Multiple sequence alignment - TraesCS2A01G080800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G080800 chr2A 100.000 7756 0 0 439 8194 36651708 36659463 0.000000e+00 14323.0
1 TraesCS2A01G080800 chr2A 95.323 2929 128 7 3200 6127 698096668 698099588 0.000000e+00 4641.0
2 TraesCS2A01G080800 chr2A 92.637 1005 53 9 6372 7372 36719095 36718108 0.000000e+00 1426.0
3 TraesCS2A01G080800 chr2A 83.100 787 105 17 6419 7186 57975585 57976362 0.000000e+00 691.0
4 TraesCS2A01G080800 chr2A 94.545 275 13 2 6089 6362 698099613 698099886 2.730000e-114 424.0
5 TraesCS2A01G080800 chr2A 94.161 274 9 7 6092 6363 764920809 764920541 2.130000e-110 411.0
6 TraesCS2A01G080800 chr2A 86.275 357 45 1 6842 7198 36706265 36705913 1.290000e-102 385.0
7 TraesCS2A01G080800 chr2A 90.164 305 16 9 847 1146 36719389 36719094 1.290000e-102 385.0
8 TraesCS2A01G080800 chr2A 96.847 222 7 0 439 660 749760161 749759940 1.000000e-98 372.0
9 TraesCS2A01G080800 chr2A 96.330 218 8 0 439 656 27854473 27854690 7.820000e-95 359.0
10 TraesCS2A01G080800 chr2A 96.330 218 8 0 439 656 27901151 27901368 7.820000e-95 359.0
11 TraesCS2A01G080800 chr2A 85.981 321 43 2 6446 6765 772663513 772663832 7.870000e-90 342.0
12 TraesCS2A01G080800 chr2A 100.000 172 0 0 1 172 36651270 36651441 1.330000e-82 318.0
13 TraesCS2A01G080800 chr3B 96.879 4678 127 8 1393 6070 42384849 42380191 0.000000e+00 7812.0
14 TraesCS2A01G080800 chr3B 94.550 1835 97 2 1245 3079 70904071 70902240 0.000000e+00 2832.0
15 TraesCS2A01G080800 chr3B 93.773 273 13 4 6091 6363 697089455 697089187 2.750000e-109 407.0
16 TraesCS2A01G080800 chr3B 88.732 71 7 1 3121 3190 42383067 42382997 1.470000e-12 86.1
17 TraesCS2A01G080800 chr5D 90.480 5168 406 60 1222 6367 538262295 538257192 0.000000e+00 6739.0
18 TraesCS2A01G080800 chr1B 94.487 2866 142 7 3174 6024 17522547 17519683 0.000000e+00 4403.0
19 TraesCS2A01G080800 chr1B 95.561 1960 84 2 1226 3185 17524438 17522482 0.000000e+00 3134.0
20 TraesCS2A01G080800 chr1B 95.027 1870 92 1 1227 3096 245929808 245931676 0.000000e+00 2937.0
21 TraesCS2A01G080800 chr2B 91.297 3068 220 31 3333 6362 141716115 141719173 0.000000e+00 4143.0
22 TraesCS2A01G080800 chr2B 94.655 1871 100 0 1226 3096 666634078 666635948 0.000000e+00 2902.0
23 TraesCS2A01G080800 chr2B 89.642 1844 110 36 6377 8194 55887844 55889632 0.000000e+00 2272.0
24 TraesCS2A01G080800 chr2B 90.113 354 31 1 6842 7195 55892020 55892369 2.700000e-124 457.0
25 TraesCS2A01G080800 chr2B 93.091 275 15 4 6090 6362 666639334 666639606 4.610000e-107 399.0
26 TraesCS2A01G080800 chr2B 84.881 377 32 15 847 1210 55887452 55887816 2.810000e-94 357.0
27 TraesCS2A01G080800 chr2B 84.703 353 51 3 6419 6770 55891631 55891981 4.710000e-92 350.0
28 TraesCS2A01G080800 chr5B 92.529 2851 204 6 3180 6022 571986156 571989005 0.000000e+00 4076.0
29 TraesCS2A01G080800 chr5B 91.566 2810 226 8 3242 6046 118440965 118438162 0.000000e+00 3866.0
30 TraesCS2A01G080800 chr5B 88.423 2816 282 30 3379 6182 452681885 452679102 0.000000e+00 3354.0
31 TraesCS2A01G080800 chr5B 94.229 1854 106 1 1226 3079 571984279 571986131 0.000000e+00 2830.0
32 TraesCS2A01G080800 chr5B 93.382 272 14 4 6091 6362 427233341 427233608 4.610000e-107 399.0
33 TraesCS2A01G080800 chr4B 91.939 2878 221 9 3171 6042 655079859 655082731 0.000000e+00 4019.0
34 TraesCS2A01G080800 chr3A 95.750 2494 102 2 3532 6024 108501486 108503976 0.000000e+00 4015.0
35 TraesCS2A01G080800 chr3A 94.982 279 13 1 6089 6366 108504277 108504555 3.510000e-118 436.0
36 TraesCS2A01G080800 chr6A 91.691 2768 223 5 3278 6044 21333997 21336758 0.000000e+00 3831.0
37 TraesCS2A01G080800 chr6A 95.838 1970 66 7 1227 3194 124710969 124709014 0.000000e+00 3169.0
38 TraesCS2A01G080800 chr6A 89.449 1071 72 23 5326 6362 230739744 230738681 0.000000e+00 1314.0
39 TraesCS2A01G080800 chr6A 94.964 278 13 1 6089 6365 124706387 124706110 1.260000e-117 435.0
40 TraesCS2A01G080800 chr6A 99.024 205 2 0 439 643 594911725 594911929 1.300000e-97 368.0
41 TraesCS2A01G080800 chr6A 96.330 218 8 0 439 656 25338262 25338045 7.820000e-95 359.0
42 TraesCS2A01G080800 chr6A 96.313 217 8 0 439 655 599658136 599657920 2.810000e-94 357.0
43 TraesCS2A01G080800 chr6A 96.450 169 5 1 1 169 17890180 17890347 2.250000e-70 278.0
44 TraesCS2A01G080800 chr6A 95.349 172 8 0 1 172 184867828 184867657 2.910000e-69 274.0
45 TraesCS2A01G080800 chr6A 95.808 167 7 0 1 167 529404546 529404712 3.770000e-68 270.0
46 TraesCS2A01G080800 chr4D 88.169 3102 270 53 3309 6362 48067270 48064218 0.000000e+00 3605.0
47 TraesCS2A01G080800 chr6B 95.083 1871 92 0 1226 3096 624403358 624405228 0.000000e+00 2946.0
48 TraesCS2A01G080800 chr2D 93.420 1003 42 9 6372 7372 33875152 33874172 0.000000e+00 1465.0
49 TraesCS2A01G080800 chr2D 86.168 788 79 18 6420 7196 33727151 33727919 0.000000e+00 824.0
50 TraesCS2A01G080800 chr2D 82.789 796 106 19 6403 7186 56530785 56531561 0.000000e+00 682.0
51 TraesCS2A01G080800 chr2D 86.735 392 44 6 6422 6809 33850180 33849793 5.880000e-116 429.0
52 TraesCS2A01G080800 chr2D 87.500 384 22 16 847 1226 33875510 33875149 3.540000e-113 420.0
53 TraesCS2A01G080800 chr2D 87.115 357 41 2 6842 7198 33855511 33855160 4.610000e-107 399.0
54 TraesCS2A01G080800 chr2D 84.877 324 47 2 6443 6765 647814673 647814351 7.930000e-85 326.0
55 TraesCS2A01G080800 chr2D 88.293 205 16 4 950 1146 33726846 33727050 1.060000e-58 239.0
56 TraesCS2A01G080800 chrUn 86.387 382 44 6 6432 6809 12882685 12882308 2.130000e-110 411.0
57 TraesCS2A01G080800 chrUn 86.275 357 45 1 6842 7198 12891430 12891782 1.290000e-102 385.0
58 TraesCS2A01G080800 chrUn 100.000 28 0 0 802 829 285758 285785 1.500000e-02 52.8
59 TraesCS2A01G080800 chr7D 93.091 275 14 5 6089 6362 153006464 153006734 1.660000e-106 398.0
60 TraesCS2A01G080800 chr1A 97.248 218 6 0 439 656 15397637 15397420 3.610000e-98 370.0
61 TraesCS2A01G080800 chr1A 95.858 169 7 0 1 169 65506593 65506761 2.910000e-69 274.0
62 TraesCS2A01G080800 chr1A 95.858 169 7 0 1 169 567143352 567143520 2.910000e-69 274.0
63 TraesCS2A01G080800 chr5A 96.789 218 7 0 439 656 695894710 695894493 1.680000e-96 364.0
64 TraesCS2A01G080800 chr5A 95.930 172 7 0 1 172 2515339 2515168 6.260000e-71 279.0
65 TraesCS2A01G080800 chr5A 96.450 169 5 1 1 169 187608981 187609148 2.250000e-70 278.0
66 TraesCS2A01G080800 chr4A 95.853 217 9 0 439 655 577845467 577845683 1.310000e-92 351.0
67 TraesCS2A01G080800 chr4A 95.930 172 6 1 1 172 536600633 536600463 2.250000e-70 278.0
68 TraesCS2A01G080800 chr7A 95.930 172 6 1 1 172 41086433 41086263 2.250000e-70 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G080800 chr2A 36651270 36659463 8193 False 7320.50 14323 100.00000 1 8194 2 chr2A.!!$F5 8193
1 TraesCS2A01G080800 chr2A 698096668 698099886 3218 False 2532.50 4641 94.93400 3200 6362 2 chr2A.!!$F6 3162
2 TraesCS2A01G080800 chr2A 36718108 36719389 1281 True 905.50 1426 91.40050 847 7372 2 chr2A.!!$R4 6525
3 TraesCS2A01G080800 chr2A 57975585 57976362 777 False 691.00 691 83.10000 6419 7186 1 chr2A.!!$F3 767
4 TraesCS2A01G080800 chr3B 42380191 42384849 4658 True 3949.05 7812 92.80550 1393 6070 2 chr3B.!!$R3 4677
5 TraesCS2A01G080800 chr3B 70902240 70904071 1831 True 2832.00 2832 94.55000 1245 3079 1 chr3B.!!$R1 1834
6 TraesCS2A01G080800 chr5D 538257192 538262295 5103 True 6739.00 6739 90.48000 1222 6367 1 chr5D.!!$R1 5145
7 TraesCS2A01G080800 chr1B 17519683 17524438 4755 True 3768.50 4403 95.02400 1226 6024 2 chr1B.!!$R1 4798
8 TraesCS2A01G080800 chr1B 245929808 245931676 1868 False 2937.00 2937 95.02700 1227 3096 1 chr1B.!!$F1 1869
9 TraesCS2A01G080800 chr2B 141716115 141719173 3058 False 4143.00 4143 91.29700 3333 6362 1 chr2B.!!$F1 3029
10 TraesCS2A01G080800 chr2B 666634078 666639606 5528 False 1650.50 2902 93.87300 1226 6362 2 chr2B.!!$F3 5136
11 TraesCS2A01G080800 chr2B 55887452 55892369 4917 False 859.00 2272 87.33475 847 8194 4 chr2B.!!$F2 7347
12 TraesCS2A01G080800 chr5B 118438162 118440965 2803 True 3866.00 3866 91.56600 3242 6046 1 chr5B.!!$R1 2804
13 TraesCS2A01G080800 chr5B 571984279 571989005 4726 False 3453.00 4076 93.37900 1226 6022 2 chr5B.!!$F2 4796
14 TraesCS2A01G080800 chr5B 452679102 452681885 2783 True 3354.00 3354 88.42300 3379 6182 1 chr5B.!!$R2 2803
15 TraesCS2A01G080800 chr4B 655079859 655082731 2872 False 4019.00 4019 91.93900 3171 6042 1 chr4B.!!$F1 2871
16 TraesCS2A01G080800 chr3A 108501486 108504555 3069 False 2225.50 4015 95.36600 3532 6366 2 chr3A.!!$F1 2834
17 TraesCS2A01G080800 chr6A 21333997 21336758 2761 False 3831.00 3831 91.69100 3278 6044 1 chr6A.!!$F2 2766
18 TraesCS2A01G080800 chr6A 124706110 124710969 4859 True 1802.00 3169 95.40100 1227 6365 2 chr6A.!!$R5 5138
19 TraesCS2A01G080800 chr6A 230738681 230739744 1063 True 1314.00 1314 89.44900 5326 6362 1 chr6A.!!$R3 1036
