 0.00 0.00 2.01
1474 7233 2.159028 CCACCCAAATCAAACACCGTTT 60.159 45.455 0.00 0.00 0.00 3.60
1484 7243 2.607499 AGCAATGTTCCACCCAAATCA 58.393 42.857 0.00 0.00 0.00 2.57
1566 7344 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1567 7345 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1568 7346 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1569 7347 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1570 7348 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
1571 7349 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
1572 7350 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
1573 7351 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
1594 7372 8.521176 TGTAAAAACCAACTGCTAGTGTAAAAA 58.479 29.630 0.00 0.00 0.00 1.94
1595 7373 8.053026 TGTAAAAACCAACTGCTAGTGTAAAA 57.947 30.769 0.00 0.00 0.00 1.52
1596 7374 7.627298 TGTAAAAACCAACTGCTAGTGTAAA 57.373 32.000 0.00 0.00 0.00 2.01
1597 7375 7.627298 TTGTAAAAACCAACTGCTAGTGTAA 57.373 32.000 0.00 0.00 0.00 2.41
1598 7376 7.811117 ATTGTAAAAACCAACTGCTAGTGTA 57.189 32.000 0.00 0.00 0.00 2.90
1599 7377 6.709018 ATTGTAAAAACCAACTGCTAGTGT 57.291 33.333 0.00 0.00 0.00 3.55
1600 7378 6.074356 GCAATTGTAAAAACCAACTGCTAGTG 60.074 38.462 7.40 0.00 40.72 2.74
1601 7379 5.983118 GCAATTGTAAAAACCAACTGCTAGT 59.017 36.000 7.40 0.00 40.72 2.57
1602 7380 5.982516 TGCAATTGTAAAAACCAACTGCTAG 59.017 36.000 7.40 0.00 43.37 3.42
1603 7381 5.907207 TGCAATTGTAAAAACCAACTGCTA 58.093 33.333 7.40 0.00 43.37 3.49
1604 7382 4.764172 TGCAATTGTAAAAACCAACTGCT 58.236 34.783 7.40 0.00 43.37 4.24
1605 7383 5.671742 ATGCAATTGTAAAAACCAACTGC 57.328 34.783 7.40 0.15 43.30 4.40
1606 7384 7.918643 AGAAATGCAATTGTAAAAACCAACTG 58.081 30.769 7.40 0.00 36.10 3.16
1607 7385 8.504812 AAGAAATGCAATTGTAAAAACCAACT 57.495 26.923 7.40 0.00 36.10 3.16
1680 7469 3.708631 TCAATTTTTCTGCCACTCCCAAA 59.291 39.130 0.00 0.00 0.00 3.28
1691 7480 4.107622 GCCCATCGTCATCAATTTTTCTG 58.892 43.478 0.00 0.00 0.00 3.02
1772 7572 5.144832 TGTGATACTTTCCCTATGATCCGA 58.855 41.667 0.00 0.00 0.00 4.55
1773 7573 5.468540 TGTGATACTTTCCCTATGATCCG 57.531 43.478 0.00 0.00 0.00 4.18
1774 7574 7.009179 TCATGTGATACTTTCCCTATGATCC 57.991 40.000 0.00 0.00 0.00 3.36
1789 7589 6.493189 TGTAAAGGCTGGTATCATGTGATA 57.507 37.500 0.00 0.00 36.05 2.15
1790 7590 5.372343 TGTAAAGGCTGGTATCATGTGAT 57.628 39.130 0.68 0.68 38.51 3.06
1791 7591 4.835284 TGTAAAGGCTGGTATCATGTGA 57.165 40.909 0.00 0.00 0.00 3.58
1792 7592 5.125356 TCATGTAAAGGCTGGTATCATGTG 58.875 41.667 13.66 0.00 34.67 3.21
