Multiple sequence alignment - TraesCS2A01G082500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G082500 chr2A 100.000 3981 0 0 1 3981 37268466 37272446 0.000000e+00 7352.0
1 TraesCS2A01G082500 chr2A 86.910 741 69 15 956 1676 37276745 37276013 0.000000e+00 806.0
2 TraesCS2A01G082500 chr2A 89.384 292 17 7 2253 2539 37275495 37275213 4.890000e-94 355.0
3 TraesCS2A01G082500 chr2D 88.458 2244 132 66 587 2773 34329220 34331393 0.000000e+00 2591.0
4 TraesCS2A01G082500 chr2D 87.957 739 58 14 956 1671 34343847 34343117 0.000000e+00 843.0
5 TraesCS2A01G082500 chr2D 89.825 285 16 6 2251 2531 34342584 34342309 1.760000e-93 353.0
6 TraesCS2A01G082500 chr2D 78.170 623 62 39 18 585 34328569 34329172 2.970000e-86 329.0
7 TraesCS2A01G082500 chr2D 91.525 177 15 0 2819 2995 34331659 34331835 1.110000e-60 244.0
8 TraesCS2A01G082500 chr2D 91.398 93 1 3 22 109 34320214 34320304 1.940000e-23 121.0
9 TraesCS2A01G082500 chr2B 84.922 2109 162 79 1 2025 56898500 56900536 0.000000e+00 1989.0
10 TraesCS2A01G082500 chr2B 94.531 1024 43 8 2055 3075 56900611 56901624 0.000000e+00 1568.0
11 TraesCS2A01G082500 chr2B 87.854 741 62 15 956 1676 56917708 56916976 0.000000e+00 845.0
12 TraesCS2A01G082500 chr2B 92.505 547 39 2 3434 3980 56902314 56902858 0.000000e+00 782.0
13 TraesCS2A01G082500 chr2B 90.278 288 15 6 2253 2536 56916503 56916225 8.130000e-97 364.0
14 TraesCS2A01G082500 chr2B 85.915 142 18 2 448 589 48240586 48240725 2.480000e-32 150.0
15 TraesCS2A01G082500 chr2B 84.286 70 6 3 586 650 64328772 64328841 3.320000e-06 63.9
16 TraesCS2A01G082500 chr7A 77.577 388 39 27 226 589 645688798 645688435 1.460000e-44 191.0
17 TraesCS2A01G082500 chr7A 76.980 404 43 28 226 604 387940953 387940575 6.790000e-43 185.0
18 TraesCS2A01G082500 chr7A 79.444 180 24 8 164 341 247279921 247280089 9.040000e-22 115.0
19 TraesCS2A01G082500 chr7A 97.436 39 1 0 588 626 387940550 387940512 2.570000e-07 67.6
20 TraesCS2A01G082500 chr3A 76.904 394 42 29 236 604 561456347 561455978 1.140000e-40 178.0
21 TraesCS2A01G082500 chr3A 97.561 41 1 0 586 626 561455955 561455915 1.980000e-08 71.3
22 TraesCS2A01G082500 chr5D 86.792 159 17 4 448 604 395205644 395205488 1.470000e-39 174.0
23 TraesCS2A01G082500 chr5A 88.571 140 16 0 450 589 25201366 25201505 1.900000e-38 171.0
24 TraesCS2A01G082500 chr5A 88.542 96 11 0 226 321 55977221 55977126 2.510000e-22 117.0
25 TraesCS2A01G082500 chr5A 87.037 108 6 4 4 104 578047143 578047249 9.040000e-22 115.0
26 TraesCS2A01G082500 chr5A 97.436 39 1 0 588 626 25201545 25201583 2.570000e-07 67.6
27 TraesCS2A01G082500 chr6A 85.443 158 21 2 448 604 615787893 615787737 3.180000e-36 163.0
28 TraesCS2A01G082500 chr6A 97.436 39 1 0 588 626 615787712 615787674 2.570000e-07 67.6
29 TraesCS2A01G082500 chr7B 89.565 115 5 3 1 109 680260091 680260204 5.360000e-29 139.0
30 TraesCS2A01G082500 chr7B 93.220 59 4 0 250 308 680260297 680260355 1.970000e-13 87.9
31 TraesCS2A01G082500 chrUn 88.696 115 6 3 1 109 401612341 401612454 2.500000e-27 134.0
32 TraesCS2A01G082500 chrUn 79.444 180 24 8 164 341 363163890 363163722 9.040000e-22 115.0
33 TraesCS2A01G082500 chrUn 93.220 59 4 0 250 308 401612547 401612605 1.970000e-13 87.9
34 TraesCS2A01G082500 chr1A 89.796 98 2 4 14 106 292498710 292498616 6.990000e-23 119.0
35 TraesCS2A01G082500 chr1A 94.872 39 2 0 588 626 329711589 329711627 1.190000e-05 62.1
36 TraesCS2A01G082500 chr7D 91.765 85 1 2 25 104 58626388 58626471 3.250000e-21 113.0
37 TraesCS2A01G082500 chr7D 85.088 114 9 3 1 107 601079939 601080051 4.210000e-20 110.0
38 TraesCS2A01G082500 chr7D 91.250 80 7 0 242 321 601080194 601080273 4.210000e-20 110.0
39 TraesCS2A01G082500 chr5B 92.000 50 4 0 260 309 10310040 10310089 1.980000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G082500 chr2A 37268466 37272446 3980 False 7352.000000 7352 100.000000 1 3981 1 chr2A.!!$F1 3980
1 TraesCS2A01G082500 chr2A 37275213 37276745 1532 True 580.500000 806 88.147000 956 2539 2 chr2A.!!$R1 1583
2 TraesCS2A01G082500 chr2D 34328569 34331835 3266 False 1054.666667 2591 86.051000 18 2995 3 chr2D.!!$F2 2977
3 TraesCS2A01G082500 chr2D 34342309 34343847 1538 True 598.000000 843 88.891000 956 2531 2 chr2D.!!$R1 1575
4 TraesCS2A01G082500 chr2B 56898500 56902858 4358 False 1446.333333 1989 90.652667 1 3980 3 chr2B.!!$F3 3979
5 TraesCS2A01G082500 chr2B 56916225 56917708 1483 True 604.500000 845 89.066000 956 2536 2 chr2B.!!$R1 1580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 654 0.03309 AGGAGGTCGACGGACAAAAC 59.967 55.0 9.92 0.0 45.28 2.43 F
1780 1975 0.10741 CTTATTAGCACCACCCGGCA 60.107 55.0 0.00 0.0 34.57 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2108 0.039764 TCCTCAGACTCCACCGACAT 59.960 55.0 0.00 0.0 0.0 3.06 R
3260 3924 0.103026 TCGCCGGTGAATGAGATCAG 59.897 55.0 17.09 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 127 1.072266 ATCCCCAAGTGGTGCTAACA 58.928 50.000 0.00 0.00 0.00 2.41
118 128 0.847373 TCCCCAAGTGGTGCTAACAA 59.153 50.000 0.00 0.00 0.00 2.83
122 132 3.091545 CCCAAGTGGTGCTAACAATGAT 58.908 45.455 0.00 0.00 0.00 2.45
123 133 3.119388 CCCAAGTGGTGCTAACAATGATG 60.119 47.826 0.00 0.00 0.00 3.07
134 144 5.006649 TGCTAACAATGATGCACGAATCTAC 59.993 40.000 0.00 0.00 0.00 2.59
180 206 1.630369 AGGCTATTTCTGCAGGACACA 59.370 47.619 15.13 0.00 0.00 3.72
191 217 3.565307 TGCAGGACACAGAAAGGAAAAT 58.435 40.909 0.00 0.00 0.00 1.82
200 226 7.436376 GGACACAGAAAGGAAAATTTCTTCTTG 59.564 37.037 5.65 10.27 45.10 3.02
213 239 1.151668 CTTCTTGTGCTTCCCGTCAG 58.848 55.000 0.00 0.00 0.00 3.51
214 240 0.884704 TTCTTGTGCTTCCCGTCAGC 60.885 55.000 0.00 0.00 37.82 4.26
215 241 2.281484 TTGTGCTTCCCGTCAGCC 60.281 61.111 0.00 0.00 36.33 4.85
216 242 3.842925 TTGTGCTTCCCGTCAGCCC 62.843 63.158 0.00 0.00 36.33 5.19
217 243 4.021925 GTGCTTCCCGTCAGCCCT 62.022 66.667 0.00 0.00 36.33 5.19
218 244 3.706373 TGCTTCCCGTCAGCCCTC 61.706 66.667 0.00 0.00 36.33 4.30
219 245 3.706373 GCTTCCCGTCAGCCCTCA 61.706 66.667 0.00 0.00 0.00 3.86
220 246 3.036429 GCTTCCCGTCAGCCCTCAT 62.036 63.158 0.00 0.00 0.00 2.90
257 283 5.295292 ACTGTATTGTTGCTGCTGATATGTC 59.705 40.000 0.00 0.00 0.00 3.06
308 334 2.159014 TGGTTCATTCGATAGGGAACGG 60.159 50.000 10.74 0.00 40.44 4.44
341 370 1.662629 CACGTGTGATGCCAATCTCTC 59.337 52.381 7.58 0.00 33.61 3.20