20 TraesCS2A01G080800 chr4D 48064218 48067270 3052 True 3605.00 3605 88.16900 3309 6362 1 chr4D.!!$R1 3053
21 TraesCS2A01G080800 chr6B 624403358 624405228 1870 False 2946.00 2946 95.08300 1226 3096 1 chr6B.!!$F1 1870
22 TraesCS2A01G080800 chr2D 33874172 33875510 1338 True 942.50 1465 90.46000 847 7372 2 chr2D.!!$R4 6525
23 TraesCS2A01G080800 chr2D 56530785 56531561 776 False 682.00 682 82.78900 6403 7186 1 chr2D.!!$F1 783
24 TraesCS2A01G080800 chr2D 33726846 33727919 1073 False 531.50 824 87.23050 950 7196 2 chr2D.!!$F2 6246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 607 0.031414 AGGGCATTAGTACCGACCCT 60.031 55.000 4.22 4.22 42.97 4.34 F
667 668 0.033601 ACCAGTGAACCTTGGTTGCA 60.034 50.000 10.04 5.36 45.16 4.08 F
758 759 0.034896 GGACGAAGCAAGGGAGTCAA 59.965 55.000 0.00 0.00 33.84 3.18 F
2429 2475 0.111266 CGAGTTGGTGAAGAAACGCG 60.111 55.000 3.53 3.53 41.74 6.01 F
2837 2883 1.152756 AAGCTGCCAAGTCCGGTTT 60.153 52.632 0.00 0.00 0.00 3.27 F
2882 2928 1.528542 CATGGCAGCCATCCAGAGG 60.529 63.158 25.23 8.41 43.15 3.69 F
4018 4104 0.251121 TGGCGGATGGTGTGATTGTT 60.251 50.000 0.00 0.00 0.00 2.83 F
4478 4564 1.229082 AACTGGGTAGAGGTCGCCA 60.229 57.895 0.00 0.00 0.00 5.69 F
5479 5882 1.211212 GTCGCCCACCTTAAACCCTAT 59.789 52.381 0.00 0.00 0.00 2.57 F
6673 7826 0.601046 CTGCGCACTTTGACCTCAGA 60.601 55.000 5.66 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2372 2418 0.179215 CCGATGCTTCGCTGTTTGTC 60.179 55.000 15.99 0.0 44.12 3.18 R
2557 2603 2.354403 GCTTTTCTGCATGGCCATCTTT 60.354 45.455 17.61 0.0 0.00 2.52 R
2915 2961 2.058595 GTCTGCTCCTTCCCCGCTA 61.059 63.158 0.00 0.0 0.00 4.26 R
3303 3373 1.301716 CTCATAATGGGTCGCCGGG 60.302 63.158 2.18 0.0 0.00 5.73 R
3983 4069 1.683011 CGCCATCTTCTTTCCACCCAT 60.683 52.381 0.00 0.0 0.00 4.00 R
4478 4564 1.832608 TCACCGCTGTGACAGTCCT 60.833 57.895 14.82 0.0 46.40 3.85 R
5479 5882 0.171231 CTCCGACGAGCTCAATGACA 59.829 55.000 15.40 0.0 0.00 3.58 R
5911 6320 0.250038 CTACGGGTCCGAGGTCGATA 60.250 60.000 16.90 0.0 43.02 2.92 R
6819 8042 0.036732 ATCACACGAACCATGCCAGT 59.963 50.000 0.00 0.0 0.00 4.00 R
8047 9410 0.236711 GTGTGCATCTGAGTGTGTGC 59.763 55.000 0.00 0.0 38.05 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.673976 GCTAGCTAGCGTGTCTAGTC 57.326 55.000 28.89 0.98 45.22 2.59
38 39 1.264826 GCTAGCTAGCGTGTCTAGTCC 59.735 57.143 28.89 0.45 45.22 3.85
39 40 2.841215 CTAGCTAGCGTGTCTAGTCCT 58.159 52.381 8.05 0.00 45.22 3.85
40 41 1.670791 AGCTAGCGTGTCTAGTCCTC 58.329 55.000 9.55 0.00 45.22 3.71
41 42 1.210967 AGCTAGCGTGTCTAGTCCTCT 59.789 52.381 9.55 0.00 45.22 3.69
42 43 1.600485 GCTAGCGTGTCTAGTCCTCTC 59.400 57.143 0.00 0.00 45.22 3.20
43 44 2.743838 GCTAGCGTGTCTAGTCCTCTCT 60.744 54.545 0.00 0.00 45.22 3.10
44 45 3.493002 GCTAGCGTGTCTAGTCCTCTCTA 60.493 52.174 0.00 0.00 45.22 2.43
45 46 3.849563 AGCGTGTCTAGTCCTCTCTAT 57.150 47.619 0.00 0.00 0.00 1.98
46 47 4.959560 AGCGTGTCTAGTCCTCTCTATA 57.040 45.455 0.00 0.00 0.00 1.31
47 48 4.634199 AGCGTGTCTAGTCCTCTCTATAC 58.366 47.826 0.00 0.00 0.00 1.47
48 49 4.101274 AGCGTGTCTAGTCCTCTCTATACA 59.899 45.833 0.00 0.00 0.00 2.29
49 50 4.998672 GCGTGTCTAGTCCTCTCTATACAT 59.001 45.833 0.00 0.00 32.53 2.29
50 51 6.014413 AGCGTGTCTAGTCCTCTCTATACATA 60.014 42.308 0.00 0.00 32.53 2.29
51 52 6.819649 GCGTGTCTAGTCCTCTCTATACATAT 59.180 42.308 0.00 0.00 32.53 1.78
52 53 7.201574 GCGTGTCTAGTCCTCTCTATACATATG 60.202 44.444 0.00 0.00 32.53 1.78
53 54 7.820386 CGTGTCTAGTCCTCTCTATACATATGT 59.180 40.741 13.93 13.93 32.53 2.29
60 61 9.947433 AGTCCTCTCTATACATATGTACAGTAC 57.053 37.037 17.69 3.49 32.72 2.73
61 62 8.871862 GTCCTCTCTATACATATGTACAGTACG 58.128 40.741 17.69 9.01 32.72 3.67
62 63 8.591940 TCCTCTCTATACATATGTACAGTACGT 58.408 37.037 17.69 10.37 32.72 3.57
63 64 9.866798 CCTCTCTATACATATGTACAGTACGTA 57.133 37.037 17.69 13.94 34.89 3.57
65 66 9.363763 TCTCTATACATATGTACAGTACGTAGC 57.636 37.037 17.69 0.00 33.99 3.58
66 67 8.177980 TCTATACATATGTACAGTACGTAGCG 57.822 38.462 17.69 12.45 33.99 4.26
67 68 3.881795 ACATATGTACAGTACGTAGCGC 58.118 45.455 16.20 0.00 33.99 5.92
68 69 3.562973 ACATATGTACAGTACGTAGCGCT 59.437 43.478 17.26 17.26 33.99 5.92
69 70 2.470196 ATGTACAGTACGTAGCGCTG 57.530 50.000 22.90 6.70 38.28 5.18
70 71 1.441738 TGTACAGTACGTAGCGCTGA 58.558 50.000 22.90 0.61 36.37 4.26
71 72 1.129251 TGTACAGTACGTAGCGCTGAC 59.871 52.381 22.90 13.18 36.37 3.51
72 73 0.729116 TACAGTACGTAGCGCTGACC 59.271 55.000 22.90 6.84 36.37 4.02
73 74 1.239296 ACAGTACGTAGCGCTGACCA 61.239 55.000 22.90 0.00 36.37 4.02
74 75 0.109458 CAGTACGTAGCGCTGACCAA 60.109 55.000 22.90 0.00 35.18 3.67
75 76 0.170561 AGTACGTAGCGCTGACCAAG 59.829 55.000 22.90 4.51 0.00 3.61
88 89 3.930336 CTGACCAAGCACAGACATAAGA 58.070 45.455 0.00 0.00 36.38 2.10
89 90 3.930336 TGACCAAGCACAGACATAAGAG 58.070 45.455 0.00 0.00 0.00 2.85
90 91 3.578282 TGACCAAGCACAGACATAAGAGA 59.422 43.478 0.00 0.00 0.00 3.10
91 92 4.180057 GACCAAGCACAGACATAAGAGAG 58.820 47.826 0.00 0.00 0.00 3.20
92 93 3.055530 ACCAAGCACAGACATAAGAGAGG 60.056 47.826 0.00 0.00 0.00 3.69
93 94 3.196469 CCAAGCACAGACATAAGAGAGGA 59.804 47.826 0.00 0.00 0.00 3.71
94 95 4.180057 CAAGCACAGACATAAGAGAGGAC 58.820 47.826 0.00 0.00 0.00 3.85
95 96 3.435275 AGCACAGACATAAGAGAGGACA 58.565 45.455 0.00 0.00 0.00 4.02
96 97 3.194542 AGCACAGACATAAGAGAGGACAC 59.805 47.826 0.00 0.00 0.00 3.67
97 98 3.194542 GCACAGACATAAGAGAGGACACT 59.805 47.826 0.00 0.00 0.00 3.55
98 99 4.322349 GCACAGACATAAGAGAGGACACTT 60.322 45.833 0.00 0.00 0.00 3.16
99 100 5.406649 CACAGACATAAGAGAGGACACTTC 58.593 45.833 0.00 0.00 0.00 3.01
100 101 5.184864 CACAGACATAAGAGAGGACACTTCT 59.815 44.000 0.00 0.00 0.00 2.85
101 102 5.417580 ACAGACATAAGAGAGGACACTTCTC 59.582 44.000 0.00 0.00 0.00 2.87
102 103 5.652014 CAGACATAAGAGAGGACACTTCTCT 59.348 44.000 7.43 7.43 43.56 3.10
140 141 9.326413 AGCTACCTAACACAATATATGAAACAC 57.674 33.333 0.00 0.00 0.00 3.32
141 142 8.557029 GCTACCTAACACAATATATGAAACACC 58.443 37.037 0.00 0.00 0.00 4.16
142 143 9.832445 CTACCTAACACAATATATGAAACACCT 57.168 33.333 0.00 0.00 0.00 4.00
154 155 7.907841 ATATGAAACACCTAAATTAACCCCC 57.092 36.000 0.00 0.00 0.00 5.40
457 458 2.712057 CCAGCCACAGAAATGTTGAC 57.288 50.000 0.00 0.00 0.00 3.18
458 459 1.069022 CCAGCCACAGAAATGTTGACG 60.069 52.381 0.00 0.00 0.00 4.35
459 460 0.593128 AGCCACAGAAATGTTGACGC 59.407 50.000 0.00 0.00 0.00 5.19
460 461 0.725784 GCCACAGAAATGTTGACGCG 60.726 55.000 3.53 3.53 0.00 6.01
461 462 0.586319 CCACAGAAATGTTGACGCGT 59.414 50.000 13.85 13.85 0.00 6.01
462 463 1.660052 CCACAGAAATGTTGACGCGTG 60.660 52.381 20.70 0.00 0.00 5.34
463 464 1.260297 CACAGAAATGTTGACGCGTGA 59.740 47.619 20.70 4.74 0.00 4.35
464 465 1.937223 ACAGAAATGTTGACGCGTGAA 59.063 42.857 20.70 13.50 0.00 3.18
465 466 2.548057 ACAGAAATGTTGACGCGTGAAT 59.452 40.909 20.70 0.00 0.00 2.57
466 467 2.904319 CAGAAATGTTGACGCGTGAATG 59.096 45.455 20.70 4.50 0.00 2.67
467 468 1.643810 GAAATGTTGACGCGTGAATGC 59.356 47.619 20.70 3.88 0.00 3.56
468 469 0.109781 AATGTTGACGCGTGAATGCC 60.110 50.000 20.70 3.00 0.00 4.40
469 470 0.955428 ATGTTGACGCGTGAATGCCT 60.955 50.000 20.70 0.00 0.00 4.75
470 471 0.319986 TGTTGACGCGTGAATGCCTA 60.320 50.000 20.70 0.00 0.00 3.93
471 472 1.006832 GTTGACGCGTGAATGCCTAT 58.993 50.000 20.70 0.00 0.00 2.57
472 473 1.396996 GTTGACGCGTGAATGCCTATT 59.603 47.619 20.70 0.00 0.00 1.73
473 474 1.006086 TGACGCGTGAATGCCTATTG 58.994 50.000 20.70 0.00 0.00 1.90
474 475 0.304705 GACGCGTGAATGCCTATTGG 59.695 55.000 20.70 0.00 0.00 3.16
475 476 0.392461 ACGCGTGAATGCCTATTGGT 60.392 50.000 12.93 0.00 35.27 3.67
476 477 0.304705 CGCGTGAATGCCTATTGGTC 59.695 55.000 0.00 0.00 35.27 4.02
477 478 0.663153 GCGTGAATGCCTATTGGTCC 59.337 55.000 0.00 0.00 35.27 4.46
478 479 1.308998 CGTGAATGCCTATTGGTCCC 58.691 55.000 0.00 0.00 35.27 4.46
479 480 1.308998 GTGAATGCCTATTGGTCCCG 58.691 55.000 0.00 0.00 35.27 5.14
480 481 0.182537 TGAATGCCTATTGGTCCCGG 59.817 55.000 0.00 0.00 35.27 5.73
481 482 0.182775 GAATGCCTATTGGTCCCGGT 59.817 55.000 0.00 0.00 35.27 5.28
482 483 0.629058 AATGCCTATTGGTCCCGGTT 59.371 50.000 0.00 0.00 35.27 4.44
483 484 0.106719 ATGCCTATTGGTCCCGGTTG 60.107 55.000 0.00 0.00 35.27 3.77
484 485 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
485 486 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
486 487 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
487 488 1.001887 TATTGGTCCCGGTTGGTGC 60.002 57.895 0.00 0.00 34.77 5.01
488 489 2.487274 TATTGGTCCCGGTTGGTGCC 62.487 60.000 0.00 0.00 34.77 5.01
503 504 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
504 505 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
505 506 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