1793 7593 5.372343 TCATGTAAAGGCTGGTATCATGT 57.628 39.130 13.66 0.00 34.67 3.21
1794 7594 6.372659 GGTATCATGTAAAGGCTGGTATCATG 59.627 42.308 0.00 0.04 34.46 3.07
1795 7595 6.044287 TGGTATCATGTAAAGGCTGGTATCAT 59.956 38.462 0.00 0.00 0.00 2.45
1796 7596 5.368230 TGGTATCATGTAAAGGCTGGTATCA 59.632 40.000 0.00 0.00 0.00 2.15
1797 7597 5.865085 TGGTATCATGTAAAGGCTGGTATC 58.135 41.667 0.00 0.00 0.00 2.24
1798 7598 5.904984 TGGTATCATGTAAAGGCTGGTAT 57.095 39.130 0.00 0.00 0.00 2.73
1799 7599 5.620206 CATGGTATCATGTAAAGGCTGGTA 58.380 41.667 7.88 0.00 44.22 3.25
1800 7600 4.464008 CATGGTATCATGTAAAGGCTGGT 58.536 43.478 7.88 0.00 44.22 4.00
1873 7673 9.358406 ACATATGTGTTATGAACATCCATGATT 57.642 29.630 7.78 0.00 44.35 2.57
1874 7674 8.929260 ACATATGTGTTATGAACATCCATGAT 57.071 30.769 7.78 0.00 44.35 2.45
1875 7675 8.212995 AGACATATGTGTTATGAACATCCATGA 58.787 33.333 14.43 0.00 44.35 3.07
1876 7676 8.387190 AGACATATGTGTTATGAACATCCATG 57.613 34.615 14.43 2.88 44.35 3.66
1877 7677 9.494271 GTAGACATATGTGTTATGAACATCCAT 57.506 33.333 14.43 0.00 44.35 3.41
1878 7678 8.482128 TGTAGACATATGTGTTATGAACATCCA 58.518 33.333 14.43 0.00 44.35 3.41
1879 7679 8.887036 TGTAGACATATGTGTTATGAACATCC 57.113 34.615 14.43 0.00 44.35 3.51
1881 7681 9.890629 AGTTGTAGACATATGTGTTATGAACAT 57.109 29.630 14.43 0.00 44.35 2.71
1882 7682 9.366216 GAGTTGTAGACATATGTGTTATGAACA 57.634 33.333 14.43 7.25 40.22 3.18
1883 7683 8.818057 GGAGTTGTAGACATATGTGTTATGAAC 58.182 37.037 14.43 9.84 40.22 3.18
1884 7684 8.758829 AGGAGTTGTAGACATATGTGTTATGAA 58.241 33.333 14.43 0.00 40.22 2.57
1885 7685 8.306313 AGGAGTTGTAGACATATGTGTTATGA 57.694 34.615 14.43 0.00 40.22 2.15
1889 7689 9.787435 TTTTTAGGAGTTGTAGACATATGTGTT 57.213 29.630 14.43 3.86 39.09 3.32
1890 7690 9.436957 CTTTTTAGGAGTTGTAGACATATGTGT 57.563 33.333 14.43 12.38 42.49 3.72
1891 7691 9.653287 TCTTTTTAGGAGTTGTAGACATATGTG 57.347 33.333 14.43 0.00 0.00 3.21
1952 7752 9.480053 CACTATTCACATTTGGATTTGTCTTTT 57.520 29.630 0.00 0.00 0.00 2.27
1953 7753 8.641541 ACACTATTCACATTTGGATTTGTCTTT 58.358 29.630 0.00 0.00 0.00 2.52
1954 7754 8.084073 CACACTATTCACATTTGGATTTGTCTT 58.916 33.333 0.00 0.00 0.00 3.01
1955 7755 7.448161 TCACACTATTCACATTTGGATTTGTCT 59.552 33.333 0.00 0.00 0.00 3.41
1956 7756 7.592938 TCACACTATTCACATTTGGATTTGTC 58.407 34.615 0.00 0.00 0.00 3.18
1957 7757 7.523293 TCACACTATTCACATTTGGATTTGT 57.477 32.000 0.00 0.00 0.00 2.83
1958 7758 8.991243 AATCACACTATTCACATTTGGATTTG 57.009 30.769 0.00 0.00 0.00 2.32
