Multiple sequence alignment - TraesCS2A01G082100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G082100 chr2A 100.000 5814 0 0 1 5814 37083649 37089462 0.000000e+00 10737.0
1 TraesCS2A01G082100 chr2A 89.655 58 1 3 3427 3481 37086356 37086411 1.050000e-07 69.4
2 TraesCS2A01G082100 chr2A 89.655 58 1 3 2708 2763 37087075 37087129 1.050000e-07 69.4
3 TraesCS2A01G082100 chr2D 90.812 2253 120 34 914 3127 34227470 34229674 0.000000e+00 2933.0
4 TraesCS2A01G082100 chr2D 92.764 1382 49 14 3789 5138 34230445 34231807 0.000000e+00 1951.0
5 TraesCS2A01G082100 chr2D 94.436 683 19 5 3117 3796 34229755 34230421 0.000000e+00 1033.0
6 TraesCS2A01G082100 chr2D 89.195 435 20 8 5405 5814 34231931 34232363 8.640000e-143 518.0
7 TraesCS2A01G082100 chr2D 86.997 323 26 9 370 688 34227130 34227440 3.330000e-92 350.0
8 TraesCS2A01G082100 chr2D 88.889 261 13 7 1 246 34226842 34227101 2.040000e-79 307.0
9 TraesCS2A01G082100 chr2D 85.903 227 21 9 713 936 566981234 566981016 1.260000e-56 231.0
10 TraesCS2A01G082100 chr2D 80.374 214 22 11 2151 2344 34229388 34229601 1.690000e-30 145.0
11 TraesCS2A01G082100 chr2D 89.655 58 1 3 2708 2763 34230049 34230103 1.050000e-07 69.4
12 TraesCS2A01G082100 chr2B 91.691 1384 68 25 922 2281 56517337 56518697 0.000000e+00 1875.0
13 TraesCS2A01G082100 chr2B 85.971 1333 102 43 3843 5113 56520390 56521699 0.000000e+00 1347.0
14 TraesCS2A01G082100 chr2B 89.130 414 17 5 5404 5814 56521906 56522294 1.880000e-134 490.0
15 TraesCS2A01G082100 chr2B 82.779 511 58 18 3266 3754 56519597 56520099 4.160000e-116 429.0
16 TraesCS2A01G082100 chr2B 86.981 361 32 10 364 717 56516958 56517310 5.460000e-105 392.0
17 TraesCS2A01G082100 chr2B 90.441 272 15 4 1 261 56516689 56516960 1.200000e-91 348.0
18 TraesCS2A01G082100 chr2B 77.579 504 72 31 3290 3758 523779690 523779193 3.450000e-67 267.0
19 TraesCS2A01G082100 chr2B 88.584 219 19 5 2318 2535 56518697 56518910 1.610000e-65 261.0
20 TraesCS2A01G082100 chr2B 90.576 191 10 7 749 936 518595187 518595002 4.500000e-61 246.0
21 TraesCS2A01G082100 chr2B 98.214 112 1 1 259 370 623966723 623966833 1.650000e-45 195.0
22 TraesCS2A01G082100 chr2B 90.840 131 12 0 2861 2991 56518567 56518697 5.990000e-40 176.0
23 TraesCS2A01G082100 chr2B 89.623 106 10 1 3123 3228 56519240 56519344 3.660000e-27 134.0
24 TraesCS2A01G082100 chr2B 87.013 77 8 2 2693 2767 523779568 523779492 1.040000e-12 86.1
25 TraesCS2A01G082100 chr6D 90.120 334 31 2 2014 2347 443864945 443864614 3.220000e-117 433.0
26 TraesCS2A01G082100 chr6D 90.104 192 19 0 2861 3052 443864809 443864618 3.480000e-62 250.0
27 TraesCS2A01G082100 chr6D 88.384 198 15 6 745 940 397169459 397169268 1.260000e-56 231.0
28 TraesCS2A01G082100 chr3D 89.911 337 32 2 2011 2347 124116962 124116628 3.220000e-117 433.0
29 TraesCS2A01G082100 chr3D 89.583 192 20 0 2861 3052 124116823 124116632 1.620000e-60 244.0
30 TraesCS2A01G082100 chr3D 89.286 196 13 6 725 918 329441940 329442129 7.530000e-59 239.0
31 TraesCS2A01G082100 chr3D 92.473 93 7 0 5671 5763 203915811 203915903 3.660000e-27 134.0
32 TraesCS2A01G082100 chr4A 88.131 337 38 2 2011 2347 701629799 701630133 3.260000e-107 399.0
33 TraesCS2A01G082100 chr4A 88.542 192 22 0 2861 3052 701629938 701630129 3.500000e-57 233.0
34 TraesCS2A01G082100 chr4A 77.284 405 71 19 1452 1844 120569780 120570175 9.810000e-53 219.0
35 TraesCS2A01G082100 chr4A 97.222 108 3 0 260 367 467312356 467312249 3.580000e-42 183.0
36 TraesCS2A01G082100 chr4A 83.838 198 24 8 714 908 732302412 732302604 1.290000e-41 182.0
37 TraesCS2A01G082100 chr4A 92.105 114 9 0 2939 3052 672126798 672126911 1.680000e-35 161.0
38 TraesCS2A01G082100 chr1A 78.615 491 55 20 3309 3760 168550504 168550983 4.440000e-71 279.0
39 TraesCS2A01G082100 chr1A 95.679 162 7 0 746 907 511492439 511492600 1.610000e-65 261.0
40 TraesCS2A01G082100 chr1A 91.156 147 10 1 5671 5814 364020297 364020151 4.600000e-46 196.0
41 TraesCS2A01G082100 chr1A 96.491 114 3 1 257 370 485361252 485361364 2.770000e-43 187.0
42 TraesCS2A01G082100 chr1A 92.126 127 10 0 5671 5797 11442090 11441964 4.630000e-41 180.0
43 TraesCS2A01G082100 chr1A 88.073 109 10 1 5709 5814 582061056 582060948 6.120000e-25 126.0
44 TraesCS2A01G082100 chr1A 90.909 66 5 1 2693 2757 168550608 168550673 2.890000e-13 87.9
45 TraesCS2A01G082100 chr6B 97.516 161 4 0 747 907 720611930 720611770 5.740000e-70 276.0
46 TraesCS2A01G082100 chr6B 91.667 192 16 0 2861 3052 75275126 75274935 3.450000e-67 267.0
47 TraesCS2A01G082100 chr6B 94.488 127 4 3 5691 5814 442429658 442429532 5.950000e-45 193.0
48 TraesCS2A01G082100 chr6B 96.296 108 4 0 260 367 646638273 646638166 1.660000e-40 178.0
49 TraesCS2A01G082100 chr3B 96.226 159 6 0 749 907 99735718 99735876 1.610000e-65 261.0
50 TraesCS2A01G082100 chr3B 98.131 107 2 0 260 366 665983717 665983611 2.770000e-43 187.0
51 TraesCS2A01G082100 chr3B 96.396 111 4 0 259 369 693073895 693074005 3.580000e-42 183.0
52 TraesCS2A01G082100 chr3B 84.530 181 23 4 730 907 749162876 749162698 2.150000e-39 174.0
53 TraesCS2A01G082100 chr5A 93.064 173 8 3 749 921 382565020 382564852 3.480000e-62 250.0
54 TraesCS2A01G082100 chr5A 90.217 184 13 4 738 918 241540585 241540404 9.740000e-58 235.0
55 TraesCS2A01G082100 chr5A 87.500 200 16 8 727 924 121416478 121416670 7.580000e-54 222.0
56 TraesCS2A01G082100 chr3A 90.104 192 13 4 734 923 26569645 26569832 1.620000e-60 244.0
57 TraesCS2A01G082100 chr3A 96.396 111 4 0 256 366 661930649 661930759 3.580000e-42 183.0
58 TraesCS2A01G082100 chr5D 88.482 191 22 0 2862 3052 334654550 334654740 1.260000e-56 231.0
59 TraesCS2A01G082100 chr5D 86.772 189 16 8 723 907 32497042 32496859 9.880000e-48 202.0
60 TraesCS2A01G082100 chr5D 95.536 112 4 1 257 367 564839206 564839095 1.660000e-40 178.0
61 TraesCS2A01G082100 chr4D 95.238 147 4 1 5671 5814 148416051 148416197 4.530000e-56 230.0
62 TraesCS2A01G082100 chr4D 92.517 147 5 2 5671 5814 434801288 434801431 7.640000e-49 206.0
63 TraesCS2A01G082100 chr4D 95.283 106 5 0 5671 5776 142309738 142309633 1.000000e-37 169.0
64 TraesCS2A01G082100 chr7D 92.715 151 2 2 5665 5812 450003554 450003410 5.900000e-50 209.0
65 TraesCS2A01G082100 chr7D 91.241 137 11 1 2908 3044 609057335 609057200 9.950000e-43 185.0
66 TraesCS2A01G082100 chr7D 81.726 197 29 6 721 915 541414708 541414517 2.170000e-34 158.0
67 TraesCS2A01G082100 chr1B 89.542 153 6 3 5664 5812 566763880 566763734 9.950000e-43 185.0
68 TraesCS2A01G082100 chr1D 92.063 126 8 1 244 367 464736212 464736337 5.990000e-40 176.0
69 TraesCS2A01G082100 chr6A 82.540 189 30 3 723 909 574522340 574522153 4.660000e-36 163.0
70 TraesCS2A01G082100 chr6A 87.156 109 9 5 5709 5814 15396905 15397011 1.020000e-22 119.0
71 TraesCS2A01G082100 chr7B 92.381 105 8 0 2948 3052 126627352 126627248 3.630000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G082100 chr2A 37083649 37089462 5813 False 3625.266667 10737 93.103333 1 5814 3 chr2A.!!$F1 5813
1 TraesCS2A01G082100 chr2D 34226842 34232363 5521 False 913.300000 2933 89.140250 1 5814 8 chr2D.!!$F1 5813
2 TraesCS2A01G082100 chr2B 56516689 56522294 5605 False 605.777778 1875 88.448889 1 5814 9 chr2B.!!$F2 5813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 301 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.0 13.34 13.34 0.0 4.55 F
2031 2095 0.035056 ATTTCTGCTCTCCCCCAACG 60.035 55.0 0.00 0.00 0.0 4.10 F
2310 2374 1.016627 TATTGCGGCTTCATGAGTGC 58.983 50.0 12.56 12.56 0.0 4.40 F
3095 3221 2.057137 AATGTGTTGGTGTGCTGACT 57.943 45.0 0.00 0.00 0.0 3.41 F
3244 3461 0.110486 GTCCTCAAACTTGCCTCCCA 59.890 55.0 0.00 0.00 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2175 1.140852 CCATCCCGCACAAGGATAAGA 59.859 52.381 0.00 0.0 42.41 2.10 R
3224 3441 0.110486 GGGAGGCAAGTTTGAGGACA 59.890 55.000 0.00 0.0 0.00 4.02 R
3225 3442 0.110486 TGGGAGGCAAGTTTGAGGAC 59.890 55.000 0.00 0.0 0.00 3.85 R
4010 4674 0.177604 GAGGTGGTCAGAGCCTGATG 59.822 60.000 7.95 0.0 42.73 3.07 R
5126 5839 0.320771 AGGCCAACACAGAACTAGCG 60.321 55.000 5.01 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.298014 GGACTTCCTGGAGTGGCTG 59.702 63.158 0.00 0.00 0.00 4.85
65 66 3.256879 TCAGCGTGGAGATCTTGATATCC 59.743 47.826 15.20 15.20 32.75 2.59
71 72 5.462405 GTGGAGATCTTGATATCCGTGTAC 58.538 45.833 16.47 7.83 34.78 2.90
101 102 1.612950 CAGGAGCAGATGTAGAGCGAT 59.387 52.381 0.00 0.00 0.00 4.58
102 103 2.816672 CAGGAGCAGATGTAGAGCGATA 59.183 50.000 0.00 0.00 0.00 2.92
120 122 2.838386 TAGCGTGAGACCAATACGTC 57.162 50.000 0.00 0.00 39.79 4.34
125 127 2.669364 GTGAGACCAATACGTCGTTGT 58.331 47.619 1.78 0.00 37.85 3.32
234 251 3.610911 AGAAGCCCCTGTAAAGAATTCG 58.389 45.455 0.00 0.00 0.00 3.34
257 283 5.409520 CGTAATTCGGACCATGAATGATCAT 59.590 40.000 1.18 1.18 40.28 2.45