350 379 3.376218 CCAATCTCTCCTCTTGGCG 57.624 57.895 0.00 0.00 33.59 5.69
354 383 1.110442 ATCTCTCCTCTTGGCGTCAG 58.890 55.000 0.00 0.00 0.00 3.51
355 384 0.967887 TCTCTCCTCTTGGCGTCAGG 60.968 60.000 0.00 0.00 0.00 3.86
377 406 4.514441 GGTGAAGATGCCAATGTCTATCTG 59.486 45.833 0.00 0.00 30.77 2.90
380 409 5.129980 TGAAGATGCCAATGTCTATCTGTCT 59.870 40.000 0.00 0.00 30.77 3.41
388 417 5.587443 CCAATGTCTATCTGTCTGCATGAAA 59.413 40.000 0.00 0.00 0.00 2.69
389 418 6.262496 CCAATGTCTATCTGTCTGCATGAAAT 59.738 38.462 0.00 0.00 0.00 2.17
391 420 8.833493 CAATGTCTATCTGTCTGCATGAAATAA 58.167 33.333 0.00 0.00 0.00 1.40
392 421 8.969260 ATGTCTATCTGTCTGCATGAAATAAA 57.031 30.769 0.00 0.00 0.00 1.40
394 423 9.399797 TGTCTATCTGTCTGCATGAAATAAATT 57.600 29.630 0.00 0.00 0.00 1.82
398 427 6.327154 TCTGTCTGCATGAAATAAATTGCTG 58.673 36.000 0.00 0.00 36.10 4.41
399 428 6.151480 TCTGTCTGCATGAAATAAATTGCTGA 59.849 34.615 0.00 0.00 39.65 4.26
400 429 6.327154 TGTCTGCATGAAATAAATTGCTGAG 58.673 36.000 0.00 0.00 41.61 3.35
407 445 8.965172 GCATGAAATAAATTGCTGAGTGAATAG 58.035 33.333 0.00 0.00 32.41 1.73
408 446 8.965172 CATGAAATAAATTGCTGAGTGAATAGC 58.035 33.333 0.00 0.00 40.29 2.97
430 468 4.930405 GCTTCCTTTCTGTAACAGGAGTAC 59.070 45.833 0.00 0.00 38.00 2.73
431 469 4.778534 TCCTTTCTGTAACAGGAGTACG 57.221 45.455 0.00 0.00 32.61 3.67
432 470 4.147321 TCCTTTCTGTAACAGGAGTACGT 58.853 43.478 0.00 0.00 32.61 3.57
433 474 5.316167 TCCTTTCTGTAACAGGAGTACGTA 58.684 41.667 0.00 0.00 32.61 3.57
434 475 5.182001 TCCTTTCTGTAACAGGAGTACGTAC 59.818 44.000 18.10 18.10 32.61 3.67
448 489 5.625921 AGTACGTACTCCAGAAGAAGAAC 57.374 43.478 22.45 0.00 0.00 3.01
449 490 3.938289 ACGTACTCCAGAAGAAGAACC 57.062 47.619 0.00 0.00 0.00 3.62
450 491 2.228343 ACGTACTCCAGAAGAAGAACCG 59.772 50.000 0.00 0.00 0.00 4.44
451 492 2.486982 CGTACTCCAGAAGAAGAACCGA 59.513 50.000 0.00 0.00 0.00 4.69
452 493 3.670091 CGTACTCCAGAAGAAGAACCGAC 60.670 52.174 0.00 0.00 0.00 4.79
453 494 1.269998 ACTCCAGAAGAAGAACCGACG 59.730 52.381 0.00 0.00 0.00 5.12
456 521 1.000607 CCAGAAGAAGAACCGACGACA 60.001 52.381 0.00 0.00 0.00 4.35
496 561 2.592194 CATTGATTGCAGACACAGTGC 58.408 47.619 0.00 0.00 41.59 4.40
500 565 3.755526 TTGCAGACACAGTGCCGCT 62.756 57.895 0.00 0.00 40.43 5.52
504 569 2.809601 GACACAGTGCCGCTACCG 60.810 66.667 0.00 0.00 0.00 4.02
555 620 1.153168 CTGATGGCCAAGTACCCCG 60.153 63.158 10.96 0.00 0.00 5.73
585 654 0.033090 AGGAGGTCGACGGACAAAAC 59.967 55.000 9.92 0.00 45.28 2.43
615 730 1.310933 GCGGGAGACGGTGACTAGAA 61.311 60.000 0.00 0.00 44.51 2.10
620 735 0.456221 AGACGGTGACTAGAATGGCG 59.544 55.000 0.00 0.00 0.00 5.69
645 760 1.410517 CCTCGCATCACCATCTACTGT 59.589 52.381 0.00 0.00 0.00 3.55
691 815 8.052141 TGTGATTAAACATACATTCATCCCAGA 58.948 33.333 0.00 0.00 0.00 3.86
698 822 8.821686 AACATACATTCATCCCAGATAAAACA 57.178 30.769 0.00 0.00 0.00 2.83
706 830 6.351711 TCATCCCAGATAAAACAGACAGATG 58.648 40.000 0.00 0.00 0.00 2.90
728 853 5.985781 TGAACTCGTTTTCTGCTATGAAAC 58.014 37.500 0.00 0.00 35.91 2.78
777 902 0.247185 AAAAATGGGATGTGCAGCGG 59.753 50.000 0.00 0.00 0.00 5.52
794 919 3.760035 GCCGCTCGGAGGTCTGAA 61.760 66.667 13.11 0.00 37.50 3.02
818 943 4.973055 GTGCCGGCCACGTGTACA 62.973 66.667 26.77 0.00 38.78 2.90
848 973 0.313043 GATTTGGCCGATGCATCCAG 59.687 55.000 20.87 13.43 40.13 3.86
852 977 2.596631 GCCGATGCATCCAGCCAT 60.597 61.111 20.87 0.00 44.83 4.40
853 978 2.623915 GCCGATGCATCCAGCCATC 61.624 63.158 20.87 0.00 44.83 3.51
854 979 1.970114 CCGATGCATCCAGCCATCC 60.970 63.158 20.87 0.00 44.83 3.51
855 980 1.228033 CGATGCATCCAGCCATCCA 60.228 57.895 20.87 0.00 44.83 3.41
911 1037 0.477597 TTCCCAGTTCCCACCCAGAT 60.478 55.000 0.00 0.00 0.00 2.90
912 1038 0.419865 TCCCAGTTCCCACCCAGATA 59.580 55.000 0.00 0.00 0.00 1.98
913 1039 1.010793 TCCCAGTTCCCACCCAGATAT 59.989 52.381 0.00 0.00 0.00 1.63
938 1064 2.261361 CACCCGATCACACTCGCA 59.739 61.111 0.00 0.00 37.33 5.10
981 1107 3.810310 ACACTCATCACTAGCTAAGCC 57.190 47.619 0.00 0.00 0.00 4.35
982 1108 2.432510 ACACTCATCACTAGCTAAGCCC 59.567 50.000 0.00 0.00 0.00 5.19
983 1109 1.683917 ACTCATCACTAGCTAAGCCCG 59.316 52.381 0.00 0.00 0.00 6.13
985 1111 0.601311 CATCACTAGCTAAGCCCGCC 60.601 60.000 0.00 0.00 0.00 6.13
986 1112 2.088674 ATCACTAGCTAAGCCCGCCG 62.089 60.000 0.00 0.00 0.00 6.46
1090 1224 1.910722 GCCTCCATCTGCTTCCTCA 59.089 57.895 0.00 0.00 0.00 3.86
1500 1652 1.389609 CGTACCGGCACCTGACCTAT 61.390 60.000 0.00 0.00 0.00 2.57
1731 1926 0.399075 AGCCATCGGATCATGCATCA 59.601 50.000 0.00 0.00 32.33 3.07
1765 1960 3.999046 TCATCAGCGTGCATGATCTTAT 58.001 40.909 10.93 0.00 35.20 1.73
1766 1961 4.383173 TCATCAGCGTGCATGATCTTATT 58.617 39.130 10.93 0.00 35.20 1.40
1768 1963 5.636543 TCATCAGCGTGCATGATCTTATTAG 59.363 40.000 10.93 0.00 35.20 1.73
1769 1964 3.742882 TCAGCGTGCATGATCTTATTAGC 59.257 43.478 10.93 0.00 0.00 3.09
1776 1971 3.503748 GCATGATCTTATTAGCACCACCC 59.496 47.826 0.00 0.00 0.00 4.61
1777 1972 3.469008 TGATCTTATTAGCACCACCCG 57.531 47.619 0.00 0.00 0.00 5.28
1778 1973 2.104111 TGATCTTATTAGCACCACCCGG 59.896 50.000 0.00 0.00 38.77 5.73
1779 1974 0.179468 TCTTATTAGCACCACCCGGC 59.821 55.000 0.00 0.00 34.57 6.13
1780 1975 0.107410 CTTATTAGCACCACCCGGCA 60.107 55.000 0.00 0.00 34.57 5.69
1781 1976 0.548989 TTATTAGCACCACCCGGCAT 59.451 50.000 0.00 0.00 34.57 4.40
1782 1977 0.548989 TATTAGCACCACCCGGCATT 59.451 50.000 0.00 0.00 34.57 3.56
1785 1980 1.554583 TAGCACCACCCGGCATTACA 61.555 55.000 0.00 0.00 34.57 2.41
1786 1981 1.974343 GCACCACCCGGCATTACAA 60.974 57.895 0.00 0.00 34.57 2.41
1787 1982 1.528292 GCACCACCCGGCATTACAAA 61.528 55.000 0.00 0.00 34.57 2.83
1788 1983 0.242555 CACCACCCGGCATTACAAAC 59.757 55.000 0.00 0.00 34.57 2.93
1789 1984 0.178987 ACCACCCGGCATTACAAACA 60.179 50.000 0.00 0.00 34.57 2.83
1834 2029 2.885266 AGCTGGATGCATGATGTTGATC 59.115 45.455 2.46 0.00 45.94 2.92
1835 2030 2.885266 GCTGGATGCATGATGTTGATCT 59.115 45.455 2.46 0.00 42.31 2.75
1837 2032 4.793028 GCTGGATGCATGATGTTGATCTTG 60.793 45.833 2.46 0.00 42.31 3.02
1844 2039 3.497297 TGATGTTGATCTTGCACATGC 57.503 42.857 0.00 0.00 42.50 4.06
1845 2040 3.086282 TGATGTTGATCTTGCACATGCT 58.914 40.909 5.31 0.00 42.66 3.79
1847 2042 3.564235 TGTTGATCTTGCACATGCTTC 57.436 42.857 5.31 0.00 42.66 3.86
