Multiple sequence alignment - TraesCS2A01G080600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G080600 chr2A 100.000 3319 0 0 1 3319 36412786 36409468 0.000000e+00 6130.0
1 TraesCS2A01G080600 chr2A 91.194 1147 67 13 928 2048 36400210 36399072 0.000000e+00 1528.0
2 TraesCS2A01G080600 chr2A 87.184 1225 103 29 853 2034 36392813 36391600 0.000000e+00 1343.0
3 TraesCS2A01G080600 chr2A 83.040 796 92 25 859 1615 79342308 79343099 0.000000e+00 682.0
4 TraesCS2A01G080600 chr2A 82.759 696 75 15 931 1615 36190694 36190033 2.220000e-161 579.0
5 TraesCS2A01G080600 chr2A 89.024 164 17 1 3117 3280 36390303 36390465 5.610000e-48 202.0
6 TraesCS2A01G080600 chr2A 80.729 192 19 13 2087 2273 1212137 1212315 2.080000e-27 134.0
7 TraesCS2A01G080600 chr2A 88.462 104 8 1 2277 2376 36398864 36398761 4.500000e-24 122.0
8 TraesCS2A01G080600 chr2D 89.595 1480 79 26 928 2376 33581160 33579725 0.000000e+00 1810.0
9 TraesCS2A01G080600 chr2D 88.302 1154 90 16 928 2048 33242152 33241011 0.000000e+00 1341.0
10 TraesCS2A01G080600 chr2D 91.497 882 42 8 2227 3078 33372902 33372024 0.000000e+00 1182.0
11 TraesCS2A01G080600 chr2D 92.209 783 48 10 1240 2019 33373920 33373148 0.000000e+00 1096.0
12 TraesCS2A01G080600 chr2D 84.761 794 59 20 847 1598 33315548 33314775 0.000000e+00 739.0
13 TraesCS2A01G080600 chr2D 80.875 800 98 36 866 1615 79084882 79085676 2.220000e-161 579.0
14 TraesCS2A01G080600 chr2D 89.904 416 24 6 1628 2026 33314691 33314277 1.360000e-143 520.0
15 TraesCS2A01G080600 chr2D 86.383 470 47 14 2614 3077 33313703 33313245 6.390000e-137 497.0
16 TraesCS2A01G080600 chr2D 94.688 320 13 3 2761 3077 33239495 33239177 8.270000e-136 494.0
17 TraesCS2A01G080600 chr2D 86.782 348 37 6 2737 3077 33579245 33578900 2.420000e-101 379.0
18 TraesCS2A01G080600 chr2D 80.860 465 61 16 2547 3008 32991376 32990937 1.140000e-89 340.0
19 TraesCS2A01G080600 chr2D 79.710 483 77 17 2529 3008 79087055 79087519 2.470000e-86 329.0
20 TraesCS2A01G080600 chr2D 91.102 236 15 3 2087 2317 33240032 33239798 6.910000e-82 315.0
21 TraesCS2A01G080600 chr2D 90.187 214 20 1 2501 2714 33239705 33239493 9.070000e-71 278.0
22 TraesCS2A01G080600 chr2D 89.634 164 16 1 3117 3280 33313034 33313196 1.210000e-49 207.0
23 TraesCS2A01G080600 chr2D 90.278 144 5 3 3185 3319 33371902 33372045 2.630000e-41 180.0
24 TraesCS2A01G080600 chr2D 92.754 69 4 1 2083 2151 33314116 33314049 7.580000e-17 99.0
25 TraesCS2A01G080600 chr2D 93.750 64 4 0 2088 2151 33240842 33240779 2.730000e-16 97.1
26 TraesCS2A01G080600 chr2B 87.348 1233 90 29 855 2056 55227659 55226462 0.000000e+00 1352.0
27 TraesCS2A01G080600 chr2B 87.552 1205 88 28 849 2026 55210426 55209257 0.000000e+00 1338.0
28 TraesCS2A01G080600 chr2B 88.266 1142 66 20 897 2019 55699399 55698307 0.000000e+00 1304.0
29 TraesCS2A01G080600 chr2B 85.909 1171 91 35 928 2056 55855927 55854789 0.000000e+00 1181.0
30 TraesCS2A01G080600 chr2B 94.298 684 35 1 1 684 55701108 55700429 0.000000e+00 1044.0
31 TraesCS2A01G080600 chr2B 89.489 685 65 4 2 684 55538994 55538315 0.000000e+00 859.0
32 TraesCS2A01G080600 chr2B 91.325 634 45 8 2408 3036 55854445 55853817 0.000000e+00 857.0
33 TraesCS2A01G080600 chr2B 89.499 619 48 12 2427 3036 55226159 55225549 0.000000e+00 767.0
34 TraesCS2A01G080600 chr2B 87.988 641 53 10 1425 2048 55514206 55513573 0.000000e+00 736.0
35 TraesCS2A01G080600 chr2B 88.762 525 31 5 2087 2586 55207566 55207045 4.700000e-173 617.0
36 TraesCS2A01G080600 chr2B 80.586 819 102 38 849 1615 122992178 122992991 2.220000e-161 579.0
37 TraesCS2A01G080600 chr2B 86.188 543 61 7 2545 3077 55224727 55224189 2.870000e-160 575.0
38 TraesCS2A01G080600 chr2B 80.464 819 104 37 849 1615 122926373 122927187 2.870000e-160 575.0
39 TraesCS2A01G080600 chr2B 86.252 531 59 9 2545 3068 55697599 55697076 6.220000e-157 564.0
40 TraesCS2A01G080600 chr2B 91.019 412 29 5 2620 3027 55207041 55206634 1.740000e-152 549.0
41 TraesCS2A01G080600 chr2B 94.648 355 18 1 1 354 55217828 55217474 1.740000e-152 549.0