1961 7761 9.426837 CAAAAATCACACTATTCACATTTGGAT 57.573 29.630 0.00 0.00 0.00 3.41
1962 7762 7.384660 GCAAAAATCACACTATTCACATTTGGA 59.615 33.333 0.00 0.00 0.00 3.53
1963 7763 7.385752 AGCAAAAATCACACTATTCACATTTGG 59.614 33.333 0.00 0.00 0.00 3.28
1964 7764 8.301730 AGCAAAAATCACACTATTCACATTTG 57.698 30.769 0.00 0.00 0.00 2.32
1965 7765 8.891671 AAGCAAAAATCACACTATTCACATTT 57.108 26.923 0.00 0.00 0.00 2.32
1966 7766 8.891671 AAAGCAAAAATCACACTATTCACATT 57.108 26.923 0.00 0.00 0.00 2.71
1967 7767 8.767085 CAAAAGCAAAAATCACACTATTCACAT 58.233 29.630 0.00 0.00 0.00 3.21
1968 7768 7.763528 ACAAAAGCAAAAATCACACTATTCACA 59.236 29.630 0.00 0.00 0.00 3.58
1969 7769 8.130307 ACAAAAGCAAAAATCACACTATTCAC 57.870 30.769 0.00 0.00 0.00 3.18
1970 7770 8.196771 AGACAAAAGCAAAAATCACACTATTCA 58.803 29.630 0.00 0.00 0.00 2.57
1971 7771 8.579682 AGACAAAAGCAAAAATCACACTATTC 57.420 30.769 0.00 0.00 0.00 1.75
1972 7772 8.947055 AAGACAAAAGCAAAAATCACACTATT 57.053 26.923 0.00 0.00 0.00 1.73
1973 7773 8.416329 AGAAGACAAAAGCAAAAATCACACTAT 58.584 29.630 0.00 0.00 0.00 2.12
1974 7774 7.771183 AGAAGACAAAAGCAAAAATCACACTA 58.229 30.769 0.00 0.00 0.00 2.74
1975 7775 6.633856 AGAAGACAAAAGCAAAAATCACACT 58.366 32.000 0.00 0.00 0.00 3.55
1976 7776 6.892310 AGAAGACAAAAGCAAAAATCACAC 57.108 33.333 0.00 0.00 0.00 3.82
1977 7777 7.903995 AAAGAAGACAAAAGCAAAAATCACA 57.096 28.000 0.00 0.00 0.00 3.58
1978 7778 8.442384 TCAAAAGAAGACAAAAGCAAAAATCAC 58.558 29.630 0.00 0.00 0.00 3.06
1979 7779 8.442384 GTCAAAAGAAGACAAAAGCAAAAATCA 58.558 29.630 0.00 0.00 36.06 2.57
1980 7780 8.442384 TGTCAAAAGAAGACAAAAGCAAAAATC 58.558 29.630 0.00 0.00 42.57 2.17
1981 7781 8.229811 GTGTCAAAAGAAGACAAAAGCAAAAAT 58.770 29.630 0.00 0.00 46.50 1.82
1982 7782 7.440856 AGTGTCAAAAGAAGACAAAAGCAAAAA 59.559 29.630 0.00 0.00 46.50 1.94
1983 7783 6.928492 AGTGTCAAAAGAAGACAAAAGCAAAA 59.072 30.769 0.00 0.00 46.50 2.44
1984 7784 6.454795 AGTGTCAAAAGAAGACAAAAGCAAA 58.545 32.000 0.00 0.00 46.50 3.68
1985 7785 6.024552 AGTGTCAAAAGAAGACAAAAGCAA 57.975 33.333 0.00 0.00 46.50 3.91
1986 7786 5.643379 AGTGTCAAAAGAAGACAAAAGCA 57.357 34.783 0.00 0.00 46.50 3.91
1987 7787 8.634475 AAATAGTGTCAAAAGAAGACAAAAGC 57.366 30.769 0.00 0.00 46.50 3.51
1993 7793 9.994432 CCATCATAAATAGTGTCAAAAGAAGAC 57.006 33.333 0.00 0.00 36.55 3.01
1994 7794 9.958180 TCCATCATAAATAGTGTCAAAAGAAGA 57.042 29.630 0.00 0.00 0.00 2.87
2001 7801 9.685276 AGACAAATCCATCATAAATAGTGTCAA 57.315 29.630 0.00 0.00 35.29 3.18
2002 7802 9.685276 AAGACAAATCCATCATAAATAGTGTCA 57.315 29.630 0.00 0.00 35.29 3.58