1848 2043 2.095617 TGTTGATCTTGCACATGCTTCG 60.096 45.455 5.31 0.00 42.66 3.79
1869 2108 0.753867 TGTAGTGAGTGTTTGGCCGA 59.246 50.000 0.00 0.00 0.00 5.54
1890 2129 0.457851 GTCGGTGGAGTCTGAGGATG 59.542 60.000 0.00 0.00 0.00 3.51
1898 2146 3.963374 TGGAGTCTGAGGATGGATTAGTG 59.037 47.826 0.00 0.00 0.00 2.74
1921 2169 6.095440 GTGGATGGTTGACAAGCAGTTAATAT 59.905 38.462 23.09 6.65 42.84 1.28
1926 2192 4.598406 TGACAAGCAGTTAATATGCACG 57.402 40.909 15.47 9.42 46.31 5.34
1927 2193 4.249661 TGACAAGCAGTTAATATGCACGA 58.750 39.130 15.47 0.00 46.31 4.35
1929 2195 4.503910 ACAAGCAGTTAATATGCACGAGA 58.496 39.130 15.47 0.00 46.31 4.04
1930 2196 4.568359 ACAAGCAGTTAATATGCACGAGAG 59.432 41.667 15.47 4.09 46.31 3.20
1931 2197 4.655762 AGCAGTTAATATGCACGAGAGA 57.344 40.909 15.47 0.00 46.31 3.10
1942 2208 1.065401 GCACGAGAGATGAGACTGGAG 59.935 57.143 0.00 0.00 0.00 3.86
1968 2234 3.680620 ATGGTGACCATGGCGACCG 62.681 63.158 17.79 0.00 43.39 4.79
1993 2286 1.385743 GTAGTGTACGACGCAGCTTTG 59.614 52.381 0.00 0.00 0.00 2.77
1994 2287 0.031585 AGTGTACGACGCAGCTTTGA 59.968 50.000 0.00 0.00 0.00 2.69
1995 2288 0.856641 GTGTACGACGCAGCTTTGAA 59.143 50.000 0.00 0.00 0.00 2.69
1996 2289 1.459592 GTGTACGACGCAGCTTTGAAT 59.540 47.619 0.00 0.00 0.00 2.57
1997 2290 1.724623 TGTACGACGCAGCTTTGAATC 59.275 47.619 0.00 0.00 0.00 2.52
2025 2322 2.370189 ACCAGGAATAGCTAGATGGCAC 59.630 50.000 13.41 0.00 34.17 5.01
2039 2346 1.447838 GGCACGACGGATGTCACAT 60.448 57.895 0.00 0.00 45.80 3.21
2040 2347 1.019278 GGCACGACGGATGTCACATT 61.019 55.000 0.00 0.00 45.80 2.71
2042 2349 1.708822 CACGACGGATGTCACATTGA 58.291 50.000 0.00 0.00 45.80 2.57
2043 2350 1.655597 CACGACGGATGTCACATTGAG 59.344 52.381 0.00 0.00 45.80 3.02
2044 2351 0.647410 CGACGGATGTCACATTGAGC 59.353 55.000 0.00 0.00 45.80 4.26
2045 2352 1.725641 GACGGATGTCACATTGAGCA 58.274 50.000 0.00 0.00 44.82 4.26
2046 2353 1.394917 GACGGATGTCACATTGAGCAC 59.605 52.381 0.00 0.00 44.82 4.40
2047 2354 1.002430 ACGGATGTCACATTGAGCACT 59.998 47.619 0.00 0.00 0.00 4.40
2048 2355 2.233676 ACGGATGTCACATTGAGCACTA 59.766 45.455 0.00 0.00 0.00 2.74
2049 2356 2.862536 CGGATGTCACATTGAGCACTAG 59.137 50.000 0.00 0.00 0.00 2.57
2050 2357 3.677148 CGGATGTCACATTGAGCACTAGT 60.677 47.826 0.00 0.00 0.00 2.57
2076 2433 2.512286 ATGTGCGGACCATGCTCG 60.512 61.111 4.04 0.00 0.00 5.03
2081 2438 3.842923 CGGACCATGCTCGGCTCT 61.843 66.667 0.00 0.00 0.00 4.09
2082 2439 2.107953 GGACCATGCTCGGCTCTC 59.892 66.667 0.00 0.00 0.00 3.20
2083 2440 2.279120 GACCATGCTCGGCTCTCG 60.279 66.667 0.00 0.00 40.90 4.04
2084 2441 2.755876 ACCATGCTCGGCTCTCGA 60.756 61.111 0.00 0.00 46.77 4.04
2091 2448 3.114650 TCGGCTCTCGATGCTCTG 58.885 61.111 9.81 2.46 43.74 3.35
2092 2449 2.657944 CGGCTCTCGATGCTCTGC 60.658 66.667 9.81 0.00 42.43 4.26
2093 2450 2.280052 GGCTCTCGATGCTCTGCC 60.280 66.667 9.81 0.00 0.00 4.85
2094 2451 2.795110 GGCTCTCGATGCTCTGCCT 61.795 63.158 9.81 0.00 37.58 4.75
2388 2786 4.760047 CTGGTTCTCCACGGCCGG 62.760 72.222 31.76 18.27 39.03 6.13
2540 2941 2.761208 GCCTCACAGGTACAGTACTCAT 59.239 50.000 10.62 0.00 37.80 2.90
2542 2943 4.401519 GCCTCACAGGTACAGTACTCATTA 59.598 45.833 10.62 0.00 37.80 1.90
2543 2944 5.679127 GCCTCACAGGTACAGTACTCATTAC 60.679 48.000 10.62 0.00 37.80 1.89
2544 2945 5.652891 CCTCACAGGTACAGTACTCATTACT 59.347 44.000 10.62 0.00 42.23 2.24
2546 2947 6.243148 TCACAGGTACAGTACTCATTACTCA 58.757 40.000 10.62 0.00 39.18 3.41
2547 2948 6.717997 TCACAGGTACAGTACTCATTACTCAA 59.282 38.462 10.62 0.00 39.18 3.02
2548 2949 7.396339 TCACAGGTACAGTACTCATTACTCAAT 59.604 37.037 10.62 0.00 39.18 2.57
2562 2963 8.718102 TCATTACTCAATTAACTAGCTTCCAC 57.282 34.615 0.00 0.00 0.00 4.02
2575 2976 1.132453 GCTTCCACATTTTAGTCCGCC 59.868 52.381 0.00 0.00 0.00 6.13
2785 3186 1.135660 TCTTCACTTCACTAGAGCGCG 60.136 52.381 0.00 0.00 0.00 6.86
2815 3216 4.901250 TGATTAGTCAGCAGTATCATGGGA 59.099 41.667 0.00 0.00 0.00 4.37
2816 3217 5.545335 TGATTAGTCAGCAGTATCATGGGAT 59.455 40.000 0.00 0.00 37.55 3.85
2817 3218 5.474578 TTAGTCAGCAGTATCATGGGATC 57.525 43.478 0.00 0.00 34.89 3.36
2944 3565 2.584608 CGGGATTGCTCGGAGGTT 59.415 61.111 7.20 0.00 33.32 3.50
2956 3577 1.298667 GGAGGTTATGGTGTGGCGT 59.701 57.895 0.00 0.00 0.00 5.68
2959 3580 2.043980 GGTTATGGTGTGGCGTGGG 61.044 63.158 0.00 0.00 0.00 4.61
2984 3605 4.894784 TCAGTTCCTAGCAACCTAGTTTG 58.105 43.478 0.00 0.00 39.56 2.93
3022 3643 2.029290 AGTGACTTGTGGTATCACGGAC 60.029 50.000 0.81 0.00 45.97 4.79
3045 3666 9.535878 GGACCAACAAATTTAGAAATACAACAA 57.464 29.630 0.00 0.00 0.00 2.83
3095 3756 8.561738 AATACTTGTATTACTCAACCACCAAG 57.438 34.615 4.39 0.00 35.40 3.61
3110 3771 4.041567 ACCACCAAGTCATTACAGTCATCA 59.958 41.667 0.00 0.00 0.00 3.07
3112 3773 4.996758 CACCAAGTCATTACAGTCATCACA 59.003 41.667 0.00 0.00 0.00 3.58
3131 3792 7.714813 TCATCACACACTATCTTCAAAACTTCA 59.285 33.333 0.00 0.00 0.00 3.02
3132 3793 7.482654 TCACACACTATCTTCAAAACTTCAG 57.517 36.000 0.00 0.00 0.00 3.02
3133 3794 7.047891 TCACACACTATCTTCAAAACTTCAGT 58.952 34.615 0.00 0.00 0.00 3.41
3135 3796 6.260936 ACACACTATCTTCAAAACTTCAGTGG 59.739 38.462 0.00 0.00 37.15 4.00
3136 3797 6.483307 CACACTATCTTCAAAACTTCAGTGGA 59.517 38.462 0.00 0.00 37.15 4.02
3137 3798 6.483640 ACACTATCTTCAAAACTTCAGTGGAC 59.516 38.462 0.00 0.00 37.15 4.02
3138 3799 5.998363 ACTATCTTCAAAACTTCAGTGGACC 59.002 40.000 0.00 0.00 0.00 4.46
3139 3800 4.503714 TCTTCAAAACTTCAGTGGACCT 57.496 40.909 0.00 0.00 0.00 3.85
3149 3812 0.179020 CAGTGGACCTGAACCAAGCA 60.179 55.000 0.00 0.00 44.49 3.91
3150 3813 0.550914 AGTGGACCTGAACCAAGCAA 59.449 50.000 0.00 0.00 39.22 3.91
3165 3828 0.877071 AGCAAAGTCATTGTCCTGCG 59.123 50.000 0.00 0.00 41.32 5.18
3168 3831 2.730090 GCAAAGTCATTGTCCTGCGATG 60.730 50.000 0.00 0.00 41.32 3.84
3178 3841 1.476891 GTCCTGCGATGAACTCTACCA 59.523 52.381 0.00 0.00 0.00 3.25
3179 3842 1.751351 TCCTGCGATGAACTCTACCAG 59.249 52.381 0.00 0.00 0.00 4.00
3202 3865 7.753132 CCAGAACTAGCTAAATTATCTCTAGCG 59.247 40.741 0.00 0.00 42.34 4.26
3246 3910 9.877178 AAAGTGAGTAATGGAAGTATGTCTAAG 57.123 33.333 0.00 0.00 0.00 2.18
3249 3913 7.921745 GTGAGTAATGGAAGTATGTCTAAGACC 59.078 40.741 0.00 0.00 0.00 3.85
3252 3916 6.831664 AATGGAAGTATGTCTAAGACCCAT 57.168 37.500 0.00 0.00 33.73 4.00
3260 3924 8.588290 AGTATGTCTAAGACCCATGAGATATC 57.412 38.462 0.00 0.00 0.00 1.63