42 TraesCS2A01G080600 chr2B 85.794 535 54 11 2547 3077 55201959 55201443 6.260000e-152 547.0
43 TraesCS2A01G080600 chr2B 85.110 544 67 11 2547 3080 55512939 55512400 8.100000e-151 544.0
44 TraesCS2A01G080600 chr2B 90.050 402 27 4 1628 2024 55202857 55202464 2.950000e-140 508.0
45 TraesCS2A01G080600 chr2B 89.851 335 20 5 350 684 55211694 55211374 5.120000e-113 418.0
46 TraesCS2A01G080600 chr2B 89.492 295 18 6 2087 2376 55698174 55697888 8.750000e-96 361.0
47 TraesCS2A01G080600 chr2B 94.366 213 11 1 3108 3319 55206412 55206624 3.190000e-85 326.0
48 TraesCS2A01G080600 chr2B 82.514 366 37 11 864 1226 55032842 55032501 2.500000e-76 296.0
49 TraesCS2A01G080600 chr2B 91.429 140 11 1 847 985 55537325 55537186 1.220000e-44 191.0
50 TraesCS2A01G080600 chr2B 87.755 147 6 3 3185 3319 55853672 55853818 9.530000e-36 161.0
51 TraesCS2A01G080600 chr2B 93.750 96 5 1 2087 2182 55854687 55854593 3.450000e-30 143.0
52 TraesCS2A01G080600 chr2B 91.346 104 5 1 2277 2376 55513150 55513047 4.460000e-29 139.0
53 TraesCS2A01G080600 chr2B 90.385 104 6 1 2277 2376 55208841 55208738 2.080000e-27 134.0
54 TraesCS2A01G080600 chr2B 90.323 93 5 1 2288 2376 55202159 55202067 5.820000e-23 119.0
55 TraesCS2A01G080600 chr2B 96.667 60 2 0 2204 2263 55854599 55854540 2.110000e-17 100.0
56 TraesCS2A01G080600 chr2B 91.304 69 5 1 2083 2151 55202329 55202262 3.530000e-15 93.5
57 TraesCS2A01G080600 chr6B 83.765 425 63 5 2545 2967 718287769 718287349 6.670000e-107 398.0
58 TraesCS2A01G080600 chr4A 86.692 263 26 7 1628 1889 723918037 723917783 1.950000e-72 283.0
59 TraesCS2A01G080600 chr4A 86.957 138 15 3 693 829 76182196 76182061 5.730000e-33 152.0
60 TraesCS2A01G080600 chr6D 94.872 117 6 0 693 809 471313202 471313086 2.030000e-42 183.0
61 TraesCS2A01G080600 chr6D 81.538 130 14 9 2281 2403 30746756 30746882 7.580000e-17 99.0
62 TraesCS2A01G080600 chr3A 93.966 116 7 0 693 808 176250235 176250350 3.400000e-40 176.0
63 TraesCS2A01G080600 chr7D 93.220 118 8 0 693 810 232635112 232634995 1.220000e-39 174.0
64 TraesCS2A01G080600 chr7D 81.250 192 18 13 2087 2273 239730606 239730428 4.460000e-29 139.0
65 TraesCS2A01G080600 chr7D 83.099 142 10 9 2087 2214 190391996 190391855 2.090000e-22 117.0
66 TraesCS2A01G080600 chr3B 93.043 115 8 0 693 807 671461981 671462095 5.690000e-38 169.0
67 TraesCS2A01G080600 chr1D 91.803 122 9 1 690 811 355084185 355084065 5.690000e-38 169.0
68 TraesCS2A01G080600 chr1A 92.241 116 9 0 693 808 522971323 522971438 7.370000e-37 165.0
69 TraesCS2A01G080600 chr3D 92.174 115 9 0 693 807 422758675 422758789 2.650000e-36 163.0
70 TraesCS2A01G080600 chr7B 91.453 117 10 0 693 809 258591870 258591754 9.530000e-36 161.0
71 TraesCS2A01G080600 chr7A 74.760 416 68 26 2559 2948 689248820 689249224 5.730000e-33 152.0
72 TraesCS2A01G080600 chr5A 80.208 192 20 13 2087 2273 565537272 565537094 9.660000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G080600 chr2A 36409468 36412786 3318 True 6130.000000 6130 100.000000 1 3319 1 chr2A.!!$R3 3318
1 TraesCS2A01G080600 chr2A 36391600 36392813 1213 True 1343.000000 1343 87.184000 853 2034 1 chr2A.!!$R2 1181
2 TraesCS2A01G080600 chr2A 36398761 36400210 1449 True 825.000000 1528 89.828000 928 2376 2 chr2A.!!$R4 1448
3 TraesCS2A01G080600 chr2A 79342308 79343099 791 False 682.000000 682 83.040000 859 1615 1 chr2A.!!$F3 756
4 TraesCS2A01G080600 chr2A 36190033 36190694 661 True 579.000000 579 82.759000 931 1615 1 chr2A.!!$R1 684
5 TraesCS2A01G080600 chr2D 33372024 33373920 1896 True 1139.000000 1182 91.853000 1240 3078 2 chr2D.!!$R4 1838
6 TraesCS2A01G080600 chr2D 33578900 33581160 2260 True 1094.500000 1810 88.188500 928 3077 2 chr2D.!!$R5 2149
7 TraesCS2A01G080600 chr2D 33239177 33242152 2975 True 505.020000 1341 91.605800 928 3077 5 chr2D.!!$R2 2149
8 TraesCS2A01G080600 chr2D 33313245 33315548 2303 True 463.750000 739 88.450500 847 3077 4 chr2D.!!$R3 2230
9 TraesCS2A01G080600 chr2D 79084882 79087519 2637 False 454.000000 579 80.292500 866 3008 2 chr2D.!!$F3 2142
10 TraesCS2A01G080600 chr2B 55224189 55227659 3470 True 898.000000 1352 87.678333 855 3077 3 chr2B.!!$R4 2222