506 507 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
507 508 2.282887 CCAACCGGGACCAAAGGG 60.283 66.667 6.32 0.00 40.01 3.95
517 518 3.500635 CCAAAGGGTCTCCTGCCT 58.499 61.111 0.00 0.00 44.07 4.75
518 519 1.001641 CCAAAGGGTCTCCTGCCTG 60.002 63.158 0.00 0.00 44.07 4.85
519 520 1.001641 CAAAGGGTCTCCTGCCTGG 60.002 63.158 0.00 0.00 44.07 4.45
520 521 2.234296 AAAGGGTCTCCTGCCTGGG 61.234 63.158 0.00 0.00 44.07 4.45
523 524 3.791586 GGTCTCCTGCCTGGGCTC 61.792 72.222 13.05 0.00 42.51 4.70
524 525 3.791586 GTCTCCTGCCTGGGCTCC 61.792 72.222 13.05 0.00 42.51 4.70
551 552 3.402681 CCACGTGGAGGCCCATCT 61.403 66.667 31.31 0.00 45.68 2.90
552 553 2.124983 CACGTGGAGGCCCATCTG 60.125 66.667 7.95 0.00 45.68 2.90
553 554 2.607750 ACGTGGAGGCCCATCTGT 60.608 61.111 0.00 0.00 45.68 3.41
554 555 2.187946 CGTGGAGGCCCATCTGTC 59.812 66.667 0.00 0.00 45.68 3.51
555 556 2.592308 GTGGAGGCCCATCTGTCC 59.408 66.667 0.00 0.00 45.68 4.02
556 557 2.692368 TGGAGGCCCATCTGTCCC 60.692 66.667 0.00 0.00 37.58 4.46
557 558 3.866582 GGAGGCCCATCTGTCCCG 61.867 72.222 0.00 0.00 0.00 5.14
558 559 3.866582 GAGGCCCATCTGTCCCGG 61.867 72.222 0.00 0.00 0.00 5.73
559 560 4.741239 AGGCCCATCTGTCCCGGT 62.741 66.667 0.00 0.00 0.00 5.28
560 561 3.728373 GGCCCATCTGTCCCGGTT 61.728 66.667 0.00 0.00 0.00 4.44
561 562 2.124695 GCCCATCTGTCCCGGTTC 60.125 66.667 0.00 0.00 0.00 3.62
562 563 2.670148 GCCCATCTGTCCCGGTTCT 61.670 63.158 0.00 0.00 0.00 3.01
563 564 1.221840 CCCATCTGTCCCGGTTCTG 59.778 63.158 0.00 0.00 0.00 3.02
564 565 1.221840 CCATCTGTCCCGGTTCTGG 59.778 63.158 0.00 0.00 0.00 3.86
565 566 1.264749 CCATCTGTCCCGGTTCTGGA 61.265 60.000 0.00 0.00 0.00 3.86
566 567 0.833287 CATCTGTCCCGGTTCTGGAT 59.167 55.000 0.00 0.00 33.65 3.41
567 568 1.210478 CATCTGTCCCGGTTCTGGATT 59.790 52.381 0.00 0.00 33.65 3.01
568 569 0.613260 TCTGTCCCGGTTCTGGATTG 59.387 55.000 0.00 0.00 33.65 2.67
569 570 0.613260 CTGTCCCGGTTCTGGATTGA 59.387 55.000 0.00 0.00 33.65 2.57
570 571 1.003118 CTGTCCCGGTTCTGGATTGAA 59.997 52.381 0.00 0.00 33.65 2.69
571 572 1.271163 TGTCCCGGTTCTGGATTGAAC 60.271 52.381 0.00 0.00 43.88 3.18
576 577 3.948735 GTTCTGGATTGAACCGGGA 57.051 52.632 6.32 0.00 40.10 5.14
577 578 1.450025 GTTCTGGATTGAACCGGGAC 58.550 55.000 6.32 0.00 40.10 4.46
578 579 1.003233 GTTCTGGATTGAACCGGGACT 59.997 52.381 6.32 0.00 40.62 3.85
579 580 2.235402 GTTCTGGATTGAACCGGGACTA 59.765 50.000 6.32 0.00 40.62 2.59
580 581 2.542550 TCTGGATTGAACCGGGACTAA 58.457 47.619 6.32 0.00 36.97 2.24
581 582 2.907696 TCTGGATTGAACCGGGACTAAA 59.092 45.455 6.32 0.00 36.97 1.85
582 583 3.055385 TCTGGATTGAACCGGGACTAAAG 60.055 47.826 6.32 0.00 36.97 1.85
583 584 2.026636 TGGATTGAACCGGGACTAAAGG 60.027 50.000 6.32 0.00 0.00 3.11
584 585 2.640184 GATTGAACCGGGACTAAAGGG 58.360 52.381 6.32 0.00 0.00 3.95
585 586 1.732117 TTGAACCGGGACTAAAGGGA 58.268 50.000 6.32 0.00 0.00 4.20
586 587 0.978907 TGAACCGGGACTAAAGGGAC 59.021 55.000 6.32 0.00 0.00 4.46
587 588 0.978907 GAACCGGGACTAAAGGGACA 59.021 55.000 6.32 0.00 0.00 4.02
588 589 0.981943 AACCGGGACTAAAGGGACAG 59.018 55.000 6.32 0.00 0.00 3.51
589 590 0.908180 ACCGGGACTAAAGGGACAGG 60.908 60.000 6.32 0.00 0.00 4.00
590 591 1.623542 CCGGGACTAAAGGGACAGGG 61.624 65.000 0.00 0.00 0.00 4.45
591 592 1.608154 GGGACTAAAGGGACAGGGC 59.392 63.158 0.00 0.00 0.00 5.19
592 593 1.205460 GGGACTAAAGGGACAGGGCA 61.205 60.000 0.00 0.00 0.00 5.36
593 594 0.919710 GGACTAAAGGGACAGGGCAT 59.080 55.000 0.00 0.00 0.00 4.40
594 595 1.285078 GGACTAAAGGGACAGGGCATT 59.715 52.381 0.00 0.00 0.00 3.56
595 596 2.508300 GGACTAAAGGGACAGGGCATTA 59.492 50.000 0.00 0.00 0.00 1.90
596 597 3.433740 GGACTAAAGGGACAGGGCATTAG 60.434 52.174 0.00 0.00 0.00 1.73
597 598 3.190439 ACTAAAGGGACAGGGCATTAGT 58.810 45.455 0.00 0.00 0.00 2.24
598 599 4.368067 ACTAAAGGGACAGGGCATTAGTA 58.632 43.478 0.00 0.00 33.23 1.82
599 600 3.646736 AAAGGGACAGGGCATTAGTAC 57.353 47.619 0.00 0.00 0.00 2.73
600 601 1.508256 AGGGACAGGGCATTAGTACC 58.492 55.000 0.00 0.00 36.47 3.34
601 602 0.106149 GGGACAGGGCATTAGTACCG 59.894 60.000 0.00 0.00 0.00 4.02
602 603 1.117150 GGACAGGGCATTAGTACCGA 58.883 55.000 0.00 0.00 0.00 4.69
603 604 1.202498 GGACAGGGCATTAGTACCGAC 60.202 57.143 0.00 0.00 0.00 4.79
604 605 0.828677 ACAGGGCATTAGTACCGACC 59.171 55.000 0.00 0.00 0.00 4.79
605 606 0.106149 CAGGGCATTAGTACCGACCC 59.894 60.000 0.00 0.00 37.63 4.46
606 607 0.031414 AGGGCATTAGTACCGACCCT 60.031 55.000 4.22 4.22 42.97 4.34
607 608 0.835276 GGGCATTAGTACCGACCCTT 59.165 55.000 0.00 0.00 34.34 3.95
608 609 1.211212 GGGCATTAGTACCGACCCTTT 59.789 52.381 0.00 0.00 34.34 3.11
609 610 2.435437 GGGCATTAGTACCGACCCTTTA 59.565 50.000 0.00 0.00 34.34 1.85
610 611 3.493873 GGGCATTAGTACCGACCCTTTAG 60.494 52.174 0.00 0.00 34.34 1.85
611 612 3.133542 GGCATTAGTACCGACCCTTTAGT 59.866 47.826 0.00 0.00 0.00 2.24
612 613 4.366586 GCATTAGTACCGACCCTTTAGTC 58.633 47.826 0.00 0.00 0.00 2.59
613 614 4.738839 GCATTAGTACCGACCCTTTAGTCC 60.739 50.000 0.00 0.00 32.91 3.85
614 615 1.857965 AGTACCGACCCTTTAGTCCC 58.142 55.000 0.00 0.00 32.91 4.46
615 616 0.457443 GTACCGACCCTTTAGTCCCG 59.543 60.000 0.00 0.00 32.91 5.14
616 617 0.684153 TACCGACCCTTTAGTCCCGG 60.684 60.000 0.00 0.00 42.30 5.73
617 618 1.986210 CCGACCCTTTAGTCCCGGT 60.986 63.158 0.00 0.00 32.91 5.28
618 619 1.547472 CCGACCCTTTAGTCCCGGTT 61.547 60.000 0.00 0.00 32.91 4.44
619 620 1.185315 CGACCCTTTAGTCCCGGTTA 58.815 55.000 0.00 0.00 32.91 2.85
620 621 1.134995 CGACCCTTTAGTCCCGGTTAC 60.135 57.143 0.00 0.00 32.91 2.50
621 622 1.901833 GACCCTTTAGTCCCGGTTACA 59.098 52.381 0.00 0.00 0.00 2.41
622 623 1.904537 ACCCTTTAGTCCCGGTTACAG 59.095 52.381 0.00 0.00 0.00 2.74
623 624 2.181975 CCCTTTAGTCCCGGTTACAGA 58.818 52.381 0.00 0.00 0.00 3.41
624 625 2.568509 CCCTTTAGTCCCGGTTACAGAA 59.431 50.000 0.00 0.00 0.00 3.02
625 626 3.593096 CCTTTAGTCCCGGTTACAGAAC 58.407 50.000 0.00 0.00 34.56 3.01
634 635 2.259266 GGTTACAGAACCGGGACAAA 57.741 50.000 6.32 0.00 45.73 2.83
635 636 2.574450 GGTTACAGAACCGGGACAAAA 58.426 47.619 6.32 0.00 45.73 2.44
636 637 2.551032 GGTTACAGAACCGGGACAAAAG 59.449 50.000 6.32 0.00 45.73 2.27
637 638 2.551032 GTTACAGAACCGGGACAAAAGG 59.449 50.000 6.32 0.00 0.00 3.11
638 639 0.822121 ACAGAACCGGGACAAAAGGC 60.822 55.000 6.32 0.00 0.00 4.35
639 640 1.228459 AGAACCGGGACAAAAGGCC 60.228 57.895 6.32 0.00 0.00 5.19
640 641 2.203582 AACCGGGACAAAAGGCCC 60.204 61.111 6.32 0.00 41.11 5.80
641 642 2.708593 GAACCGGGACAAAAGGCCCT 62.709 60.000 6.32 0.00 42.40 5.19
642 643 2.117423 CCGGGACAAAAGGCCCTT 59.883 61.111 4.64 0.00 42.40 3.95
643 644 1.533033 CCGGGACAAAAGGCCCTTT 60.533 57.895 1.93 1.93 42.40 3.11
644 645 1.118965 CCGGGACAAAAGGCCCTTTT 61.119 55.000 15.78 15.78 43.36 2.27
645 646 0.756294 CGGGACAAAAGGCCCTTTTT 59.244 50.000 18.78 10.47 41.05 1.94
646 647 1.270094 CGGGACAAAAGGCCCTTTTTC 60.270 52.381 18.78 17.30 41.05 2.29
647 648 2.047061 GGGACAAAAGGCCCTTTTTCT 58.953 47.619 18.78 7.14 41.05 2.52
648 649 3.236047 GGGACAAAAGGCCCTTTTTCTA 58.764 45.455 18.78 0.00 41.05 2.10
649 650 3.006537 GGGACAAAAGGCCCTTTTTCTAC 59.993 47.826 18.78 7.77 41.05 2.59
650 651 3.006537 GGACAAAAGGCCCTTTTTCTACC 59.993 47.826 18.78 14.52 41.05 3.18
651 652 3.639561 GACAAAAGGCCCTTTTTCTACCA 59.360 43.478 18.78 0.00 41.05 3.25
652 653 3.641436 ACAAAAGGCCCTTTTTCTACCAG 59.359 43.478 18.78 8.48 41.05 4.00
653 654 3.612795 AAAGGCCCTTTTTCTACCAGT 57.387 42.857 1.93 0.00 28.27 4.00
654 655 2.586648 AGGCCCTTTTTCTACCAGTG 57.413 50.000 0.00 0.00 0.00 3.66
655 656 2.062636 AGGCCCTTTTTCTACCAGTGA 58.937 47.619 0.00 0.00 0.00 3.41
656 657 2.445525 AGGCCCTTTTTCTACCAGTGAA 59.554 45.455 0.00 0.00 0.00 3.18
657 658 2.557056 GGCCCTTTTTCTACCAGTGAAC 59.443 50.000 0.00 0.00 0.00 3.18
658 659 2.557056 GCCCTTTTTCTACCAGTGAACC 59.443 50.000 0.00 0.00 0.00 3.62
659 660 3.750922 GCCCTTTTTCTACCAGTGAACCT 60.751 47.826 0.00 0.00 0.00 3.50
660 661 4.470602 CCCTTTTTCTACCAGTGAACCTT 58.529 43.478 0.00 0.00 0.00 3.50
661 662 4.278419 CCCTTTTTCTACCAGTGAACCTTG 59.722 45.833 0.00 0.00 0.00 3.61
662 663 4.278419 CCTTTTTCTACCAGTGAACCTTGG 59.722 45.833 0.00 0.00 40.38 3.61
664 665 4.513406 TTTCTACCAGTGAACCTTGGTT 57.487 40.909 4.52 4.52 45.16 3.67
665 666 3.485463 TCTACCAGTGAACCTTGGTTG 57.515 47.619 10.04 0.32 45.16 3.77
666 667 1.880027 CTACCAGTGAACCTTGGTTGC 59.120 52.381 10.04 3.04 45.16 4.17
667 668 0.033601 ACCAGTGAACCTTGGTTGCA 60.034 50.000 10.04 5.36 45.16 4.08
668 669 0.670162 CCAGTGAACCTTGGTTGCAG 59.330 55.000 10.04 0.38 0.00 4.41
669 670 0.670162 CAGTGAACCTTGGTTGCAGG 59.330 55.000 10.04 0.00 37.45 4.85
670 671 0.468029 AGTGAACCTTGGTTGCAGGG 60.468 55.000 10.04 0.00 35.46 4.45
671 672 1.832167 TGAACCTTGGTTGCAGGGC 60.832 57.895 10.04 0.00 35.46 5.19
672 673 1.832167 GAACCTTGGTTGCAGGGCA 60.832 57.895 10.04 0.00 35.46 5.36