268 294 4.963318 TGAATGATCATGTACTCCCTCC 57.037 45.455 9.46 0.00 0.00 4.30
269 295 3.321968 TGAATGATCATGTACTCCCTCCG 59.678 47.826 9.46 0.00 0.00 4.63
270 296 2.454336 TGATCATGTACTCCCTCCGT 57.546 50.000 0.00 0.00 0.00 4.69
271 297 2.747177 TGATCATGTACTCCCTCCGTT 58.253 47.619 0.00 0.00 0.00 4.44
272 298 2.693591 TGATCATGTACTCCCTCCGTTC 59.306 50.000 0.00 0.00 0.00 3.95
273 299 1.100510 TCATGTACTCCCTCCGTTCG 58.899 55.000 0.00 0.00 0.00 3.95
274 300 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
275 301 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
276 302 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
277 303 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
278 304 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
279 305 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
280 306 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
281 307 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
282 308 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
283 309 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
284 310 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
285 311 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
286 312 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
287 313 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
288 314 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
289 315 3.124636 CCGTTCGGAATTACTTGTCTTGG 59.875 47.826 5.19 0.00 0.00 3.61
290 316 3.991773 CGTTCGGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
291 317 4.630069 CGTTCGGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
292 318 5.808540 CGTTCGGAATTACTTGTCTTGGATA 59.191 40.000 0.00 0.00 0.00 2.59
293 319 6.479001 CGTTCGGAATTACTTGTCTTGGATAT 59.521 38.462 0.00 0.00 0.00 1.63
294 320 7.516785 CGTTCGGAATTACTTGTCTTGGATATG 60.517 40.741 0.00 0.00 0.00 1.78
295 321 6.288294 TCGGAATTACTTGTCTTGGATATGG 58.712 40.000 0.00 0.00 0.00 2.74
296 322 6.099125 TCGGAATTACTTGTCTTGGATATGGA 59.901 38.462 0.00 0.00 0.00 3.41
297 323 6.936900 CGGAATTACTTGTCTTGGATATGGAT 59.063 38.462 0.00 0.00 0.00 3.41
298 324 7.095060 CGGAATTACTTGTCTTGGATATGGATG 60.095 40.741 0.00 0.00 0.00 3.51
299 325 7.721399 GGAATTACTTGTCTTGGATATGGATGT 59.279 37.037 0.00 0.00 0.00 3.06
300 326 9.778741 GAATTACTTGTCTTGGATATGGATGTA 57.221 33.333 0.00 0.00 0.00 2.29
302 328 9.950496 ATTACTTGTCTTGGATATGGATGTATC 57.050 33.333 0.00 0.00 0.00 2.24
303 329 7.623999 ACTTGTCTTGGATATGGATGTATCT 57.376 36.000 0.00 0.00 32.78 1.98
304 330 8.727100 ACTTGTCTTGGATATGGATGTATCTA 57.273 34.615 0.00 0.00 32.78 1.98
305 331 9.159254 ACTTGTCTTGGATATGGATGTATCTAA 57.841 33.333 0.00 0.00 32.72 2.10
308 334 9.778741 TGTCTTGGATATGGATGTATCTAAAAC 57.221 33.333 0.00 0.00 33.13 2.43
340 366 8.255111 ACATCTAGATACATCCATTTCTGTGA 57.745 34.615 4.54 0.00 0.00 3.58
341 367 8.147058 ACATCTAGATACATCCATTTCTGTGAC 58.853 37.037 4.54 0.00 0.00 3.67
342 368 7.660030 TCTAGATACATCCATTTCTGTGACA 57.340 36.000 0.00 0.00 0.00 3.58
343 369 8.078060 TCTAGATACATCCATTTCTGTGACAA 57.922 34.615 0.00 0.00 0.00 3.18
344 370 8.200120 TCTAGATACATCCATTTCTGTGACAAG 58.800 37.037 0.00 0.00 0.00 3.16
345 371 6.715280 AGATACATCCATTTCTGTGACAAGT 58.285 36.000 0.00 0.00 0.00 3.16
346 372 7.851228 AGATACATCCATTTCTGTGACAAGTA 58.149 34.615 0.00 0.00 0.00 2.24
347 373 8.321353 AGATACATCCATTTCTGTGACAAGTAA 58.679 33.333 0.00 0.00 0.00 2.24
348 374 9.113838 GATACATCCATTTCTGTGACAAGTAAT 57.886 33.333 0.00 0.00 0.00 1.89
349 375 7.765695 ACATCCATTTCTGTGACAAGTAATT 57.234 32.000 0.00 0.00 0.00 1.40
350 376 7.820648 ACATCCATTTCTGTGACAAGTAATTC 58.179 34.615 0.00 0.00 0.00 2.17
351 377 7.667219 ACATCCATTTCTGTGACAAGTAATTCT 59.333 33.333 0.00 0.00 0.00 2.40
352 378 7.439157 TCCATTTCTGTGACAAGTAATTCTG 57.561 36.000 0.00 0.00 0.00 3.02
353 379 7.223584 TCCATTTCTGTGACAAGTAATTCTGA 58.776 34.615 0.00 0.00 0.00 3.27
354 380 7.719193 TCCATTTCTGTGACAAGTAATTCTGAA 59.281 33.333 0.00 0.00 0.00 3.02
355 381 7.805071 CCATTTCTGTGACAAGTAATTCTGAAC 59.195 37.037 0.00 0.00 0.00 3.18
356 382 6.525121 TTCTGTGACAAGTAATTCTGAACG 57.475 37.500 0.00 0.00 0.00 3.95
357 383 4.988540 TCTGTGACAAGTAATTCTGAACGG 59.011 41.667 0.00 0.00 0.00 4.44
358 384 4.951254 TGTGACAAGTAATTCTGAACGGA 58.049 39.130 0.00 0.00 0.00 4.69
359 385 4.988540 TGTGACAAGTAATTCTGAACGGAG 59.011 41.667 0.00 0.00 0.00 4.63
360 386 4.389077 GTGACAAGTAATTCTGAACGGAGG 59.611 45.833 0.00 0.00 0.00 4.30
361 387 4.282449 TGACAAGTAATTCTGAACGGAGGA 59.718 41.667 0.00 0.00 0.00 3.71
362 388 5.221561 TGACAAGTAATTCTGAACGGAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
392 418 1.282875 GCACTTGCTTTGTCCGGAC 59.717 57.895 28.17 28.17 38.21 4.79
393 419 1.569493 CACTTGCTTTGTCCGGACG 59.431 57.895 28.70 16.22 0.00 4.79
394 420 1.597027 ACTTGCTTTGTCCGGACGG 60.597 57.895 28.70 21.03 0.00 4.79
395 421 1.597027 CTTGCTTTGTCCGGACGGT 60.597 57.895 28.70 0.00 36.47 4.83
418 444 2.974148 TGCTGCCGCTGTTGTCTG 60.974 61.111 0.70 0.00 36.97 3.51
432 458 1.279840 GTCTGGCGCAAGTGTGAAC 59.720 57.895 12.53 0.00 41.68 3.18
443 469 0.681733 AGTGTGAACTGCGGATGAGT 59.318 50.000 0.00 0.00 0.00 3.41
444 470 1.071605 GTGTGAACTGCGGATGAGTC 58.928 55.000 0.00 0.00 0.00 3.36
511 538 3.958147 ATGGCGACGGCTCCTGTTG 62.958 63.158 22.70 0.00 39.81 3.33
525 552 4.025401 GTTGGCGTTCGTGGCTGG 62.025 66.667 0.00 0.00 35.06 4.85
555 582 2.236146 AGGTAGGCGTGTGATTGATTGA 59.764 45.455 0.00 0.00 0.00 2.57
556 583 3.118261 AGGTAGGCGTGTGATTGATTGAT 60.118 43.478 0.00 0.00 0.00 2.57
557 584 3.248602 GGTAGGCGTGTGATTGATTGATC 59.751 47.826 0.00 0.00 0.00 2.92
619 646 1.864711 ACGTTCACATTCTGACAACCG 59.135 47.619 0.00 0.00 0.00 4.44
627 654 2.999739 TTCTGACAACCGCCGGAACC 63.000 60.000 11.71 0.00 0.00 3.62
628 655 3.530910 CTGACAACCGCCGGAACCT 62.531 63.158 11.71 0.00 0.00 3.50
668 698 4.706962 GGCTTGGAATTATACCATGGATCC 59.293 45.833 21.47 15.06 37.26 3.36
690 720 2.360600 TGCCGGGGAATCGTTTGG 60.361 61.111 2.18 0.00 0.00 3.28
720 750 9.635404 TTTTTCGGGGATTGTTGATTATATACT 57.365 29.630 0.00 0.00 0.00 2.12
755 785 8.469309 TGTACACTAACATTATACTACTCCCC 57.531 38.462 0.00 0.00 0.00 4.81
756 786 6.990908 ACACTAACATTATACTACTCCCCC 57.009 41.667 0.00 0.00 0.00 5.40
775 805 4.788679 CCCCCGTTCCTAAATATTTGTCT 58.211 43.478 11.05 0.00 0.00 3.41
776 806 5.198207 CCCCCGTTCCTAAATATTTGTCTT 58.802 41.667 11.05 0.00 0.00 3.01
777 807 5.655090 CCCCCGTTCCTAAATATTTGTCTTT 59.345 40.000 11.05 0.00 0.00 2.52
778 808 6.153851 CCCCCGTTCCTAAATATTTGTCTTTT 59.846 38.462 11.05 0.00 0.00 2.27
779 809 7.310175 CCCCCGTTCCTAAATATTTGTCTTTTT 60.310 37.037 11.05 0.00 0.00 1.94
780 810 8.741841 CCCCGTTCCTAAATATTTGTCTTTTTA 58.258 33.333 11.05 0.00 0.00 1.52
781 811 9.783256 CCCGTTCCTAAATATTTGTCTTTTTAG 57.217 33.333 11.05 0.00 33.47 1.85
806 836 9.773328 AGACATTTCAAATGATTAACACATACG 57.227 29.630 17.30 0.00 0.00 3.06
807 837 8.909708 ACATTTCAAATGATTAACACATACGG 57.090 30.769 17.30 0.00 0.00 4.02
808 838 8.735315 ACATTTCAAATGATTAACACATACGGA 58.265 29.630 17.30 0.00 0.00 4.69
809 839 9.734620 CATTTCAAATGATTAACACATACGGAT 57.265 29.630 3.82 0.00 0.00 4.18
810 840 9.734620 ATTTCAAATGATTAACACATACGGATG 57.265 29.630 5.94 5.94 39.16 3.51
812 842 8.950208 TCAAATGATTAACACATACGGATGTA 57.050 30.769 14.23 0.00 44.82 2.29
813 843 9.554395 TCAAATGATTAACACATACGGATGTAT 57.446 29.630 14.23 8.21 44.82 2.29
855 885 9.436957 AGTGTAGATTCATTCATTTTACTTCGT 57.563 29.630 0.00 0.00 0.00 3.85
860 890 8.892723 AGATTCATTCATTTTACTTCGTATGCA 58.107 29.630 0.00 0.00 0.00 3.96
861 891 9.162793 GATTCATTCATTTTACTTCGTATGCAG 57.837 33.333 0.00 0.00 0.00 4.41
862 892 7.609760 TCATTCATTTTACTTCGTATGCAGT 57.390 32.000 0.00 0.00 0.00 4.40
863 893 7.684670 TCATTCATTTTACTTCGTATGCAGTC 58.315 34.615 0.00 0.00 0.00 3.51
864 894 7.333174 TCATTCATTTTACTTCGTATGCAGTCA 59.667 33.333 0.00 0.00 0.00 3.41
865 895 6.403333 TCATTTTACTTCGTATGCAGTCAC 57.597 37.500 0.00 0.00 0.00 3.67
866 896 6.163476 TCATTTTACTTCGTATGCAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
867 897 6.649141 TCATTTTACTTCGTATGCAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
868 898 5.839262 TTTACTTCGTATGCAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
869 899 3.386768 ACTTCGTATGCAGTCACTTGT 57.613 42.857 0.00 0.00 0.00 3.16
870 900 3.728845 ACTTCGTATGCAGTCACTTGTT 58.271 40.909 0.00 0.00 0.00 2.83
871 901 4.878439 ACTTCGTATGCAGTCACTTGTTA 58.122 39.130 0.00 0.00 0.00 2.41
872 902 5.294356 ACTTCGTATGCAGTCACTTGTTAA 58.706 37.500 0.00 0.00 0.00 2.01
873 903 5.756347 ACTTCGTATGCAGTCACTTGTTAAA 59.244 36.000 0.00 0.00 0.00 1.52
874 904 6.259167 ACTTCGTATGCAGTCACTTGTTAAAA 59.741 34.615 0.00 0.00 0.00 1.52
875 905 6.795098 TCGTATGCAGTCACTTGTTAAAAT 57.205 33.333 0.00 0.00 0.00 1.82
876 906 6.598525 TCGTATGCAGTCACTTGTTAAAATG 58.401 36.000 0.00 0.00 0.00 2.32