11 TraesCS2A01G080600 chr2B 55697076 55701108 4032 True 818.250000 1304 89.577000 1 3068 4 chr2B.!!$R7 3067
12 TraesCS2A01G080600 chr2B 122992178 122992991 813 False 579.000000 579 80.586000 849 1615 1 chr2B.!!$F4 766
13 TraesCS2A01G080600 chr2B 122926373 122927187 814 False 575.000000 575 80.464000 849 1615 1 chr2B.!!$F3 766
14 TraesCS2A01G080600 chr2B 55853817 55855927 2110 True 570.250000 1181 91.912750 928 3036 4 chr2B.!!$R8 2108
15 TraesCS2A01G080600 chr2B 55537186 55538994 1808 True 525.000000 859 90.459000 2 985 2 chr2B.!!$R6 983
16 TraesCS2A01G080600 chr2B 55201443 55211694 10251 True 480.388889 1338 89.448889 350 3077 9 chr2B.!!$R3 2727
17 TraesCS2A01G080600 chr2B 55512400 55514206 1806 True 473.000000 736 88.148000 1425 3080 3 chr2B.!!$R5 1655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 686 0.163788 CCGAGTGTGCACGAATGAAC 59.836 55.0 13.13 3.3 34.49 3.18 F
753 755 0.179076 ATGACATCGCTTGATCGCCA 60.179 50.0 0.00 0.0 0.00 5.69 F
1822 9971 0.036875 CAGTTCTGGTTCAGGGGGAC 59.963 60.0 0.00 0.0 31.51 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 9800 0.182537 CCGTATGGGGGATTCTGCAA 59.817 55.0 0.00 0.0 0.00 4.08 R
2304 12647 1.242076 ACAGCTCATGTGCAGAAACC 58.758 50.0 20.92 0.0 41.91 3.27 R
3297 14044 0.238289 GAGTGTGTTGCGTCCAATGG 59.762 55.0 0.00 0.0 32.75 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.813753 CGACCCCCAACATGCTACG 60.814 63.158 0.00 0.00 0.00 3.51
98 99 3.253921 TCGTCTTCCATAGTTCGTTGTCA 59.746 43.478 0.00 0.00 0.00 3.58
106 107 2.065993 AGTTCGTTGTCACAGGATCG 57.934 50.000 0.00 0.00 0.00 3.69
184 185 4.431378 TGATAGTTGTTTGACCTCCCCTA 58.569 43.478 0.00 0.00 0.00 3.53
186 187 5.491078 TGATAGTTGTTTGACCTCCCCTAAT 59.509 40.000 0.00 0.00 0.00 1.73
407 408 6.766467 GTGAAGGTAATATGGTTAGGGTGAAG 59.234 42.308 0.00 0.00 0.00 3.02
475 476 4.984161 CCACAAGCTTAAAAGTCACATTGG 59.016 41.667 0.00 0.00 0.00 3.16
481 482 7.759489 AGCTTAAAAGTCACATTGGTCAATA 57.241 32.000 0.00 0.00 0.00 1.90
488 489 7.707624 AAGTCACATTGGTCAATATGATTGT 57.292 32.000 7.75 0.00 36.71 2.71
514 515 7.559533 TCCTAAATTGCCAAATGTTATCAGCTA 59.440 33.333 0.00 0.00 0.00 3.32
515 516 7.649306 CCTAAATTGCCAAATGTTATCAGCTAC 59.351 37.037 0.00 0.00 0.00 3.58
518 519 4.257731 TGCCAAATGTTATCAGCTACGAA 58.742 39.130 0.00 0.00 0.00 3.85
519 520 4.697828 TGCCAAATGTTATCAGCTACGAAA 59.302 37.500 0.00 0.00 0.00 3.46
520 521 5.356751 TGCCAAATGTTATCAGCTACGAAAT 59.643 36.000 0.00 0.00 0.00 2.17
521 522 6.127758 TGCCAAATGTTATCAGCTACGAAATT 60.128 34.615 0.00 0.00 0.00 1.82
522 523 7.066404 TGCCAAATGTTATCAGCTACGAAATTA 59.934 33.333 0.00 0.00 0.00 1.40
527 528 7.724305 TGTTATCAGCTACGAAATTAATCCC 57.276 36.000 0.00 0.00 0.00 3.85
622 624 1.493022 TCCAGGTTAAGTGTGCTTGGT 59.507 47.619 0.00 0.00 36.22 3.67
684 686 0.163788 CCGAGTGTGCACGAATGAAC 59.836 55.000 13.13 3.30 34.49 3.18
685 687 0.163788 CGAGTGTGCACGAATGAACC 59.836 55.000 13.13 0.00 32.60 3.62
689 691 1.806542 GTGTGCACGAATGAACCTCAT 59.193 47.619 13.13 0.00 39.09 2.90
690 692 2.076100 TGTGCACGAATGAACCTCATC 58.924 47.619 13.13 0.00 35.76 2.92
692 694 2.349886 GTGCACGAATGAACCTCATCTC 59.650 50.000 0.00 0.00 35.76 2.75
695 697 3.599343 CACGAATGAACCTCATCTCCAA 58.401 45.455 0.00 0.00 35.76 3.53
697 699 4.455533 CACGAATGAACCTCATCTCCAAAA 59.544 41.667 0.00 0.00 35.76 2.44
698 700 4.455877 ACGAATGAACCTCATCTCCAAAAC 59.544 41.667 0.00 0.00 35.76 2.43
699 701 4.142600 CGAATGAACCTCATCTCCAAAACC 60.143 45.833 0.00 0.00 35.76 3.27
700 702 3.874383 TGAACCTCATCTCCAAAACCA 57.126 42.857 0.00 0.00 0.00 3.67
702 704 4.541705 TGAACCTCATCTCCAAAACCAAA 58.458 39.130 0.00 0.00 0.00 3.28
703 705 4.959210 TGAACCTCATCTCCAAAACCAAAA 59.041 37.500 0.00 0.00 0.00 2.44
704 706 5.423610 TGAACCTCATCTCCAAAACCAAAAA 59.576 36.000 0.00 0.00 0.00 1.94
705 707 5.276461 ACCTCATCTCCAAAACCAAAAAC 57.724 39.130 0.00 0.00 0.00 2.43
706 708 4.202111 ACCTCATCTCCAAAACCAAAAACG 60.202 41.667 0.00 0.00 0.00 3.60
707 709 3.712187 TCATCTCCAAAACCAAAAACGC 58.288 40.909 0.00 0.00 0.00 4.84