673 674 1.382420 AACCTTGGTTGCAGGGCAA 60.382 52.632 4.00 0.00 46.80 4.52
698 699 3.527186 GCGTCGGATGTCGCTATG 58.473 61.111 4.47 0.00 46.69 2.23
699 700 2.016704 GCGTCGGATGTCGCTATGG 61.017 63.158 4.47 0.00 46.69 2.74
700 701 1.652563 CGTCGGATGTCGCTATGGA 59.347 57.895 0.00 0.00 39.05 3.41
701 702 0.660595 CGTCGGATGTCGCTATGGAC 60.661 60.000 0.00 0.00 39.05 4.02
702 703 0.318784 GTCGGATGTCGCTATGGACC 60.319 60.000 0.00 0.00 39.05 4.46
703 704 1.371758 CGGATGTCGCTATGGACCG 60.372 63.158 0.00 0.00 36.07 4.79
704 705 1.740285 GGATGTCGCTATGGACCGT 59.260 57.895 0.00 0.00 36.07 4.83
705 706 0.104304 GGATGTCGCTATGGACCGTT 59.896 55.000 0.00 0.00 36.07 4.44
706 707 1.209128 GATGTCGCTATGGACCGTTG 58.791 55.000 0.00 0.00 36.07 4.10
707 708 0.810031 ATGTCGCTATGGACCGTTGC 60.810 55.000 9.81 9.81 36.07 4.17
708 709 1.447140 GTCGCTATGGACCGTTGCA 60.447 57.895 18.38 4.93 0.00 4.08
709 710 1.017177 GTCGCTATGGACCGTTGCAA 61.017 55.000 18.38 0.00 0.00 4.08
710 711 0.107897 TCGCTATGGACCGTTGCAAT 60.108 50.000 18.38 0.00 0.00 3.56
711 712 0.732571 CGCTATGGACCGTTGCAATT 59.267 50.000 18.38 0.00 0.00 2.32
712 713 1.132262 CGCTATGGACCGTTGCAATTT 59.868 47.619 18.38 0.00 0.00 1.82
713 714 2.415357 CGCTATGGACCGTTGCAATTTT 60.415 45.455 18.38 0.00 0.00 1.82
714 715 2.923020 GCTATGGACCGTTGCAATTTTG 59.077 45.455 14.35 0.00 0.00 2.44
715 716 3.366883 GCTATGGACCGTTGCAATTTTGA 60.367 43.478 14.35 0.00 0.00 2.69
716 717 3.959535 ATGGACCGTTGCAATTTTGAT 57.040 38.095 0.59 0.00 0.00 2.57
717 718 3.296322 TGGACCGTTGCAATTTTGATC 57.704 42.857 0.59 0.00 0.00 2.92
718 719 2.250188 GGACCGTTGCAATTTTGATCG 58.750 47.619 0.59 0.00 0.00 3.69
719 720 2.095466 GGACCGTTGCAATTTTGATCGA 60.095 45.455 0.59 0.00 0.00 3.59
720 721 3.560503 GACCGTTGCAATTTTGATCGAA 58.439 40.909 0.59 0.00 0.00 3.71
721 722 3.564511 ACCGTTGCAATTTTGATCGAAG 58.435 40.909 0.59 0.00 0.00 3.79
722 723 2.916716 CCGTTGCAATTTTGATCGAAGG 59.083 45.455 0.59 0.00 0.00 3.46
723 724 2.916716 CGTTGCAATTTTGATCGAAGGG 59.083 45.455 0.59 0.00 0.00 3.95
724 725 3.253230 GTTGCAATTTTGATCGAAGGGG 58.747 45.455 0.59 0.00 0.00 4.79
725 726 2.801483 TGCAATTTTGATCGAAGGGGA 58.199 42.857 0.00 0.00 0.00 4.81
726 727 3.161067 TGCAATTTTGATCGAAGGGGAA 58.839 40.909 0.00 0.00 0.00 3.97
727 728 3.056891 TGCAATTTTGATCGAAGGGGAAC 60.057 43.478 0.00 0.00 0.00 3.62
728 729 3.056891 GCAATTTTGATCGAAGGGGAACA 60.057 43.478 0.00 0.00 0.00 3.18
729 730 4.560513 GCAATTTTGATCGAAGGGGAACAA 60.561 41.667 0.00 0.00 0.00 2.83
730 731 5.723295 CAATTTTGATCGAAGGGGAACAAT 58.277 37.500 0.00 0.00 30.30 2.71
731 732 5.582689 ATTTTGATCGAAGGGGAACAATC 57.417 39.130 0.00 0.00 30.30 2.67
732 733 3.712016 TTGATCGAAGGGGAACAATCA 57.288 42.857 0.00 0.00 0.00 2.57
733 734 3.266510 TGATCGAAGGGGAACAATCAG 57.733 47.619 0.00 0.00 0.00 2.90
734 735 2.092968 TGATCGAAGGGGAACAATCAGG 60.093 50.000 0.00 0.00 0.00 3.86
735 736 1.651737 TCGAAGGGGAACAATCAGGA 58.348 50.000 0.00 0.00 0.00 3.86
736 737 1.555075 TCGAAGGGGAACAATCAGGAG 59.445 52.381 0.00 0.00 0.00 3.69
737 738 1.407437 CGAAGGGGAACAATCAGGAGG 60.407 57.143 0.00 0.00 0.00 4.30
738 739 1.916181 GAAGGGGAACAATCAGGAGGA 59.084 52.381 0.00 0.00 0.00 3.71
739 740 1.589414 AGGGGAACAATCAGGAGGAG 58.411 55.000 0.00 0.00 0.00 3.69
740 741 0.548510 GGGGAACAATCAGGAGGAGG 59.451 60.000 0.00 0.00 0.00 4.30
741 742 1.584724 GGGAACAATCAGGAGGAGGA 58.415 55.000 0.00 0.00 0.00 3.71
742 743 1.210722 GGGAACAATCAGGAGGAGGAC 59.789 57.143 0.00 0.00 0.00 3.85
743 744 1.134670 GGAACAATCAGGAGGAGGACG 60.135 57.143 0.00 0.00 0.00 4.79
744 745 1.825474 GAACAATCAGGAGGAGGACGA 59.175 52.381 0.00 0.00 0.00 4.20
745 746 1.938585 ACAATCAGGAGGAGGACGAA 58.061 50.000 0.00 0.00 0.00 3.85
746 747 1.827969 ACAATCAGGAGGAGGACGAAG 59.172 52.381 0.00 0.00 0.00 3.79
747 748 0.827368 AATCAGGAGGAGGACGAAGC 59.173 55.000 0.00 0.00 0.00 3.86
748 749 0.324738 ATCAGGAGGAGGACGAAGCA 60.325 55.000 0.00 0.00 0.00 3.91
749 750 0.541998 TCAGGAGGAGGACGAAGCAA 60.542 55.000 0.00 0.00 0.00 3.91
750 751 0.108424 CAGGAGGAGGACGAAGCAAG 60.108 60.000 0.00 0.00 0.00 4.01
751 752 1.219393 GGAGGAGGACGAAGCAAGG 59.781 63.158 0.00 0.00 0.00 3.61
752 753 1.219393 GAGGAGGACGAAGCAAGGG 59.781 63.158 0.00 0.00 0.00 3.95
753 754 1.229209 AGGAGGACGAAGCAAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
754 755 1.219393 GGAGGACGAAGCAAGGGAG 59.781 63.158 0.00 0.00 0.00 4.30
755 756 1.545706 GGAGGACGAAGCAAGGGAGT 61.546 60.000 0.00 0.00 0.00 3.85
756 757 0.108567 GAGGACGAAGCAAGGGAGTC 60.109 60.000 0.00 0.00 0.00 3.36
757 758 0.832135 AGGACGAAGCAAGGGAGTCA 60.832 55.000 0.00 0.00 33.84 3.41
758 759 0.034896 GGACGAAGCAAGGGAGTCAA 59.965 55.000 0.00 0.00 33.84 3.18
759 760 1.542547 GGACGAAGCAAGGGAGTCAAA 60.543 52.381 0.00 0.00 33.84 2.69
760 761 2.427506 GACGAAGCAAGGGAGTCAAAT 58.572 47.619 0.00 0.00 32.57 2.32
761 762 2.416893 GACGAAGCAAGGGAGTCAAATC 59.583 50.000 0.00 0.00 32.57 2.17
762 763 2.039084 ACGAAGCAAGGGAGTCAAATCT 59.961 45.455 0.00 0.00 0.00 2.40
763 764 2.417933 CGAAGCAAGGGAGTCAAATCTG 59.582 50.000 0.00 0.00 0.00 2.90
764 765 3.679389 GAAGCAAGGGAGTCAAATCTGA 58.321 45.455 0.00 0.00 0.00 3.27
777 778 6.517914 GTCAAATCTGACGGCTCTTAATAG 57.482 41.667 0.00 0.00 42.54 1.73
778 779 5.050490 TCAAATCTGACGGCTCTTAATAGC 58.950 41.667 4.31 4.31 41.99 2.97
779 780 2.776312 TCTGACGGCTCTTAATAGCG 57.224 50.000 6.75 5.28 43.74 4.26
780 781 1.337071 TCTGACGGCTCTTAATAGCGG 59.663 52.381 15.87 15.87 43.74 5.52
785 786 2.516923 CGGCTCTTAATAGCGGTATCG 58.483 52.381 7.72 1.53 43.74 2.92
786 787 2.161012 CGGCTCTTAATAGCGGTATCGA 59.839 50.000 7.72 4.60 43.74 3.59
787 788 3.728268 CGGCTCTTAATAGCGGTATCGAG 60.728 52.174 7.72 13.95 43.74 4.04
788 789 3.172824 GCTCTTAATAGCGGTATCGAGC 58.827 50.000 24.52 24.52 39.00 5.03
790 791 2.161012 TCTTAATAGCGGTATCGAGCGG 59.839 50.000 7.72 0.00 46.62 5.52
791 792 0.169672 TAATAGCGGTATCGAGCGGC 59.830 55.000 7.72 12.29 46.62 6.53
792 793 1.524863 AATAGCGGTATCGAGCGGCT 61.525 55.000 21.76 21.76 46.62 5.52
793 794 2.201436 ATAGCGGTATCGAGCGGCTG 62.201 60.000 24.65 0.00 46.62 4.85
795 796 4.647615 CGGTATCGAGCGGCTGGG 62.648 72.222 7.50 0.00 42.86 4.45
796 797 4.301027 GGTATCGAGCGGCTGGGG 62.301 72.222 7.50 0.00 0.00 4.96
797 798 4.971125 GTATCGAGCGGCTGGGGC 62.971 72.222 7.50 0.00 37.82 5.80
876 881 4.881019 TGAAGAGAAAACTCTCCTCCAG 57.119 45.455 0.00 0.00 37.46 3.86
900 905 0.233074 CATGTAATCAGCGCGCGATT 59.767 50.000 34.99 34.99 36.97 3.34
907 912 4.135153 AGCGCGCGATTCCTCTGT 62.135 61.111 37.18 0.00 0.00 3.41
908 913 2.278596 GCGCGCGATTCCTCTGTA 60.279 61.111 37.18 0.00 0.00 2.74
919 925 3.510388 TTCCTCTGTATGTCTTCTGCG 57.490 47.619 0.00 0.00 0.00 5.18
920 926 1.751351 TCCTCTGTATGTCTTCTGCGG 59.249 52.381 0.00 0.00 0.00 5.69
921 927 1.478510 CCTCTGTATGTCTTCTGCGGT 59.521 52.381 0.00 0.00 0.00 5.68
923 929 3.182967 CTCTGTATGTCTTCTGCGGTTC 58.817 50.000 0.00 0.00 0.00 3.62
924 930 2.826128 TCTGTATGTCTTCTGCGGTTCT 59.174 45.455 0.00 0.00 0.00 3.01
925 931 2.926200 CTGTATGTCTTCTGCGGTTCTG 59.074 50.000 0.00 0.00 0.00 3.02
926 932 1.661112 GTATGTCTTCTGCGGTTCTGC 59.339 52.381 0.00 0.00 0.00 4.26
927 933 0.674895 ATGTCTTCTGCGGTTCTGCC 60.675 55.000 1.01 0.00 0.00 4.85
928 934 1.004440 GTCTTCTGCGGTTCTGCCT 60.004 57.895 1.01 0.00 34.25 4.75
929 935 0.246635 GTCTTCTGCGGTTCTGCCTA 59.753 55.000 1.01 0.00 34.25 3.93
930 936 1.134670 GTCTTCTGCGGTTCTGCCTAT 60.135 52.381 1.01 0.00 34.25 2.57
931 937 2.100916 GTCTTCTGCGGTTCTGCCTATA 59.899 50.000 1.01 0.00 34.25 1.31
942 948 5.995282 CGGTTCTGCCTATAAAATACATGGA 59.005 40.000 0.00 0.00 34.25 3.41
990 996 5.152097 ACGCGGAGTAATCGTATATTCTTG 58.848 41.667 12.47 0.00 34.41 3.02
991 997 5.152097 CGCGGAGTAATCGTATATTCTTGT 58.848 41.667 0.00 0.00 0.00 3.16
1032 1046 1.615107 CCTTCGTCGCTTTCGTGACC 61.615 60.000 0.99 0.00 45.57 4.02
1147 1161 3.366070 CGGCTCTGACGGTAGGTATATTG 60.366 52.174 0.00 0.00 0.00 1.90
1150 1164 4.763793 GCTCTGACGGTAGGTATATTGGTA 59.236 45.833 0.00 0.00 0.00 3.25
1190 1215 0.254178 ATGGACATGCAGACCTCCAC 59.746 55.000 2.80 0.00 35.61 4.02
1192 1217 1.293498 GACATGCAGACCTCCACGT 59.707 57.895 0.00 0.00 0.00 4.49
1496 1541 2.580601 GGAGGTGGGTACGTGCAGT 61.581 63.158 5.86 0.00 33.84 4.40
1668 1713 1.824230 AGAGCTCGTGAAGAAGCTGAT 59.176 47.619 8.37 0.00 34.87 2.90
1912 1957 2.185867 GTCCATAGCACCGCGGAA 59.814 61.111 35.90 14.61 0.00 4.30
2004 2049 1.812686 AACCGCGTACTGAAGCTCCA 61.813 55.000 4.92 0.00 0.00 3.86
2207 2253 0.966920 AGAAACCATCAGGACGACGT 59.033 50.000 0.00 0.00 38.69 4.34
2221 2267 0.313043 CGACGTACCACCTCAACACT 59.687 55.000 0.00 0.00 0.00 3.55
2372 2418 0.177836 TGTCGGTGCCATGGTGATAG 59.822 55.000 14.67 1.86 0.00 2.08
2429 2475 0.111266 CGAGTTGGTGAAGAAACGCG 60.111 55.000 3.53 3.53 41.74 6.01
2557 2603 3.774766 TGCTGATAGAAAACCTGCTCCTA 59.225 43.478 0.00 0.00 0.00 2.94