877 907 5.283717 CGTATGCAGTCACTTGTTAAAATGC 59.716 40.000 0.00 0.00 0.00 3.56
878 908 3.976169 TGCAGTCACTTGTTAAAATGCC 58.024 40.909 0.00 0.00 0.00 4.40
879 909 3.636300 TGCAGTCACTTGTTAAAATGCCT 59.364 39.130 0.00 0.00 0.00 4.75
880 910 4.824537 TGCAGTCACTTGTTAAAATGCCTA 59.175 37.500 0.00 0.00 0.00 3.93
881 911 5.048782 TGCAGTCACTTGTTAAAATGCCTAG 60.049 40.000 0.00 0.00 0.00 3.02
882 912 5.181245 GCAGTCACTTGTTAAAATGCCTAGA 59.819 40.000 0.00 0.00 0.00 2.43
883 913 6.293955 GCAGTCACTTGTTAAAATGCCTAGAA 60.294 38.462 0.00 0.00 0.00 2.10
884 914 7.648142 CAGTCACTTGTTAAAATGCCTAGAAA 58.352 34.615 0.00 0.00 0.00 2.52
885 915 7.805071 CAGTCACTTGTTAAAATGCCTAGAAAG 59.195 37.037 0.00 0.00 0.00 2.62
886 916 7.719633 AGTCACTTGTTAAAATGCCTAGAAAGA 59.280 33.333 0.00 0.00 0.00 2.52
887 917 7.803659 GTCACTTGTTAAAATGCCTAGAAAGAC 59.196 37.037 0.00 0.00 0.00 3.01
888 918 7.500892 TCACTTGTTAAAATGCCTAGAAAGACA 59.499 33.333 0.00 0.00 0.00 3.41
889 919 8.134895 CACTTGTTAAAATGCCTAGAAAGACAA 58.865 33.333 0.00 0.00 0.00 3.18
890 920 8.352942 ACTTGTTAAAATGCCTAGAAAGACAAG 58.647 33.333 0.00 0.00 43.36 3.16
891 921 7.817418 TGTTAAAATGCCTAGAAAGACAAGT 57.183 32.000 0.00 0.00 0.00 3.16
892 922 8.911918 TGTTAAAATGCCTAGAAAGACAAGTA 57.088 30.769 0.00 0.00 0.00 2.24
893 923 9.515226 TGTTAAAATGCCTAGAAAGACAAGTAT 57.485 29.630 0.00 0.00 0.00 2.12
898 928 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
899 929 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
900 930 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
901 931 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
902 932 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
903 933 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
904 934 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
905 935 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
906 936 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
907 937 5.021458 AGACAAGTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
908 938 5.127356 AGACAAGTATTTAGGAACGGAGGAG 59.873 44.000 0.00 0.00 0.00 3.69
909 939 4.161754 ACAAGTATTTAGGAACGGAGGAGG 59.838 45.833 0.00 0.00 0.00 4.30
910 940 3.306613 AGTATTTAGGAACGGAGGAGGG 58.693 50.000 0.00 0.00 0.00 4.30
911 941 2.563039 ATTTAGGAACGGAGGAGGGA 57.437 50.000 0.00 0.00 0.00 4.20
912 942 1.861982 TTTAGGAACGGAGGAGGGAG 58.138 55.000 0.00 0.00 0.00 4.30
913 943 0.708802 TTAGGAACGGAGGAGGGAGT 59.291 55.000 0.00 0.00 0.00 3.85
914 944 1.600058 TAGGAACGGAGGAGGGAGTA 58.400 55.000 0.00 0.00 0.00 2.59
915 945 0.935194 AGGAACGGAGGAGGGAGTAT 59.065 55.000 0.00 0.00 0.00 2.12
916 946 1.291335 AGGAACGGAGGAGGGAGTATT 59.709 52.381 0.00 0.00 0.00 1.89
917 947 2.517127 AGGAACGGAGGAGGGAGTATTA 59.483 50.000 0.00 0.00 0.00 0.98
918 948 3.142407 AGGAACGGAGGAGGGAGTATTAT 59.858 47.826 0.00 0.00 0.00 1.28
919 949 3.902467 GGAACGGAGGAGGGAGTATTATT 59.098 47.826 0.00 0.00 0.00 1.40
1051 1097 3.992641 TCGCCCACTCCCTCCTCA 61.993 66.667 0.00 0.00 0.00 3.86
1054 1100 2.452114 CCCACTCCCTCCTCACCT 59.548 66.667 0.00 0.00 0.00 4.00
1056 1102 1.079256 CCACTCCCTCCTCACCTCA 59.921 63.158 0.00 0.00 0.00 3.86
1057 1103 0.975040 CCACTCCCTCCTCACCTCAG 60.975 65.000 0.00 0.00 0.00 3.35
1098 1146 2.575993 CTCTGGCTGACTGACCGG 59.424 66.667 0.00 0.00 0.00 5.28
1131 1179 2.362889 CAATCCTGGCCCACCACC 60.363 66.667 0.00 0.00 42.67 4.61
1173 1221 2.357034 CCCGTGTTCACACTCCCG 60.357 66.667 8.41 0.00 44.34 5.14
1186 1234 2.106857 ACACTCCCGAATTACCCAAACA 59.893 45.455 0.00 0.00 0.00 2.83
1196 1244 0.104356 TACCCAAACACCCTCCTCCA 60.104 55.000 0.00 0.00 0.00 3.86
1229 1277 4.452733 GGGCAGAACCGTCCCTCG 62.453 72.222 0.00 0.00 40.62 4.63
1232 1280 2.342279 CAGAACCGTCCCTCGCAA 59.658 61.111 0.00 0.00 38.35 4.85
1233 1281 2.027625 CAGAACCGTCCCTCGCAAC 61.028 63.158 0.00 0.00 38.35 4.17
1234 1282 2.207924 AGAACCGTCCCTCGCAACT 61.208 57.895 0.00 0.00 38.35 3.16
1433 1487 1.905843 CATTTTCCGCCCACCACCA 60.906 57.895 0.00 0.00 0.00 4.17
1503 1557 4.849329 GACGAGTACCTGGCGGCG 62.849 72.222 0.51 0.51 0.00 6.46
1612 1671 2.664835 ATCCGCTCGATCCCCTTCCT 62.665 60.000 0.00 0.00 0.00 3.36
1646 1705 1.006805 CCGATCTGATCTGACGGGC 60.007 63.158 23.37 8.60 39.92 6.13
1647 1706 1.371022 CGATCTGATCTGACGGGCG 60.371 63.158 15.16 3.53 0.00 6.13
1648 1707 1.663074 GATCTGATCTGACGGGCGC 60.663 63.158 10.37 0.00 0.00 6.53
1649 1708 3.490793 ATCTGATCTGACGGGCGCG 62.491 63.158 22.69 22.69 0.00 6.86
1849 1908 0.456312 GACTTCTACCAGGTGACGCG 60.456 60.000 3.53 3.53 0.00 6.01
2031 2095 0.035056 ATTTCTGCTCTCCCCCAACG 60.035 55.000 0.00 0.00 0.00 4.10
2048 2112 4.398319 CCAACGGGCCATAAGATTTATCT 58.602 43.478 4.39 0.00 39.22 1.98
2053 2117 4.384208 CGGGCCATAAGATTTATCTAGGGG 60.384 50.000 4.39 0.00 35.76 4.79
2077 2141 8.145767 GGGTTAAGCCTGTTTTGTTTAGTTTAT 58.854 33.333 16.59 0.00 37.43 1.40
2085 2149 5.912396 TGTTTTGTTTAGTTTATCTGCGCTG 59.088 36.000 9.73 8.88 0.00 5.18
2086 2150 3.740044 TGTTTAGTTTATCTGCGCTGC 57.260 42.857 9.73 0.00 0.00 5.25
2092 2156 1.063174 GTTTATCTGCGCTGCCTGAAG 59.937 52.381 9.73 0.00 0.00 3.02
2099 2163 2.036571 CGCTGCCTGAAGTGATGCA 61.037 57.895 0.00 0.00 0.00 3.96
2111 2175 5.255687 TGAAGTGATGCACCATTTCTGTAT 58.744 37.500 16.47 0.00 34.92 2.29
2176 2240 1.341209 ACTTGAGTGACGACAGATGCA 59.659 47.619 0.00 0.00 0.00 3.96
2189 2253 5.577164 ACGACAGATGCAGTATTGTTTAGTC 59.423 40.000 0.00 0.00 0.00 2.59
2203 2267 2.483014 TTAGTCGGGTGGTTGGAATG 57.517 50.000 0.00 0.00 0.00 2.67
2231 2295 9.753674 TTGGTCCAGAGAAAATTGTTTATAGAT 57.246 29.630 0.00 0.00 0.00 1.98
2253 2317 7.177878 AGATTAGTGATTTGGTGAAATCTGGT 58.822 34.615 8.55 0.00 45.41 4.00
2259 2323 2.655090 TGGTGAAATCTGGTGCTTGA 57.345 45.000 0.00 0.00 0.00 3.02
2275 2339 3.382227 TGCTTGATTATTGCTGTGATGGG 59.618 43.478 0.00 0.00 0.00 4.00
2290 2354 3.914426 GATGGGTACATCCAAGACAGT 57.086 47.619 0.00 0.00 46.23 3.55
2310 2374 1.016627 TATTGCGGCTTCATGAGTGC 58.983 50.000 12.56 12.56 0.00 4.40
2312 2376 3.121030 GCGGCTTCATGAGTGCGT 61.121 61.111 13.97 0.00 0.00 5.24
2341 2405 5.902613 TTTGTTCCATCCAATGTCTGATC 57.097 39.130 0.00 0.00 0.00 2.92
2352 2416 5.011840 TCCAATGTCTGATCCTGATCTGATC 59.988 44.000 16.52 10.72 44.05 2.92
2367 2433 8.872134 CCTGATCTGATCTGATATAGCCATAAT 58.128 37.037 21.69 0.00 0.00 1.28
2430 2496 3.253188 ACATGTGTTGGTGTGCTAATGAC 59.747 43.478 0.00 0.00 0.00 3.06
2444 2510 4.263905 TGCTAATGACAGTTCAGGGGAAAT 60.264 41.667 0.00 0.00 34.35 2.17
2450 2516 2.597455 CAGTTCAGGGGAAATGGTGTT 58.403 47.619 0.00 0.00 43.45 3.32
2451 2517 2.558359 CAGTTCAGGGGAAATGGTGTTC 59.442 50.000 0.00 0.00 43.45 3.18
2462 2528 5.710099 GGGAAATGGTGTTCTGATCAAGTAA 59.290 40.000 0.00 0.00 0.00 2.24
2522 2589 5.128827 GTGTGACCATGGTAGATTAAGAGGA 59.871 44.000 19.80 0.00 0.00 3.71
2541 2608 8.443953 AAGAGGATTATGAAGCTAACAATCAC 57.556 34.615 10.57 5.98 0.00 3.06
2542 2609 7.568349 AGAGGATTATGAAGCTAACAATCACA 58.432 34.615 10.57 0.00 0.00 3.58
2543 2610 8.049117 AGAGGATTATGAAGCTAACAATCACAA 58.951 33.333 10.57 0.00 0.00 3.33
2550 2617 7.985634 TGAAGCTAACAATCACAAAAACTTC 57.014 32.000 0.00 0.00 0.00 3.01
2614 2681 9.267096 GTCATTTCTCTTTGTTCTATTTTAGCG 57.733 33.333 0.00 0.00 0.00 4.26
2686 2792 6.867816 ACAACTGTTGTTATGCAATGTTATGG 59.132 34.615 19.85 0.00 42.22 2.74
2705 2811 4.002906 TGGAAAGTATGTGTGTCCTCAC 57.997 45.455 0.00 0.00 44.08 3.51
2733 2839 7.624549 TCTCATAGGCTGTCTAAAATCTGTTT 58.375 34.615 0.00 0.00 0.00 2.83
2889 2995 2.214387 TAGCGATGACAGATGCAGTG 57.786 50.000 0.00 0.00 0.00 3.66
2905 3011 3.880490 TGCAGTGTTGTTTAGTTGGGTAG 59.120 43.478 0.00 0.00 0.00 3.18
2918 3024 4.918588 AGTTGGGTAGTTGGAATAGTTGG 58.081 43.478 0.00 0.00 0.00 3.77
2920 3026 4.563140 TGGGTAGTTGGAATAGTTGGTC 57.437 45.455 0.00 0.00 0.00 4.02
2928 3034 4.610605 TGGAATAGTTGGTCGAGACAAA 57.389 40.909 5.55 0.00 0.00 2.83
2944 3070 9.490663 GTCGAGACAAAATTGTTTATAGAATGG 57.509 33.333 0.00 0.00 42.43 3.16
2946 3072 9.277565 CGAGACAAAATTGTTTATAGAATGGTG 57.722 33.333 0.00 0.00 42.43 4.17
2984 3110 3.514645 GGCTTGTTTATTGCTGTGATGG 58.485 45.455 0.00 0.00 0.00 3.51
3092 3218 3.441496 AAGAAATGTGTTGGTGTGCTG 57.559 42.857 0.00 0.00 0.00 4.41
3095 3221 2.057137 AATGTGTTGGTGTGCTGACT 57.943 45.000 0.00 0.00 0.00 3.41
3097 3223 2.238942 TGTGTTGGTGTGCTGACTAG 57.761 50.000 0.00 0.00 0.00 2.57
3115 3241 2.887151 AGAGTTCAGGGGAAATGGTG 57.113 50.000 0.00 0.00 34.13 4.17
3166 3383 6.944290 AGGCAACATTGTATGCATATGTCTAT 59.056 34.615 10.16 0.00 44.32 1.98
3244 3461 0.110486 GTCCTCAAACTTGCCTCCCA 59.890 55.000 0.00 0.00 0.00 4.37
3248 3465 3.019564 CCTCAAACTTGCCTCCCAATAG 58.980 50.000 0.00 0.00 31.91 1.73
3274 3705 8.833231 ATATTAGGTCACCGTTTATCTTCATG 57.167 34.615 0.00 0.00 0.00 3.07
3306 3737 4.263462 TGAACTATGTGATCCTGGTTTGCT 60.263 41.667 0.00 0.00 0.00 3.91