710 712 1.592543 CTCCAAAACCAAAAACGCTGC 59.407 47.619 0.00 0.00 0.00 5.25
711 713 1.066858 TCCAAAACCAAAAACGCTGCA 60.067 42.857 0.00 0.00 0.00 4.41
712 714 1.734465 CCAAAACCAAAAACGCTGCAA 59.266 42.857 0.00 0.00 0.00 4.08
713 715 2.160417 CCAAAACCAAAAACGCTGCAAA 59.840 40.909 0.00 0.00 0.00 3.68
714 716 3.159785 CAAAACCAAAAACGCTGCAAAC 58.840 40.909 0.00 0.00 0.00 2.93
715 717 2.086054 AACCAAAAACGCTGCAAACA 57.914 40.000 0.00 0.00 0.00 2.83
716 718 1.355005 ACCAAAAACGCTGCAAACAC 58.645 45.000 0.00 0.00 0.00 3.32
723 725 2.766970 ACGCTGCAAACACGTTAAAT 57.233 40.000 0.00 0.00 36.46 1.40
724 726 2.380660 ACGCTGCAAACACGTTAAATG 58.619 42.857 0.00 0.00 36.46 2.32
725 727 1.713404 CGCTGCAAACACGTTAAATGG 59.287 47.619 0.00 0.00 0.00 3.16
727 729 2.058057 CTGCAAACACGTTAAATGGGC 58.942 47.619 0.00 0.00 0.00 5.36
729 731 1.692296 CAAACACGTTAAATGGGCCG 58.308 50.000 0.00 0.00 0.00 6.13
730 732 0.599060 AAACACGTTAAATGGGCCGG 59.401 50.000 0.00 0.00 0.00 6.13
732 734 2.752640 ACGTTAAATGGGCCGGCC 60.753 61.111 38.57 38.57 0.00 6.13
744 746 4.552365 CCGGCCCATGACATCGCT 62.552 66.667 0.00 0.00 0.00 4.93
746 748 2.827051 CGGCCCATGACATCGCTTG 61.827 63.158 0.00 0.00 0.00 4.01
749 751 0.590195 GCCCATGACATCGCTTGATC 59.410 55.000 0.00 0.00 0.00 2.92
751 753 0.234106 CCATGACATCGCTTGATCGC 59.766 55.000 0.00 0.00 0.00 4.58
753 755 0.179076 ATGACATCGCTTGATCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
754 756 0.807275 TGACATCGCTTGATCGCCAG 60.807 55.000 0.00 0.00 0.00 4.85
755 757 1.493950 GACATCGCTTGATCGCCAGG 61.494 60.000 0.00 0.00 0.00 4.45
756 758 1.522355 CATCGCTTGATCGCCAGGT 60.522 57.895 0.00 0.00 0.00 4.00
758 760 1.680522 ATCGCTTGATCGCCAGGTCT 61.681 55.000 0.00 0.00 0.00 3.85
759 761 2.169789 CGCTTGATCGCCAGGTCTG 61.170 63.158 0.00 0.00 0.00 3.51
760 762 2.467826 GCTTGATCGCCAGGTCTGC 61.468 63.158 0.00 0.00 0.00 4.26
767 769 4.090057 GCCAGGTCTGCGCGAAAC 62.090 66.667 12.10 3.46 0.00 2.78
782 784 1.716192 CGAAACGGCGACACTTTTACG 60.716 52.381 16.62 5.74 0.00 3.18
789 791 2.192463 CGACACTTTTACGCAACGAG 57.808 50.000 0.00 0.00 0.00 4.18
790 792 1.717429 CGACACTTTTACGCAACGAGC 60.717 52.381 0.00 0.00 40.87 5.03
801 803 0.459585 GCAACGAGCGTCCAATAGGA 60.460 55.000 0.00 0.00 43.21 2.94
821 1633 2.850695 AATTCCGTCTCTCTACCCCT 57.149 50.000 0.00 0.00 0.00 4.79
1246 2244 1.608717 CGACAGCCCTTACCTGCTCT 61.609 60.000 0.00 0.00 35.12 4.09
1626 9709 2.094234 TCGGCGATTGAGTGAATTCTCA 60.094 45.455 4.99 0.00 41.85 3.27
1647 9770 4.630644 AAGCAGTTCTTGATCTCCTGAA 57.369 40.909 0.00 0.00 32.79 3.02
1648 9771 3.936564 AGCAGTTCTTGATCTCCTGAAC 58.063 45.455 0.00 3.80 39.06 3.18
1649 9772 3.326006 AGCAGTTCTTGATCTCCTGAACA 59.674 43.478 16.55 0.00 40.62 3.18
1650 9773 4.019501 AGCAGTTCTTGATCTCCTGAACAT 60.020 41.667 16.55 5.88 40.62 2.71
1651 9774 5.188555 AGCAGTTCTTGATCTCCTGAACATA 59.811 40.000 16.55 0.00 40.62 2.29
1652 9775 5.877012 GCAGTTCTTGATCTCCTGAACATAA 59.123 40.000 16.55 0.00 40.62 1.90
1653 9776 6.183360 GCAGTTCTTGATCTCCTGAACATAAC 60.183 42.308 16.55 0.00 40.62 1.89
1654 9777 6.314896 CAGTTCTTGATCTCCTGAACATAACC 59.685 42.308 16.55 0.00 40.62 2.85
1655 9778 6.013379 AGTTCTTGATCTCCTGAACATAACCA 60.013 38.462 16.55 0.00 40.62 3.67
1656 9779 6.566079 TCTTGATCTCCTGAACATAACCAT 57.434 37.500 0.00 0.00 0.00 3.55
1657 9780 6.351711 TCTTGATCTCCTGAACATAACCATG 58.648 40.000 0.00 0.00 38.21 3.66
1658 9781 5.955961 TGATCTCCTGAACATAACCATGA 57.044 39.130 0.00 0.00 35.96 3.07
1659 9782 6.505048 TGATCTCCTGAACATAACCATGAT 57.495 37.500 0.00 0.00 35.96 2.45
1660 9783 6.903516 TGATCTCCTGAACATAACCATGATT 58.096 36.000 0.00 0.00 35.96 2.57
1661 9784 7.348815 TGATCTCCTGAACATAACCATGATTT 58.651 34.615 0.00 0.00 35.96 2.17
1662 9785 7.283807 TGATCTCCTGAACATAACCATGATTTG 59.716 37.037 0.00 0.00 35.96 2.32
1671 9794 3.818586 CCATGATTTGGCTTTGCGT 57.181 47.368 0.00 0.00 39.09 5.24
1677 9800 5.122082 CCATGATTTGGCTTTGCGTTTTAAT 59.878 36.000 0.00 0.00 39.09 1.40
1822 9971 0.036875 CAGTTCTGGTTCAGGGGGAC 59.963 60.000 0.00 0.00 31.51 4.46
1880 10029 4.580551 GGCGCCGGCGTGTACTAT 62.581 66.667 45.02 0.00 41.24 2.12