3262 3926 6.907853 TGTCTAAGACCCATGAGATATCTG 57.092 41.667 10.74 0.00 0.00 2.90
3275 3939 6.264841 TGAGATATCTGATCTCATTCACCG 57.735 41.667 10.74 0.00 46.66 4.94
3297 3961 2.044860 CGAAGCATAGACCGAACGATC 58.955 52.381 0.00 0.00 0.00 3.69
3306 3970 3.999051 CGAACGATCGGCTTCTCC 58.001 61.111 20.98 0.00 45.32 3.71
3307 3971 1.138883 CGAACGATCGGCTTCTCCA 59.861 57.895 20.98 0.00 45.32 3.86
3308 3972 1.140407 CGAACGATCGGCTTCTCCAC 61.140 60.000 20.98 0.00 45.32 4.02
3309 3973 0.173708 GAACGATCGGCTTCTCCACT 59.826 55.000 20.98 0.00 34.01 4.00
3310 3974 0.108615 AACGATCGGCTTCTCCACTG 60.109 55.000 20.98 0.00 34.01 3.66
3311 3975 1.227089 CGATCGGCTTCTCCACTGG 60.227 63.158 7.38 0.00 34.01 4.00
3312 3976 1.667154 CGATCGGCTTCTCCACTGGA 61.667 60.000 7.38 0.00 34.01 3.86
3313 3977 0.537188 GATCGGCTTCTCCACTGGAA 59.463 55.000 0.00 0.00 34.01 3.53
3314 3978 0.984230 ATCGGCTTCTCCACTGGAAA 59.016 50.000 0.00 0.00 34.01 3.13
3315 3979 0.984230 TCGGCTTCTCCACTGGAAAT 59.016 50.000 0.00 0.00 34.01 2.17
3316 3980 1.351017 TCGGCTTCTCCACTGGAAATT 59.649 47.619 0.00 0.00 34.01 1.82
3317 3981 2.569853 TCGGCTTCTCCACTGGAAATTA 59.430 45.455 0.00 0.00 34.01 1.40
3318 3982 3.199946 TCGGCTTCTCCACTGGAAATTAT 59.800 43.478 0.00 0.00 34.01 1.28
3319 3983 3.313526 CGGCTTCTCCACTGGAAATTATG 59.686 47.826 0.00 0.00 34.01 1.90
3320 3984 3.633986 GGCTTCTCCACTGGAAATTATGG 59.366 47.826 0.00 0.00 34.01 2.74
3321 3985 4.273318 GCTTCTCCACTGGAAATTATGGT 58.727 43.478 0.00 0.00 33.67 3.55
3322 3986 4.336713 GCTTCTCCACTGGAAATTATGGTC 59.663 45.833 0.00 0.00 33.67 4.02
3323 3987 5.500234 CTTCTCCACTGGAAATTATGGTCA 58.500 41.667 0.00 0.00 33.67 4.02
3324 3988 5.715439 TCTCCACTGGAAATTATGGTCAT 57.285 39.130 0.00 0.00 33.67 3.06
3325 3989 6.078456 TCTCCACTGGAAATTATGGTCATT 57.922 37.500 0.00 0.00 33.67 2.57
3326 3990 5.887598 TCTCCACTGGAAATTATGGTCATTG 59.112 40.000 0.00 0.00 33.67 2.82
3327 3991 4.402155 TCCACTGGAAATTATGGTCATTGC 59.598 41.667 0.00 0.00 33.67 3.56
3328 3992 4.441913 CCACTGGAAATTATGGTCATTGCC 60.442 45.833 0.00 0.00 30.42 4.52
3329 3993 3.381272 ACTGGAAATTATGGTCATTGCCG 59.619 43.478 0.00 0.00 32.29 5.69
3330 3994 3.360867 TGGAAATTATGGTCATTGCCGT 58.639 40.909 0.00 0.00 32.29 5.68
3331 3995 4.527944 TGGAAATTATGGTCATTGCCGTA 58.472 39.130 0.00 0.00 32.29 4.02
3332 3996 4.950475 TGGAAATTATGGTCATTGCCGTAA 59.050 37.500 11.62 11.62 42.26 3.18
3333 3997 5.067153 TGGAAATTATGGTCATTGCCGTAAG 59.933 40.000 13.53 0.00 41.62 2.34
3334 3998 4.568152 AATTATGGTCATTGCCGTAAGC 57.432 40.909 13.53 0.00 41.62 3.09
3343 4007 4.014065 GCCGTAAGCGAGTCCATC 57.986 61.111 0.00 0.00 41.33 3.51
3344 4008 1.437986 GCCGTAAGCGAGTCCATCT 59.562 57.895 0.00 0.00 41.33 2.90
3345 4009 0.595310 GCCGTAAGCGAGTCCATCTC 60.595 60.000 0.00 0.00 41.33 2.75
3346 4010 0.738975 CCGTAAGCGAGTCCATCTCA 59.261 55.000 0.00 0.00 42.88 3.27
3347 4011 1.134367 CCGTAAGCGAGTCCATCTCAA 59.866 52.381 0.00 0.00 42.88 3.02
3348 4012 2.223829 CCGTAAGCGAGTCCATCTCAAT 60.224 50.000 0.00 0.00 42.88 2.57
3349 4013 2.791560 CGTAAGCGAGTCCATCTCAATG 59.208 50.000 0.00 0.00 42.88 2.82
3350 4014 4.341036 CGTAAGCGAGTCCATCTCAATGG 61.341 52.174 0.00 0.00 46.44 3.16
3413 4077 4.657814 AAAACAGACCCTCCATACATGT 57.342 40.909 2.69 2.69 0.00 3.21
3414 4078 5.772393 AAAACAGACCCTCCATACATGTA 57.228 39.130 8.27 8.27 0.00 2.29
3415 4079 4.755266 AACAGACCCTCCATACATGTAC 57.245 45.455 7.96 0.00 0.00 2.90
3416 4080 3.719871 ACAGACCCTCCATACATGTACA 58.280 45.455 7.96 0.00 0.00 2.90
3417 4081 4.298626 ACAGACCCTCCATACATGTACAT 58.701 43.478 7.96 1.41 0.00 2.29
3418 4082 5.464069 ACAGACCCTCCATACATGTACATA 58.536 41.667 7.96 0.00 0.00 2.29
3419 4083 5.903010 ACAGACCCTCCATACATGTACATAA 59.097 40.000 7.96 0.00 0.00 1.90
3420 4084 6.183360 ACAGACCCTCCATACATGTACATAAC 60.183 42.308 7.96 0.00 0.00 1.89
3421 4085 6.042093 CAGACCCTCCATACATGTACATAACT 59.958 42.308 7.96 0.00 0.00 2.24
3422 4086 6.267928 AGACCCTCCATACATGTACATAACTC 59.732 42.308 7.96 0.00 0.00 3.01
3423 4087 5.307196 ACCCTCCATACATGTACATAACTCC 59.693 44.000 7.96 0.00 0.00 3.85
3424 4088 5.470368 CCTCCATACATGTACATAACTCCG 58.530 45.833 7.96 0.00 0.00 4.63
3425 4089 4.878439 TCCATACATGTACATAACTCCGC 58.122 43.478 7.96 0.00 0.00 5.54
3426 4090 4.587262 TCCATACATGTACATAACTCCGCT 59.413 41.667 7.96 0.00 0.00 5.52
3427 4091 5.069914 TCCATACATGTACATAACTCCGCTT 59.930 40.000 7.96 0.00 0.00 4.68
3428 4092 5.405571 CCATACATGTACATAACTCCGCTTC 59.594 44.000 7.96 0.00 0.00 3.86
3429 4093 3.793559 ACATGTACATAACTCCGCTTCC 58.206 45.455 8.32 0.00 0.00 3.46
3430 4094 2.572191 TGTACATAACTCCGCTTCCG 57.428 50.000 0.00 0.00 0.00 4.30
3454 4405 6.145535 GGTGCATCTCTACAAGAAAACAAAG 58.854 40.000 0.00 0.00 37.61 2.77
3455 4406 6.238759 GGTGCATCTCTACAAGAAAACAAAGT 60.239 38.462 0.00 0.00 37.61 2.66
3458 4409 7.283127 TGCATCTCTACAAGAAAACAAAGTTCT 59.717 33.333 0.00 0.00 37.61 3.01
3465 4416 7.100458 ACAAGAAAACAAAGTTCTACATGCT 57.900 32.000 0.00 0.00 34.19 3.79
3466 4417 6.974622 ACAAGAAAACAAAGTTCTACATGCTG 59.025 34.615 0.00 0.00 34.19 4.41
3509 4460 6.566564 CGACATTGTTATGAAGTATCATGCCC 60.567 42.308 1.69 0.00 45.82 5.36
3510 4461 5.239306 ACATTGTTATGAAGTATCATGCCCG 59.761 40.000 1.69 0.00 45.82 6.13
3514 4465 0.463654 TGAAGTATCATGCCCGCACC 60.464 55.000 0.00 0.00 0.00 5.01
3572 4523 1.916181 AGTTTGACCCATCCCTCGATT 59.084 47.619 0.00 0.00 0.00 3.34
3594 4545 3.188748 GGATTCCATCCTAGGGCCT 57.811 57.895 12.58 12.58 46.19 5.19
3595 4546 2.344093 GGATTCCATCCTAGGGCCTA 57.656 55.000 13.73 13.73 46.19 3.93
3629 4580 1.065928 GGGCACACTAGGACGATCG 59.934 63.158 14.88 14.88 0.00 3.69
3631 4582 1.019673 GGCACACTAGGACGATCGTA 58.980 55.000 22.79 4.68 0.00 3.43
3669 4620 5.500234 TCCCTTTTACCAGATCAACATGAG 58.500 41.667 0.00 0.00 0.00 2.90
3672 4623 5.707298 CCTTTTACCAGATCAACATGAGTGT 59.293 40.000 0.00 0.00 41.28 3.55
3677 4628 5.319453 ACCAGATCAACATGAGTGTTCATT 58.681 37.500 0.00 0.00 45.14 2.57
3679 4630 6.072286 ACCAGATCAACATGAGTGTTCATTTC 60.072 38.462 0.00 0.00 45.14 2.17
3724 4675 8.589629 CAAGTAATTATGCAAAAATCTGACAGC 58.410 33.333 0.00 0.00 0.00 4.40
3726 4677 7.972277 AGTAATTATGCAAAAATCTGACAGCAG 59.028 33.333 0.00 0.00 43.67 4.24
3739 4690 4.889112 AGCAGCATCCATGGGCGG 62.889 66.667 13.02 10.30 34.54 6.13
3751 4702 0.476771 ATGGGCGGGGTAGGTTTATG 59.523 55.000 0.00 0.00 0.00 1.90