3384 3815 5.587388 ACATGAATGTTTATGCTTCCTGG 57.413 39.130 0.00 0.00 37.90 4.45
3415 3847 3.741344 GTGTGAATGAGTTAGAGCGTGTT 59.259 43.478 0.00 0.00 0.00 3.32
3605 4045 4.348168 CCTGATGCTACCCAAGGTACTATT 59.652 45.833 0.00 0.00 38.49 1.73
3618 4058 5.614324 AGGTACTATTGTGCAGCATCTTA 57.386 39.130 0.00 0.00 36.02 2.10
3707 4147 5.260424 TGTACCAGTTATGCAATGGAATGT 58.740 37.500 15.16 0.56 37.54 2.71
3925 4588 3.380320 AGGGTTAAACGGATTATGCTTGC 59.620 43.478 0.00 0.00 0.00 4.01
3929 4592 0.740737 AACGGATTATGCTTGCCTGC 59.259 50.000 0.00 0.00 0.00 4.85
3951 4615 7.542130 CCTGCTTGTTTTATCCTGTGAATTTAC 59.458 37.037 0.00 0.00 0.00 2.01
3954 4618 5.945155 TGTTTTATCCTGTGAATTTACGGC 58.055 37.500 3.67 0.00 0.00 5.68
3975 4639 2.754552 CGTGTGGATTGGTGGATTTGAT 59.245 45.455 0.00 0.00 0.00 2.57
3976 4640 3.193267 CGTGTGGATTGGTGGATTTGATT 59.807 43.478 0.00 0.00 0.00 2.57
4010 4674 3.563808 TGACATGGTGAACTTACTGTTGC 59.436 43.478 0.00 0.00 39.30 4.17
4112 4776 3.163467 GTCACACCCTGGTTAGTAGTCT 58.837 50.000 0.00 0.00 0.00 3.24
4220 4888 1.407989 GGAAGATGCCACAAGGAGAGG 60.408 57.143 0.00 0.00 36.89 3.69
4244 4912 1.846712 GCTTTGAGGGAGCCTGGACT 61.847 60.000 0.00 0.00 31.76 3.85
4390 5067 9.759259 GTTTCCTCAAACAAAAATTTTCTTCTG 57.241 29.630 3.41 1.38 41.53 3.02
4408 5085 2.435805 TCTGTTGACAGTGAGCTCCTTT 59.564 45.455 12.15 0.69 44.12 3.11
4518 5195 1.068741 GCGGTACATCCTCGATCCTTT 59.931 52.381 0.00 0.00 0.00 3.11
4541 5218 5.216622 TGTAGCCTATTATGGGTTCTCACT 58.783 41.667 0.00 0.00 38.86 3.41
4561 5238 2.416547 CTGTGTTCATCTTTGGCTACCG 59.583 50.000 0.00 0.00 0.00 4.02
4598 5278 1.005156 GATCTGAGAGGCCGGATGC 60.005 63.158 5.05 0.00 40.16 3.91
4684 5364 2.364632 CGAATTGGGGTAAGTGATGCA 58.635 47.619 0.00 0.00 0.00 3.96
4771 5452 3.861840 AGAGTAAATCCATGTGTGTCGG 58.138 45.455 0.00 0.00 0.00 4.79
4840 5521 2.263540 GGCGCCTGAAGGTCGTTA 59.736 61.111 22.15 0.00 37.17 3.18
4841 5522 1.375013 GGCGCCTGAAGGTCGTTAA 60.375 57.895 22.15 0.00 37.17 2.01
4843 5524 0.373716 GCGCCTGAAGGTCGTTAATG 59.626 55.000 0.00 0.00 37.17 1.90
4844 5525 1.006832 CGCCTGAAGGTCGTTAATGG 58.993 55.000 0.00 0.00 37.57 3.16
4845 5526 1.404986 CGCCTGAAGGTCGTTAATGGA 60.405 52.381 0.00 0.00 37.57 3.41
4995 5708 2.348666 CGTGCTTGTAGTATGAACTGCC 59.651 50.000 0.00 0.00 37.52 4.85
5085 5798 1.407979 CCTCATTTGGCCATTGAGCTC 59.592 52.381 28.60 6.82 36.41 4.09
5088 5801 2.429250 TCATTTGGCCATTGAGCTCATG 59.571 45.455 19.04 16.66 0.00 3.07
5092 5805 1.064240 TGGCCATTGAGCTCATGTCAT 60.064 47.619 19.04 4.86 0.00 3.06
5113 5826 6.312672 GTCATTGTTTGTTTTACCAGCTTGTT 59.687 34.615 0.00 0.00 0.00 2.83
5116 5829 5.164954 TGTTTGTTTTACCAGCTTGTTGTC 58.835 37.500 0.00 0.00 0.00 3.18
5117 5830 3.684103 TGTTTTACCAGCTTGTTGTCG 57.316 42.857 0.00 0.00 0.00 4.35
5120 5833 0.941542 TTACCAGCTTGTTGTCGTGC 59.058 50.000 0.00 0.00 0.00 5.34
5121 5834 0.882927 TACCAGCTTGTTGTCGTGCC 60.883 55.000 0.00 0.00 0.00 5.01
5126 5839 1.941812 CTTGTTGTCGTGCCTGTCC 59.058 57.895 0.00 0.00 0.00 4.02
5141 5854 2.061773 CTGTCCGCTAGTTCTGTGTTG 58.938 52.381 0.00 0.00 0.00 3.33
5142 5855 1.270094 TGTCCGCTAGTTCTGTGTTGG 60.270 52.381 0.00 0.00 0.00 3.77
5143 5856 0.320421 TCCGCTAGTTCTGTGTTGGC 60.320 55.000 0.00 0.00 0.00 4.52
5144 5857 1.298859 CCGCTAGTTCTGTGTTGGCC 61.299 60.000 0.00 0.00 0.00 5.36
5145 5858 0.320771 CGCTAGTTCTGTGTTGGCCT 60.321 55.000 3.32 0.00 0.00 5.19
5146 5859 1.160137 GCTAGTTCTGTGTTGGCCTG 58.840 55.000 3.32 0.00 0.00 4.85
5147 5860 1.813513 CTAGTTCTGTGTTGGCCTGG 58.186 55.000 3.32 0.00 0.00 4.45
5150 5863 0.668535 GTTCTGTGTTGGCCTGGTTC 59.331 55.000 3.32 0.00 0.00 3.62
5151 5864 0.550914 TTCTGTGTTGGCCTGGTTCT 59.449 50.000 3.32 0.00 0.00 3.01
5153 5866 1.064017 TCTGTGTTGGCCTGGTTCTTT 60.064 47.619 3.32 0.00 0.00 2.52
5154 5867 1.338020 CTGTGTTGGCCTGGTTCTTTC 59.662 52.381 3.32 0.00 0.00 2.62
5155 5868 1.064017 TGTGTTGGCCTGGTTCTTTCT 60.064 47.619 3.32 0.00 0.00 2.52
5157 5870 0.875059 GTTGGCCTGGTTCTTTCTCG 59.125 55.000 3.32 0.00 0.00 4.04
5159 5872 1.302511 GGCCTGGTTCTTTCTCGCA 60.303 57.895 0.00 0.00 0.00 5.10
5160 5873 0.678048 GGCCTGGTTCTTTCTCGCAT 60.678 55.000 0.00 0.00 0.00 4.73
5161 5874 1.168714 GCCTGGTTCTTTCTCGCATT 58.831 50.000 0.00 0.00 0.00 3.56
5162 5875 1.135575 GCCTGGTTCTTTCTCGCATTG 60.136 52.381 0.00 0.00 0.00 2.82
5163 5876 2.154462 CCTGGTTCTTTCTCGCATTGT 58.846 47.619 0.00 0.00 0.00 2.71
5164 5877 2.160417 CCTGGTTCTTTCTCGCATTGTC 59.840 50.000 0.00 0.00 0.00 3.18
5165 5878 1.798223 TGGTTCTTTCTCGCATTGTCG 59.202 47.619 0.00 0.00 0.00 4.35
5166 5879 1.798813 GGTTCTTTCTCGCATTGTCGT 59.201 47.619 0.00 0.00 0.00 4.34
5167 5880 2.159827 GGTTCTTTCTCGCATTGTCGTC 60.160 50.000 0.00 0.00 0.00 4.20
5168 5881 2.724977 TCTTTCTCGCATTGTCGTCT 57.275 45.000 0.00 0.00 0.00 4.18
5169 5882 3.842732 TCTTTCTCGCATTGTCGTCTA 57.157 42.857 0.00 0.00 0.00 2.59
5170 5883 4.371855 TCTTTCTCGCATTGTCGTCTAT 57.628 40.909 0.00 0.00 0.00 1.98
5171 5884 4.105486 TCTTTCTCGCATTGTCGTCTATG 58.895 43.478 0.30 0.30 0.00 2.23
5172 5885 2.492019 TCTCGCATTGTCGTCTATGG 57.508 50.000 6.28 0.00 0.00 2.74
5173 5886 2.021457 TCTCGCATTGTCGTCTATGGA 58.979 47.619 6.28 2.18 0.00 3.41
5174 5887 2.033424 TCTCGCATTGTCGTCTATGGAG 59.967 50.000 6.28 9.79 32.15 3.86
5175 5888 0.855349 CGCATTGTCGTCTATGGAGC 59.145 55.000 6.28 0.00 0.00 4.70
5176 5889 1.536922 CGCATTGTCGTCTATGGAGCT 60.537 52.381 6.28 0.00 0.00 4.09
5177 5890 1.863454 GCATTGTCGTCTATGGAGCTG 59.137 52.381 0.00 0.00 0.00 4.24
5178 5891 1.863454 CATTGTCGTCTATGGAGCTGC 59.137 52.381 0.00 0.00 0.00 5.25
5179 5892 0.894835 TTGTCGTCTATGGAGCTGCA 59.105 50.000 11.44 11.44 0.00 4.41
5180 5893 0.894835 TGTCGTCTATGGAGCTGCAA 59.105 50.000 13.45 0.73 0.00 4.08
5181 5894 1.275010 TGTCGTCTATGGAGCTGCAAA 59.725 47.619 13.45 0.00 0.00 3.68
5182 5895 2.093500 TGTCGTCTATGGAGCTGCAAAT 60.093 45.455 13.45 0.00 0.00 2.32
5183 5896 2.939103 GTCGTCTATGGAGCTGCAAATT 59.061 45.455 13.45 0.00 0.00 1.82
5184 5897 3.001736 GTCGTCTATGGAGCTGCAAATTC 59.998 47.826 13.45 2.97 0.00 2.17
5185 5898 3.118629 TCGTCTATGGAGCTGCAAATTCT 60.119 43.478 13.45 0.00 0.00 2.40
5186 5899 3.624861 CGTCTATGGAGCTGCAAATTCTT 59.375 43.478 13.45 0.00 0.00 2.52
5187 5900 4.260538 CGTCTATGGAGCTGCAAATTCTTC 60.261 45.833 13.45 0.00 0.00 2.87
5188 5901 4.637534 GTCTATGGAGCTGCAAATTCTTCA 59.362 41.667 13.45 0.00 0.00 3.02
5189 5902 3.863142 ATGGAGCTGCAAATTCTTCAC 57.137 42.857 13.45 0.00 0.00 3.18
5190 5903 1.536766 TGGAGCTGCAAATTCTTCACG 59.463 47.619 5.01 0.00 0.00 4.35
5191 5904 1.135575 GGAGCTGCAAATTCTTCACGG 60.136 52.381 0.00 0.00 0.00 4.94
5192 5905 1.806542 GAGCTGCAAATTCTTCACGGA 59.193 47.619 1.02 0.00 0.00 4.69
5193 5906 2.421424 GAGCTGCAAATTCTTCACGGAT 59.579 45.455 1.02 0.00 0.00 4.18
5194 5907 2.421424 AGCTGCAAATTCTTCACGGATC 59.579 45.455 1.02 0.00 0.00 3.36
5195 5908 2.421424 GCTGCAAATTCTTCACGGATCT 59.579 45.455 0.00 0.00 0.00 2.75
5196 5909 3.623060 GCTGCAAATTCTTCACGGATCTA 59.377 43.478 0.00 0.00 0.00 1.98
5197 5910 4.494855 GCTGCAAATTCTTCACGGATCTAC 60.495 45.833 0.00 0.00 0.00 2.59
5198 5911 4.574892 TGCAAATTCTTCACGGATCTACA 58.425 39.130 0.00 0.00 0.00 2.74
5199 5912 4.391830 TGCAAATTCTTCACGGATCTACAC 59.608 41.667 0.00 0.00 0.00 2.90
5200 5913 4.492570 GCAAATTCTTCACGGATCTACACG 60.493 45.833 0.00 0.00 0.00 4.49
5201 5914 2.273370 TTCTTCACGGATCTACACGC 57.727 50.000 0.00 0.00 0.00 5.34
5202 5915 1.460504 TCTTCACGGATCTACACGCT 58.539 50.000 0.00 0.00 0.00 5.07
5203 5916 2.635714 TCTTCACGGATCTACACGCTA 58.364 47.619 0.00 0.00 0.00 4.26
5204 5917 2.612672 TCTTCACGGATCTACACGCTAG 59.387 50.000 0.00 0.00 0.00 3.42
5205 5918 2.320745 TCACGGATCTACACGCTAGA 57.679 50.000 0.00 0.00 0.00 2.43
5206 5919 2.635714 TCACGGATCTACACGCTAGAA 58.364 47.619 0.00 0.00 0.00 2.10
5211 5924 4.142227 ACGGATCTACACGCTAGAACAAAT 60.142 41.667 0.00 0.00 0.00 2.32
5223 5936 8.285394 CACGCTAGAACAAATGAATATAGCATT 58.715 33.333 13.59 0.00 37.56 3.56
5224 5937 8.840321 ACGCTAGAACAAATGAATATAGCATTT 58.160 29.630 9.48 9.48 44.35 2.32
5231 5944 8.902540 ACAAATGAATATAGCATTTACCGAGA 57.097 30.769 13.17 0.00 42.33 4.04
5263 6009 6.072112 AGTTTTGTATCATCGTTTGCTGTT 57.928 33.333 0.00 0.00 0.00 3.16
5264 6010 6.503524 AGTTTTGTATCATCGTTTGCTGTTT 58.496 32.000 0.00 0.00 0.00 2.83
5282 6062 7.967771 GCTGTTTGCATTTTGTTTTTAACAT 57.032 28.000 0.00 0.00 40.55 2.71
5284 6064 9.157259 GCTGTTTGCATTTTGTTTTTAACATAG 57.843 29.630 0.00 0.00 40.55 2.23
5293 6073 8.770850 TTTTGTTTTTAACATAGTACAGACGC 57.229 30.769 0.00 0.00 41.79 5.19
5294 6074 7.479897 TTGTTTTTAACATAGTACAGACGCA 57.520 32.000 0.00 0.00 41.79 5.24
5295 6075 7.479897 TGTTTTTAACATAGTACAGACGCAA 57.520 32.000 0.00 0.00 36.25 4.85
5296 6076 7.569297 TGTTTTTAACATAGTACAGACGCAAG 58.431 34.615 0.00 0.00 39.26 4.01
5297 6077 5.773239 TTTAACATAGTACAGACGCAAGC 57.227 39.130 0.00 0.00 45.62 4.01