2257 12581 8.642432 AGAGAAGATGGTGATAATCGTTTGATA 58.358 33.333 0.00 0.00 33.40 2.15
2283 12625 7.404671 AGCCCATTTTACTTACGAAATTCAT 57.595 32.000 0.00 0.00 0.00 2.57
2403 12860 9.823098 CAAGACTCTGAGATTTTAATTGTTCAG 57.177 33.333 12.44 0.00 34.76 3.02
2404 12861 9.784531 AAGACTCTGAGATTTTAATTGTTCAGA 57.215 29.630 12.44 2.48 38.84 3.27
2405 12862 9.784531 AGACTCTGAGATTTTAATTGTTCAGAA 57.215 29.630 12.44 0.00 40.12 3.02
2465 13049 1.132453 TCGTCGAGTGCTAACCTGATG 59.868 52.381 0.00 0.00 0.00 3.07
2478 13062 2.242043 ACCTGATGGTGCTTGGAAAAG 58.758 47.619 0.00 0.00 46.51 2.27
2493 13077 8.006564 TGCTTGGAAAAGGGATATTATGATTCT 58.993 33.333 0.00 0.00 0.00 2.40
2521 13144 9.629878 TTTGTTAGGAAACTGTTGTTATTAGGA 57.370 29.630 0.00 0.00 43.88 2.94
2524 13147 9.888878 GTTAGGAAACTGTTGTTATTAGGAAAC 57.111 33.333 0.00 0.00 43.88 2.78
2525 13148 9.856162 TTAGGAAACTGTTGTTATTAGGAAACT 57.144 29.630 0.00 0.00 43.88 2.66
2545 13235 7.764901 GGAAACTGAGGTAAAAGTAGTAGGATG 59.235 40.741 0.00 0.00 0.00 3.51
2777 13500 7.555914 TCCTTGCACATTATATTGCTTCAACTA 59.444 33.333 0.00 0.00 39.62 2.24
2926 13657 2.424956 GGGATCCTGAAAGTTCACATGC 59.575 50.000 12.58 0.00 32.90 4.06
3074 13821 1.835483 GCTGAGTGTGTTGCGTCCAG 61.835 60.000 0.00 0.00 0.00 3.86
3084 13831 2.434185 GCGTCCAGTGATGCGGAA 60.434 61.111 0.00 0.00 43.20 4.30
3085 13832 1.815421 GCGTCCAGTGATGCGGAAT 60.815 57.895 0.00 0.00 43.20 3.01
3086 13833 2.009108 CGTCCAGTGATGCGGAATG 58.991 57.895 0.00 0.00 31.67 2.67
3087 13834 1.723870 GTCCAGTGATGCGGAATGC 59.276 57.895 0.00 0.00 46.70 3.56
3097 13844 2.407268 GCGGAATGCATGATCCACA 58.593 52.632 16.01 0.00 45.45 4.17
3098 13845 0.740149 GCGGAATGCATGATCCACAA 59.260 50.000 16.01 0.00 45.45 3.33
3099 13846 1.134753 GCGGAATGCATGATCCACAAA 59.865 47.619 16.01 0.00 45.45 2.83
3100 13847 2.801063 CGGAATGCATGATCCACAAAC 58.199 47.619 16.01 0.00 35.34 2.93
3101 13848 2.164017 CGGAATGCATGATCCACAAACA 59.836 45.455 16.01 0.00 35.34 2.83
3102 13849 3.181484 CGGAATGCATGATCCACAAACAT 60.181 43.478 16.01 0.00 35.34 2.71
3103 13850 4.678574 CGGAATGCATGATCCACAAACATT 60.679 41.667 16.01 0.00 39.26 2.71
3104 13851 4.807304 GGAATGCATGATCCACAAACATTC 59.193 41.667 11.83 0.57 44.67 2.67
3105 13852 5.394883 GGAATGCATGATCCACAAACATTCT 60.395 40.000 11.83 0.00 44.72 2.40
3106 13853 4.443913 TGCATGATCCACAAACATTCTG 57.556 40.909 0.00 0.00 0.00 3.02
3107 13854 4.080687 TGCATGATCCACAAACATTCTGA 58.919 39.130 0.00 0.00 0.00 3.27
3108 13855 4.523558 TGCATGATCCACAAACATTCTGAA 59.476 37.500 0.00 0.00 0.00 3.02
3109 13856 5.010820 TGCATGATCCACAAACATTCTGAAA 59.989 36.000 0.00 0.00 0.00 2.69
3110 13857 6.103997 GCATGATCCACAAACATTCTGAAAT 58.896 36.000 0.00 0.00 0.00 2.17
3111 13858 6.035650 GCATGATCCACAAACATTCTGAAATG 59.964 38.462 0.00 0.00 46.42 2.32
3112 13859 5.472148 TGATCCACAAACATTCTGAAATGC 58.528 37.500 0.00 0.00 45.16 3.56
3113 13860 4.933505 TCCACAAACATTCTGAAATGCA 57.066 36.364 0.00 0.00 45.16 3.96
3114 13861 5.471556 TCCACAAACATTCTGAAATGCAT 57.528 34.783 0.00 0.00 45.16 3.96
3115 13862 6.587206 TCCACAAACATTCTGAAATGCATA 57.413 33.333 0.00 0.00 45.16 3.14
3116 13863 6.623486 TCCACAAACATTCTGAAATGCATAG 58.377 36.000 0.00 0.00 45.16 2.23
3117 13864 6.209192 TCCACAAACATTCTGAAATGCATAGT 59.791 34.615 0.00 0.00 45.16 2.12
3118 13865 6.529125 CCACAAACATTCTGAAATGCATAGTC 59.471 38.462 0.00 0.98 45.16 2.59
3119 13866 7.310664 CACAAACATTCTGAAATGCATAGTCT 58.689 34.615 0.00 0.00 45.16 3.24
3120 13867 8.453320 CACAAACATTCTGAAATGCATAGTCTA 58.547 33.333 0.00 0.00 45.16 2.59
3121 13868 9.013229 ACAAACATTCTGAAATGCATAGTCTAA 57.987 29.630 0.00 0.94 45.16 2.10
3122 13869 9.844790 CAAACATTCTGAAATGCATAGTCTAAA 57.155 29.630 0.00 0.63 45.16 1.85
3131 13878 9.304731 TGAAATGCATAGTCTAAAAATGAATGC 57.695 29.630 0.00 0.00 38.90 3.56
3134 13881 7.628769 TGCATAGTCTAAAAATGAATGCAGA 57.371 32.000 3.15 0.00 42.22 4.26
3135 13882 7.700505 TGCATAGTCTAAAAATGAATGCAGAG 58.299 34.615 3.15 0.00 42.22 3.35
3136 13883 6.636044 GCATAGTCTAAAAATGAATGCAGAGC 59.364 38.462 0.00 0.00 38.44 4.09
3137 13884 5.573337 AGTCTAAAAATGAATGCAGAGCC 57.427 39.130 0.00 0.00 0.00 4.70