2028 7828 7.763356 TCGAAATACACAAGGAGAAACAAAAA 58.237 30.769 0.00 0.00 0.00 1.94
2029 7829 7.323049 TCGAAATACACAAGGAGAAACAAAA 57.677 32.000 0.00 0.00 0.00 2.44
2030 7830 6.928979 TCGAAATACACAAGGAGAAACAAA 57.071 33.333 0.00 0.00 0.00 2.83
2031 7831 7.504924 AATCGAAATACACAAGGAGAAACAA 57.495 32.000 0.00 0.00 0.00 2.83
2032 7832 7.504924 AAATCGAAATACACAAGGAGAAACA 57.495 32.000 0.00 0.00 0.00 2.83
2033 7833 7.268447 CGAAAATCGAAATACACAAGGAGAAAC 59.732 37.037 0.00 0.00 43.74 2.78
2034 7834 7.171848 TCGAAAATCGAAATACACAAGGAGAAA 59.828 33.333 0.00 0.00 46.90 2.52
2035 7835 6.647481 TCGAAAATCGAAATACACAAGGAGAA 59.353 34.615 0.00 0.00 46.90 2.87
2036 7836 6.160684 TCGAAAATCGAAATACACAAGGAGA 58.839 36.000 0.00 0.00 46.90 3.71
2037 7837 6.403333 TCGAAAATCGAAATACACAAGGAG 57.597 37.500 0.00 0.00 46.90 3.69
2068 7868 6.551601 ACACATATGTTGACAACCCCTAAAAA 59.448 34.615 15.59 0.00 34.46 1.94
2069 7869 6.071984 ACACATATGTTGACAACCCCTAAAA 58.928 36.000 15.59 0.00 34.46 1.52
2070 7870 5.636123 ACACATATGTTGACAACCCCTAAA 58.364 37.500 15.59 0.00 34.46 1.85
2071 7871 5.249780 ACACATATGTTGACAACCCCTAA 57.750 39.130 15.59 0.00 34.46 2.69
2072 7872 4.919774 ACACATATGTTGACAACCCCTA 57.080 40.909 15.59 5.52 34.46 3.53
2073 7873 3.806949 ACACATATGTTGACAACCCCT 57.193 42.857 15.59 3.49 34.46 4.79
2083 7883 8.339344 TCATGAATTCTCACAACACATATGTT 57.661 30.769 5.37 0.00 40.66 2.71
2084 7884 7.926674 TCATGAATTCTCACAACACATATGT 57.073 32.000 1.41 1.41 35.73 2.29
2085 7885 9.797556 AAATCATGAATTCTCACAACACATATG 57.202 29.630 7.05 0.00 33.30 1.78
2124 7924 9.766277 GCAAAACTCAAATTTAAACATGTCAAA 57.234 25.926 0.00 3.30 0.00 2.69
2125 7925 8.939929 TGCAAAACTCAAATTTAAACATGTCAA 58.060 25.926 0.00 0.00 0.00 3.18
2126 7926 8.484641 TGCAAAACTCAAATTTAAACATGTCA 57.515 26.923 0.00 0.00 0.00 3.58
2127 7927 9.424659 CTTGCAAAACTCAAATTTAAACATGTC 57.575 29.630 0.00 0.00 0.00 3.06
2128 7928 8.945057 ACTTGCAAAACTCAAATTTAAACATGT 58.055 25.926 0.00 0.00 0.00 3.21
2129 7929 9.771915 AACTTGCAAAACTCAAATTTAAACATG 57.228 25.926 0.00 0.00 0.00 3.21
2138 7938 9.630098 CATGATACTAACTTGCAAAACTCAAAT 57.370 29.630 0.00 0.00 0.00 2.32
2139 7939 8.081633 CCATGATACTAACTTGCAAAACTCAAA 58.918 33.333 0.00 0.00 0.00 2.69
2140 7940 7.230510 ACCATGATACTAACTTGCAAAACTCAA 59.769 33.333 0.00 0.00 0.00 3.02
2141 7941 6.714810 ACCATGATACTAACTTGCAAAACTCA 59.285 34.615 0.00 0.00 0.00 3.41
2142 7942 7.145932 ACCATGATACTAACTTGCAAAACTC 57.854 36.000 0.00 0.00 0.00 3.01