3752 4703 1.149854 GGGCGGGGTAGGTTTATGG 59.850 63.158 0.00 0.00 0.00 2.74
3790 4741 1.915141 ACATGCCAACTCCTCCAAAG 58.085 50.000 0.00 0.00 0.00 2.77
3792 4743 0.613012 ATGCCAACTCCTCCAAAGGC 60.613 55.000 0.00 0.00 43.02 4.35
3875 4826 8.359642 CACCATTTTCCATTATTAATCACCGAT 58.640 33.333 0.00 0.00 0.00 4.18
3898 4849 7.415095 CGATTCAATACTTGGCAACTTCCATAA 60.415 37.037 0.00 0.00 35.77 1.90
3917 4868 6.653320 TCCATAATTTGGCCATCGATAAGTAC 59.347 38.462 6.09 0.00 46.01 2.73
3918 4869 6.655003 CCATAATTTGGCCATCGATAAGTACT 59.345 38.462 6.09 0.00 39.09 2.73
3961 4912 5.005682 GCGCAAAAATGGATGTAAATTCTCC 59.994 40.000 0.30 0.00 0.00 3.71
3980 4931 4.101585 TCTCCATACTGGGCATCTACTTTG 59.898 45.833 0.00 0.00 38.32 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.556257 TCTGTTTTGCTACGCTGAACA 58.444 42.857 0.00 0.00 34.76 3.18
28 29 2.922283 ACCCCACTTCTCCAAATCATCT 59.078 45.455 0.00 0.00 0.00 2.90
29 30 3.372440 ACCCCACTTCTCCAAATCATC 57.628 47.619 0.00 0.00 0.00 2.92
31 32 2.307686 GGTACCCCACTTCTCCAAATCA 59.692 50.000 0.00 0.00 0.00 2.57
32 33 3.000684 GGTACCCCACTTCTCCAAATC 57.999 52.381 0.00 0.00 0.00 2.17
117 127 9.881649 ATTCTATATGTAGATTCGTGCATCATT 57.118 29.630 0.00 0.00 36.84 2.57
146 157 9.154847 GCAGAAATAGCCTGAATTTTGTATTTT 57.845 29.630 0.00 0.00 33.65 1.82
147 158 8.313292 TGCAGAAATAGCCTGAATTTTGTATTT 58.687 29.630 0.00 0.00 33.65 1.40
150 161 6.127647 CCTGCAGAAATAGCCTGAATTTTGTA 60.128 38.462 17.39 0.00 33.65 2.41
156 167 3.054139 TGTCCTGCAGAAATAGCCTGAAT 60.054 43.478 17.39 0.00 33.65 2.57
162 173 2.977914 TCTGTGTCCTGCAGAAATAGC 58.022 47.619 17.39 0.64 39.70 2.97
180 206 7.117285 AGCACAAGAAGAAATTTTCCTTTCT 57.883 32.000 5.52 6.66 45.16 2.52
191 217 2.218603 GACGGGAAGCACAAGAAGAAA 58.781 47.619 0.00 0.00 0.00 2.52
200 226 3.959991 GAGGGCTGACGGGAAGCAC 62.960 68.421 8.26 4.71 44.79 4.40
213 239 1.494721 TGTATCCAAGGGAATGAGGGC 59.505 52.381 0.00 0.00 34.34 5.19
214 240 2.780010 AGTGTATCCAAGGGAATGAGGG 59.220 50.000 0.00 0.00 34.34 4.30
215 241 3.200825 ACAGTGTATCCAAGGGAATGAGG 59.799 47.826 0.00 0.00 34.34 3.86
216 242 4.494091 ACAGTGTATCCAAGGGAATGAG 57.506 45.455 0.00 0.00 34.34 2.90
217 243 6.069673 ACAATACAGTGTATCCAAGGGAATGA 60.070 38.462 16.06 0.00 34.34 2.57
218 244 6.122277 ACAATACAGTGTATCCAAGGGAATG 58.878 40.000 16.06 9.67 34.34 2.67
219 245 6.327386 ACAATACAGTGTATCCAAGGGAAT 57.673 37.500 16.06 0.00 34.34 3.01
220 246 5.772393 ACAATACAGTGTATCCAAGGGAA 57.228 39.130 16.06 0.00 34.34 3.97
233 259 5.188434 ACATATCAGCAGCAACAATACAGT 58.812 37.500 0.00 0.00 0.00 3.55
239 265 2.931969 CTCGACATATCAGCAGCAACAA 59.068 45.455 0.00 0.00 0.00 2.83
244 270 1.002359 TCGACTCGACATATCAGCAGC 60.002 52.381 0.00 0.00 0.00 5.25
321 347 1.662629 GAGAGATTGGCATCACACGTG 59.337 52.381 15.48 15.48 0.00 4.49
326 355 3.204526 CAAGAGGAGAGATTGGCATCAC 58.795 50.000 0.00 0.00 0.00 3.06
341 370 0.671781 CTTCACCTGACGCCAAGAGG 60.672 60.000 0.00 0.00 38.23 3.69
350 379 2.421424 GACATTGGCATCTTCACCTGAC 59.579 50.000 0.00 0.00 0.00 3.51
354 383 4.514441 CAGATAGACATTGGCATCTTCACC 59.486 45.833 0.00 0.00 0.00 4.02
355 384 5.121811 ACAGATAGACATTGGCATCTTCAC 58.878 41.667 0.00 0.00 0.00 3.18
377 406 6.252869 CACTCAGCAATTTATTTCATGCAGAC 59.747 38.462 0.00 0.00 41.18 3.51
380 409 6.270156 TCACTCAGCAATTTATTTCATGCA 57.730 33.333 0.00 0.00 41.18 3.96
388 417 7.059156 AGGAAGCTATTCACTCAGCAATTTAT 58.941 34.615 0.00 0.00 40.36 1.40
389 418 6.418101 AGGAAGCTATTCACTCAGCAATTTA 58.582 36.000 0.00 0.00 40.36 1.40
391 420 4.853007 AGGAAGCTATTCACTCAGCAATT 58.147 39.130 0.00 0.00 40.36 2.32
392 421 4.500499 AGGAAGCTATTCACTCAGCAAT 57.500 40.909 0.00 0.00 40.36 3.56
394 423 3.988976 AAGGAAGCTATTCACTCAGCA 57.011 42.857 0.00 0.00 40.36 4.41
398 427 6.874134 TGTTACAGAAAGGAAGCTATTCACTC 59.126 38.462 0.00 0.00 37.15 3.51
399 428 6.769512 TGTTACAGAAAGGAAGCTATTCACT 58.230 36.000 0.00 0.00 37.15 3.41
400 429 6.092807 CCTGTTACAGAAAGGAAGCTATTCAC 59.907 42.308 14.66 0.00 33.47 3.18
407 445 4.009370 ACTCCTGTTACAGAAAGGAAGC 57.991 45.455 14.66 0.00 39.59 3.86
408 446 5.162075 CGTACTCCTGTTACAGAAAGGAAG 58.838 45.833 14.66 6.26 39.59 3.46
430 468 2.486982 TCGGTTCTTCTTCTGGAGTACG 59.513 50.000 0.00 0.00 0.00 3.67
431 469 3.670091 CGTCGGTTCTTCTTCTGGAGTAC 60.670 52.174 0.00 0.00 0.00 2.73
432 470 2.486982 CGTCGGTTCTTCTTCTGGAGTA 59.513 50.000 0.00 0.00 0.00 2.59
433 474 1.269998 CGTCGGTTCTTCTTCTGGAGT 59.730 52.381 0.00 0.00 0.00 3.85
434 475 1.540267 TCGTCGGTTCTTCTTCTGGAG 59.460 52.381 0.00 0.00 0.00 3.86
436 477 1.000607 TGTCGTCGGTTCTTCTTCTGG 60.001 52.381 0.00 0.00 0.00 3.86
446 487 1.888638 CCCCGTTTTGTCGTCGGTT 60.889 57.895 0.00 0.00 42.30 4.44
448 489 2.280321 ACCCCGTTTTGTCGTCGG 60.280 61.111 0.00 0.00 43.30 4.79
449 490 2.651137 CGACCCCGTTTTGTCGTCG 61.651 63.158 4.04 0.00 46.83 5.12
450 491 3.237290 CGACCCCGTTTTGTCGTC 58.763 61.111 4.04 0.00 46.83 4.20
453 494 1.838568 GCTGTCGACCCCGTTTTGTC 61.839 60.000 14.12 0.00 37.05 3.18
456 521 2.663852 CGCTGTCGACCCCGTTTT 60.664 61.111 14.12 0.00 38.10 2.43
464 529 0.443869 AATCAATGCACGCTGTCGAC 59.556 50.000 9.11 9.11 39.41 4.20
488 553 4.373116 CCGGTAGCGGCACTGTGT 62.373 66.667 21.93 0.00 0.00 3.72
496 561 3.401243 GACGTGGTACCGGTAGCGG 62.401 68.421 32.24 30.71 36.42 5.52
504 569 1.019278 TCGAGTACGGACGTGGTACC 61.019 60.000 18.07 4.43 40.84 3.34
555 620 0.109689 CGACCTCCTTGTCAGTCGTC 60.110 60.000 3.39 0.00 45.25 4.20
620 735 3.944055 AGATGGTGATGCGAGGTATAC 57.056 47.619 0.00 0.00 0.00 1.47
691 815 7.730364 AAACGAGTTCATCTGTCTGTTTTAT 57.270 32.000 0.00 0.00 0.00 1.40
696 820 4.747108 CAGAAAACGAGTTCATCTGTCTGT 59.253 41.667 16.81 0.00 34.47 3.41
698 822 3.743396 GCAGAAAACGAGTTCATCTGTCT 59.257 43.478 21.76 5.58 38.06 3.41
706 830 5.073478 CGTTTCATAGCAGAAAACGAGTTC 58.927 41.667 16.40 0.00 39.05 3.01
777 902 3.760035 TTCAGACCTCCGAGCGGC 61.760 66.667 3.59 0.00 34.68 6.53
780 905 2.579738 GGGTTCAGACCTCCGAGC 59.420 66.667 0.00 0.00 45.75 5.03
781 906 2.711922 CCGGGTTCAGACCTCCGAG 61.712 68.421 0.00 0.00 45.75 4.63
782 907 2.678934 CCGGGTTCAGACCTCCGA 60.679 66.667 0.00 0.00 45.75 4.55
783 908 4.452733 GCCGGGTTCAGACCTCCG 62.453 72.222 2.18 0.00 45.75 4.63
784 909 4.452733 CGCCGGGTTCAGACCTCC 62.453 72.222 2.18 0.00 45.75 4.30
785 910 3.692406 ACGCCGGGTTCAGACCTC 61.692 66.667 2.18 0.00 45.75 3.85