3138 13885 5.012239 AGTCTAAAAATGAATGCAGAGCCA 58.988 37.500 0.00 0.00 0.00 4.75
3139 13886 5.655532 AGTCTAAAAATGAATGCAGAGCCAT 59.344 36.000 0.00 0.00 0.00 4.40
3140 13887 6.154021 AGTCTAAAAATGAATGCAGAGCCATT 59.846 34.615 0.00 0.00 38.09 3.16
3141 13888 7.340232 AGTCTAAAAATGAATGCAGAGCCATTA 59.660 33.333 0.00 0.00 35.67 1.90
3142 13889 7.975616 GTCTAAAAATGAATGCAGAGCCATTAA 59.024 33.333 0.00 0.00 35.67 1.40
3143 13890 6.973229 AAAAATGAATGCAGAGCCATTAAC 57.027 33.333 0.00 0.00 35.67 2.01
3144 13891 5.927281 AAATGAATGCAGAGCCATTAACT 57.073 34.783 0.00 0.00 35.67 2.24
3145 13892 7.408756 AAAATGAATGCAGAGCCATTAACTA 57.591 32.000 0.00 0.00 35.67 2.24
3146 13893 7.408756 AAATGAATGCAGAGCCATTAACTAA 57.591 32.000 0.00 0.00 35.67 2.24
3147 13894 7.592885 AATGAATGCAGAGCCATTAACTAAT 57.407 32.000 0.00 0.00 35.67 1.73
3148 13895 7.592885 ATGAATGCAGAGCCATTAACTAATT 57.407 32.000 0.00 0.00 35.67 1.40
3149 13896 6.798482 TGAATGCAGAGCCATTAACTAATTG 58.202 36.000 0.00 0.00 35.67 2.32
3150 13897 6.377996 TGAATGCAGAGCCATTAACTAATTGT 59.622 34.615 0.00 0.00 35.67 2.71
3151 13898 5.818136 TGCAGAGCCATTAACTAATTGTC 57.182 39.130 0.00 0.00 0.00 3.18
3152 13899 5.252547 TGCAGAGCCATTAACTAATTGTCA 58.747 37.500 0.00 0.00 0.00 3.58
3153 13900 5.709631 TGCAGAGCCATTAACTAATTGTCAA 59.290 36.000 0.00 0.00 0.00 3.18
3154 13901 6.208402 TGCAGAGCCATTAACTAATTGTCAAA 59.792 34.615 0.00 0.00 0.00 2.69
3155 13902 7.090173 GCAGAGCCATTAACTAATTGTCAAAA 58.910 34.615 0.00 0.00 0.00 2.44
3156 13903 7.062255 GCAGAGCCATTAACTAATTGTCAAAAC 59.938 37.037 0.00 0.00 0.00 2.43
3157 13904 7.542130 CAGAGCCATTAACTAATTGTCAAAACC 59.458 37.037 0.00 0.00 0.00 3.27
3158 13905 7.232534 AGAGCCATTAACTAATTGTCAAAACCA 59.767 33.333 0.00 0.00 0.00 3.67
3159 13906 7.151976 AGCCATTAACTAATTGTCAAAACCAC 58.848 34.615 0.00 0.00 0.00 4.16
3160 13907 7.015195 AGCCATTAACTAATTGTCAAAACCACT 59.985 33.333 0.00 0.00 0.00 4.00
3161 13908 7.116233 GCCATTAACTAATTGTCAAAACCACTG 59.884 37.037 0.00 0.00 0.00 3.66
3162 13909 7.116233 CCATTAACTAATTGTCAAAACCACTGC 59.884 37.037 0.00 0.00 0.00 4.40
3163 13910 5.590530 AACTAATTGTCAAAACCACTGCA 57.409 34.783 0.00 0.00 0.00 4.41
3164 13911 5.789643 ACTAATTGTCAAAACCACTGCAT 57.210 34.783 0.00 0.00 0.00 3.96
3165 13912 6.160576 ACTAATTGTCAAAACCACTGCATT 57.839 33.333 0.00 0.00 0.00 3.56
3166 13913 6.581712 ACTAATTGTCAAAACCACTGCATTT 58.418 32.000 0.00 0.00 0.00 2.32
3167 13914 7.047271 ACTAATTGTCAAAACCACTGCATTTT 58.953 30.769 0.00 0.00 0.00 1.82
3168 13915 5.989551 ATTGTCAAAACCACTGCATTTTC 57.010 34.783 0.00 0.00 0.00 2.29
3169 13916 3.791245 TGTCAAAACCACTGCATTTTCC 58.209 40.909 0.00 0.00 0.00 3.13
3170 13917 3.196469 TGTCAAAACCACTGCATTTTCCA 59.804 39.130 0.00 0.00 0.00 3.53
3171 13918 3.803778 GTCAAAACCACTGCATTTTCCAG 59.196 43.478 0.00 0.00 36.41 3.86
3172 13919 3.450457 TCAAAACCACTGCATTTTCCAGT 59.550 39.130 0.00 0.00 43.92 4.00
3178 13925 1.200716 ACTGCATTTTCCAGTGATGCG 59.799 47.619 9.27 7.18 46.90 4.73
3179 13926 0.527113 TGCATTTTCCAGTGATGCGG 59.473 50.000 9.27 0.00 46.90 5.69
3180 13927 0.810648 GCATTTTCCAGTGATGCGGA 59.189 50.000 0.00 0.00 37.09 5.54
3181 13928 1.202114 GCATTTTCCAGTGATGCGGAA 59.798 47.619 0.00 0.00 39.54 4.30
3182 13929 2.159198 GCATTTTCCAGTGATGCGGAAT 60.159 45.455 0.00 0.00 40.89 3.01
3183 13930 3.441163 CATTTTCCAGTGATGCGGAATG 58.559 45.455 0.00 0.00 40.89 2.67
3184 13931 0.810648 TTTCCAGTGATGCGGAATGC 59.189 50.000 0.00 0.00 40.89 3.56
3196 13943 3.969117 GCGGAATGCATGATCTACAAA 57.031 42.857 0.00 0.00 45.45 2.83
3197 13944 4.494350 GCGGAATGCATGATCTACAAAT 57.506 40.909 0.00 0.00 45.45 2.32
3198 13945 5.611796 GCGGAATGCATGATCTACAAATA 57.388 39.130 0.00 0.00 45.45 1.40
3199 13946 6.187125 GCGGAATGCATGATCTACAAATAT 57.813 37.500 0.00 0.00 45.45 1.28
3200 13947 6.253746 GCGGAATGCATGATCTACAAATATC 58.746 40.000 0.00 0.00 45.45 1.63
3201 13948 6.472680 CGGAATGCATGATCTACAAATATCG 58.527 40.000 0.00 0.00 0.00 2.92
3202 13949 6.253746 GGAATGCATGATCTACAAATATCGC 58.746 40.000 0.00 0.00 0.00 4.58