2143 7943 8.807948 ATACCATGATACTAACTTGCAAAACT 57.192 30.769 0.00 0.00 0.00 2.66
2144 7944 8.673711 TGATACCATGATACTAACTTGCAAAAC 58.326 33.333 0.00 0.00 0.00 2.43
2145 7945 8.800370 TGATACCATGATACTAACTTGCAAAA 57.200 30.769 0.00 0.00 0.00 2.44
2146 7946 8.978874 ATGATACCATGATACTAACTTGCAAA 57.021 30.769 0.00 0.00 0.00 3.68
2162 7962 4.796110 ACCAGCCTTTACATGATACCAT 57.204 40.909 0.00 0.00 0.00 3.55
2163 7963 5.368230 TGATACCAGCCTTTACATGATACCA 59.632 40.000 0.00 0.00 0.00 3.25
2164 7964 5.865085 TGATACCAGCCTTTACATGATACC 58.135 41.667 0.00 0.00 0.00 2.73
2165 7965 6.936900 ACATGATACCAGCCTTTACATGATAC 59.063 38.462 0.00 0.00 37.59 2.24
2166 7966 6.936335 CACATGATACCAGCCTTTACATGATA 59.064 38.462 0.00 0.00 37.59 2.15
2167 7967 5.766670 CACATGATACCAGCCTTTACATGAT 59.233 40.000 0.00 0.00 37.59 2.45
2168 7968 5.104569 TCACATGATACCAGCCTTTACATGA 60.105 40.000 0.00 0.00 37.59 3.07
2169 7969 5.125356 TCACATGATACCAGCCTTTACATG 58.875 41.667 0.00 0.00 39.27 3.21
2170 7970 5.372343 TCACATGATACCAGCCTTTACAT 57.628 39.130 0.00 0.00 0.00 2.29
2171 7971 4.835284 TCACATGATACCAGCCTTTACA 57.165 40.909 0.00 0.00 0.00 2.41
2172 7972 6.787085 GTATCACATGATACCAGCCTTTAC 57.213 41.667 17.70 0.00 46.87 2.01
2181 7981 9.150424 ATCCGAGGGAAAGTATCACATGATACC 62.150 44.444 22.63 11.43 44.84 2.73
2182 7982 6.295349 ATCCGAGGGAAAGTATCACATGATAC 60.295 42.308 19.95 19.95 44.51 2.24
2183 7983 5.144832 TCCGAGGGAAAGTATCACATGATA 58.855 41.667 0.00 0.00 36.05 2.15
2184 7984 3.967326 TCCGAGGGAAAGTATCACATGAT 59.033 43.478 0.00 0.00 38.51 2.45
2185 7985 3.371034 TCCGAGGGAAAGTATCACATGA 58.629 45.455 0.00 0.00 32.04 3.07
2186 7986 3.819564 TCCGAGGGAAAGTATCACATG 57.180 47.619 0.00 0.00 32.04 3.21
2187 7987 3.967326 TGATCCGAGGGAAAGTATCACAT 59.033 43.478 0.00 0.00 34.34 3.21
2188 7988 3.371034 TGATCCGAGGGAAAGTATCACA 58.629 45.455 0.00 0.00 34.34 3.58
2189 7989 4.608948 ATGATCCGAGGGAAAGTATCAC 57.391 45.455 0.00 0.00 34.34 3.06
2190 7990 7.417911 GCATATATGATCCGAGGGAAAGTATCA 60.418 40.741 17.10 0.00 34.34 2.15
2191 7991 6.926272 GCATATATGATCCGAGGGAAAGTATC 59.074 42.308 17.10 0.00 34.34 2.24
2192 7992 6.613271 AGCATATATGATCCGAGGGAAAGTAT 59.387 38.462 17.10 0.00 34.34 2.12
2193 7993 5.958380 AGCATATATGATCCGAGGGAAAGTA 59.042 40.000 17.10 0.00 34.34 2.24
2194 7994 4.780021 AGCATATATGATCCGAGGGAAAGT 59.220 41.667 17.10 0.00 34.34 2.66
2195 7995 5.350504 AGCATATATGATCCGAGGGAAAG 57.649 43.478 17.10 0.00 34.34 2.62
2196 7996 5.491070 CAAGCATATATGATCCGAGGGAAA 58.509 41.667 17.10 0.00 34.34 3.13