5298 6078 1.909376 ACATAGTACAGACGCAAGCG 58.091 50.000 13.50 13.50 46.03 4.68
5299 6079 0.572590 CATAGTACAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
5300 6080 0.172578 ATAGTACAGACGCAAGCGCA 59.827 50.000 15.09 0.00 44.19 6.09
5301 6081 0.172578 TAGTACAGACGCAAGCGCAT 59.827 50.000 15.09 0.00 44.19 4.73
5302 6082 0.670546 AGTACAGACGCAAGCGCATT 60.671 50.000 15.09 0.00 44.19 3.56
5303 6083 0.165944 GTACAGACGCAAGCGCATTT 59.834 50.000 15.09 0.00 44.19 2.32
5304 6084 0.165727 TACAGACGCAAGCGCATTTG 59.834 50.000 15.09 7.72 44.19 2.32
5305 6085 1.207339 CAGACGCAAGCGCATTTGA 59.793 52.632 15.09 0.00 44.19 2.69
5306 6086 0.179181 CAGACGCAAGCGCATTTGAT 60.179 50.000 15.09 0.00 44.19 2.57
5307 6087 0.179181 AGACGCAAGCGCATTTGATG 60.179 50.000 15.09 5.39 44.19 3.07
5323 6103 5.696260 TTTGATGCGTAAATCTCTGTACG 57.304 39.130 0.00 0.00 44.58 3.67
5324 6104 4.625972 TGATGCGTAAATCTCTGTACGA 57.374 40.909 7.36 0.00 44.55 3.43
5325 6105 4.989044 TGATGCGTAAATCTCTGTACGAA 58.011 39.130 7.36 0.00 44.55 3.85
5326 6106 5.404096 TGATGCGTAAATCTCTGTACGAAA 58.596 37.500 7.36 0.00 44.55 3.46
5327 6107 5.515270 TGATGCGTAAATCTCTGTACGAAAG 59.485 40.000 7.36 0.00 44.55 2.62
5328 6108 4.801891 TGCGTAAATCTCTGTACGAAAGT 58.198 39.130 7.36 0.00 44.55 2.66
5368 6148 2.095843 GCACGATTTGCGGACGAC 59.904 61.111 0.00 0.00 46.49 4.34
5369 6149 2.390288 CACGATTTGCGGACGACG 59.610 61.111 0.00 0.00 46.49 5.12
5370 6150 2.807895 ACGATTTGCGGACGACGG 60.808 61.111 0.00 0.00 46.49 4.79
5371 6151 3.550992 CGATTTGCGGACGACGGG 61.551 66.667 0.00 0.00 44.51 5.28
5372 6152 2.125832 GATTTGCGGACGACGGGA 60.126 61.111 0.00 0.00 44.51 5.14
5373 6153 2.125673 ATTTGCGGACGACGGGAG 60.126 61.111 0.00 0.00 44.51 4.30
5379 6159 2.753043 GGACGACGGGAGTAGGCA 60.753 66.667 0.00 0.00 46.22 4.75
5380 6160 2.125961 GGACGACGGGAGTAGGCAT 61.126 63.158 0.00 0.00 46.22 4.40
5389 6169 2.693591 CGGGAGTAGGCATCTCTGTTTA 59.306 50.000 8.40 0.00 33.06 2.01
5430 6237 1.818522 CGTACCCCCTACTCCAGCTAG 60.819 61.905 0.00 0.00 0.00 3.42
5539 6347 1.606313 CCAACCAATGGGAACGCCT 60.606 57.895 3.55 0.00 46.27 5.52
5548 6356 1.228459 GGGAACGCCTGGAAAACCT 60.228 57.895 0.00 0.00 0.00 3.50
5563 6396 2.041405 CCTCTCCCTCCCTCCACC 60.041 72.222 0.00 0.00 0.00 4.61
5651 6484 1.684869 CCAATCCACCACCACCATACC 60.685 57.143 0.00 0.00 0.00 2.73
5652 6485 0.629058 AATCCACCACCACCATACCC 59.371 55.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.994578 CACGCTGATGAGGATGATGATC 59.005 50.000 0.00 0.00 0.00 2.92
65 66 2.736721 CTCCTGGACAATGTTGTACACG 59.263 50.000 6.70 4.07 46.59 4.49
71 72 2.189594 TCTGCTCCTGGACAATGTTG 57.810 50.000 0.00 0.00 0.00 3.33
101 102 1.063027 CGACGTATTGGTCTCACGCTA 59.937 52.381 0.00 0.00 39.23 4.26
102 103 0.179171 CGACGTATTGGTCTCACGCT 60.179 55.000 0.00 0.00 39.23 5.07
106 107 3.054166 CAACAACGACGTATTGGTCTCA 58.946 45.455 14.61 0.00 34.75 3.27
120 122 1.056103 CTCGCTCACTCTCAACAACG 58.944 55.000 0.00 0.00 0.00 4.10
125 127 1.474478 GATGGTCTCGCTCACTCTCAA 59.526 52.381 0.00 0.00 0.00 3.02
234 251 6.808008 ATGATCATTCATGGTCCGAATTAC 57.192 37.500 1.18 0.00 41.12 1.89
257 283 0.251297 TTCCGAACGGAGGGAGTACA 60.251 55.000 15.34 0.00 46.06 2.90
260 286 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
261 287 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
262 288 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
263 289 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
265 291 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
266 292 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
267 293 3.124636 CCAAGACAAGTAATTCCGAACGG 59.875 47.826 6.94 6.94 0.00 4.44
268 294 3.991773 TCCAAGACAAGTAATTCCGAACG 59.008 43.478 0.00 0.00 0.00 3.95
269 295 7.254795 CCATATCCAAGACAAGTAATTCCGAAC 60.255 40.741 0.00 0.00 0.00 3.95
270 296 6.765989 CCATATCCAAGACAAGTAATTCCGAA 59.234 38.462 0.00 0.00 0.00 4.30
271 297 6.099125 TCCATATCCAAGACAAGTAATTCCGA 59.901 38.462 0.00 0.00 0.00 4.55
272 298 6.288294 TCCATATCCAAGACAAGTAATTCCG 58.712 40.000 0.00 0.00 0.00 4.30
273 299 7.721399 ACATCCATATCCAAGACAAGTAATTCC 59.279 37.037 0.00 0.00 0.00 3.01
274 300 8.682936 ACATCCATATCCAAGACAAGTAATTC 57.317 34.615 0.00 0.00 0.00 2.17
276 302 9.950496 GATACATCCATATCCAAGACAAGTAAT 57.050 33.333 0.00 0.00 0.00 1.89
277 303 9.159254 AGATACATCCATATCCAAGACAAGTAA 57.841 33.333 0.00 0.00 32.76 2.24
278 304 8.727100 AGATACATCCATATCCAAGACAAGTA 57.273 34.615 0.00 0.00 32.76 2.24
279 305 7.623999 AGATACATCCATATCCAAGACAAGT 57.376 36.000 0.00 0.00 32.76 3.16
282 308 9.778741 GTTTTAGATACATCCATATCCAAGACA 57.221 33.333 0.00 0.00 32.76 3.41
314 340 9.367160 TCACAGAAATGGATGTATCTAGATGTA 57.633 33.333 15.79 4.44 0.00 2.29
315 341 8.147058 GTCACAGAAATGGATGTATCTAGATGT 58.853 37.037 15.79 1.25 0.00 3.06
316 342 8.146412 TGTCACAGAAATGGATGTATCTAGATG 58.854 37.037 15.79 0.00 0.00 2.90
317 343 8.255111 TGTCACAGAAATGGATGTATCTAGAT 57.745 34.615 10.73 10.73 0.00 1.98
318 344 7.660030 TGTCACAGAAATGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
319 345 7.984050 ACTTGTCACAGAAATGGATGTATCTAG 59.016 37.037 0.00 0.00 0.00 2.43
320 346 7.851228 ACTTGTCACAGAAATGGATGTATCTA 58.149 34.615 0.00 0.00 0.00 1.98
321 347 6.715280 ACTTGTCACAGAAATGGATGTATCT 58.285 36.000 0.00 0.00 0.00 1.98
322 348 6.992063 ACTTGTCACAGAAATGGATGTATC 57.008 37.500 0.00 0.00 0.00 2.24
323 349 9.466497 AATTACTTGTCACAGAAATGGATGTAT 57.534 29.630 0.00 0.00 0.00 2.29
324 350 8.862325 AATTACTTGTCACAGAAATGGATGTA 57.138 30.769 0.00 0.00 0.00 2.29
325 351 7.667219 AGAATTACTTGTCACAGAAATGGATGT 59.333 33.333 0.00 0.00 0.00 3.06
326 352 7.966753 CAGAATTACTTGTCACAGAAATGGATG 59.033 37.037 0.00 0.00 0.00 3.51
327 353 7.884877 TCAGAATTACTTGTCACAGAAATGGAT 59.115 33.333 0.00 0.00 0.00 3.41
328 354 7.223584 TCAGAATTACTTGTCACAGAAATGGA 58.776 34.615 0.00 0.00 0.00 3.41
329 355 7.439157 TCAGAATTACTTGTCACAGAAATGG 57.561 36.000 0.00 0.00 0.00 3.16
330 356 7.531871 CGTTCAGAATTACTTGTCACAGAAATG 59.468 37.037 0.00 0.00 0.00 2.32
331 357 7.307989 CCGTTCAGAATTACTTGTCACAGAAAT 60.308 37.037 0.00 0.00 0.00 2.17
332 358 6.018262 CCGTTCAGAATTACTTGTCACAGAAA 60.018 38.462 0.00 0.00 0.00 2.52
333 359 5.465390 CCGTTCAGAATTACTTGTCACAGAA 59.535 40.000 0.00 0.00 0.00 3.02
334 360 4.988540 CCGTTCAGAATTACTTGTCACAGA 59.011 41.667 0.00 0.00 0.00 3.41
335 361 4.988540 TCCGTTCAGAATTACTTGTCACAG 59.011 41.667 0.00 0.00 0.00 3.66
336 362 4.951254 TCCGTTCAGAATTACTTGTCACA 58.049 39.130 0.00 0.00 0.00 3.58
337 363 4.389077 CCTCCGTTCAGAATTACTTGTCAC 59.611 45.833 0.00 0.00 0.00 3.67
338 364 4.282449 TCCTCCGTTCAGAATTACTTGTCA 59.718 41.667 0.00 0.00 0.00 3.58
339 365 4.817517 TCCTCCGTTCAGAATTACTTGTC 58.182 43.478 0.00 0.00 0.00 3.18
340 366 4.884668 TCCTCCGTTCAGAATTACTTGT 57.115 40.909 0.00 0.00 0.00 3.16
341 367 5.238583 ACTTCCTCCGTTCAGAATTACTTG 58.761 41.667 0.00 0.00 0.00 3.16
342 368 5.485209 ACTTCCTCCGTTCAGAATTACTT 57.515 39.130 0.00 0.00 0.00 2.24
343 369 5.394333 GCTACTTCCTCCGTTCAGAATTACT 60.394 44.000 0.00 0.00 0.00 2.24
344 370 4.804665 GCTACTTCCTCCGTTCAGAATTAC 59.195 45.833 0.00 0.00 0.00 1.89
345 371 4.710375 AGCTACTTCCTCCGTTCAGAATTA 59.290 41.667 0.00 0.00 0.00 1.40
346 372 3.515901 AGCTACTTCCTCCGTTCAGAATT 59.484 43.478 0.00 0.00 0.00 2.17
347 373 3.100671 AGCTACTTCCTCCGTTCAGAAT 58.899 45.455 0.00 0.00 0.00 2.40
348 374 2.526432 AGCTACTTCCTCCGTTCAGAA 58.474 47.619 0.00 0.00 0.00 3.02
349 375 2.217510 AGCTACTTCCTCCGTTCAGA 57.782 50.000 0.00 0.00 0.00 3.27
350 376 3.320673 AAAGCTACTTCCTCCGTTCAG 57.679 47.619 0.00 0.00 0.00 3.02
351 377 3.368116 GCTAAAGCTACTTCCTCCGTTCA 60.368 47.826 0.00 0.00 38.21 3.18
352 378 3.188492 GCTAAAGCTACTTCCTCCGTTC 58.812 50.000 0.00 0.00 38.21 3.95
353 379 2.416972 CGCTAAAGCTACTTCCTCCGTT 60.417 50.000 0.00 0.00 39.32 4.44
354 380 1.134560 CGCTAAAGCTACTTCCTCCGT 59.865 52.381 0.00 0.00 39.32 4.69
355 381 1.841450 CGCTAAAGCTACTTCCTCCG 58.159 55.000 0.00 0.00 39.32 4.63
356 382 1.134788 TGCGCTAAAGCTACTTCCTCC 60.135 52.381 9.73 0.00 39.32 4.30
357 383 1.927838 GTGCGCTAAAGCTACTTCCTC 59.072 52.381 9.73 0.00 39.32 3.71
358 384 1.550976 AGTGCGCTAAAGCTACTTCCT 59.449 47.619 9.73 0.00 39.32 3.36
359 385 2.011540 AGTGCGCTAAAGCTACTTCC 57.988 50.000 9.73 0.00 39.32 3.46
360 386 2.474691 GCAAGTGCGCTAAAGCTACTTC 60.475 50.000 9.73 9.01 41.09 3.01
361 387 1.464997 GCAAGTGCGCTAAAGCTACTT 59.535 47.619 9.73 4.94 42.56 2.24
362 388 1.079503 GCAAGTGCGCTAAAGCTACT 58.920 50.000 9.73 0.00 37.60 2.57
403 429 3.730761 GCCAGACAACAGCGGCAG 61.731 66.667 1.45 0.00 44.25 4.85
418 444 2.050985 GCAGTTCACACTTGCGCC 60.051 61.111 4.18 0.00 0.00 6.53
422 448 1.462283 CTCATCCGCAGTTCACACTTG 59.538 52.381 0.00 0.00 0.00 3.16
432 458 0.529833 ACTCACTGACTCATCCGCAG 59.470 55.000 0.00 0.00 35.81 5.18
443 469 2.574018 CCTCGGCCACACTCACTGA 61.574 63.158 2.24 0.00 0.00 3.41