3203 13950 6.128200 GGAATGCATGATCTACAAATATCGCA 60.128 38.462 0.00 0.00 0.00 5.10
3204 13951 5.851047 TGCATGATCTACAAATATCGCAG 57.149 39.130 0.00 0.00 0.00 5.18
3205 13952 5.540911 TGCATGATCTACAAATATCGCAGA 58.459 37.500 0.00 0.00 45.75 4.26
3206 13953 5.990996 TGCATGATCTACAAATATCGCAGAA 59.009 36.000 0.00 0.00 43.58 3.02
3207 13954 6.652062 TGCATGATCTACAAATATCGCAGAAT 59.348 34.615 0.00 0.00 43.58 2.40
3208 13955 7.173735 TGCATGATCTACAAATATCGCAGAATT 59.826 33.333 0.00 0.00 43.58 2.17
3209 13956 7.480855 GCATGATCTACAAATATCGCAGAATTG 59.519 37.037 0.00 0.00 43.58 2.32
3210 13957 8.501580 CATGATCTACAAATATCGCAGAATTGT 58.498 33.333 0.00 0.00 43.58 2.71
3211 13958 8.076714 TGATCTACAAATATCGCAGAATTGTC 57.923 34.615 0.00 0.00 43.58 3.18
3212 13959 6.510746 TCTACAAATATCGCAGAATTGTCG 57.489 37.500 0.00 0.00 43.58 4.35
3213 13960 6.270064 TCTACAAATATCGCAGAATTGTCGA 58.730 36.000 0.00 0.00 43.58 4.20
3214 13961 5.143916 ACAAATATCGCAGAATTGTCGAC 57.856 39.130 9.11 9.11 43.58 4.20
3215 13962 4.870426 ACAAATATCGCAGAATTGTCGACT 59.130 37.500 17.92 0.00 43.58 4.18
3216 13963 5.005779 ACAAATATCGCAGAATTGTCGACTC 59.994 40.000 17.92 6.13 43.58 3.36
3217 13964 2.654749 ATCGCAGAATTGTCGACTCA 57.345 45.000 17.92 3.61 43.58 3.41
3218 13965 2.432206 TCGCAGAATTGTCGACTCAA 57.568 45.000 17.92 3.79 31.33 3.02
3219 13966 2.959516 TCGCAGAATTGTCGACTCAAT 58.040 42.857 17.92 6.27 39.35 2.57
3220 13967 2.667969 TCGCAGAATTGTCGACTCAATG 59.332 45.455 17.92 10.08 37.96 2.82
3221 13968 2.778659 GCAGAATTGTCGACTCAATGC 58.221 47.619 17.92 15.69 37.96 3.56
3222 13969 2.160219 GCAGAATTGTCGACTCAATGCA 59.840 45.455 17.92 0.00 37.96 3.96
3223 13970 3.365264 GCAGAATTGTCGACTCAATGCAA 60.365 43.478 17.92 0.56 37.96 4.08
3224 13971 4.673580 GCAGAATTGTCGACTCAATGCAAT 60.674 41.667 17.92 3.19 37.96 3.56
3225 13972 5.447683 GCAGAATTGTCGACTCAATGCAATA 60.448 40.000 17.92 0.00 37.96 1.90
3226 13973 6.545508 CAGAATTGTCGACTCAATGCAATAA 58.454 36.000 17.92 0.00 37.96 1.40
3227 13974 6.467047 CAGAATTGTCGACTCAATGCAATAAC 59.533 38.462 17.92 4.81 37.96 1.89
3228 13975 4.678509 TTGTCGACTCAATGCAATAACC 57.321 40.909 17.92 0.00 0.00 2.85
3229 13976 3.006940 TGTCGACTCAATGCAATAACCC 58.993 45.455 17.92 0.00 0.00 4.11
3230 13977 2.354821 GTCGACTCAATGCAATAACCCC 59.645 50.000 8.70 0.00 0.00 4.95
3231 13978 2.238646 TCGACTCAATGCAATAACCCCT 59.761 45.455 0.00 0.00 0.00 4.79
3232 13979 3.452990 TCGACTCAATGCAATAACCCCTA 59.547 43.478 0.00 0.00 0.00 3.53
3233 13980 3.560068 CGACTCAATGCAATAACCCCTAC 59.440 47.826 0.00 0.00 0.00 3.18
3234 13981 4.523083 GACTCAATGCAATAACCCCTACA 58.477 43.478 0.00 0.00 0.00 2.74
3235 13982 4.526970 ACTCAATGCAATAACCCCTACAG 58.473 43.478 0.00 0.00 0.00 2.74
3236 13983 4.018415 ACTCAATGCAATAACCCCTACAGT 60.018 41.667 0.00 0.00 0.00 3.55
3237 13984 4.269183 TCAATGCAATAACCCCTACAGTG 58.731 43.478 0.00 0.00 0.00 3.66
3238 13985 4.018870 TCAATGCAATAACCCCTACAGTGA 60.019 41.667 0.00 0.00 30.66 3.41
3239 13986 4.584638 ATGCAATAACCCCTACAGTGAA 57.415 40.909 0.00 0.00 0.00 3.18
3240 13987 4.374689 TGCAATAACCCCTACAGTGAAA 57.625 40.909 0.00 0.00 0.00 2.69
3241 13988 4.929479 TGCAATAACCCCTACAGTGAAAT 58.071 39.130 0.00 0.00 0.00 2.17
3242 13989 6.068461 TGCAATAACCCCTACAGTGAAATA 57.932 37.500 0.00 0.00 0.00 1.40
3243 13990 5.883673 TGCAATAACCCCTACAGTGAAATAC 59.116 40.000 0.00 0.00 0.00 1.89
3244 13991 6.120220 GCAATAACCCCTACAGTGAAATACT 58.880 40.000 0.00 0.00 41.36 2.12
3245 13992 6.602009 GCAATAACCCCTACAGTGAAATACTT 59.398 38.462 0.00 0.00 37.60 2.24
3246 13993 7.201705 GCAATAACCCCTACAGTGAAATACTTC 60.202 40.741 0.00 0.00 37.60 3.01
3247 13994 4.467198 ACCCCTACAGTGAAATACTTCG 57.533 45.455 0.00 0.00 37.60 3.79
3248 13995 3.836562 ACCCCTACAGTGAAATACTTCGT 59.163 43.478 0.00 0.00 37.60 3.85
3249 13996 4.081807 ACCCCTACAGTGAAATACTTCGTC 60.082 45.833 0.00 0.00 37.60 4.20
3250 13997 4.159879 CCCCTACAGTGAAATACTTCGTCT 59.840 45.833 0.00 0.00 37.60 4.18
3251 13998 5.359009 CCCCTACAGTGAAATACTTCGTCTA 59.641 44.000 0.00 0.00 37.60 2.59
3252 13999 6.040616 CCCCTACAGTGAAATACTTCGTCTAT 59.959 42.308 0.00 0.00 37.60 1.98