2197 7997 4.623886 GCAAGCATATATGATCCGAGGGAA 60.624 45.833 17.10 0.00 34.34 3.97
2198 7998 3.118629 GCAAGCATATATGATCCGAGGGA 60.119 47.826 17.10 0.00 35.55 4.20
2199 7999 3.201290 GCAAGCATATATGATCCGAGGG 58.799 50.000 17.10 0.00 0.00 4.30
2200 8000 3.865446 TGCAAGCATATATGATCCGAGG 58.135 45.455 17.10 0.36 0.00 4.63
2201 8001 5.220796 CCATTGCAAGCATATATGATCCGAG 60.221 44.000 17.10 3.05 0.00 4.63
2246 8046 5.104527 TGTTACCAGGATAATCAGTCCCAAG 60.105 44.000 0.00 0.00 36.36 3.61
2299 8099 6.933514 AACATAAACCCAATCATCCAACTT 57.066 33.333 0.00 0.00 0.00 2.66
2311 8111 6.999272 TGAAGCTAACTACAAACATAAACCCA 59.001 34.615 0.00 0.00 0.00 4.51
2419 8221 8.494347 TGCACTTGATTACAAAAATGTAAATGC 58.506 29.630 5.61 10.18 37.73 3.56
2433 8235 4.093556 GTCCTAGTTGCTGCACTTGATTAC 59.906 45.833 0.00 0.00 0.00 1.89
2452 8255 4.057432 CCGAATTTGCAAAATGTTGTCCT 58.943 39.130 17.19 0.00 37.06 3.85
2461 8264 7.974501 TGAACTTAGTTTACCGAATTTGCAAAA 59.025 29.630 17.19 0.00 0.00 2.44
2505 8316 8.088981 AGGTTAGCTTATAGTTTATCACCATCG 58.911 37.037 0.00 0.00 0.00 3.84
2579 8390 5.366186 ACTCTACTAACTCATCTCCGGTAGA 59.634 44.000 0.00 3.44 39.02 2.59
2644 8455 7.927092 GTCCCTCCAAAGTACAGATAACTTATC 59.073 40.741 0.00 0.99 36.17 1.75
2654 8465 3.771577 AACTGTCCCTCCAAAGTACAG 57.228 47.619 0.00 0.00 39.10 2.74
2678 8490 5.163281 ACAAGAAGCATCAGAGAGTCAAT 57.837 39.130 0.00 0.00 0.00 2.57
2784 8672 4.142004 ACCATAGGTCGATACAAACCACTC 60.142 45.833 0.00 0.00 38.06 3.51
2793 8681 6.145535 CCGTAAAAGTACCATAGGTCGATAC 58.854 44.000 0.00 0.00 37.09 2.24
2872 8767 7.176490 AGTCACTAACAGTTAGGAGACAGTAT 58.824 38.462 30.23 17.90 41.15 2.12
2914 8809 9.196552 GAAAAAGGTCAAATGGAAGACAATAAG 57.803 33.333 0.00 0.00 36.50 1.73
2943 8840 6.617131 TTGGCAACCATCAGTGTTTAACACT 61.617 40.000 23.25 23.25 46.50 3.55
2944 8841 4.440802 TTGGCAACCATCAGTGTTTAACAC 60.441 41.667 19.35 19.35 40.50 3.32
2983 8880 4.445452 AGGCTAATGTGCAACTTCATTG 57.555 40.909 9.80 3.01 41.69 2.82
2990 8887 2.683362 GGGTAGAAGGCTAATGTGCAAC 59.317 50.000 0.00 0.00 37.35 4.17
3008 8905 4.127171 CGAGAATTGGTCGATAAATGGGT 58.873 43.478 1.30 0.00 39.92 4.51
3046 8943 7.334858 TCATGTACATGCTACTTAATTGACCA 58.665 34.615 27.71 4.98 38.65 4.02
3049 8946 8.695456 TCTCTCATGTACATGCTACTTAATTGA 58.305 33.333 27.71 8.79 38.65 2.57
3124 10419 5.933187 TTACAAACTAATTGCGAGCTGAA 57.067 34.783 0.00 0.00 43.13 3.02
3152 10447 5.203060 AGATTGTAGAATTCGTAGCCTCC 57.797 43.478 0.00 0.00 0.00 4.30
3638 10935 6.391227 AGTACCACCAAAACTCAAGAAATG 57.609 37.500 0.00 0.00 0.00 2.32