786 911 4.003788 CACGCCGGGTTCAGACCT 62.004 66.667 2.18 0.00 45.75 3.85
818 943 1.740380 CGGCCAAATCTCGACTGACAT 60.740 52.381 2.24 0.00 0.00 3.06
848 973 1.227674 GTCTGGGATCGTGGATGGC 60.228 63.158 0.00 0.00 0.00 4.40
852 977 0.613260 CTTTGGTCTGGGATCGTGGA 59.387 55.000 0.00 0.00 0.00 4.02
853 978 0.324943 ACTTTGGTCTGGGATCGTGG 59.675 55.000 0.00 0.00 0.00 4.94
854 979 1.676014 GGACTTTGGTCTGGGATCGTG 60.676 57.143 0.00 0.00 41.82 4.35
855 980 0.613777 GGACTTTGGTCTGGGATCGT 59.386 55.000 0.00 0.00 41.82 3.73
896 1021 3.813443 CTTGATATCTGGGTGGGAACTG 58.187 50.000 3.98 0.00 0.00 3.16
897 1022 2.173569 GCTTGATATCTGGGTGGGAACT 59.826 50.000 3.98 0.00 0.00 3.01
898 1023 2.576615 GCTTGATATCTGGGTGGGAAC 58.423 52.381 3.98 0.00 0.00 3.62
938 1064 0.249073 GTGAGCGAGTGTCAGTGTGT 60.249 55.000 0.00 0.00 0.00 3.72
1407 1559 4.935495 ACCACCAGCCACAGCACG 62.935 66.667 0.00 0.00 43.56 5.34
1500 1652 2.654877 GCCGTGAAGTTCTCCGGA 59.345 61.111 27.74 2.93 39.12 5.14
1699 1851 4.585879 TCCGATGGCTAGCTAAAAGTTTT 58.414 39.130 15.72 6.06 0.00 2.43
1731 1926 2.734175 CGCTGATGAAAAGTGCATGCAT 60.734 45.455 25.64 7.59 0.00 3.96
1747 1942 3.742882 GCTAATAAGATCATGCACGCTGA 59.257 43.478 0.00 0.00 0.00 4.26
1765 1960 0.393267 GTAATGCCGGGTGGTGCTAA 60.393 55.000 2.18 0.00 37.67 3.09
1766 1961 1.222387 GTAATGCCGGGTGGTGCTA 59.778 57.895 2.18 0.00 37.67 3.49
1768 1963 1.528292 TTTGTAATGCCGGGTGGTGC 61.528 55.000 2.18 0.00 37.67 5.01
1769 1964 0.242555 GTTTGTAATGCCGGGTGGTG 59.757 55.000 2.18 0.00 37.67 4.17
1776 1971 4.031652 GCTAAAATGCTGTTTGTAATGCCG 59.968 41.667 0.00 0.00 0.00 5.69
1777 1972 4.928615 TGCTAAAATGCTGTTTGTAATGCC 59.071 37.500 0.00 0.00 0.00 4.40
1778 1973 6.651755 ATGCTAAAATGCTGTTTGTAATGC 57.348 33.333 0.00 0.00 0.00 3.56
1779 1974 8.800972 CACTATGCTAAAATGCTGTTTGTAATG 58.199 33.333 0.00 0.00 0.00 1.90
1780 1975 8.739039 TCACTATGCTAAAATGCTGTTTGTAAT 58.261 29.630 0.00 0.00 0.00 1.89
1781 1976 8.105097 TCACTATGCTAAAATGCTGTTTGTAA 57.895 30.769 0.00 0.00 0.00 2.41
1782 1977 7.390440 ACTCACTATGCTAAAATGCTGTTTGTA 59.610 33.333 0.00 0.00 0.00 2.41
1785 1980 6.824305 ACTCACTATGCTAAAATGCTGTTT 57.176 33.333 0.00 0.00 0.00 2.83
1786 1981 6.824305 AACTCACTATGCTAAAATGCTGTT 57.176 33.333 0.00 0.00 0.00 3.16
1787 1982 6.037610 GCTAACTCACTATGCTAAAATGCTGT 59.962 38.462 0.00 0.00 0.00 4.40
1788 1983 6.037500 TGCTAACTCACTATGCTAAAATGCTG 59.962 38.462 0.00 0.00 0.00 4.41
1789 1984 6.115446 TGCTAACTCACTATGCTAAAATGCT 58.885 36.000 0.00 0.00 0.00 3.79
1828 2023 2.095567 ACGAAGCATGTGCAAGATCAAC 60.096 45.455 7.83 0.00 45.16 3.18
1834 2029 2.224079 ACTACAACGAAGCATGTGCAAG 59.776 45.455 7.83 0.74 45.16 4.01
1835 2030 2.032117 CACTACAACGAAGCATGTGCAA 60.032 45.455 7.83 0.00 45.16 4.08
1837 2032 1.798223 TCACTACAACGAAGCATGTGC 59.202 47.619 0.00 0.00 42.49 4.57
1838 2033 3.059884 ACTCACTACAACGAAGCATGTG 58.940 45.455 0.00 0.00 33.03 3.21
1840 2035 3.059884 ACACTCACTACAACGAAGCATG 58.940 45.455 0.00 0.00 0.00 4.06
1841 2036 3.386768 ACACTCACTACAACGAAGCAT 57.613 42.857 0.00 0.00 0.00 3.79
1842 2037 2.882927 ACACTCACTACAACGAAGCA 57.117 45.000 0.00 0.00 0.00 3.91
1843 2038 3.303132 CCAAACACTCACTACAACGAAGC 60.303 47.826 0.00 0.00 0.00 3.86
1844 2039 3.303132 GCCAAACACTCACTACAACGAAG 60.303 47.826 0.00 0.00 0.00 3.79
1845 2040 2.610374 GCCAAACACTCACTACAACGAA 59.390 45.455 0.00 0.00 0.00 3.85
1847 2042 1.263217 GGCCAAACACTCACTACAACG 59.737 52.381 0.00 0.00 0.00 4.10
1848 2043 1.263217 CGGCCAAACACTCACTACAAC 59.737 52.381 2.24 0.00 0.00 3.32
1869 2108 0.039764 TCCTCAGACTCCACCGACAT 59.960 55.000 0.00 0.00 0.00 3.06
1890 2129 3.378427 GCTTGTCAACCATCCACTAATCC 59.622 47.826 0.00 0.00 0.00 3.01
1898 2146 6.498304 CATATTAACTGCTTGTCAACCATCC 58.502 40.000 0.00 0.00 0.00 3.51
1921 2169 0.813821 CCAGTCTCATCTCTCGTGCA 59.186 55.000 0.00 0.00 0.00 4.57
1926 2192 3.486383 CCTACCTCCAGTCTCATCTCTC 58.514 54.545 0.00 0.00 0.00 3.20
1927 2193 2.424234 GCCTACCTCCAGTCTCATCTCT 60.424 54.545 0.00 0.00 0.00 3.10
1929 2195 1.412361 GGCCTACCTCCAGTCTCATCT 60.412 57.143 0.00 0.00 0.00 2.90
1930 2196 1.044611 GGCCTACCTCCAGTCTCATC 58.955 60.000 0.00 0.00 0.00 2.92
1931 2197 0.339859 TGGCCTACCTCCAGTCTCAT 59.660 55.000 3.32 0.00 36.63 2.90
1942 2208 1.922821 ATGGTCACCATGGCCTACC 59.077 57.895 9.13 16.97 44.07 3.18
1963 2229 1.929169 TCGTACACTACTCATCGGTCG 59.071 52.381 0.00 0.00 0.00 4.79
1968 2234 2.706273 CTGCGTCGTACACTACTCATC 58.294 52.381 0.00 0.00 0.00 2.92
1993 2286 3.675698 GCTATTCCTGGTCGATTCGATTC 59.324 47.826 12.54 8.50 38.42 2.52
1994 2287 3.322254 AGCTATTCCTGGTCGATTCGATT 59.678 43.478 12.54 0.00 38.42 3.34
1995 2288 2.894126 AGCTATTCCTGGTCGATTCGAT 59.106 45.455 12.54 0.00 38.42 3.59
1996 2289 2.307768 AGCTATTCCTGGTCGATTCGA 58.692 47.619 4.29 4.29 0.00 3.71
1997 2290 2.802787 AGCTATTCCTGGTCGATTCG 57.197 50.000 0.00 0.00 0.00 3.34
2025 2322 0.647410 GCTCAATGTGACATCCGTCG 59.353 55.000 0.00 0.00 45.80 5.12
2039 2346 1.347378 TGCATGGACACTAGTGCTCAA 59.653 47.619 22.90 12.92 38.37 3.02
2040 2347 0.975887 TGCATGGACACTAGTGCTCA 59.024 50.000 22.90 19.74 38.37 4.26
2042 2349 1.280133 ACATGCATGGACACTAGTGCT 59.720 47.619 29.41 10.05 38.37 4.40
2043 2350 1.399440 CACATGCATGGACACTAGTGC 59.601 52.381 29.41 14.74 38.05 4.40
2044 2351 1.399440 GCACATGCATGGACACTAGTG 59.601 52.381 29.41 21.44 41.59 2.74
2045 2352 1.742761 GCACATGCATGGACACTAGT 58.257 50.000 29.41 3.93 41.59 2.57
2046 2353 0.654160 CGCACATGCATGGACACTAG 59.346 55.000 29.41 11.42 42.21 2.57
2047 2354 0.744057 CCGCACATGCATGGACACTA 60.744 55.000 29.41 0.00 42.21 2.74
2048 2355 2.042259 CCGCACATGCATGGACACT 61.042 57.895 29.41 6.27 42.21 3.55
2049 2356 2.039974 TCCGCACATGCATGGACAC 61.040 57.895 29.41 14.62 42.21 3.67
2050 2357 2.039974 GTCCGCACATGCATGGACA 61.040 57.895 29.41 6.80 45.15 4.02
2076 2433 2.280052 GGCAGAGCATCGAGAGCC 60.280 66.667 8.82 3.36 42.67 4.70
2078 2435 1.108727 AGGAGGCAGAGCATCGAGAG 61.109 60.000 0.00 0.00 40.46 3.20
2079 2436 1.076412 AGGAGGCAGAGCATCGAGA 60.076 57.895 0.00 0.00 40.46 4.04
2080 2437 1.363443 GAGGAGGCAGAGCATCGAG 59.637 63.158 0.00 0.00 40.46 4.04
2081 2438 2.130426 GGAGGAGGCAGAGCATCGA 61.130 63.158 0.00 0.00 40.46 3.59
2082 2439 2.086251 GAGGAGGAGGCAGAGCATCG 62.086 65.000 0.00 0.00 40.46 3.84
2083 2440 0.760189 AGAGGAGGAGGCAGAGCATC 60.760 60.000 0.00 0.00 38.72 3.91