2837 2883 1.152756 AAGCTGCCAAGTCCGGTTT 60.153 52.632 0.00 0.00 0.00 3.27
2882 2928 1.528542 CATGGCAGCCATCCAGAGG 60.529 63.158 25.23 8.41 43.15 3.69
2941 2987 1.587933 GAAGGAGCAGACGTCGAGGT 61.588 60.000 11.12 11.12 0.00 3.85
2981 3027 3.085119 ATAACGGGAACTCGGGCGG 62.085 63.158 0.00 0.00 0.00 6.13
3430 3516 4.467084 GAAGGGTGCCGCGGATGA 62.467 66.667 33.48 8.91 0.00 2.92
3530 3616 3.541713 GCCGCGGGAGGAGAAGAT 61.542 66.667 29.38 0.00 0.00 2.40
3566 3652 3.070015 CCTGAGCAAAGGGAAACACAAAT 59.930 43.478 0.00 0.00 33.28 2.32
3983 4069 1.003839 GAGATGGAACACGGTGCCA 60.004 57.895 8.30 8.98 46.51 4.92
4018 4104 0.251121 TGGCGGATGGTGTGATTGTT 60.251 50.000 0.00 0.00 0.00 2.83
4478 4564 1.229082 AACTGGGTAGAGGTCGCCA 60.229 57.895 0.00 0.00 0.00 5.69
4518 4604 2.650813 AATCATCCTGGTCCGAGCGC 62.651 60.000 0.00 0.00 0.00 5.92
4550 4636 6.751888 CAGAAAAACCAACTTCGTCAAATTCT 59.248 34.615 0.00 0.00 0.00 2.40
4643 4729 8.428063 ACAATGACATTATTAAGAGAGAGAGGG 58.572 37.037 0.00 0.00 0.00 4.30
4827 4913 3.000819 CACCACCGGAGTAGGGCA 61.001 66.667 9.46 0.00 35.02 5.36
4874 4960 2.841516 GGGTCGTAGTAGGGGGCC 60.842 72.222 0.00 0.00 0.00 5.80
5072 5381 2.534396 CCAGGGGTTGTAGCCACCA 61.534 63.158 0.00 0.00 37.54 4.17
5330 5733 2.401766 GGTGCGGAGGTGCTTCATG 61.402 63.158 0.00 0.00 35.36 3.07
5477 5880 1.377612 GTCGCCCACCTTAAACCCT 59.622 57.895 0.00 0.00 0.00 4.34
5479 5882 1.211212 GTCGCCCACCTTAAACCCTAT 59.789 52.381 0.00 0.00 0.00 2.57
5966 6375 4.069232 CTGGGAGCGACGCTGGAA 62.069 66.667 29.85 10.87 39.88 3.53
6009 6421 2.657352 ATGGCAGAGGGAGGGGGTA 61.657 63.158 0.00 0.00 0.00 3.69
6033 6446 2.498941 GCGAGATGGGATCGGTGGA 61.499 63.158 0.00 0.00 40.50 4.02
6092 7153 3.180282 CTTGGGAAGGCAAGGGGA 58.820 61.111 0.00 0.00 0.00 4.81
6673 7826 0.601046 CTGCGCACTTTGACCTCAGA 60.601 55.000 5.66 0.00 0.00 3.27
6819 8042 1.745115 GTGCTCCGCCTACATGCAA 60.745 57.895 0.00 0.00 35.34 4.08
6820 8043 1.745115 TGCTCCGCCTACATGCAAC 60.745 57.895 0.00 0.00 0.00 4.17
6821 8044 1.450312 GCTCCGCCTACATGCAACT 60.450 57.895 0.00 0.00 0.00 3.16
6823 8046 1.078497 TCCGCCTACATGCAACTGG 60.078 57.895 0.00 0.00 0.00 4.00
6824 8047 2.764314 CCGCCTACATGCAACTGGC 61.764 63.158 11.69 11.69 45.13 4.85
7034 8376 4.819761 GCGCCGATGCAGGAGTCA 62.820 66.667 0.00 0.00 37.32 3.41
7135 8477 2.859273 AAGCTCGTCGCCAGGAATGG 62.859 60.000 0.00 0.00 40.39 3.16
7198 8540 5.163854 CCATCGTAAACTTCCAGTGATTGAC 60.164 44.000 0.00 0.00 0.00 3.18
7326 8668 6.256686 TCATGCTTTGAAAAATTGCAAACAC 58.743 32.000 1.71 0.00 37.20 3.32
7398 8740 7.004555 AGGATACGATGGATATTGCTAAACA 57.995 36.000 0.00 0.00 46.39 2.83
7404 8746 6.597672 ACGATGGATATTGCTAAACACTCAAA 59.402 34.615 0.00 0.00 0.00 2.69
7474 8816 8.722480 TGTTGAATATCATGACTCCTACAAAG 57.278 34.615 0.00 0.00 0.00 2.77
7481 8823 9.965902 ATATCATGACTCCTACAAAGAAAAACT 57.034 29.630 0.00 0.00 0.00 2.66
7482 8824 7.730364 TCATGACTCCTACAAAGAAAAACTC 57.270 36.000 0.00 0.00 0.00 3.01
7483 8825 7.279615 TCATGACTCCTACAAAGAAAAACTCA 58.720 34.615 0.00 0.00 0.00 3.41
7484 8826 6.920569 TGACTCCTACAAAGAAAAACTCAC 57.079 37.500 0.00 0.00 0.00 3.51
7485 8827 6.650120 TGACTCCTACAAAGAAAAACTCACT 58.350 36.000 0.00 0.00 0.00 3.41
7514 8859 3.502123 AGGATTTCAAGAACGGTCCAA 57.498 42.857 0.00 0.00 0.00 3.53
7547 8892 6.940867 ACACTGAAAAATAAGGGACCTTCTAC 59.059 38.462 6.92 0.00 37.47 2.59
7558 8903 4.001652 GGGACCTTCTACTTGTAAGTTGC 58.998 47.826 2.20 0.00 40.37 4.17
7574 8919 8.455598 TGTAAGTTGCGAATTTTTATTTAGGC 57.544 30.769 0.00 0.00 0.00 3.93
7639 8991 5.676532 TGTTACGGTTGTGTTCCAATTAG 57.323 39.130 0.00 0.00 35.02 1.73
7643 8995 7.013464 TGTTACGGTTGTGTTCCAATTAGAATT 59.987 33.333 0.00 0.00 35.02 2.17
7644 8996 8.505625 GTTACGGTTGTGTTCCAATTAGAATTA 58.494 33.333 0.00 0.00 35.02 1.40
7646 8998 7.942990 ACGGTTGTGTTCCAATTAGAATTAAA 58.057 30.769 0.00 0.00 35.02 1.52
7647 8999 8.414778 ACGGTTGTGTTCCAATTAGAATTAAAA 58.585 29.630 0.00 0.00 35.02 1.52
7648 9000 9.418045 CGGTTGTGTTCCAATTAGAATTAAAAT 57.582 29.630 0.00 0.00 35.02 1.82
7696 9048 5.934625 GGTATCCATGAGTAATACAAGCTGG 59.065 44.000 0.00 0.00 0.00 4.85
7822 9174 5.423931 GGGCATTGGATTACCCTAAAAGAAA 59.576 40.000 0.00 0.00 39.42 2.52
7823 9175 6.406961 GGGCATTGGATTACCCTAAAAGAAAG 60.407 42.308 0.00 0.00 39.42 2.62
7826 9178 8.311109 GCATTGGATTACCCTAAAAGAAAGAAA 58.689 33.333 0.00 0.00 35.38 2.52
7827 9179 9.639601 CATTGGATTACCCTAAAAGAAAGAAAC 57.360 33.333 0.00 0.00 35.38 2.78
7828 9180 9.601810 ATTGGATTACCCTAAAAGAAAGAAACT 57.398 29.630 0.00 0.00 35.38 2.66
7870 9225 8.836268 ATTGATGATAAAAACTGCACACAAAT 57.164 26.923 0.00 0.00 0.00 2.32
7872 9227 8.296799 TGATGATAAAAACTGCACACAAATTC 57.703 30.769 0.00 0.00 0.00 2.17
7887 9242 5.163426 ACACAAATTCCAGAGAAATTGCACA 60.163 36.000 4.02 0.00 43.73 4.57
7888 9243 5.404366 CACAAATTCCAGAGAAATTGCACAG 59.596 40.000 4.02 0.00 43.73 3.66
7892 9247 3.819368 TCCAGAGAAATTGCACAGTTCA 58.181 40.909 10.24 0.00 0.00 3.18
8055 9418 3.563088 CGCACACACGCACACACT 61.563 61.111 0.00 0.00 0.00 3.55
8069 9432 2.355444 CACACACTCAGATGCACACAAA 59.645 45.455 0.00 0.00 0.00 2.83
8078 9441 1.781025 ATGCACACAAACACGTCCCG 61.781 55.000 0.00 0.00 0.00 5.14
8097 9460 3.181459 CCCGGTGAACATATCCACACATA 60.181 47.826 0.00 0.00 35.13 2.29
8106 9469 7.288621 TGAACATATCCACACATAGAGAGACAT 59.711 37.037 0.00 0.00 0.00 3.06
8118 9481 4.750021 AGAGAGACATACATGCACACAT 57.250 40.909 0.00 0.00 36.79 3.21
8136 9499 0.875908 ATGCACATACACTAGCGCCG 60.876 55.000 2.29 0.00 0.00 6.46
8140 9503 2.106332 ATACACTAGCGCCGCACC 59.894 61.111 13.36 0.00 0.00 5.01
8141 9504 2.717044 ATACACTAGCGCCGCACCA 61.717 57.895 13.36 0.00 0.00 4.17
8143 9506 2.233605 TACACTAGCGCCGCACCAAT 62.234 55.000 13.36 0.00 0.00 3.16
8148 9511 2.947118 TAGCGCCGCACCAATACGAG 62.947 60.000 13.36 0.00 0.00 4.18
8149 9512 3.925238 CGCCGCACCAATACGAGC 61.925 66.667 0.00 0.00 0.00 5.03
8152 9515 2.695055 CGCACCAATACGAGCACG 59.305 61.111 0.76 0.76 45.75 5.34
8188 9553 7.391554 ACATAATGCACAGAGACAAACACTTAT 59.608 33.333 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.249700 CTAGACACGCTAGCTAGCTAGTAAGC 62.250 50.000 39.05 30.98 46.85 3.09
11 12 3.810941 AGACACGCTAGCTAGCTAGTAAG 59.189 47.826 39.05 32.50 46.85 2.34
12 13 3.806380 AGACACGCTAGCTAGCTAGTAA 58.194 45.455 39.05 17.42 46.85 2.24
13 14 3.472283 AGACACGCTAGCTAGCTAGTA 57.528 47.619 39.05 17.76 46.85 1.82
14 15 2.335316 AGACACGCTAGCTAGCTAGT 57.665 50.000 39.05 32.17 46.85 2.57
24 25 4.959560 ATAGAGAGGACTAGACACGCTA 57.040 45.455 0.00 1.02 0.00 4.26
25 26 3.849563 ATAGAGAGGACTAGACACGCT 57.150 47.619 0.00 0.00 0.00 5.07
26 27 4.378774 TGTATAGAGAGGACTAGACACGC 58.621 47.826 0.00 0.00 38.89 5.34
27 28 7.820386 ACATATGTATAGAGAGGACTAGACACG 59.180 40.741 6.56 0.00 43.82 4.49
34 35 9.947433 GTACTGTACATATGTATAGAGAGGACT 57.053 37.037 33.65 18.61 40.72 3.85
35 36 8.871862 CGTACTGTACATATGTATAGAGAGGAC 58.128 40.741 33.65 20.58 40.72 3.85
36 37 8.591940 ACGTACTGTACATATGTATAGAGAGGA 58.408 37.037 33.65 12.62 40.72 3.71
37 38 8.774890 ACGTACTGTACATATGTATAGAGAGG 57.225 38.462 33.65 27.00 40.72 3.69
39 40 9.363763 GCTACGTACTGTACATATGTATAGAGA 57.636 37.037 33.65 22.42 40.72 3.10
40 41 8.319585 CGCTACGTACTGTACATATGTATAGAG 58.680 40.741 33.65 26.31 40.72 2.43
41 42 7.201470 GCGCTACGTACTGTACATATGTATAGA 60.201 40.741 33.65 20.18 40.72 1.98
42 43 6.898716 GCGCTACGTACTGTACATATGTATAG 59.101 42.308 28.36 28.36 42.92 1.31
43 44 6.591448 AGCGCTACGTACTGTACATATGTATA 59.409 38.462 18.27 14.62 32.54 1.47
44 45 5.410746 AGCGCTACGTACTGTACATATGTAT 59.589 40.000 18.27 5.84 32.54 2.29
45 46 4.751600 AGCGCTACGTACTGTACATATGTA 59.248 41.667 8.99 11.62 0.00 2.29
46 47 3.562973 AGCGCTACGTACTGTACATATGT 59.437 43.478 8.99 13.93 0.00 2.29
47 48 3.906601 CAGCGCTACGTACTGTACATATG 59.093 47.826 10.99 0.00 0.00 1.78
48 49 3.811497 TCAGCGCTACGTACTGTACATAT 59.189 43.478 10.99 5.39 33.12 1.78
49 50 3.001634 GTCAGCGCTACGTACTGTACATA 59.998 47.826 10.99 6.20 33.12 2.29
50 51 2.011947 TCAGCGCTACGTACTGTACAT 58.988 47.619 10.99 5.26 33.12 2.29
51 52 1.129251 GTCAGCGCTACGTACTGTACA 59.871 52.381 10.99 0.00 33.12 2.90
52 53 1.530646 GGTCAGCGCTACGTACTGTAC 60.531 57.143 10.99 7.90 33.12 2.90
53 54 0.729116 GGTCAGCGCTACGTACTGTA 59.271 55.000 10.99 0.00 33.12 2.74
54 55 1.239296 TGGTCAGCGCTACGTACTGT 61.239 55.000 10.99 0.00 33.12 3.55
55 56 0.109458 TTGGTCAGCGCTACGTACTG 60.109 55.000 10.99 5.54 0.00 2.74
56 57 0.170561 CTTGGTCAGCGCTACGTACT 59.829 55.000 10.99 0.00 0.00 2.73
57 58 1.411493 GCTTGGTCAGCGCTACGTAC 61.411 60.000 10.99 6.19 39.29 3.67
58 59 1.153901 GCTTGGTCAGCGCTACGTA 60.154 57.895 10.99 0.00 39.29 3.57
59 60 2.432628 GCTTGGTCAGCGCTACGT 60.433 61.111 10.99 0.00 39.29 3.57
67 68 3.930336 TCTTATGTCTGTGCTTGGTCAG 58.070 45.455 0.00 0.00 0.00 3.51
68 69 3.578282 TCTCTTATGTCTGTGCTTGGTCA 59.422 43.478 0.00 0.00 0.00 4.02