444 470 1.532604 TACCTCGGCCACACTCACTG 61.533 60.000 2.24 0.00 0.00 3.66
500 526 3.423154 GAACGCCAACAGGAGCCG 61.423 66.667 0.00 0.00 0.00 5.52
503 529 2.317609 CCACGAACGCCAACAGGAG 61.318 63.158 0.00 0.00 0.00 3.69
511 538 3.723348 GTTCCAGCCACGAACGCC 61.723 66.667 0.00 0.00 31.07 5.68
525 552 2.223377 CACACGCCTACCTTTCAAGTTC 59.777 50.000 0.00 0.00 0.00 3.01
555 582 2.114670 CAAGCCAACATCGCCCGAT 61.115 57.895 0.00 0.00 34.81 4.18
556 583 2.745884 CAAGCCAACATCGCCCGA 60.746 61.111 0.00 0.00 0.00 5.14
557 584 2.745884 TCAAGCCAACATCGCCCG 60.746 61.111 0.00 0.00 0.00 6.13
634 661 2.754012 TTCCAAGCCCATTCCCATAG 57.246 50.000 0.00 0.00 0.00 2.23
636 663 2.574074 AATTCCAAGCCCATTCCCAT 57.426 45.000 0.00 0.00 0.00 4.00
637 664 3.704545 ATAATTCCAAGCCCATTCCCA 57.295 42.857 0.00 0.00 0.00 4.37
638 665 3.832490 GGTATAATTCCAAGCCCATTCCC 59.168 47.826 0.00 0.00 0.00 3.97
639 666 4.479158 TGGTATAATTCCAAGCCCATTCC 58.521 43.478 0.00 0.00 31.50 3.01
640 667 5.047092 CCATGGTATAATTCCAAGCCCATTC 60.047 44.000 2.57 0.00 38.52 2.67
641 668 4.840115 CCATGGTATAATTCCAAGCCCATT 59.160 41.667 2.57 0.00 38.52 3.16
642 669 4.107798 TCCATGGTATAATTCCAAGCCCAT 59.892 41.667 12.58 0.00 38.52 4.00
643 670 3.465210 TCCATGGTATAATTCCAAGCCCA 59.535 43.478 12.58 0.00 38.52 5.36
644 671 4.112634 TCCATGGTATAATTCCAAGCCC 57.887 45.455 12.58 0.00 38.52 5.19
645 672 4.706962 GGATCCATGGTATAATTCCAAGCC 59.293 45.833 12.58 0.00 38.52 4.35
647 674 7.892241 AGATTGGATCCATGGTATAATTCCAAG 59.108 37.037 17.06 0.00 42.98 3.61
648 675 7.670979 CAGATTGGATCCATGGTATAATTCCAA 59.329 37.037 17.06 22.00 43.63 3.53
649 676 7.177184 CAGATTGGATCCATGGTATAATTCCA 58.823 38.462 17.06 12.29 39.41 3.53
668 698 0.748005 AACGATTCCCCGGCAGATTG 60.748 55.000 0.00 0.00 0.00 2.67
731 761 7.890515 GGGGGAGTAGTATAATGTTAGTGTAC 58.109 42.308 0.00 0.00 0.00 2.90
753 783 4.788679 AGACAAATATTTAGGAACGGGGG 58.211 43.478 0.00 0.00 0.00 5.40
754 784 6.769134 AAAGACAAATATTTAGGAACGGGG 57.231 37.500 0.00 0.00 0.00 5.73
755 785 9.783256 CTAAAAAGACAAATATTTAGGAACGGG 57.217 33.333 0.00 0.00 33.69 5.28
780 810 9.773328 CGTATGTGTTAATCATTTGAAATGTCT 57.227 29.630 16.62 8.36 0.00 3.41
781 811 9.009327 CCGTATGTGTTAATCATTTGAAATGTC 57.991 33.333 16.62 5.65 0.00 3.06
782 812 8.735315 TCCGTATGTGTTAATCATTTGAAATGT 58.265 29.630 16.62 2.38 0.00 2.71
783 813 9.734620 ATCCGTATGTGTTAATCATTTGAAATG 57.265 29.630 11.54 11.54 0.00 2.32
784 814 9.734620 CATCCGTATGTGTTAATCATTTGAAAT 57.265 29.630 2.37 0.00 0.00 2.17
785 815 8.735315 ACATCCGTATGTGTTAATCATTTGAAA 58.265 29.630 0.00 0.00 44.79 2.69
786 816 8.275015 ACATCCGTATGTGTTAATCATTTGAA 57.725 30.769 0.00 0.00 44.79 2.69
787 817 7.857734 ACATCCGTATGTGTTAATCATTTGA 57.142 32.000 0.00 0.00 44.79 2.69
788 818 9.597999 CATACATCCGTATGTGTTAATCATTTG 57.402 33.333 3.56 0.00 46.70 2.32
829 859 9.436957 ACGAAGTAAAATGAATGAATCTACACT 57.563 29.630 0.00 0.00 41.94 3.55
850 880 5.839262 TTAACAAGTGACTGCATACGAAG 57.161 39.130 0.00 0.00 0.00 3.79
851 881 6.606234 TTTTAACAAGTGACTGCATACGAA 57.394 33.333 0.00 0.00 0.00 3.85
852 882 6.598525 CATTTTAACAAGTGACTGCATACGA 58.401 36.000 0.00 0.00 0.00 3.43
853 883 5.283717 GCATTTTAACAAGTGACTGCATACG 59.716 40.000 0.00 0.00 0.00 3.06
854 884 5.572896 GGCATTTTAACAAGTGACTGCATAC 59.427 40.000 0.00 0.00 0.00 2.39
855 885 5.476599 AGGCATTTTAACAAGTGACTGCATA 59.523 36.000 0.00 0.00 36.63 3.14
856 886 4.281688 AGGCATTTTAACAAGTGACTGCAT 59.718 37.500 0.00 0.00 36.63 3.96
857 887 3.636300 AGGCATTTTAACAAGTGACTGCA 59.364 39.130 0.00 0.00 36.63 4.41
858 888 4.243007 AGGCATTTTAACAAGTGACTGC 57.757 40.909 0.00 0.00 36.63 4.40
859 889 6.801539 TCTAGGCATTTTAACAAGTGACTG 57.198 37.500 0.00 0.00 38.42 3.51
860 890 7.719633 TCTTTCTAGGCATTTTAACAAGTGACT 59.280 33.333 0.00 0.00 40.91 3.41
861 891 7.803659 GTCTTTCTAGGCATTTTAACAAGTGAC 59.196 37.037 0.00 0.00 0.00 3.67
862 892 7.500892 TGTCTTTCTAGGCATTTTAACAAGTGA 59.499 33.333 0.00 0.00 29.10 3.41
863 893 7.648142 TGTCTTTCTAGGCATTTTAACAAGTG 58.352 34.615 0.00 0.00 29.10 3.16
864 894 7.817418 TGTCTTTCTAGGCATTTTAACAAGT 57.183 32.000 0.00 0.00 29.10 3.16
865 895 8.352942 ACTTGTCTTTCTAGGCATTTTAACAAG 58.647 33.333 0.00 0.00 43.26 3.16
866 896 8.232913 ACTTGTCTTTCTAGGCATTTTAACAA 57.767 30.769 0.00 0.00 35.56 2.83
867 897 7.817418 ACTTGTCTTTCTAGGCATTTTAACA 57.183 32.000 0.00 0.00 35.56 2.41
872 902 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
873 903 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
874 904 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
875 905 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
876 906 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
877 907 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
878 908 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
879 909 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
880 910 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
881 911 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
882 912 6.013984 TCCTCCGTTCCTAAATACTTGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
883 913 5.482878 TCCTCCGTTCCTAAATACTTGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
884 914 5.021458 TCCTCCGTTCCTAAATACTTGTCT 58.979 41.667 0.00 0.00 0.00 3.41
885 915 5.334724 TCCTCCGTTCCTAAATACTTGTC 57.665 43.478 0.00 0.00 0.00 3.18
886 916 4.161754 CCTCCTCCGTTCCTAAATACTTGT 59.838 45.833 0.00 0.00 0.00 3.16
887 917 4.443034 CCCTCCTCCGTTCCTAAATACTTG 60.443 50.000 0.00 0.00 0.00 3.16
888 918 3.710165 CCCTCCTCCGTTCCTAAATACTT 59.290 47.826 0.00 0.00 0.00 2.24
889 919 3.052338 TCCCTCCTCCGTTCCTAAATACT 60.052 47.826 0.00 0.00 0.00 2.12
890 920 3.303049 TCCCTCCTCCGTTCCTAAATAC 58.697 50.000 0.00 0.00 0.00 1.89
891 921 3.052338 ACTCCCTCCTCCGTTCCTAAATA 60.052 47.826 0.00 0.00 0.00 1.40
892 922 2.292984 ACTCCCTCCTCCGTTCCTAAAT 60.293 50.000 0.00 0.00 0.00 1.40
893 923 1.078324 ACTCCCTCCTCCGTTCCTAAA 59.922 52.381 0.00 0.00 0.00 1.85
894 924 0.708802 ACTCCCTCCTCCGTTCCTAA 59.291 55.000 0.00 0.00 0.00 2.69
895 925 1.600058 TACTCCCTCCTCCGTTCCTA 58.400 55.000 0.00 0.00 0.00 2.94
896 926 0.935194 ATACTCCCTCCTCCGTTCCT 59.065 55.000 0.00 0.00 0.00 3.36
897 927 1.790818 AATACTCCCTCCTCCGTTCC 58.209 55.000 0.00 0.00 0.00 3.62
898 928 5.548181 AAATAATACTCCCTCCTCCGTTC 57.452 43.478 0.00 0.00 0.00 3.95
899 929 6.141790 AGTAAATAATACTCCCTCCTCCGTT 58.858 40.000 0.00 0.00 0.00 4.44
900 930 5.713807 AGTAAATAATACTCCCTCCTCCGT 58.286 41.667 0.00 0.00 0.00 4.69
901 931 6.947158 ACTAGTAAATAATACTCCCTCCTCCG 59.053 42.308 0.00 0.00 0.00 4.63
902 932 9.819754 TTACTAGTAAATAATACTCCCTCCTCC 57.180 37.037 12.99 0.00 0.00 4.30
1037 1083 1.687493 GAGGTGAGGAGGGAGTGGG 60.687 68.421 0.00 0.00 0.00 4.61
1051 1097 1.198759 TTTTCGCTAGGGGCTGAGGT 61.199 55.000 6.99 0.00 39.13 3.85
1054 1100 1.202651 GCTATTTTCGCTAGGGGCTGA 60.203 52.381 6.99 0.00 39.13 4.26
1056 1102 0.108774 GGCTATTTTCGCTAGGGGCT 59.891 55.000 6.99 0.00 39.13 5.19
1057 1103 0.179029 TGGCTATTTTCGCTAGGGGC 60.179 55.000 6.99 1.05 37.64 5.80
1173 1221 3.353557 GAGGAGGGTGTTTGGGTAATTC 58.646 50.000 0.00 0.00 0.00 2.17
1203 1251 2.426023 GTTCTGCCCTCGTGTGGT 59.574 61.111 0.00 0.00 0.00 4.16
1225 1273 1.576421 GTGCTTGGAAGTTGCGAGG 59.424 57.895 13.05 0.00 0.00 4.63
1227 1275 2.892334 GCGTGCTTGGAAGTTGCGA 61.892 57.895 0.00 0.00 0.00 5.10
1229 1277 2.050077 GGCGTGCTTGGAAGTTGC 60.050 61.111 0.00 0.00 0.00 4.17
1232 1280 4.250305 ACGGGCGTGCTTGGAAGT 62.250 61.111 0.00 0.00 0.00 3.01
1233 1281 3.726517 CACGGGCGTGCTTGGAAG 61.727 66.667 0.00 0.00 39.39 3.46
1389 1438 4.868116 GTGCGGTGTGTGTGGGGT 62.868 66.667 0.00 0.00 0.00 4.95
1599 1654 1.233369 GGGAGAGGAAGGGGATCGA 59.767 63.158 0.00 0.00 0.00 3.59
1646 1705 4.544689 CGGAGGACAGAGAGCGCG 62.545 72.222 0.00 0.00 0.00 6.86
1647 1706 4.863925 GCGGAGGACAGAGAGCGC 62.864 72.222 0.00 0.00 0.00 5.92
1648 1707 3.408501 CTGCGGAGGACAGAGAGCG 62.409 68.421 0.00 0.00 37.32 5.03
1649 1708 2.493973 CTGCGGAGGACAGAGAGC 59.506 66.667 0.00 0.00 37.32 4.09
1654 1713 4.767255 GCCACCTGCGGAGGACAG 62.767 72.222 31.46 17.61 42.93 3.51
1849 1908 3.241515 GATCGGATCGGGGAAGGGC 62.242 68.421 1.62 0.00 0.00 5.19
2031 2095 4.540502 ACCCCTAGATAAATCTTATGGCCC 59.459 45.833 0.00 0.00 38.32 5.80
2048 2112 3.887916 ACAAAACAGGCTTAACCCCTA 57.112 42.857 0.00 0.00 40.58 3.53
2053 2117 9.961265 AGATAAACTAAACAAAACAGGCTTAAC 57.039 29.630 0.00 0.00 0.00 2.01
2077 2141 2.176314 ATCACTTCAGGCAGCGCAGA 62.176 55.000 11.47 0.00 0.00 4.26
2085 2149 1.180029 AATGGTGCATCACTTCAGGC 58.820 50.000 0.00 0.00 34.40 4.85
2086 2150 3.087031 AGAAATGGTGCATCACTTCAGG 58.913 45.455 22.04 0.00 34.40 3.86
2092 2156 5.824904 AAGATACAGAAATGGTGCATCAC 57.175 39.130 0.00 0.00 0.00 3.06
2099 2163 6.543831 GCACAAGGATAAGATACAGAAATGGT 59.456 38.462 0.00 0.00 0.00 3.55