2084 2441 1.049855 CAGAGGAGGAGGCAGAGCAT 61.050 60.000 0.00 0.00 0.00 3.79
2085 2442 1.685077 CAGAGGAGGAGGCAGAGCA 60.685 63.158 0.00 0.00 0.00 4.26
2086 2443 3.092780 GCAGAGGAGGAGGCAGAGC 62.093 68.421 0.00 0.00 0.00 4.09
2087 2444 0.977108 AAGCAGAGGAGGAGGCAGAG 60.977 60.000 0.00 0.00 0.00 3.35
2088 2445 0.975040 GAAGCAGAGGAGGAGGCAGA 60.975 60.000 0.00 0.00 0.00 4.26
2089 2446 1.263342 TGAAGCAGAGGAGGAGGCAG 61.263 60.000 0.00 0.00 0.00 4.85
2090 2447 1.229304 TGAAGCAGAGGAGGAGGCA 60.229 57.895 0.00 0.00 0.00 4.75
2091 2448 1.521616 CTGAAGCAGAGGAGGAGGC 59.478 63.158 0.00 0.00 32.44 4.70
2092 2449 1.521616 GCTGAAGCAGAGGAGGAGG 59.478 63.158 0.00 0.00 41.59 4.30
2093 2450 1.141449 CGCTGAAGCAGAGGAGGAG 59.859 63.158 2.79 0.00 42.21 3.69
2094 2451 3.011635 GCGCTGAAGCAGAGGAGGA 62.012 63.158 0.00 0.00 42.21 3.71
2540 2941 9.515226 AAATGTGGAAGCTAGTTAATTGAGTAA 57.485 29.630 0.00 0.00 0.00 2.24
2542 2943 8.409358 AAAATGTGGAAGCTAGTTAATTGAGT 57.591 30.769 0.00 0.00 0.00 3.41
2543 2944 9.994432 CTAAAATGTGGAAGCTAGTTAATTGAG 57.006 33.333 0.00 0.00 0.00 3.02
2544 2945 9.515226 ACTAAAATGTGGAAGCTAGTTAATTGA 57.485 29.630 0.00 0.00 0.00 2.57
2546 2947 8.957466 GGACTAAAATGTGGAAGCTAGTTAATT 58.043 33.333 0.00 0.00 0.00 1.40
2547 2948 7.280205 CGGACTAAAATGTGGAAGCTAGTTAAT 59.720 37.037 0.00 0.00 0.00 1.40
2548 2949 6.592607 CGGACTAAAATGTGGAAGCTAGTTAA 59.407 38.462 0.00 0.00 0.00 2.01
2554 2955 2.084546 GCGGACTAAAATGTGGAAGCT 58.915 47.619 0.00 0.00 0.00 3.74
2598 2999 2.127232 GCCGCTTTGACGACAAGC 60.127 61.111 0.00 6.27 37.32 4.01
2696 3097 2.570302 ACGGCCTTAGTTTATGTCCTGT 59.430 45.455 0.00 0.00 0.00 4.00
2815 3216 1.616921 CCAAGACAGGGCCATGGAT 59.383 57.895 23.35 6.57 32.82 3.41
2816 3217 3.089838 CCAAGACAGGGCCATGGA 58.910 61.111 23.35 0.00 32.82 3.41
2817 3218 2.757099 GCCAAGACAGGGCCATGG 60.757 66.667 23.35 7.63 45.87 3.66
2856 3477 3.753272 CACAAACTTCACGGAATCCTGAT 59.247 43.478 0.00 0.00 0.00 2.90
2944 3565 1.978455 GATCCCCACGCCACACCATA 61.978 60.000 0.00 0.00 0.00 2.74
2984 3605 4.022503 AGTCACTCAACCGGTTAGTAACTC 60.023 45.833 21.79 8.29 0.00 3.01
3045 3666 7.419711 TCTCCTATCTGAGACCGTTTAAATT 57.580 36.000 0.00 0.00 36.48 1.82
3047 3668 6.845758 TTCTCCTATCTGAGACCGTTTAAA 57.154 37.500 0.00 0.00 40.98 1.52
3088 3748 4.393062 GTGATGACTGTAATGACTTGGTGG 59.607 45.833 0.00 0.00 0.00 4.61
3089 3749 4.996758 TGTGATGACTGTAATGACTTGGTG 59.003 41.667 0.00 0.00 0.00 4.17
3095 3756 7.261325 AGATAGTGTGTGATGACTGTAATGAC 58.739 38.462 0.00 0.00 0.00 3.06
3110 3771 6.260936 CCACTGAAGTTTTGAAGATAGTGTGT 59.739 38.462 0.00 0.00 34.13 3.72
3112 3773 6.483640 GTCCACTGAAGTTTTGAAGATAGTGT 59.516 38.462 0.00 0.00 34.13 3.55
3131 3792 0.550914 TTGCTTGGTTCAGGTCCACT 59.449 50.000 0.00 0.00 34.45 4.00
3132 3793 1.338020 CTTTGCTTGGTTCAGGTCCAC 59.662 52.381 0.00 0.00 34.45 4.02
3133 3794 1.064017 ACTTTGCTTGGTTCAGGTCCA 60.064 47.619 0.00 0.00 0.00 4.02
3135 3796 2.297701 TGACTTTGCTTGGTTCAGGTC 58.702 47.619 0.00 0.00 0.00 3.85
3136 3797 2.435372 TGACTTTGCTTGGTTCAGGT 57.565 45.000 0.00 0.00 0.00 4.00
3137 3798 3.068590 ACAATGACTTTGCTTGGTTCAGG 59.931 43.478 1.16 0.00 39.03 3.86
3138 3799 4.293415 GACAATGACTTTGCTTGGTTCAG 58.707 43.478 1.16 0.00 39.03 3.02
3139 3800 3.068024 GGACAATGACTTTGCTTGGTTCA 59.932 43.478 1.16 0.00 39.03 3.18
3149 3812 3.057969 TCATCGCAGGACAATGACTTT 57.942 42.857 0.00 0.00 0.00 2.66
3150 3813 2.744202 GTTCATCGCAGGACAATGACTT 59.256 45.455 0.00 0.00 0.00 3.01
3165 3828 5.845391 AGCTAGTTCTGGTAGAGTTCATC 57.155 43.478 0.00 0.00 0.00 2.92
3178 3841 8.398878 ACGCTAGAGATAATTTAGCTAGTTCT 57.601 34.615 0.00 0.00 38.08 3.01
3222 3886 8.688151 GTCTTAGACATACTTCCATTACTCACT 58.312 37.037 7.59 0.00 32.09 3.41
3233 3897 6.716934 TCTCATGGGTCTTAGACATACTTC 57.283 41.667 14.72 0.00 33.68 3.01
3242 3906 7.614974 TGAGATCAGATATCTCATGGGTCTTAG 59.385 40.741 12.49 0.00 46.66 2.18
3260 3924 0.103026 TCGCCGGTGAATGAGATCAG 59.897 55.000 17.09 0.00 0.00 2.90
3262 3926 1.212616 CTTCGCCGGTGAATGAGATC 58.787 55.000 29.50 0.00 0.00 2.75
3275 3939 1.480219 CGTTCGGTCTATGCTTCGCC 61.480 60.000 0.00 0.00 0.00 5.54
3297 3961 1.826385 AATTTCCAGTGGAGAAGCCG 58.174 50.000 12.67 0.00 40.66 5.52
3299 3963 4.273318 ACCATAATTTCCAGTGGAGAAGC 58.727 43.478 12.67 0.00 35.69 3.86
3301 3965 5.512942 TGACCATAATTTCCAGTGGAGAA 57.487 39.130 12.67 10.22 35.69 2.87
3302 3966 5.715439 ATGACCATAATTTCCAGTGGAGA 57.285 39.130 12.67 8.66 35.69 3.71
3303 3967 5.450965 GCAATGACCATAATTTCCAGTGGAG 60.451 44.000 12.67 1.11 35.69 3.86
3304 3968 4.402155 GCAATGACCATAATTTCCAGTGGA 59.598 41.667 8.12 8.12 35.69 4.02
3305 3969 4.441913 GGCAATGACCATAATTTCCAGTGG 60.442 45.833 1.40 1.40 37.74 4.00
3306 3970 4.685924 GGCAATGACCATAATTTCCAGTG 58.314 43.478 0.00 0.00 0.00 3.66
3307 3971 3.381272 CGGCAATGACCATAATTTCCAGT 59.619 43.478 0.00 0.00 0.00 4.00
3308 3972 3.381272 ACGGCAATGACCATAATTTCCAG 59.619 43.478 0.00 0.00 0.00 3.86
3309 3973 3.360867 ACGGCAATGACCATAATTTCCA 58.639 40.909 0.00 0.00 0.00 3.53
3310 3974 5.508200 TTACGGCAATGACCATAATTTCC 57.492 39.130 0.00 0.00 0.00 3.13
3311 3975 4.976116 GCTTACGGCAATGACCATAATTTC 59.024 41.667 0.00 0.00 41.35 2.17
3312 3976 4.497340 CGCTTACGGCAATGACCATAATTT 60.497 41.667 0.00 0.00 41.91 1.82
3313 3977 3.003275 CGCTTACGGCAATGACCATAATT 59.997 43.478 0.00 0.00 41.91 1.40
3314 3978 2.548057 CGCTTACGGCAATGACCATAAT 59.452 45.455 0.00 0.00 41.91 1.28
3315 3979 1.937223 CGCTTACGGCAATGACCATAA 59.063 47.619 0.00 0.00 41.91 1.90
3316 3980 1.137282 TCGCTTACGGCAATGACCATA 59.863 47.619 0.00 0.00 41.91 2.74
3317 3981 0.107897 TCGCTTACGGCAATGACCAT 60.108 50.000 0.00 0.00 41.91 3.55
3318 3982 0.739462 CTCGCTTACGGCAATGACCA 60.739 55.000 0.00 0.00 41.91 4.02
3319 3983 0.739813 ACTCGCTTACGGCAATGACC 60.740 55.000 0.00 0.00 41.91 4.02
3320 3984 0.645868 GACTCGCTTACGGCAATGAC 59.354 55.000 0.00 0.00 41.91 3.06
3321 3985 0.459585 GGACTCGCTTACGGCAATGA 60.460 55.000 0.00 0.00 41.91 2.57
3322 3986 0.739462 TGGACTCGCTTACGGCAATG 60.739 55.000 0.00 0.00 41.91 2.82
3323 3987 0.178068 ATGGACTCGCTTACGGCAAT 59.822 50.000 0.00 0.00 41.91 3.56
3324 3988 0.459585 GATGGACTCGCTTACGGCAA 60.460 55.000 0.00 0.00 41.91 4.52
3325 3989 1.141019 GATGGACTCGCTTACGGCA 59.859 57.895 0.00 0.00 41.91 5.69
3326 3990 0.595310 GAGATGGACTCGCTTACGGC 60.595 60.000 0.00 0.00 40.63 5.68