69 70 4.180057 CTCTCTTATGTCTGTGCTTGGTC 58.820 47.826 0.00 0.00 0.00 4.02
70 71 3.055530 CCTCTCTTATGTCTGTGCTTGGT 60.056 47.826 0.00 0.00 0.00 3.67
71 72 3.196469 TCCTCTCTTATGTCTGTGCTTGG 59.804 47.826 0.00 0.00 0.00 3.61
72 73 4.180057 GTCCTCTCTTATGTCTGTGCTTG 58.820 47.826 0.00 0.00 0.00 4.01
73 74 3.834813 TGTCCTCTCTTATGTCTGTGCTT 59.165 43.478 0.00 0.00 0.00 3.91
74 75 3.194542 GTGTCCTCTCTTATGTCTGTGCT 59.805 47.826 0.00 0.00 0.00 4.40
75 76 3.194542 AGTGTCCTCTCTTATGTCTGTGC 59.805 47.826 0.00 0.00 0.00 4.57
76 77 5.184864 AGAAGTGTCCTCTCTTATGTCTGTG 59.815 44.000 0.00 0.00 0.00 3.66
77 78 5.329399 AGAAGTGTCCTCTCTTATGTCTGT 58.671 41.667 0.00 0.00 0.00 3.41
78 79 5.652014 AGAGAAGTGTCCTCTCTTATGTCTG 59.348 44.000 0.00 0.00 37.55 3.51
79 80 5.826643 AGAGAAGTGTCCTCTCTTATGTCT 58.173 41.667 0.00 0.00 37.55 3.41
114 115 9.326413 GTGTTTCATATATTGTGTTAGGTAGCT 57.674 33.333 0.00 0.00 0.00 3.32
115 116 8.557029 GGTGTTTCATATATTGTGTTAGGTAGC 58.443 37.037 0.00 0.00 0.00 3.58
116 117 9.832445 AGGTGTTTCATATATTGTGTTAGGTAG 57.168 33.333 0.00 0.00 0.00 3.18
128 129 9.596308 GGGGGTTAATTTAGGTGTTTCATATAT 57.404 33.333 0.00 0.00 0.00 0.86
129 130 8.999905 GGGGGTTAATTTAGGTGTTTCATATA 57.000 34.615 0.00 0.00 0.00 0.86
130 131 7.907841 GGGGGTTAATTTAGGTGTTTCATAT 57.092 36.000 0.00 0.00 0.00 1.78
438 439 1.069022 CGTCAACATTTCTGTGGCTGG 60.069 52.381 0.00 0.00 35.22 4.85
439 440 1.664016 GCGTCAACATTTCTGTGGCTG 60.664 52.381 0.00 0.00 35.22 4.85
440 441 0.593128 GCGTCAACATTTCTGTGGCT 59.407 50.000 0.00 0.00 35.22 4.75
441 442 0.725784 CGCGTCAACATTTCTGTGGC 60.726 55.000 0.00 0.00 35.22 5.01
442 443 0.586319 ACGCGTCAACATTTCTGTGG 59.414 50.000 5.58 0.00 35.22 4.17
443 444 1.260297 TCACGCGTCAACATTTCTGTG 59.740 47.619 9.86 0.00 35.22 3.66
444 445 1.577468 TCACGCGTCAACATTTCTGT 58.423 45.000 9.86 0.00 37.12 3.41
445 446 2.661504 TTCACGCGTCAACATTTCTG 57.338 45.000 9.86 0.00 0.00 3.02
446 447 2.665519 GCATTCACGCGTCAACATTTCT 60.666 45.455 9.86 0.00 0.00 2.52
447 448 1.643810 GCATTCACGCGTCAACATTTC 59.356 47.619 9.86 0.00 0.00 2.17
448 449 1.665735 GGCATTCACGCGTCAACATTT 60.666 47.619 9.86 0.00 0.00 2.32
449 450 0.109781 GGCATTCACGCGTCAACATT 60.110 50.000 9.86 0.00 0.00 2.71
450 451 0.955428 AGGCATTCACGCGTCAACAT 60.955 50.000 9.86 0.00 0.00 2.71
451 452 0.319986 TAGGCATTCACGCGTCAACA 60.320 50.000 9.86 0.00 0.00 3.33
452 453 1.006832 ATAGGCATTCACGCGTCAAC 58.993 50.000 9.86 0.00 0.00 3.18
453 454 1.396648 CAATAGGCATTCACGCGTCAA 59.603 47.619 9.86 1.71 0.00 3.18
454 455 1.006086 CAATAGGCATTCACGCGTCA 58.994 50.000 9.86 0.00 0.00 4.35
455 456 0.304705 CCAATAGGCATTCACGCGTC 59.695 55.000 9.86 0.00 0.00 5.19
456 457 0.392461 ACCAATAGGCATTCACGCGT 60.392 50.000 5.58 5.58 39.06 6.01
457 458 0.304705 GACCAATAGGCATTCACGCG 59.695 55.000 3.53 3.53 39.06 6.01
458 459 0.663153 GGACCAATAGGCATTCACGC 59.337 55.000 0.00 0.00 39.06 5.34
459 460 1.308998 GGGACCAATAGGCATTCACG 58.691 55.000 0.00 0.00 39.06 4.35
460 461 1.308998 CGGGACCAATAGGCATTCAC 58.691 55.000 0.00 0.00 39.06 3.18
461 462 0.182537 CCGGGACCAATAGGCATTCA 59.817 55.000 0.00 0.00 39.06 2.57
462 463 0.182775 ACCGGGACCAATAGGCATTC 59.817 55.000 6.32 0.00 39.06 2.67
463 464 0.629058 AACCGGGACCAATAGGCATT 59.371 50.000 6.32 0.00 39.06 3.56
464 465 0.106719 CAACCGGGACCAATAGGCAT 60.107 55.000 6.32 0.00 39.06 4.40
465 466 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
466 467 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
467 468 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
468 469 1.029947 GCACCAACCGGGACCAATAG 61.030 60.000 6.32 0.00 41.15 1.73
469 470 1.001887 GCACCAACCGGGACCAATA 60.002 57.895 6.32 0.00 41.15 1.90
470 471 2.282887 GCACCAACCGGGACCAAT 60.283 61.111 6.32 0.00 41.15 3.16
471 472 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
486 487 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
487 488 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
488 489 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
489 490 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
490 491 2.282887 CCCTTTGGTCCCGGTTGG 60.283 66.667 0.00 0.00 0.00 3.77
491 492 2.518933 ACCCTTTGGTCCCGGTTG 59.481 61.111 0.00 0.00 43.06 3.77
500 501 1.001641 CAGGCAGGAGACCCTTTGG 60.002 63.158 0.00 0.00 42.02 3.28
501 502 1.001641 CCAGGCAGGAGACCCTTTG 60.002 63.158 0.00 0.00 42.02 2.77
502 503 2.234296 CCCAGGCAGGAGACCCTTT 61.234 63.158 0.00 0.00 42.02 3.11
503 504 2.612115 CCCAGGCAGGAGACCCTT 60.612 66.667 0.00 0.00 42.02 3.95
506 507 3.791586 GAGCCCAGGCAGGAGACC 61.792 72.222 12.03 0.00 44.88 3.85
507 508 3.791586 GGAGCCCAGGCAGGAGAC 61.792 72.222 12.03 0.00 44.88 3.36
540 541 3.866582 CGGGACAGATGGGCCTCC 61.867 72.222 4.53 2.00 0.00 4.30
541 542 3.866582 CCGGGACAGATGGGCCTC 61.867 72.222 4.53 0.00 0.00 4.70
542 543 4.741239 ACCGGGACAGATGGGCCT 62.741 66.667 6.32 0.00 0.00 5.19
543 544 3.699134 GAACCGGGACAGATGGGCC 62.699 68.421 6.32 0.00 0.00 5.80
544 545 2.124695 GAACCGGGACAGATGGGC 60.125 66.667 6.32 0.00 0.00 5.36
545 546 1.221840 CAGAACCGGGACAGATGGG 59.778 63.158 6.32 0.00 0.00 4.00
546 547 1.221840 CCAGAACCGGGACAGATGG 59.778 63.158 6.32 0.80 0.00 3.51
547 548 0.833287 ATCCAGAACCGGGACAGATG 59.167 55.000 6.32 0.00 37.23 2.90
548 549 1.210478 CAATCCAGAACCGGGACAGAT 59.790 52.381 6.32 3.35 37.23 2.90
549 550 0.613260 CAATCCAGAACCGGGACAGA 59.387 55.000 6.32 0.92 37.23 3.41
550 551 0.613260 TCAATCCAGAACCGGGACAG 59.387 55.000 6.32 0.00 37.23 3.51
551 552 1.060729 TTCAATCCAGAACCGGGACA 58.939 50.000 6.32 0.00 37.23 4.02
552 553 1.450025 GTTCAATCCAGAACCGGGAC 58.550 55.000 6.32 0.00 41.52 4.46
553 554 3.948735 GTTCAATCCAGAACCGGGA 57.051 52.632 6.32 0.00 41.52 5.14
558 559 1.003233 AGTCCCGGTTCAATCCAGAAC 59.997 52.381 0.00 0.00 45.50 3.01
559 560 1.358152 AGTCCCGGTTCAATCCAGAA 58.642 50.000 0.00 0.00 0.00 3.02
560 561 2.241281 TAGTCCCGGTTCAATCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
561 562 3.270877 CTTTAGTCCCGGTTCAATCCAG 58.729 50.000 0.00 0.00 0.00 3.86
562 563 2.026636 CCTTTAGTCCCGGTTCAATCCA 60.027 50.000 0.00 0.00 0.00 3.41
563 564 2.640184 CCTTTAGTCCCGGTTCAATCC 58.360 52.381 0.00 0.00 0.00 3.01
564 565 2.237893 TCCCTTTAGTCCCGGTTCAATC 59.762 50.000 0.00 0.00 0.00 2.67
565 566 2.026542 GTCCCTTTAGTCCCGGTTCAAT 60.027 50.000 0.00 0.00 0.00 2.57
566 567 1.348696 GTCCCTTTAGTCCCGGTTCAA 59.651 52.381 0.00 0.00 0.00 2.69
567 568 0.978907 GTCCCTTTAGTCCCGGTTCA 59.021 55.000 0.00 0.00 0.00 3.18
568 569 0.978907 TGTCCCTTTAGTCCCGGTTC 59.021 55.000 0.00 0.00 0.00 3.62
569 570 0.981943 CTGTCCCTTTAGTCCCGGTT 59.018 55.000 0.00 0.00 0.00 4.44
570 571 0.908180 CCTGTCCCTTTAGTCCCGGT 60.908 60.000 0.00 0.00 0.00 5.28
571 572 1.623542 CCCTGTCCCTTTAGTCCCGG 61.624 65.000 0.00 0.00 0.00 5.73
572 573 1.905512 CCCTGTCCCTTTAGTCCCG 59.094 63.158 0.00 0.00 0.00 5.14
573 574 1.205460 TGCCCTGTCCCTTTAGTCCC 61.205 60.000 0.00 0.00 0.00 4.46
574 575 0.919710 ATGCCCTGTCCCTTTAGTCC 59.080 55.000 0.00 0.00 0.00 3.85
575 576 2.808906 AATGCCCTGTCCCTTTAGTC 57.191 50.000 0.00 0.00 0.00 2.59
576 577 3.190439 ACTAATGCCCTGTCCCTTTAGT 58.810 45.455 0.00 0.00 31.21 2.24
577 578 3.933861 ACTAATGCCCTGTCCCTTTAG 57.066 47.619 0.00 0.00 0.00 1.85
578 579 3.457012 GGTACTAATGCCCTGTCCCTTTA 59.543 47.826 0.00 0.00 0.00 1.85
579 580 2.241430 GGTACTAATGCCCTGTCCCTTT 59.759 50.000 0.00 0.00 0.00 3.11
580 581 1.844497 GGTACTAATGCCCTGTCCCTT 59.156 52.381 0.00 0.00 0.00 3.95
581 582 1.508256 GGTACTAATGCCCTGTCCCT 58.492 55.000 0.00 0.00 0.00 4.20
582 583 0.106149 CGGTACTAATGCCCTGTCCC 59.894 60.000 0.00 0.00 0.00 4.46
583 584 1.117150 TCGGTACTAATGCCCTGTCC 58.883 55.000 0.00 0.00 0.00 4.02
584 585 1.202498 GGTCGGTACTAATGCCCTGTC 60.202 57.143 0.00 0.00 0.00 3.51
585 586 0.828677 GGTCGGTACTAATGCCCTGT 59.171 55.000 0.00 0.00 0.00 4.00
586 587 0.106149 GGGTCGGTACTAATGCCCTG 59.894 60.000 0.00 0.00 33.58 4.45
587 588 0.031414 AGGGTCGGTACTAATGCCCT 60.031 55.000 0.00 0.00 41.31 5.19
588 589 0.835276 AAGGGTCGGTACTAATGCCC 59.165 55.000 0.00 0.00 36.46 5.36
589 590 2.704464 AAAGGGTCGGTACTAATGCC 57.296 50.000 0.00 0.00 0.00 4.40
590 591 4.366586 GACTAAAGGGTCGGTACTAATGC 58.633 47.826 0.00 0.00 0.00 3.56
591 592 4.202192 GGGACTAAAGGGTCGGTACTAATG 60.202 50.000 0.00 0.00 37.12 1.90
592 593 3.963374 GGGACTAAAGGGTCGGTACTAAT 59.037 47.826 0.00 0.00 37.12 1.73
593 594 3.365472 GGGACTAAAGGGTCGGTACTAA 58.635 50.000 0.00 0.00 37.12 2.24
594 595 2.683742 CGGGACTAAAGGGTCGGTACTA 60.684 54.545 0.00 0.00 37.12 1.82
595 596 1.857965 GGGACTAAAGGGTCGGTACT 58.142 55.000 0.00 0.00 37.12 2.73
596 597 0.457443 CGGGACTAAAGGGTCGGTAC 59.543 60.000 0.00 0.00 37.12 3.34
597 598 0.684153 CCGGGACTAAAGGGTCGGTA 60.684 60.000 0.00 0.00 37.12 4.02
598 599 1.986210 CCGGGACTAAAGGGTCGGT 60.986 63.158 0.00 0.00 37.12 4.69