3756 11053 2.824041 CAAGAATCCCCGGCACCG 60.824 66.667 1.02 1.02 39.44 4.94
3761 11058 1.000896 AAGCCACAAGAATCCCCGG 60.001 57.895 0.00 0.00 0.00 5.73
3837 11139 6.307800 GCTTTGAAATTTTAGCACGCTCATAA 59.692 34.615 13.01 0.00 33.88 1.90
3842 11144 3.976169 TGCTTTGAAATTTTAGCACGCT 58.024 36.364 15.38 0.00 38.61 5.07
3843 11145 4.631036 CATGCTTTGAAATTTTAGCACGC 58.369 39.130 19.35 8.11 45.39 5.34
3901 11207 6.018016 AGGAAGGCAAATTTTGTTTCGATTTG 60.018 34.615 10.65 1.90 41.41 2.32
3904 11210 5.213891 AGGAAGGCAAATTTTGTTTCGAT 57.786 34.783 10.65 5.48 31.55 3.59
3931 11237 9.378504 TGCATGTCCAAATTATCCCTAATAAAT 57.621 29.630 0.00 0.00 33.59 1.40
4340 11671 4.214545 CGGTTCACAACATGGTAAAAGCTA 59.785 41.667 0.00 0.00 0.00 3.32
4342 11673 3.003897 TCGGTTCACAACATGGTAAAAGC 59.996 43.478 0.00 0.00 0.00 3.51
4346 11677 4.280436 AGATCGGTTCACAACATGGTAA 57.720 40.909 0.00 0.00 0.00 2.85
4442 11778 6.327279 ACTACTTGCAAATTTACTGGGTTC 57.673 37.500 0.00 0.00 0.00 3.62
4626 12162 6.851222 AATATAATGTTGGCGAAGACTGAG 57.149 37.500 0.00 0.00 34.59 3.35
4635 12171 8.406172 AGTTTTTGCTAAATATAATGTTGGCG 57.594 30.769 0.00 0.00 34.25 5.69
5031 12596 3.953612 TGAGTTGTGGGAATATCATTGGC 59.046 43.478 0.00 0.00 0.00 4.52
5572 13138 2.814336 GCGGGATGAATTTGGATAGACC 59.186 50.000 0.00 0.00 39.54 3.85
5577 13143 1.496429 AGGAGCGGGATGAATTTGGAT 59.504 47.619 0.00 0.00 0.00 3.41
5649 13215 5.359194 ACAAGATGACAGTCCCGATAAAT 57.641 39.130 0.00 0.00 0.00 1.40
5684 13251 1.616865 CTGACTCCTTACGGTTCACCA 59.383 52.381 0.00 0.00 35.14 4.17
5739 13306 1.138859 CTCCAGATACCATCACCGCAA 59.861 52.381 0.00 0.00 0.00 4.85
5924 13491 7.461416 CGAAGAAGACACAAACAAAATGAACAC 60.461 37.037 0.00 0.00 0.00 3.32
5949 13516 6.293081 CCATGATACTCTAACAAAGAATGCCG 60.293 42.308 0.00 0.00 32.46 5.69
6070 15767 6.938030 ACCGTCTTACATTTTCCTTTACATCA 59.062 34.615 0.00 0.00 0.00 3.07
6118 15815 2.061028 CTTTGATTGAAACTTGCCGGC 58.939 47.619 22.73 22.73 0.00 6.13
6121 15818 2.472488 CGCACTTTGATTGAAACTTGCC 59.528 45.455 0.00 0.00 29.03 4.52
6150 15847 5.575606 GCTCACATACACGTACATACACTTT 59.424 40.000 0.00 0.00 0.00 2.66
6151 15848 5.100259 GCTCACATACACGTACATACACTT 58.900 41.667 0.00 0.00 0.00 3.16
6168 15865 2.725637 ACACAATGGCATATGCTCACA 58.274 42.857 26.12 16.48 41.70 3.58
6179 15876 5.175673 GCTTTTCTTAAGACAACACAATGGC 59.824 40.000 4.18 0.00 0.00 4.40
6181 15878 7.489113 ACTTGCTTTTCTTAAGACAACACAATG 59.511 33.333 4.18 7.22 0.00 2.82
6231 15928 0.108615 CCTGGTGCTCGTAGTGGAAG 60.109 60.000 0.00 0.00 0.00 3.46