3327 3991 3.553597 GAGATGGACTCGCTTACGG 57.446 57.895 0.00 0.00 40.63 4.02
3351 4015 2.152830 AGCGTTCCGAGCTACCTATAG 58.847 52.381 0.00 0.00 44.05 1.31
3352 4016 2.267174 AGCGTTCCGAGCTACCTATA 57.733 50.000 0.00 0.00 44.05 1.31
3353 4017 2.267174 TAGCGTTCCGAGCTACCTAT 57.733 50.000 0.00 0.00 44.05 2.57
3354 4018 2.042686 TTAGCGTTCCGAGCTACCTA 57.957 50.000 0.00 0.00 45.64 3.08
3355 4019 1.180029 TTTAGCGTTCCGAGCTACCT 58.820 50.000 0.00 0.00 45.64 3.08
3356 4020 2.220479 ATTTAGCGTTCCGAGCTACC 57.780 50.000 0.00 0.00 45.64 3.18
3357 4021 2.725206 GCTATTTAGCGTTCCGAGCTAC 59.275 50.000 0.00 0.00 45.64 3.58
3358 4022 3.009301 GCTATTTAGCGTTCCGAGCTA 57.991 47.619 0.00 0.00 44.05 3.32
3391 4055 4.998051 ACATGTATGGAGGGTCTGTTTTT 58.002 39.130 0.00 0.00 0.00 1.94
3392 4056 4.657814 ACATGTATGGAGGGTCTGTTTT 57.342 40.909 0.00 0.00 0.00 2.43
3393 4057 4.534500 TGTACATGTATGGAGGGTCTGTTT 59.466 41.667 9.18 0.00 0.00 2.83
3394 4058 4.101114 TGTACATGTATGGAGGGTCTGTT 58.899 43.478 9.18 0.00 0.00 3.16
3395 4059 3.719871 TGTACATGTATGGAGGGTCTGT 58.280 45.455 9.18 0.00 0.00 3.41
3396 4060 4.963318 ATGTACATGTATGGAGGGTCTG 57.037 45.455 7.78 0.00 0.00 3.51
3397 4061 6.143915 AGTTATGTACATGTATGGAGGGTCT 58.856 40.000 18.81 0.00 0.00 3.85
3398 4062 6.420913 AGTTATGTACATGTATGGAGGGTC 57.579 41.667 18.81 0.00 0.00 4.46
3399 4063 5.307196 GGAGTTATGTACATGTATGGAGGGT 59.693 44.000 18.81 0.00 0.00 4.34
3400 4064 5.566826 CGGAGTTATGTACATGTATGGAGGG 60.567 48.000 18.81 0.00 0.00 4.30
3401 4065 5.470368 CGGAGTTATGTACATGTATGGAGG 58.530 45.833 18.81 0.00 0.00 4.30
3402 4066 4.923871 GCGGAGTTATGTACATGTATGGAG 59.076 45.833 18.81 5.74 0.00 3.86
3403 4067 4.587262 AGCGGAGTTATGTACATGTATGGA 59.413 41.667 18.81 0.00 0.00 3.41
3404 4068 4.883083 AGCGGAGTTATGTACATGTATGG 58.117 43.478 18.81 4.70 0.00 2.74
3405 4069 5.405571 GGAAGCGGAGTTATGTACATGTATG 59.594 44.000 18.81 4.70 0.00 2.39
3406 4070 5.539048 GGAAGCGGAGTTATGTACATGTAT 58.461 41.667 18.81 3.49 0.00 2.29
3407 4071 4.498513 CGGAAGCGGAGTTATGTACATGTA 60.499 45.833 18.81 0.08 0.00 2.29
3408 4072 3.737047 CGGAAGCGGAGTTATGTACATGT 60.737 47.826 18.81 2.69 0.00 3.21
3409 4073 2.794910 CGGAAGCGGAGTTATGTACATG 59.205 50.000 18.81 1.40 0.00 3.21
3410 4074 2.223971 CCGGAAGCGGAGTTATGTACAT 60.224 50.000 13.93 13.93 0.00 2.29
3411 4075 1.135527 CCGGAAGCGGAGTTATGTACA 59.864 52.381 0.00 0.00 0.00 2.90
3412 4076 1.135721 ACCGGAAGCGGAGTTATGTAC 59.864 52.381 9.46 0.00 0.00 2.90
3413 4077 1.135527 CACCGGAAGCGGAGTTATGTA 59.864 52.381 9.46 0.00 0.00 2.29
3414 4078 0.108329 CACCGGAAGCGGAGTTATGT 60.108 55.000 9.46 0.00 0.00 2.29
3415 4079 1.429148 GCACCGGAAGCGGAGTTATG 61.429 60.000 9.46 0.00 0.00 1.90
3416 4080 1.153429 GCACCGGAAGCGGAGTTAT 60.153 57.895 9.46 0.00 0.00 1.89
3417 4081 1.895020 ATGCACCGGAAGCGGAGTTA 61.895 55.000 9.46 0.00 33.85 2.24
3418 4082 3.254024 ATGCACCGGAAGCGGAGTT 62.254 57.895 9.46 0.00 33.85 3.01
3419 4083 3.665675 GATGCACCGGAAGCGGAGT 62.666 63.158 9.46 0.00 33.85 3.85
3420 4084 2.892425 GATGCACCGGAAGCGGAG 60.892 66.667 9.46 0.00 33.85 4.63
3421 4085 3.371097 GAGATGCACCGGAAGCGGA 62.371 63.158 9.46 0.00 33.85 5.54
3422 4086 2.016393 TAGAGATGCACCGGAAGCGG 62.016 60.000 9.46 0.00 33.85 5.52
3423 4087 0.872021 GTAGAGATGCACCGGAAGCG 60.872 60.000 9.46 0.00 33.85 4.68
3424 4088 0.175760 TGTAGAGATGCACCGGAAGC 59.824 55.000 9.46 13.14 0.00 3.86
3425 4089 2.166459 TCTTGTAGAGATGCACCGGAAG 59.834 50.000 9.46 0.15 0.00 3.46
3426 4090 2.176045 TCTTGTAGAGATGCACCGGAA 58.824 47.619 9.46 0.00 0.00 4.30
3427 4091 1.847328 TCTTGTAGAGATGCACCGGA 58.153 50.000 9.46 0.00 0.00 5.14
3428 4092 2.672961 TTCTTGTAGAGATGCACCGG 57.327 50.000 0.00 0.00 33.49 5.28
3429 4093 3.745975 TGTTTTCTTGTAGAGATGCACCG 59.254 43.478 0.00 0.00 33.49 4.94
3430 4094 5.689383 TTGTTTTCTTGTAGAGATGCACC 57.311 39.130 0.00 0.00 33.49 5.01
3431 4095 6.729187 ACTTTGTTTTCTTGTAGAGATGCAC 58.271 36.000 0.00 0.00 33.49 4.57
3432 4096 6.942532 ACTTTGTTTTCTTGTAGAGATGCA 57.057 33.333 0.00 0.00 33.49 3.96
3473 4424 8.966069 TTCATAACAATGTCGGAACCATAATA 57.034 30.769 0.00 0.00 0.00 0.98
3480 4431 7.534085 TGATACTTCATAACAATGTCGGAAC 57.466 36.000 0.00 0.00 0.00 3.62
3482 4433 6.202762 GCATGATACTTCATAACAATGTCGGA 59.797 38.462 0.00 0.00 40.70 4.55
3485 4436 6.566564 CGGGCATGATACTTCATAACAATGTC 60.567 42.308 0.00 0.00 40.70 3.06
3490 4441 3.138304 GCGGGCATGATACTTCATAACA 58.862 45.455 0.00 0.00 40.70 2.41
3495 4446 0.463654 GGTGCGGGCATGATACTTCA 60.464 55.000 0.00 0.00 36.00 3.02
3510 4461 2.456119 CGAGTGAAGATGCGGGTGC 61.456 63.158 0.00 0.00 43.20 5.01
3514 4465 5.920840 TCTTATATTTCGAGTGAAGATGCGG 59.079 40.000 0.00 0.00 35.06 5.69
3577 4528 2.026729 GCTTAGGCCCTAGGATGGAATC 60.027 54.545 11.48 0.00 44.55 2.52
3594 4545 0.391130 CCCGCAAGTGCACTAGCTTA 60.391 55.000 22.01 0.00 42.74 3.09
3595 4546 1.672356 CCCGCAAGTGCACTAGCTT 60.672 57.895 22.01 0.19 42.74 3.74
3629 4580 7.787725 AAAAGGGAAAGATGTCATATCGTAC 57.212 36.000 0.00 0.00 0.00 3.67
3631 4582 6.766467 GGTAAAAGGGAAAGATGTCATATCGT 59.234 38.462 0.00 0.00 0.00 3.73
3669 4620 4.095410 TGATTGGCATCGAAATGAACAC 57.905 40.909 0.00 0.00 34.61 3.32
3672 4623 4.015764 TCCTTGATTGGCATCGAAATGAA 58.984 39.130 0.00 0.00 34.61 2.57
3677 4628 4.015764 TGAATTCCTTGATTGGCATCGAA 58.984 39.130 2.27 0.00 31.08 3.71
3679 4630 4.142315 ACTTGAATTCCTTGATTGGCATCG 60.142 41.667 2.27 0.00 31.08 3.84
3726 4677 3.850098 CTACCCCGCCCATGGATGC 62.850 68.421 15.22 8.27 0.00 3.91
3739 4690 6.100134 TGGATTAGTACACCATAAACCTACCC 59.900 42.308 0.00 0.00 0.00 3.69
3742 4693 9.841295 GAAATGGATTAGTACACCATAAACCTA 57.159 33.333 12.00 0.00 42.59 3.08
3751 4702 6.715464 CATGTTCGAAATGGATTAGTACACC 58.285 40.000 0.00 0.00 29.52 4.16
3752 4703 6.192360 GCATGTTCGAAATGGATTAGTACAC 58.808 40.000 16.66 0.00 29.52 2.90
3790 4741 4.182653 ACACTCCATGTTGCTCATAAGCC 61.183 47.826 0.00 0.00 39.76 4.35
3840 4791 2.533916 TGGAAAATGGTGGCTATTGCA 58.466 42.857 0.66 0.00 41.91 4.08
3898 4849 5.290493 TCAGTACTTATCGATGGCCAAAT 57.710 39.130 10.96 6.71 0.00 2.32
3917 4868 6.314018 TGCGCAGTATTTTGTTTAAGATCAG 58.686 36.000 5.66 0.00 0.00 2.90
3918 4869 6.247727 TGCGCAGTATTTTGTTTAAGATCA 57.752 33.333 5.66 0.00 0.00 2.92
3934 4885 3.932545 TTACATCCATTTTTGCGCAGT 57.067 38.095 11.31 4.07 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.