2111 2175 1.140852 CCATCCCGCACAAGGATAAGA 59.859 52.381 0.00 0.00 42.41 2.10
2140 2204 6.367695 TCACTCAAGTCAATAATACACGTTGG 59.632 38.462 0.00 0.00 0.00 3.77
2176 2240 4.320870 CAACCACCCGACTAAACAATACT 58.679 43.478 0.00 0.00 0.00 2.12
2189 2253 1.531739 CCAACCATTCCAACCACCCG 61.532 60.000 0.00 0.00 0.00 5.28
2203 2267 4.937201 AACAATTTTCTCTGGACCAACC 57.063 40.909 0.00 0.00 39.54 3.77
2246 2310 4.708421 ACAGCAATAATCAAGCACCAGATT 59.292 37.500 0.00 0.00 38.05 2.40
2249 2313 3.441222 TCACAGCAATAATCAAGCACCAG 59.559 43.478 0.00 0.00 0.00 4.00
2253 2317 3.382227 CCCATCACAGCAATAATCAAGCA 59.618 43.478 0.00 0.00 0.00 3.91
2275 2339 4.034048 CCGCAATAACTGTCTTGGATGTAC 59.966 45.833 5.54 0.00 0.00 2.90
2289 2353 2.792542 GCACTCATGAAGCCGCAATAAC 60.793 50.000 8.27 0.00 0.00 1.89
2290 2354 1.401552 GCACTCATGAAGCCGCAATAA 59.598 47.619 8.27 0.00 0.00 1.40
2341 2405 6.734502 ATGGCTATATCAGATCAGATCAGG 57.265 41.667 13.14 4.62 0.00 3.86
2408 2474 3.253188 GTCATTAGCACACCAACACATGT 59.747 43.478 0.00 0.00 0.00 3.21
2430 2496 2.292828 ACACCATTTCCCCTGAACTG 57.707 50.000 0.00 0.00 32.52 3.16
2444 2510 6.710278 TCATCATTACTTGATCAGAACACCA 58.290 36.000 0.00 0.00 43.40 4.17
2446 2512 8.886719 TCAATCATCATTACTTGATCAGAACAC 58.113 33.333 0.00 0.00 43.40 3.32
2462 2528 6.008331 CCCCACACATAGATTCAATCATCAT 58.992 40.000 0.00 0.00 0.00 2.45
2535 2602 9.831737 CAATCTAGGTAGAAGTTTTTGTGATTG 57.168 33.333 0.00 0.00 35.69 2.67
2536 2603 9.574516 ACAATCTAGGTAGAAGTTTTTGTGATT 57.425 29.630 3.30 0.00 32.44 2.57
2645 2712 9.790389 ACAACAGTTGTTAATGTTTTATTCGAA 57.210 25.926 13.53 0.00 42.22 3.71
2705 2811 7.714377 ACAGATTTTAGACAGCCTATGAGAATG 59.286 37.037 0.00 0.00 0.00 2.67
2873 2979 2.071540 ACAACACTGCATCTGTCATCG 58.928 47.619 0.00 0.00 0.00 3.84
2876 2982 4.450976 ACTAAACAACACTGCATCTGTCA 58.549 39.130 0.00 0.00 0.00 3.58
2889 2995 6.644248 ATTCCAACTACCCAACTAAACAAC 57.356 37.500 0.00 0.00 0.00 3.32
2905 3011 3.921677 TGTCTCGACCAACTATTCCAAC 58.078 45.455 0.00 0.00 0.00 3.77
2918 3024 9.490663 CCATTCTATAAACAATTTTGTCTCGAC 57.509 33.333 0.00 0.00 41.31 4.20
2920 3026 9.277565 CACCATTCTATAAACAATTTTGTCTCG 57.722 33.333 0.00 0.00 41.31 4.04
2928 3034 9.874205 CACCAAATCACCATTCTATAAACAATT 57.126 29.630 0.00 0.00 0.00 2.32
2944 3070 3.632145 AGCCCGATATTTCACCAAATCAC 59.368 43.478 0.00 0.00 33.95 3.06
2946 3072 4.097892 ACAAGCCCGATATTTCACCAAATC 59.902 41.667 0.00 0.00 33.95 2.17
2984 3110 6.373779 CCGCAATAATTGTCTTGGATGTATC 58.626 40.000 0.00 0.00 0.00 2.24
3092 3218 3.519913 ACCATTTCCCCTGAACTCTAGTC 59.480 47.826 0.00 0.00 0.00 2.59
3095 3221 3.256704 ACACCATTTCCCCTGAACTCTA 58.743 45.455 0.00 0.00 0.00 2.43
3097 3223 2.586648 ACACCATTTCCCCTGAACTC 57.413 50.000 0.00 0.00 0.00 3.01
3115 3241 6.507023 AGAAACAATGTGAATGGACAAGAAC 58.493 36.000 0.00 0.00 0.00 3.01
3166 3383 8.206867 AGATAACTGTGCAAAGCATCTAGATTA 58.793 33.333 16.44 1.79 41.91 1.75
3218 3435 3.571401 AGGCAAGTTTGAGGACAATTCTG 59.429 43.478 0.00 0.00 35.85 3.02
3222 3439 2.519013 GGAGGCAAGTTTGAGGACAAT 58.481 47.619 0.00 0.00 35.85 2.71
3224 3441 0.110486 GGGAGGCAAGTTTGAGGACA 59.890 55.000 0.00 0.00 0.00 4.02
3225 3442 0.110486 TGGGAGGCAAGTTTGAGGAC 59.890 55.000 0.00 0.00 0.00 3.85
3226 3443 0.850100 TTGGGAGGCAAGTTTGAGGA 59.150 50.000 0.00 0.00 0.00 3.71
3227 3444 1.928868 ATTGGGAGGCAAGTTTGAGG 58.071 50.000 0.00 0.00 0.00 3.86
3228 3445 3.955471 TCTATTGGGAGGCAAGTTTGAG 58.045 45.455 0.00 0.00 0.00 3.02
3229 3446 4.591321 ATCTATTGGGAGGCAAGTTTGA 57.409 40.909 0.00 0.00 0.00 2.69
3248 3465 8.926710 CATGAAGATAAACGGTGACCTAATATC 58.073 37.037 0.00 4.85 0.00 1.63
3274 3705 4.333926 GGATCACATAGTTCAGCCAAAGAC 59.666 45.833 0.00 0.00 0.00 3.01
3326 3757 9.476202 GTTAAATATTATTCCCAATCAACAGCC 57.524 33.333 0.00 0.00 0.00 4.85
3384 3815 1.949525 ACTCATTCACACACAACAGGC 59.050 47.619 0.00 0.00 0.00 4.85
3415 3847 4.284490 AGCACTATGAGAAGACAAGGACAA 59.716 41.667 0.00 0.00 0.00 3.18
3605 4045 8.900983 TGTGTTAATATATAAGATGCTGCACA 57.099 30.769 3.57 0.00 0.00 4.57
3684 4124 5.260424 ACATTCCATTGCATAACTGGTACA 58.740 37.500 0.00 0.00 0.00 2.90
3799 4311 7.104290 AGGTACACCTAAACTAAGAGAAATGC 58.896 38.462 0.00 0.00 46.48 3.56
3826 4338 7.064253 ACCGAGACATAAAACTTAAGAATTCCG 59.936 37.037 10.09 1.69 0.00 4.30
3925 4588 5.649782 ATTCACAGGATAAAACAAGCAGG 57.350 39.130 0.00 0.00 0.00 4.85
3929 4592 6.526674 GCCGTAAATTCACAGGATAAAACAAG 59.473 38.462 0.00 0.00 0.00 3.16
3951 4615 3.430862 CCACCAATCCACACGCCG 61.431 66.667 0.00 0.00 0.00 6.46
3954 4618 2.158559 TCAAATCCACCAATCCACACG 58.841 47.619 0.00 0.00 0.00 4.49
3976 4640 2.890311 CACCATGTCAGCCAGGTAAAAA 59.110 45.455 0.00 0.00 32.01 1.94
4010 4674 0.177604 GAGGTGGTCAGAGCCTGATG 59.822 60.000 7.95 0.00 42.73 3.07
4112 4776 6.405731 GCCCAACATGATAATTTGAGCAGTTA 60.406 38.462 0.00 0.00 0.00 2.24
4121 4785 4.164604 AAGCATGGCCCAACATGATAATTT 59.835 37.500 10.11 0.00 45.78 1.82
4220 4888 2.436824 GCTCCCTCAAAGCCGGAC 60.437 66.667 5.05 0.00 33.53 4.79
4244 4912 1.073125 TCGAAGATCAAAGGGTTGGCA 59.927 47.619 0.00 0.00 35.29 4.92
4339 5007 4.463539 AGAACAGCATATCAACATGGCAAA 59.536 37.500 0.00 0.00 0.00 3.68
4390 5067 2.289002 CACAAAGGAGCTCACTGTCAAC 59.711 50.000 17.19 0.00 0.00 3.18
4408 5085 2.231380 GGCCTTCCTTCTCCCCACA 61.231 63.158 0.00 0.00 0.00 4.17
4518 5195 5.070446 CAGTGAGAACCCATAATAGGCTACA 59.930 44.000 0.00 0.00 0.00 2.74
4541 5218 2.224426 ACGGTAGCCAAAGATGAACACA 60.224 45.455 0.00 0.00 0.00 3.72
4561 5238 4.937620 AGATCACACACATCACATTGGTAC 59.062 41.667 0.00 0.00 0.00 3.34
4598 5278 4.643334 TCCTCATCCTGCAAAATCAATGAG 59.357 41.667 0.00 0.00 39.71 2.90
4661 5341 3.820557 CATCACTTACCCCAATTCGGAT 58.179 45.455 0.00 0.00 36.56 4.18
4747 5427 4.620567 CGACACACATGGATTTACTCTCCA 60.621 45.833 0.00 0.00 46.45 3.86
4771 5452 3.735746 CCTCGCCAAATCTGAAAAACAAC 59.264 43.478 0.00 0.00 0.00 3.32
4838 5519 9.610705 CATGATCTTCTTCTTCTTCTCCATTAA 57.389 33.333 0.00 0.00 0.00 1.40
4840 5521 7.859540 TCATGATCTTCTTCTTCTTCTCCATT 58.140 34.615 0.00 0.00 0.00 3.16
4841 5522 7.434927 TCATGATCTTCTTCTTCTTCTCCAT 57.565 36.000 0.00 0.00 0.00 3.41
4843 5524 7.555087 TCTTCATGATCTTCTTCTTCTTCTCC 58.445 38.462 0.00 0.00 0.00 3.71
4844 5525 9.090692 CTTCTTCATGATCTTCTTCTTCTTCTC 57.909 37.037 0.00 0.00 0.00 2.87
4845 5526 8.814931 TCTTCTTCATGATCTTCTTCTTCTTCT 58.185 33.333 0.00 0.00 0.00 2.85
4995 5708 5.121768 CCGGAAAGGAACTACATAACACTTG 59.878 44.000 0.00 0.00 45.00 3.16
5077 5790 5.717078 ACAAACAATGACATGAGCTCAAT 57.283 34.783 22.50 12.35 0.00 2.57
5079 5792 5.518848 AAACAAACAATGACATGAGCTCA 57.481 34.783 20.79 20.79 0.00 4.26
5085 5798 5.984926 AGCTGGTAAAACAAACAATGACATG 59.015 36.000 0.00 0.00 0.00 3.21
5088 5801 5.810074 ACAAGCTGGTAAAACAAACAATGAC 59.190 36.000 0.00 0.00 0.00 3.06
5092 5805 5.542779 ACAACAAGCTGGTAAAACAAACAA 58.457 33.333 0.00 0.00 0.00 2.83
5113 5826 2.986979 TAGCGGACAGGCACGACA 60.987 61.111 0.00 0.00 34.64 4.35
5116 5829 1.805945 GAACTAGCGGACAGGCACG 60.806 63.158 0.00 0.00 34.64 5.34
5117 5830 0.737715 CAGAACTAGCGGACAGGCAC 60.738 60.000 0.00 0.00 34.64 5.01
5120 5833 0.603569 ACACAGAACTAGCGGACAGG 59.396 55.000 0.00 0.00 0.00 4.00
5121 5834 2.061773 CAACACAGAACTAGCGGACAG 58.938 52.381 0.00 0.00 0.00 3.51
5126 5839 0.320771 AGGCCAACACAGAACTAGCG 60.321 55.000 5.01 0.00 0.00 4.26
5141 5854 0.678048 ATGCGAGAAAGAACCAGGCC 60.678 55.000 0.00 0.00 0.00 5.19
5142 5855 1.135575 CAATGCGAGAAAGAACCAGGC 60.136 52.381 0.00 0.00 0.00 4.85
5143 5856 2.154462 ACAATGCGAGAAAGAACCAGG 58.846 47.619 0.00 0.00 0.00 4.45
5144 5857 2.159787 CGACAATGCGAGAAAGAACCAG 60.160 50.000 0.00 0.00 0.00 4.00
5145 5858 1.798223 CGACAATGCGAGAAAGAACCA 59.202 47.619 0.00 0.00 0.00 3.67
5146 5859 1.798813 ACGACAATGCGAGAAAGAACC 59.201 47.619 4.30 0.00 34.83 3.62
5147 5860 2.731976 AGACGACAATGCGAGAAAGAAC 59.268 45.455 4.30 0.00 34.83 3.01
5150 5863 3.243877 CCATAGACGACAATGCGAGAAAG 59.756 47.826 4.30 0.00 34.83 2.62
5151 5864 3.119280 TCCATAGACGACAATGCGAGAAA 60.119 43.478 4.30 0.00 34.83 2.52
5153 5866 2.021457 TCCATAGACGACAATGCGAGA 58.979 47.619 4.30 0.00 34.83 4.04
5154 5867 2.389059 CTCCATAGACGACAATGCGAG 58.611 52.381 4.30 0.00 34.83 5.03
5155 5868 1.536072 GCTCCATAGACGACAATGCGA 60.536 52.381 4.30 0.00 34.83 5.10
5157 5870 1.863454 CAGCTCCATAGACGACAATGC 59.137 52.381 0.00 0.00 0.00 3.56
5159 5872 1.482182 TGCAGCTCCATAGACGACAAT 59.518 47.619 0.00 0.00 0.00 2.71
5160 5873 0.894835 TGCAGCTCCATAGACGACAA 59.105 50.000 0.00 0.00 0.00 3.18
5161 5874 0.894835 TTGCAGCTCCATAGACGACA 59.105 50.000 0.00 0.00 0.00 4.35
5162 5875 2.010145 TTTGCAGCTCCATAGACGAC 57.990 50.000 0.00 0.00 0.00 4.34
5163 5876 2.988010 ATTTGCAGCTCCATAGACGA 57.012 45.000 0.00 0.00 0.00 4.20
5164 5877 3.201290 AGAATTTGCAGCTCCATAGACG 58.799 45.455 0.00 0.00 0.00 4.18
5165 5878 4.637534 TGAAGAATTTGCAGCTCCATAGAC 59.362 41.667 0.00 0.00 0.00 2.59