599 600 1.547472 AACCGGGACTAAAGGGTCGG 61.547 60.000 6.32 0.00 42.69 4.79
600 601 1.134995 GTAACCGGGACTAAAGGGTCG 60.135 57.143 6.32 0.00 37.12 4.79
601 602 1.901833 TGTAACCGGGACTAAAGGGTC 59.098 52.381 6.32 0.00 35.66 4.46
602 603 1.904537 CTGTAACCGGGACTAAAGGGT 59.095 52.381 6.32 0.00 0.00 4.34
603 604 2.181975 TCTGTAACCGGGACTAAAGGG 58.818 52.381 6.32 0.00 0.00 3.95
604 605 3.593096 GTTCTGTAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
605 606 3.593096 GGTTCTGTAACCGGGACTAAAG 58.407 50.000 6.32 0.00 45.61 1.85
606 607 3.683365 GGTTCTGTAACCGGGACTAAA 57.317 47.619 6.32 0.00 45.61 1.85
616 617 2.551032 CCTTTTGTCCCGGTTCTGTAAC 59.449 50.000 0.00 0.00 34.66 2.50
617 618 2.853705 CCTTTTGTCCCGGTTCTGTAA 58.146 47.619 0.00 0.00 0.00 2.41
618 619 1.543871 GCCTTTTGTCCCGGTTCTGTA 60.544 52.381 0.00 0.00 0.00 2.74
619 620 0.822121 GCCTTTTGTCCCGGTTCTGT 60.822 55.000 0.00 0.00 0.00 3.41
620 621 1.524008 GGCCTTTTGTCCCGGTTCTG 61.524 60.000 0.00 0.00 0.00 3.02
621 622 1.228459 GGCCTTTTGTCCCGGTTCT 60.228 57.895 0.00 0.00 0.00 3.01
622 623 2.273179 GGGCCTTTTGTCCCGGTTC 61.273 63.158 0.84 0.00 32.00 3.62
623 624 2.203582 GGGCCTTTTGTCCCGGTT 60.204 61.111 0.84 0.00 32.00 4.44
627 628 2.047061 AGAAAAAGGGCCTTTTGTCCC 58.953 47.619 37.49 26.49 41.98 4.46
628 629 3.006537 GGTAGAAAAAGGGCCTTTTGTCC 59.993 47.826 37.49 29.89 41.98 4.02
629 630 3.639561 TGGTAGAAAAAGGGCCTTTTGTC 59.360 43.478 37.49 31.83 41.98 3.18
630 631 3.641436 CTGGTAGAAAAAGGGCCTTTTGT 59.359 43.478 37.49 29.63 41.98 2.83
631 632 3.641436 ACTGGTAGAAAAAGGGCCTTTTG 59.359 43.478 37.49 26.41 41.98 2.44
632 633 3.641436 CACTGGTAGAAAAAGGGCCTTTT 59.359 43.478 33.25 33.25 44.27 2.27
633 634 3.117284 TCACTGGTAGAAAAAGGGCCTTT 60.117 43.478 25.68 25.68 34.94 3.11
634 635 2.445525 TCACTGGTAGAAAAAGGGCCTT 59.554 45.455 14.48 14.48 0.00 4.35
635 636 2.062636 TCACTGGTAGAAAAAGGGCCT 58.937 47.619 0.00 0.00 0.00 5.19
636 637 2.557056 GTTCACTGGTAGAAAAAGGGCC 59.443 50.000 0.00 0.00 0.00 5.80
637 638 2.557056 GGTTCACTGGTAGAAAAAGGGC 59.443 50.000 0.00 0.00 0.00 5.19
638 639 4.100279 AGGTTCACTGGTAGAAAAAGGG 57.900 45.455 0.00 0.00 0.00 3.95
639 640 4.278419 CCAAGGTTCACTGGTAGAAAAAGG 59.722 45.833 0.00 0.00 0.00 3.11
640 641 4.887655 ACCAAGGTTCACTGGTAGAAAAAG 59.112 41.667 0.00 0.00 31.55 2.27
641 642 4.862371 ACCAAGGTTCACTGGTAGAAAAA 58.138 39.130 0.00 0.00 31.55 1.94
642 643 4.513406 ACCAAGGTTCACTGGTAGAAAA 57.487 40.909 0.00 0.00 31.55 2.29
643 644 4.204012 CAACCAAGGTTCACTGGTAGAAA 58.796 43.478 0.51 0.00 36.00 2.52
644 645 3.815809 CAACCAAGGTTCACTGGTAGAA 58.184 45.455 0.51 0.00 36.00 2.10
645 646 2.486548 GCAACCAAGGTTCACTGGTAGA 60.487 50.000 0.51 0.00 36.00 2.59
646 647 1.880027 GCAACCAAGGTTCACTGGTAG 59.120 52.381 0.51 0.00 36.00 3.18
647 648 1.213182 TGCAACCAAGGTTCACTGGTA 59.787 47.619 0.51 0.00 36.00 3.25
648 649 0.033601 TGCAACCAAGGTTCACTGGT 60.034 50.000 0.51 0.00 36.00 4.00
649 650 0.670162 CTGCAACCAAGGTTCACTGG 59.330 55.000 0.51 0.00 36.00 4.00
650 651 0.670162 CCTGCAACCAAGGTTCACTG 59.330 55.000 0.51 2.09 36.00 3.66
651 652 0.468029 CCCTGCAACCAAGGTTCACT 60.468 55.000 0.51 0.00 36.00 3.41
652 653 2.041153 CCCTGCAACCAAGGTTCAC 58.959 57.895 0.51 0.00 36.00 3.18
653 654 1.832167 GCCCTGCAACCAAGGTTCA 60.832 57.895 0.51 3.20 36.00 3.18
654 655 1.398958 TTGCCCTGCAACCAAGGTTC 61.399 55.000 0.51 0.00 43.99 3.62
655 656 1.382420 TTGCCCTGCAACCAAGGTT 60.382 52.632 0.00 0.00 43.99 3.50
656 657 2.281767 TTGCCCTGCAACCAAGGT 59.718 55.556 0.00 0.00 43.99 3.50
682 683 0.660595 GTCCATAGCGACATCCGACG 60.661 60.000 0.00 0.00 41.76 5.12
683 684 0.318784 GGTCCATAGCGACATCCGAC 60.319 60.000 0.00 0.00 41.76 4.79
684 685 2.038690 GGTCCATAGCGACATCCGA 58.961 57.895 0.00 0.00 41.76 4.55
685 686 4.655527 GGTCCATAGCGACATCCG 57.344 61.111 0.00 0.00 42.21 4.18
693 694 2.923020 CAAAATTGCAACGGTCCATAGC 59.077 45.455 0.00 0.00 0.00 2.97
694 695 4.433186 TCAAAATTGCAACGGTCCATAG 57.567 40.909 0.00 0.00 0.00 2.23
695 696 4.438065 CGATCAAAATTGCAACGGTCCATA 60.438 41.667 0.00 0.00 0.00 2.74
696 697 3.673052 CGATCAAAATTGCAACGGTCCAT 60.673 43.478 0.00 0.00 0.00 3.41
697 698 2.351253 CGATCAAAATTGCAACGGTCCA 60.351 45.455 0.00 0.00 0.00 4.02
698 699 2.095466 TCGATCAAAATTGCAACGGTCC 60.095 45.455 0.00 0.00 0.00 4.46
699 700 3.196007 TCGATCAAAATTGCAACGGTC 57.804 42.857 0.00 0.00 0.00 4.79
700 701 3.564511 CTTCGATCAAAATTGCAACGGT 58.435 40.909 0.00 0.00 0.00 4.83
701 702 2.916716 CCTTCGATCAAAATTGCAACGG 59.083 45.455 0.00 0.00 0.00 4.44
702 703 2.916716 CCCTTCGATCAAAATTGCAACG 59.083 45.455 0.00 0.00 0.00 4.10
703 704 3.056891 TCCCCTTCGATCAAAATTGCAAC 60.057 43.478 0.00 0.00 0.00 4.17
704 705 3.161067 TCCCCTTCGATCAAAATTGCAA 58.839 40.909 0.00 0.00 0.00 4.08
705 706 2.801483 TCCCCTTCGATCAAAATTGCA 58.199 42.857 0.00 0.00 0.00 4.08
706 707 3.056891 TGTTCCCCTTCGATCAAAATTGC 60.057 43.478 0.00 0.00 0.00 3.56
707 708 4.782019 TGTTCCCCTTCGATCAAAATTG 57.218 40.909 0.00 0.00 0.00 2.32
708 709 5.480073 TGATTGTTCCCCTTCGATCAAAATT 59.520 36.000 0.00 0.00 33.27 1.82
709 710 5.016173 TGATTGTTCCCCTTCGATCAAAAT 58.984 37.500 0.00 0.00 33.27 1.82
710 711 4.402829 TGATTGTTCCCCTTCGATCAAAA 58.597 39.130 0.00 0.00 33.27 2.44
711 712 4.009675 CTGATTGTTCCCCTTCGATCAAA 58.990 43.478 0.00 0.00 35.07 2.69
712 713 3.609853 CTGATTGTTCCCCTTCGATCAA 58.390 45.455 0.00 0.00 35.07 2.57
713 714 2.092968 CCTGATTGTTCCCCTTCGATCA 60.093 50.000 0.00 0.00 34.53 2.92
714 715 2.170607 TCCTGATTGTTCCCCTTCGATC 59.829 50.000 0.00 0.00 0.00 3.69
715 716 2.171448 CTCCTGATTGTTCCCCTTCGAT 59.829 50.000 0.00 0.00 0.00 3.59
716 717 1.555075 CTCCTGATTGTTCCCCTTCGA 59.445 52.381 0.00 0.00 0.00 3.71
717 718 1.407437 CCTCCTGATTGTTCCCCTTCG 60.407 57.143 0.00 0.00 0.00 3.79
718 719 1.916181 TCCTCCTGATTGTTCCCCTTC 59.084 52.381 0.00 0.00 0.00 3.46
719 720 1.918957 CTCCTCCTGATTGTTCCCCTT 59.081 52.381 0.00 0.00 0.00 3.95
720 721 1.589414 CTCCTCCTGATTGTTCCCCT 58.411 55.000 0.00 0.00 0.00 4.79
721 722 0.548510 CCTCCTCCTGATTGTTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
722 723 1.210722 GTCCTCCTCCTGATTGTTCCC 59.789 57.143 0.00 0.00 0.00 3.97
723 724 1.134670 CGTCCTCCTCCTGATTGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
724 725 1.825474 TCGTCCTCCTCCTGATTGTTC 59.175 52.381 0.00 0.00 0.00 3.18
725 726 1.938585 TCGTCCTCCTCCTGATTGTT 58.061 50.000 0.00 0.00 0.00 2.83
726 727 1.827969 CTTCGTCCTCCTCCTGATTGT 59.172 52.381 0.00 0.00 0.00 2.71
727 728 1.472376 GCTTCGTCCTCCTCCTGATTG 60.472 57.143 0.00 0.00 0.00 2.67
728 729 0.827368 GCTTCGTCCTCCTCCTGATT 59.173 55.000 0.00 0.00 0.00 2.57
729 730 0.324738 TGCTTCGTCCTCCTCCTGAT 60.325 55.000 0.00 0.00 0.00 2.90
730 731 0.541998 TTGCTTCGTCCTCCTCCTGA 60.542 55.000 0.00 0.00 0.00 3.86
731 732 0.108424 CTTGCTTCGTCCTCCTCCTG 60.108 60.000 0.00 0.00 0.00 3.86
732 733 1.261238 CCTTGCTTCGTCCTCCTCCT 61.261 60.000 0.00 0.00 0.00 3.69
733 734 1.219393 CCTTGCTTCGTCCTCCTCC 59.781 63.158 0.00 0.00 0.00 4.30
734 735 1.219393 CCCTTGCTTCGTCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
735 736 1.229209 TCCCTTGCTTCGTCCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
736 737 1.219393 CTCCCTTGCTTCGTCCTCC 59.781 63.158 0.00 0.00 0.00 4.30
737 738 0.108567 GACTCCCTTGCTTCGTCCTC 60.109 60.000 0.00 0.00 0.00 3.71
738 739 0.832135 TGACTCCCTTGCTTCGTCCT 60.832 55.000 0.00 0.00 0.00 3.85
739 740 0.034896 TTGACTCCCTTGCTTCGTCC 59.965 55.000 0.00 0.00 0.00 4.79
740 741 1.878953 TTTGACTCCCTTGCTTCGTC 58.121 50.000 0.00 0.00 0.00 4.20
741 742 2.039084 AGATTTGACTCCCTTGCTTCGT 59.961 45.455 0.00 0.00 0.00 3.85
742 743 2.417933 CAGATTTGACTCCCTTGCTTCG 59.582 50.000 0.00 0.00 0.00 3.79
743 744 3.679389 TCAGATTTGACTCCCTTGCTTC 58.321 45.455 0.00 0.00 0.00 3.86
744 745 3.795688 TCAGATTTGACTCCCTTGCTT 57.204 42.857 0.00 0.00 0.00 3.91
752 753 8.885557 GCTATTAAGAGCCGTCAGATTTGACTC 61.886 44.444 11.08 5.58 42.14 3.36
753 754 7.177396 GCTATTAAGAGCCGTCAGATTTGACT 61.177 42.308 11.08 0.00 42.14 3.41
754 755 5.050702 GCTATTAAGAGCCGTCAGATTTGAC 60.051 44.000 11.08 6.31 40.52 3.18
755 756 5.050490 GCTATTAAGAGCCGTCAGATTTGA 58.950 41.667 11.08 0.00 36.38 2.69
756 757 4.084849 CGCTATTAAGAGCCGTCAGATTTG 60.085 45.833 16.10 0.00 39.43 2.32
757 758 4.051922 CGCTATTAAGAGCCGTCAGATTT 58.948 43.478 16.10 0.00 39.43 2.17
758 759 3.553096 CCGCTATTAAGAGCCGTCAGATT 60.553 47.826 16.10 0.00 39.43 2.40
759 760 2.029828 CCGCTATTAAGAGCCGTCAGAT 60.030 50.000 16.10 0.00 39.43 2.90
760 761 1.337071 CCGCTATTAAGAGCCGTCAGA 59.663 52.381 16.10 0.00 39.43 3.27
761 762 1.067212 ACCGCTATTAAGAGCCGTCAG 59.933 52.381 16.10 2.01 39.43 3.51
762 763 1.108776 ACCGCTATTAAGAGCCGTCA 58.891 50.000 16.10 0.00 39.43 4.35
763 764 3.500014 GATACCGCTATTAAGAGCCGTC 58.500 50.000 17.34 7.02 39.43 4.79
764 765 2.095364 CGATACCGCTATTAAGAGCCGT 60.095 50.000 17.80 17.80 39.43 5.68