6251 15948 3.738745 ATGGGGAAGAATGCCGGCC 62.739 63.158 26.77 8.84 38.08 6.13
6305 16003 2.183046 GGCACGAGGCTCTGAGTC 59.817 66.667 13.50 0.00 44.01 3.36
6333 16031 2.981859 GACCCAAGTCGACCATGTAT 57.018 50.000 13.01 2.12 32.18 2.29
6352 16050 1.735018 TGTTCCATGCATTACGGTTCG 59.265 47.619 0.00 0.00 0.00 3.95
6366 16064 1.434513 ATTGCCTGGAGGGTGTTCCA 61.435 55.000 0.00 0.00 44.84 3.53
6378 16076 1.196808 GTTGTCACACCGTATTGCCTG 59.803 52.381 0.00 0.00 0.00 4.85
6409 16107 3.667282 CGTGTCGTGGTCCGGACT 61.667 66.667 32.52 0.00 37.11 3.85
6453 16151 4.994201 GTGCCACGACGACGAGCA 62.994 66.667 20.24 20.24 44.43 4.26
6458 16156 4.651008 TTCCCGTGCCACGACGAC 62.651 66.667 20.57 0.00 46.05 4.34
6464 16162 0.179000 ATCATCTCTTCCCGTGCCAC 59.821 55.000 0.00 0.00 0.00 5.01
6470 16168 2.196749 CGTCACAATCATCTCTTCCCG 58.803 52.381 0.00 0.00 0.00 5.14
6474 16172 2.744202 GCCAACGTCACAATCATCTCTT 59.256 45.455 0.00 0.00 0.00 2.85
6477 16175 1.271325 TGGCCAACGTCACAATCATCT 60.271 47.619 0.61 0.00 0.00 2.90
6566 16280 1.648504 CATTTTCGGGGGAGTCGTAC 58.351 55.000 0.00 0.00 0.00 3.67
6567 16281 0.538118 CCATTTTCGGGGGAGTCGTA 59.462 55.000 0.00 0.00 0.00 3.43
6582 16296 3.762247 GGGCGCATGCACACCATT 61.762 61.111 19.57 0.00 46.60 3.16
6594 16308 0.319813 AGTCAAATGCTTTTGGGCGC 60.320 50.000 21.07 0.00 42.10 6.53
6609 16323 1.003839 GTTGCGGATGTGGGAGTCA 60.004 57.895 0.00 0.00 0.00 3.41
6611 16325 2.047274 CGTTGCGGATGTGGGAGT 60.047 61.111 0.00 0.00 0.00 3.85
6619 16333 0.872388 GGAAAGACAACGTTGCGGAT 59.128 50.000 27.61 12.21 0.00 4.18
6620 16334 0.462225 TGGAAAGACAACGTTGCGGA 60.462 50.000 27.61 2.63 0.00 5.54
6621 16335 0.316689 GTGGAAAGACAACGTTGCGG 60.317 55.000 27.61 5.31 0.00 5.69
6623 16337 0.736053 TGGTGGAAAGACAACGTTGC 59.264 50.000 27.61 19.38 0.00 4.17
6624 16338 1.333619 CCTGGTGGAAAGACAACGTTG 59.666 52.381 26.20 26.20 34.57 4.10
6658 16372 1.133598 CTCGCCCGTGTACTTGATGTA 59.866 52.381 0.00 0.00 0.00 2.29
6661 16375 0.172803 GTCTCGCCCGTGTACTTGAT 59.827 55.000 0.00 0.00 0.00 2.57
6745 16462 0.173935 CGGCCATGAACGGTGTACTA 59.826 55.000 2.24 0.00 0.00 1.82
6746 16463 1.079405 CGGCCATGAACGGTGTACT 60.079 57.895 2.24 0.00 0.00 2.73
6747 16464 1.079681 TCGGCCATGAACGGTGTAC 60.080 57.895 2.24 0.00 0.00 2.90
6752 16469 0.390603 TTGTAGTCGGCCATGAACGG 60.391 55.000 2.24 0.00 0.00 4.44
6770 16487 9.474313 TTTACAGAGGGAGTATTTTGCATTATT 57.526 29.630 0.00 0.00 0.00 1.40
6795 16512 7.948034 AGTAGCAGTGATCTAAGAAGTACTT 57.052 36.000 8.13 8.13 42.04 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.