5166 5879 4.637534 GTGAAGAATTTGCAGCTCCATAGA 59.362 41.667 0.00 0.00 0.00 1.98
5167 5880 4.495349 CGTGAAGAATTTGCAGCTCCATAG 60.495 45.833 0.00 0.00 0.00 2.23
5168 5881 3.374988 CGTGAAGAATTTGCAGCTCCATA 59.625 43.478 0.00 0.00 0.00 2.74
5169 5882 2.163010 CGTGAAGAATTTGCAGCTCCAT 59.837 45.455 0.00 0.00 0.00 3.41
5170 5883 1.536766 CGTGAAGAATTTGCAGCTCCA 59.463 47.619 0.00 0.00 0.00 3.86
5171 5884 1.135575 CCGTGAAGAATTTGCAGCTCC 60.136 52.381 0.00 0.00 0.00 4.70
5172 5885 1.806542 TCCGTGAAGAATTTGCAGCTC 59.193 47.619 0.00 0.00 0.00 4.09
5173 5886 1.896220 TCCGTGAAGAATTTGCAGCT 58.104 45.000 0.00 0.00 0.00 4.24
5174 5887 2.421424 AGATCCGTGAAGAATTTGCAGC 59.579 45.455 0.00 0.00 0.00 5.25
5175 5888 4.631377 TGTAGATCCGTGAAGAATTTGCAG 59.369 41.667 0.00 0.00 0.00 4.41
5176 5889 4.391830 GTGTAGATCCGTGAAGAATTTGCA 59.608 41.667 0.00 0.00 0.00 4.08
5177 5890 4.492570 CGTGTAGATCCGTGAAGAATTTGC 60.493 45.833 0.00 0.00 0.00 3.68
5178 5891 4.492570 GCGTGTAGATCCGTGAAGAATTTG 60.493 45.833 0.00 0.00 0.00 2.32
5179 5892 3.617263 GCGTGTAGATCCGTGAAGAATTT 59.383 43.478 0.00 0.00 0.00 1.82
5180 5893 3.119101 AGCGTGTAGATCCGTGAAGAATT 60.119 43.478 0.00 0.00 0.00 2.17
5181 5894 2.427453 AGCGTGTAGATCCGTGAAGAAT 59.573 45.455 0.00 0.00 0.00 2.40
5182 5895 1.816835 AGCGTGTAGATCCGTGAAGAA 59.183 47.619 0.00 0.00 0.00 2.52
5183 5896 1.460504 AGCGTGTAGATCCGTGAAGA 58.539 50.000 0.00 0.00 0.00 2.87
5184 5897 2.612672 TCTAGCGTGTAGATCCGTGAAG 59.387 50.000 0.00 0.00 0.00 3.02
5185 5898 2.635714 TCTAGCGTGTAGATCCGTGAA 58.364 47.619 0.00 0.00 0.00 3.18
5186 5899 2.320745 TCTAGCGTGTAGATCCGTGA 57.679 50.000 0.00 0.00 0.00 4.35
5187 5900 2.096980 TGTTCTAGCGTGTAGATCCGTG 59.903 50.000 0.00 0.00 0.00 4.94
5188 5901 2.362736 TGTTCTAGCGTGTAGATCCGT 58.637 47.619 0.00 0.00 0.00 4.69
5189 5902 3.416119 TTGTTCTAGCGTGTAGATCCG 57.584 47.619 0.00 0.00 0.00 4.18
5190 5903 5.348986 TCATTTGTTCTAGCGTGTAGATCC 58.651 41.667 0.00 0.00 0.00 3.36
5191 5904 6.887376 TTCATTTGTTCTAGCGTGTAGATC 57.113 37.500 0.00 0.00 0.00 2.75
5193 5906 9.678941 CTATATTCATTTGTTCTAGCGTGTAGA 57.321 33.333 0.00 0.00 0.00 2.59
5194 5907 8.428536 GCTATATTCATTTGTTCTAGCGTGTAG 58.571 37.037 0.00 0.00 0.00 2.74
5195 5908 7.923878 TGCTATATTCATTTGTTCTAGCGTGTA 59.076 33.333 0.00 0.00 34.32 2.90
5196 5909 6.761242 TGCTATATTCATTTGTTCTAGCGTGT 59.239 34.615 0.00 0.00 34.32 4.49
5197 5910 7.177498 TGCTATATTCATTTGTTCTAGCGTG 57.823 36.000 0.00 0.00 34.32 5.34
5198 5911 7.969536 ATGCTATATTCATTTGTTCTAGCGT 57.030 32.000 0.00 0.00 34.32 5.07
5203 5916 9.337396 TCGGTAAATGCTATATTCATTTGTTCT 57.663 29.630 18.32 3.14 42.24 3.01
5204 5917 9.599322 CTCGGTAAATGCTATATTCATTTGTTC 57.401 33.333 18.32 11.82 42.24 3.18
5205 5918 9.337396 TCTCGGTAAATGCTATATTCATTTGTT 57.663 29.630 18.32 3.64 42.24 2.83
5206 5919 8.774586 GTCTCGGTAAATGCTATATTCATTTGT 58.225 33.333 18.32 4.13 42.24 2.83
5211 5924 9.639601 CTTATGTCTCGGTAAATGCTATATTCA 57.360 33.333 0.00 0.00 0.00 2.57
5223 5936 5.761234 ACAAAACTTGCTTATGTCTCGGTAA 59.239 36.000 0.00 0.00 0.00 2.85
5224 5937 5.302360 ACAAAACTTGCTTATGTCTCGGTA 58.698 37.500 0.00 0.00 0.00 4.02
5226 5939 4.749245 ACAAAACTTGCTTATGTCTCGG 57.251 40.909 0.00 0.00 0.00 4.63
5231 5944 7.377766 ACGATGATACAAAACTTGCTTATGT 57.622 32.000 0.00 0.00 0.00 2.29
5267 6013 9.389570 GCGTCTGTACTATGTTAAAAACAAAAT 57.610 29.630 0.00 0.00 45.86 1.82
5268 6014 8.396390 TGCGTCTGTACTATGTTAAAAACAAAA 58.604 29.630 0.00 0.00 45.86 2.44
5273 6053 6.595794 GCTTGCGTCTGTACTATGTTAAAAA 58.404 36.000 0.00 0.00 0.00 1.94
5274 6054 5.164031 CGCTTGCGTCTGTACTATGTTAAAA 60.164 40.000 6.86 0.00 0.00 1.52
5278 6058 2.259618 CGCTTGCGTCTGTACTATGTT 58.740 47.619 6.86 0.00 0.00 2.71
5280 6060 0.572590 GCGCTTGCGTCTGTACTATG 59.427 55.000 16.38 0.00 0.00 2.23
5281 6061 0.172578 TGCGCTTGCGTCTGTACTAT 59.827 50.000 16.38 0.00 43.34 2.12
5282 6062 0.172578 ATGCGCTTGCGTCTGTACTA 59.827 50.000 16.38 0.00 43.34 1.82
5283 6063 0.670546 AATGCGCTTGCGTCTGTACT 60.671 50.000 16.38 0.00 43.34 2.73
5284 6064 0.165944 AAATGCGCTTGCGTCTGTAC 59.834 50.000 16.38 0.00 43.34 2.90
5285 6065 0.165727 CAAATGCGCTTGCGTCTGTA 59.834 50.000 16.38 0.00 43.34 2.74
5287 6067 0.179181 ATCAAATGCGCTTGCGTCTG 60.179 50.000 16.38 8.66 43.34 3.51
5289 6069 2.271957 CATCAAATGCGCTTGCGTC 58.728 52.632 16.38 9.27 43.34 5.19
5290 6070 4.463597 CATCAAATGCGCTTGCGT 57.536 50.000 16.38 0.00 43.34 5.24
5299 6079 6.019881 TCGTACAGAGATTTACGCATCAAATG 60.020 38.462 0.00 0.00 40.71 2.32
5300 6080 6.040247 TCGTACAGAGATTTACGCATCAAAT 58.960 36.000 0.00 0.00 40.71 2.32
5301 6081 5.404096 TCGTACAGAGATTTACGCATCAAA 58.596 37.500 0.00 0.00 40.71 2.69
5302 6082 4.989044 TCGTACAGAGATTTACGCATCAA 58.011 39.130 0.00 0.00 40.71 2.57
5303 6083 4.625972 TCGTACAGAGATTTACGCATCA 57.374 40.909 0.00 0.00 40.71 3.07
5304 6084 5.515626 ACTTTCGTACAGAGATTTACGCATC 59.484 40.000 0.00 0.00 40.71 3.91
5305 6085 5.288712 CACTTTCGTACAGAGATTTACGCAT 59.711 40.000 0.00 0.00 40.71 4.73
5306 6086 4.619760 CACTTTCGTACAGAGATTTACGCA 59.380 41.667 0.00 0.00 40.71 5.24
5307 6087 4.490479 GCACTTTCGTACAGAGATTTACGC 60.490 45.833 0.00 0.00 40.71 4.42
5308 6088 4.857588 AGCACTTTCGTACAGAGATTTACG 59.142 41.667 0.00 0.00 41.97 3.18
5309 6089 5.634020 ACAGCACTTTCGTACAGAGATTTAC 59.366 40.000 0.00 0.00 0.00 2.01
5310 6090 5.633601 CACAGCACTTTCGTACAGAGATTTA 59.366 40.000 0.00 0.00 0.00 1.40
5311 6091 4.449068 CACAGCACTTTCGTACAGAGATTT 59.551 41.667 0.00 0.00 0.00 2.17
5312 6092 3.990469 CACAGCACTTTCGTACAGAGATT 59.010 43.478 0.00 0.00 0.00 2.40
5313 6093 3.579709 CACAGCACTTTCGTACAGAGAT 58.420 45.455 0.00 0.00 0.00 2.75
5314 6094 2.862530 GCACAGCACTTTCGTACAGAGA 60.863 50.000 0.00 0.00 0.00 3.10
5315 6095 1.457303 GCACAGCACTTTCGTACAGAG 59.543 52.381 0.00 0.00 0.00 3.35
5316 6096 1.202475 TGCACAGCACTTTCGTACAGA 60.202 47.619 0.00 0.00 31.71 3.41
5317 6097 1.217001 TGCACAGCACTTTCGTACAG 58.783 50.000 0.00 0.00 31.71 2.74
5318 6098 3.371087 TGCACAGCACTTTCGTACA 57.629 47.368 0.00 0.00 31.71 2.90
5328 6108 3.332366 CACGTCATGTGCACAGCA 58.668 55.556 25.84 11.11 42.70 4.41
5352 6132 2.390288 CGTCGTCCGCAAATCGTG 59.610 61.111 0.00 0.00 36.19 4.35
5353 6133 2.807895 CCGTCGTCCGCAAATCGT 60.808 61.111 0.00 0.00 36.19 3.73
5354 6134 3.550992 CCCGTCGTCCGCAAATCG 61.551 66.667 0.00 0.00 38.08 3.34
5355 6135 2.125832 TCCCGTCGTCCGCAAATC 60.126 61.111 0.00 0.00 34.38 2.17
5356 6136 1.597797 TACTCCCGTCGTCCGCAAAT 61.598 55.000 0.00 0.00 34.38 2.32
5357 6137 2.203972 CTACTCCCGTCGTCCGCAAA 62.204 60.000 0.00 0.00 34.38 3.68
5358 6138 2.672651 TACTCCCGTCGTCCGCAA 60.673 61.111 0.00 0.00 34.38 4.85
5359 6139 3.129502 CTACTCCCGTCGTCCGCA 61.130 66.667 0.00 0.00 34.38 5.69
5360 6140 3.885521 CCTACTCCCGTCGTCCGC 61.886 72.222 0.00 0.00 34.38 5.54
5361 6141 3.885521 GCCTACTCCCGTCGTCCG 61.886 72.222 0.00 0.00 0.00 4.79
5362 6142 2.073037 GATGCCTACTCCCGTCGTCC 62.073 65.000 0.00 0.00 0.00 4.79
5363 6143 1.102222 AGATGCCTACTCCCGTCGTC 61.102 60.000 0.00 0.00 0.00 4.20
5364 6144 1.076923 AGATGCCTACTCCCGTCGT 60.077 57.895 0.00 0.00 0.00 4.34
5365 6145 0.820074 AGAGATGCCTACTCCCGTCG 60.820 60.000 0.00 0.00 35.27 5.12
5366 6146 0.671251 CAGAGATGCCTACTCCCGTC 59.329 60.000 0.00 0.00 35.27 4.79
5367 6147 0.033011 ACAGAGATGCCTACTCCCGT 60.033 55.000 0.00 0.00 35.27 5.28
5368 6148 1.115467 AACAGAGATGCCTACTCCCG 58.885 55.000 0.00 0.00 35.27 5.14
5369 6149 3.070302 CCTAAACAGAGATGCCTACTCCC 59.930 52.174 0.00 0.00 35.27 4.30
5370 6150 3.493524 GCCTAAACAGAGATGCCTACTCC 60.494 52.174 0.00 0.00 35.27 3.85
5371 6151 3.493524 GGCCTAAACAGAGATGCCTACTC 60.494 52.174 0.00 0.00 35.99 2.59
5372 6152 2.436173 GGCCTAAACAGAGATGCCTACT 59.564 50.000 0.00 0.00 35.99 2.57
5373 6153 2.803492 CGGCCTAAACAGAGATGCCTAC 60.803 54.545 0.00 0.00 36.74 3.18
5374 6154 1.412710 CGGCCTAAACAGAGATGCCTA 59.587 52.381 0.00 0.00 36.74 3.93
5375 6155 0.179000 CGGCCTAAACAGAGATGCCT 59.821 55.000 0.00 0.00 36.74 4.75
5376 6156 0.107654 ACGGCCTAAACAGAGATGCC 60.108 55.000 0.00 0.00 35.55 4.40
5377 6157 1.009829 CACGGCCTAAACAGAGATGC 58.990 55.000 0.00 0.00 0.00 3.91
5378 6158 1.009829 GCACGGCCTAAACAGAGATG 58.990 55.000 0.00 0.00 0.00 2.90
5379 6159 0.613260 TGCACGGCCTAAACAGAGAT 59.387 50.000 0.00 0.00 0.00 2.75
5380 6160 0.613260 ATGCACGGCCTAAACAGAGA 59.387 50.000 0.00 0.00 0.00 3.10
5535 6343 1.377333 GGGAGAGGTTTTCCAGGCG 60.377 63.158 0.00 0.00 43.73 5.52
5537 6345 0.621082 GGAGGGAGAGGTTTTCCAGG 59.379 60.000 0.00 0.00 43.73 4.45
5539 6347 0.196118 AGGGAGGGAGAGGTTTTCCA 59.804 55.000 0.00 0.00 43.73 3.53
5548 6356 3.695825 GGGGTGGAGGGAGGGAGA 61.696 72.222 0.00 0.00 0.00 3.71
5662 6495 1.847798 GCCATGGTGGACTGGTGGTA 61.848 60.000 14.67 0.00 40.96 3.25
5686 6519 2.598467 GAGCGAGGAGGAGGAGGA 59.402 66.667 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.