765 766 2.161012 TCGATACCGCTATTAAGAGCCG 59.839 50.000 16.10 12.16 39.43 5.52
766 767 3.760537 CTCGATACCGCTATTAAGAGCC 58.239 50.000 16.10 1.19 39.43 4.70
767 768 3.172824 GCTCGATACCGCTATTAAGAGC 58.827 50.000 12.13 12.13 42.10 4.09
768 769 3.418094 CGCTCGATACCGCTATTAAGAG 58.582 50.000 0.00 0.00 35.37 2.85
769 770 2.161012 CCGCTCGATACCGCTATTAAGA 59.839 50.000 0.00 0.00 35.37 2.10
770 771 2.516923 CCGCTCGATACCGCTATTAAG 58.483 52.381 0.00 0.00 35.37 1.85
771 772 1.401931 GCCGCTCGATACCGCTATTAA 60.402 52.381 0.00 0.00 35.37 1.40
772 773 0.169672 GCCGCTCGATACCGCTATTA 59.830 55.000 0.00 0.00 35.37 0.98
773 774 1.080705 GCCGCTCGATACCGCTATT 60.081 57.895 0.00 0.00 35.37 1.73
774 775 1.972223 AGCCGCTCGATACCGCTAT 60.972 57.895 0.00 0.00 35.37 2.97
775 776 2.593725 AGCCGCTCGATACCGCTA 60.594 61.111 0.00 0.00 35.37 4.26
776 777 4.271816 CAGCCGCTCGATACCGCT 62.272 66.667 0.00 0.00 35.37 5.52
778 779 4.647615 CCCAGCCGCTCGATACCG 62.648 72.222 0.00 0.00 37.07 4.02
779 780 4.301027 CCCCAGCCGCTCGATACC 62.301 72.222 0.00 0.00 0.00 2.73
780 781 4.971125 GCCCCAGCCGCTCGATAC 62.971 72.222 0.00 0.00 0.00 2.24
842 843 3.454371 TCTCTTCAATTAGCGTAGGGC 57.546 47.619 0.00 0.00 44.05 5.19
843 844 5.875359 AGTTTTCTCTTCAATTAGCGTAGGG 59.125 40.000 0.00 0.00 0.00 3.53
844 845 6.969828 AGTTTTCTCTTCAATTAGCGTAGG 57.030 37.500 0.00 0.00 0.00 3.18
859 860 2.094442 CCGACTGGAGGAGAGTTTTCTC 60.094 54.545 0.00 0.00 42.88 2.87
876 881 1.276844 GCGCTGATTACATGCCGAC 59.723 57.895 0.00 0.00 0.00 4.79
900 905 1.751351 CCGCAGAAGACATACAGAGGA 59.249 52.381 0.00 0.00 0.00 3.71
907 912 1.405526 GGCAGAACCGCAGAAGACATA 60.406 52.381 0.00 0.00 0.00 2.29
908 913 0.674895 GGCAGAACCGCAGAAGACAT 60.675 55.000 0.00 0.00 0.00 3.06
919 925 7.224297 TCTCCATGTATTTTATAGGCAGAACC 58.776 38.462 0.00 0.00 39.61 3.62
920 926 8.150945 TCTCTCCATGTATTTTATAGGCAGAAC 58.849 37.037 0.00 0.00 0.00 3.01
921 927 8.262601 TCTCTCCATGTATTTTATAGGCAGAA 57.737 34.615 0.00 0.00 0.00 3.02
923 929 7.816995 GTCTCTCTCCATGTATTTTATAGGCAG 59.183 40.741 0.00 0.00 0.00 4.85
924 930 7.510685 AGTCTCTCTCCATGTATTTTATAGGCA 59.489 37.037 0.00 0.00 0.00 4.75
925 931 7.902087 AGTCTCTCTCCATGTATTTTATAGGC 58.098 38.462 0.00 0.00 0.00 3.93
926 932 9.308000 AGAGTCTCTCTCCATGTATTTTATAGG 57.692 37.037 0.00 0.00 43.71 2.57
942 948 3.933861 GAGAGGAAGGAGAGTCTCTCT 57.066 52.381 25.55 13.47 45.12 3.10
1172 1197 1.679311 GTGGAGGTCTGCATGTCCA 59.321 57.895 0.00 0.00 36.72 4.02
1190 1215 3.598678 CATGCATGCACTCTCAACG 57.401 52.632 25.37 0.18 0.00 4.10
1292 1336 3.525199 AGTTGAGGATATGACTTGCCCTT 59.475 43.478 0.00 0.00 0.00 3.95
1496 1541 0.249120 CTCTTGGCCATGTCCGTGTA 59.751 55.000 17.54 0.00 0.00 2.90
1668 1713 1.675801 CTGAGTGCTCCTGGCTTCA 59.324 57.895 0.00 0.00 42.39 3.02
2004 2049 0.328592 TACCTCACTCTCACTCGGCT 59.671 55.000 0.00 0.00 0.00 5.52
2098 2143 1.130749 CTACTCCTGTCGACACGAAGG 59.869 57.143 15.76 14.66 37.72 3.46
2221 2267 1.000506 GTCCGTTGCACTACTTCCTCA 59.999 52.381 0.00 0.00 0.00 3.86
2372 2418 0.179215 CCGATGCTTCGCTGTTTGTC 60.179 55.000 15.99 0.00 44.12 3.18
2557 2603 2.354403 GCTTTTCTGCATGGCCATCTTT 60.354 45.455 17.61 0.00 0.00 2.52
2915 2961 2.058595 GTCTGCTCCTTCCCCGCTA 61.059 63.158 0.00 0.00 0.00 4.26
2981 3027 1.803519 CTCGCGCACTGGAGTCTTC 60.804 63.158 8.75 0.00 0.00 2.87
3158 3204 4.742649 TCGTCGGCTGGCTCTCCT 62.743 66.667 0.00 0.00 0.00 3.69
3303 3373 1.301716 CTCATAATGGGTCGCCGGG 60.302 63.158 2.18 0.00 0.00 5.73
3414 3500 4.778143 GTCATCCGCGGCACCCTT 62.778 66.667 23.51 0.00 0.00 3.95
3530 3616 1.348064 CTCAGGAACAGGTGGTACCA 58.652 55.000 11.60 11.60 41.95 3.25
3566 3652 3.708890 ACGACACGTGTACTTTGATGAA 58.291 40.909 23.44 0.00 39.18 2.57
3983 4069 1.683011 CGCCATCTTCTTTCCACCCAT 60.683 52.381 0.00 0.00 0.00 4.00
4349 4435 6.531503 TCTCTTCGTCAAATAATGAGAGGT 57.468 37.500 0.00 0.00 39.19 3.85
4478 4564 1.832608 TCACCGCTGTGACAGTCCT 60.833 57.895 14.82 0.00 46.40 3.85
4518 4604 5.163591 ACGAAGTTGGTTTTTCTGTTAAGGG 60.164 40.000 0.00 0.00 37.78 3.95
4550 4636 8.969121 TTTCTCGTGATAATTTCGTAACTGTA 57.031 30.769 0.00 0.00 0.00 2.74
4643 4729 3.680458 CACCTTTTCCTTCTAACTCTCGC 59.320 47.826 0.00 0.00 0.00 5.03
5031 5340 2.125673 GGTCGTGCACGCCTACAT 60.126 61.111 33.63 0.00 39.60 2.29
5381 5784 1.687612 CAACCTCACCCTCATGGCT 59.312 57.895 0.00 0.00 37.83 4.75
5477 5880 2.021457 TCCGACGAGCTCAATGACATA 58.979 47.619 15.40 0.00 0.00 2.29
5479 5882 0.171231 CTCCGACGAGCTCAATGACA 59.829 55.000 15.40 0.00 0.00 3.58
5909 6318 0.680921 ACGGGTCCGAGGTCGATAAA 60.681 55.000 16.90 0.00 43.02 1.40
5911 6320 0.250038 CTACGGGTCCGAGGTCGATA 60.250 60.000 16.90 0.00 43.02 2.92
5958 6367 1.684049 CCTCCTCCTCTTCCAGCGT 60.684 63.158 0.00 0.00 0.00 5.07
5966 6375 2.043450 CTCGGCACCTCCTCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
6033 6446 1.427753 CCCTCCACAAACCCTAAACCT 59.572 52.381 0.00 0.00 0.00 3.50
6087 7148 1.547755 TCTCTCCCTCCACTCCCCT 60.548 63.158 0.00 0.00 0.00 4.79
6090 7151 1.760480 GCCTCTCTCCCTCCACTCC 60.760 68.421 0.00 0.00 0.00 3.85
6092 7153 2.043450 CGCCTCTCTCCCTCCACT 60.043 66.667 0.00 0.00 0.00 4.00
6188 7316 2.517798 GCCTAACCCTCGATCCCCC 61.518 68.421 0.00 0.00 0.00 5.40
6281 7411 3.525199 AGTTGAGGATATGACTTGCCCTT 59.475 43.478 0.00 0.00 0.00 3.95
6380 7512 9.778993 ATACACGTAAACAACTACTACTATGTG 57.221 33.333 0.00 0.00 34.13 3.21
6778 7997 2.607187 GACATAAGTGTGTGCGCTAGT 58.393 47.619 9.73 0.00 39.09 2.57
6819 8042 0.036732 ATCACACGAACCATGCCAGT 59.963 50.000 0.00 0.00 0.00 4.00
6820 8043 0.729116 GATCACACGAACCATGCCAG 59.271 55.000 0.00 0.00 0.00 4.85
6821 8044 0.676466 GGATCACACGAACCATGCCA 60.676 55.000 0.00 0.00 34.27 4.92
6823 8046 1.009829 GAGGATCACACGAACCATGC 58.990 55.000 0.00 0.00 36.55 4.06
6824 8047 2.385013 TGAGGATCACACGAACCATG 57.615 50.000 0.00 0.00 42.56 3.66
6926 8177 1.892338 CGCGAGGTAGTTGGGGTTA 59.108 57.895 0.00 0.00 0.00 2.85
7341 8683 7.278424 GCTGCCAAAATATTTGAAGAAAGCATA 59.722 33.333 0.39 0.00 0.00 3.14
7353 8695 7.422465 TCCTTAATCAGCTGCCAAAATATTT 57.578 32.000 9.47 0.00 0.00 1.40
7398 8740 2.890311 TCGGTTGGCATCAATTTTGAGT 59.110 40.909 0.00 0.00 41.08 3.41
7404 8746 3.959535 AACAATCGGTTGGCATCAATT 57.040 38.095 13.99 0.00 38.60 2.32
7456 8798 9.436957 GAGTTTTTCTTTGTAGGAGTCATGATA 57.563 33.333 0.00 0.00 0.00 2.15
7465 8807 9.793259 ATTATGAGTGAGTTTTTCTTTGTAGGA 57.207 29.630 0.00 0.00 0.00 2.94
7482 8824 9.708222 CGTTCTTGAAATCCTAAATTATGAGTG 57.292 33.333 0.00 0.00 0.00 3.51
7483 8825 8.893727 CCGTTCTTGAAATCCTAAATTATGAGT 58.106 33.333 0.00 0.00 0.00 3.41
7484 8826 8.893727 ACCGTTCTTGAAATCCTAAATTATGAG 58.106 33.333 0.00 0.00 0.00 2.90
7485 8827 8.801882 ACCGTTCTTGAAATCCTAAATTATGA 57.198 30.769 0.00 0.00 0.00 2.15
7501 8846 8.335356 CAGTGTATATTATTTGGACCGTTCTTG 58.665 37.037 0.00 0.00 0.00 3.02
7558 8903 4.027702 GCACTGCGCCTAAATAAAAATTCG 60.028 41.667 4.18 0.00 32.94 3.34
7574 8919 1.011463 GCATCGAGATTGCACTGCG 60.011 57.895 4.64 0.00 0.00 5.18
7790 9142 4.837860 GGGTAATCCAATGCCCATAATTCA 59.162 41.667 0.00 0.00 40.76 2.57
7791 9143 5.086621 AGGGTAATCCAATGCCCATAATTC 58.913 41.667 3.28 0.00 43.42 2.17
7792 9144 5.091906 AGGGTAATCCAATGCCCATAATT 57.908 39.130 3.28 0.00 43.42 1.40
7793 9145 4.765195 AGGGTAATCCAATGCCCATAAT 57.235 40.909 3.28 0.00 43.42 1.28
7794 9146 5.671463 TTAGGGTAATCCAATGCCCATAA 57.329 39.130 3.28 0.00 43.42 1.90
7795 9147 5.671463 TTTAGGGTAATCCAATGCCCATA 57.329 39.130 3.28 0.00 43.42 2.74
7796 9148 4.551215 TTTAGGGTAATCCAATGCCCAT 57.449 40.909 3.28 0.00 43.42 4.00
7797 9149 4.017037 TCTTTTAGGGTAATCCAATGCCCA 60.017 41.667 3.28 0.00 43.42 5.36
7870 9225 4.036734 GTGAACTGTGCAATTTCTCTGGAA 59.963 41.667 0.00 0.00 0.00 3.53
7872 9227 3.316029 TGTGAACTGTGCAATTTCTCTGG 59.684 43.478 0.00 0.00 0.00 3.86
7887 9242 4.829492 AGGCTTCTTTTGCTATTGTGAACT 59.171 37.500 0.00 0.00 0.00 3.01
7888 9243 5.126396 AGGCTTCTTTTGCTATTGTGAAC 57.874 39.130 0.00 0.00 0.00 3.18
7998 9353 0.315886 TTTGTGCCTTCGCGTCTCTA 59.684 50.000 5.77 0.00 38.08 2.43
8043 9398 1.224069 GCATCTGAGTGTGTGCGTGT 61.224 55.000 0.00 0.00 0.00 4.49
8047 9410 0.236711 GTGTGCATCTGAGTGTGTGC 59.763 55.000 0.00 0.00 38.05 4.57
8055 9418 1.597195 GACGTGTTTGTGTGCATCTGA 59.403 47.619 0.00 0.00 0.00 3.27
8078 9441 6.040955 TCTCTCTATGTGTGGATATGTTCACC 59.959 42.308 0.00 0.00 33.29 4.02
8097 9460 4.439968 CATGTGTGCATGTATGTCTCTCT 58.560 43.478 0.00 0.00 45.48 3.10
8118 9481 1.518352 CGGCGCTAGTGTATGTGCA 60.518 57.895 7.64 0.00 40.98 4.57
8126 9489 1.520564 TATTGGTGCGGCGCTAGTG 60.521 57.895 33.26 0.00 0.00 2.74
8127 9490 1.520787 GTATTGGTGCGGCGCTAGT 60.521 57.895 33.26 17.40 0.00 2.57
8152 9515 2.702898 TGCATTATGTGTGTGTGCAC 57.297 45.000 10.75 10.75 45.44 4.57
8153 9516 1.952296 TGTGCATTATGTGTGTGTGCA 59.048 42.857 0.00 0.00 42.86 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.