3253 14000 6.918569 CCCTACAGTGAAATACTTCGTCTATG 59.081 42.308 0.00 0.00 37.60 2.23
3254 14001 7.201794 CCCTACAGTGAAATACTTCGTCTATGA 60.202 40.741 0.00 0.00 37.60 2.15
3255 14002 8.188799 CCTACAGTGAAATACTTCGTCTATGAA 58.811 37.037 0.00 0.00 37.60 2.57
3263 14010 2.959516 CTTCGTCTATGAAGCACACCA 58.040 47.619 0.00 0.00 38.98 4.17
3264 14011 2.654749 TCGTCTATGAAGCACACCAG 57.345 50.000 0.00 0.00 0.00 4.00
3265 14012 2.167662 TCGTCTATGAAGCACACCAGA 58.832 47.619 0.00 0.00 0.00 3.86
3266 14013 2.560981 TCGTCTATGAAGCACACCAGAA 59.439 45.455 0.00 0.00 0.00 3.02
3267 14014 3.006430 TCGTCTATGAAGCACACCAGAAA 59.994 43.478 0.00 0.00 0.00 2.52
3268 14015 3.935203 CGTCTATGAAGCACACCAGAAAT 59.065 43.478 0.00 0.00 0.00 2.17
3269 14016 4.033358 CGTCTATGAAGCACACCAGAAATC 59.967 45.833 0.00 0.00 0.00 2.17
3270 14017 4.937620 GTCTATGAAGCACACCAGAAATCA 59.062 41.667 0.00 0.00 0.00 2.57
3271 14018 4.937620 TCTATGAAGCACACCAGAAATCAC 59.062 41.667 0.00 0.00 0.00 3.06
3272 14019 2.929641 TGAAGCACACCAGAAATCACA 58.070 42.857 0.00 0.00 0.00 3.58
3273 14020 3.489355 TGAAGCACACCAGAAATCACAT 58.511 40.909 0.00 0.00 0.00 3.21
3274 14021 3.503363 TGAAGCACACCAGAAATCACATC 59.497 43.478 0.00 0.00 0.00 3.06
3275 14022 3.430042 AGCACACCAGAAATCACATCT 57.570 42.857 0.00 0.00 0.00 2.90
3276 14023 3.341823 AGCACACCAGAAATCACATCTC 58.658 45.455 0.00 0.00 0.00 2.75
3277 14024 3.076621 GCACACCAGAAATCACATCTCA 58.923 45.455 0.00 0.00 0.00 3.27
3278 14025 3.126514 GCACACCAGAAATCACATCTCAG 59.873 47.826 0.00 0.00 0.00 3.35
3279 14026 4.572909 CACACCAGAAATCACATCTCAGA 58.427 43.478 0.00 0.00 0.00 3.27
3280 14027 4.999311 CACACCAGAAATCACATCTCAGAA 59.001 41.667 0.00 0.00 0.00 3.02
3281 14028 5.646793 CACACCAGAAATCACATCTCAGAAT 59.353 40.000 0.00 0.00 0.00 2.40
3282 14029 6.150641 CACACCAGAAATCACATCTCAGAATT 59.849 38.462 0.00 0.00 0.00 2.17
3283 14030 7.335171 CACACCAGAAATCACATCTCAGAATTA 59.665 37.037 0.00 0.00 0.00 1.40
3284 14031 7.335422 ACACCAGAAATCACATCTCAGAATTAC 59.665 37.037 0.00 0.00 0.00 1.89
3285 14032 7.335171 CACCAGAAATCACATCTCAGAATTACA 59.665 37.037 0.00 0.00 0.00 2.41
3286 14033 7.884877 ACCAGAAATCACATCTCAGAATTACAA 59.115 33.333 0.00 0.00 0.00 2.41
3287 14034 8.733458 CCAGAAATCACATCTCAGAATTACAAA 58.267 33.333 0.00 0.00 0.00 2.83
3294 14041 9.897744 TCACATCTCAGAATTACAAAATTGTTC 57.102 29.630 3.85 0.00 42.35 3.18
3295 14042 9.681692 CACATCTCAGAATTACAAAATTGTTCA 57.318 29.630 3.85 0.00 42.35 3.18
3296 14043 9.903682 ACATCTCAGAATTACAAAATTGTTCAG 57.096 29.630 3.85 0.00 42.35 3.02
3297 14044 8.857216 CATCTCAGAATTACAAAATTGTTCAGC 58.143 33.333 3.85 0.00 42.35 4.26
3298 14045 7.370383 TCTCAGAATTACAAAATTGTTCAGCC 58.630 34.615 3.85 0.00 42.35 4.85
3299 14046 7.014134 TCTCAGAATTACAAAATTGTTCAGCCA 59.986 33.333 3.85 0.00 42.35 4.75
3300 14047 7.669427 TCAGAATTACAAAATTGTTCAGCCAT 58.331 30.769 3.85 0.00 42.35 4.40
3301 14048 8.149647 TCAGAATTACAAAATTGTTCAGCCATT 58.850 29.630 3.85 0.00 42.35 3.16
3302 14049 8.225107 CAGAATTACAAAATTGTTCAGCCATTG 58.775 33.333 3.85 0.00 42.35 2.82
3303 14050 7.388500 AGAATTACAAAATTGTTCAGCCATTGG 59.612 33.333 3.85 0.00 42.35 3.16
3304 14051 4.686191 ACAAAATTGTTCAGCCATTGGA 57.314 36.364 6.95 0.00 38.47 3.53
3305 14052 4.379652 ACAAAATTGTTCAGCCATTGGAC 58.620 39.130 6.95 0.00 38.47 4.02
3306 14053 3.302365 AAATTGTTCAGCCATTGGACG 57.698 42.857 6.95 0.00 38.21 4.79
3307 14054 0.527565 ATTGTTCAGCCATTGGACGC 59.472 50.000 6.95 0.00 38.21 5.19
3308 14055 0.821301 TTGTTCAGCCATTGGACGCA 60.821 50.000 6.95 0.00 38.21 5.24
3309 14056 0.821301 TGTTCAGCCATTGGACGCAA 60.821 50.000 6.95 0.00 38.21 4.85
3310 14057 0.387239 GTTCAGCCATTGGACGCAAC 60.387 55.000 6.95 0.00 0.00 4.17
3311 14058 0.821301 TTCAGCCATTGGACGCAACA 60.821 50.000 6.95 0.00 0.00 3.33
3312 14059 1.081242 CAGCCATTGGACGCAACAC 60.081 57.895 6.95 0.00 0.00 3.32
3313 14060 1.528076 AGCCATTGGACGCAACACA 60.528 52.632 6.95 0.00 0.00 3.72
3314 14061 1.371635 GCCATTGGACGCAACACAC 60.372 57.895 6.95 0.00 0.00 3.82
3315 14062 1.795170 GCCATTGGACGCAACACACT 61.795 55.000 6.95 0.00 0.00 3.55
3316 14063 0.238289 CCATTGGACGCAACACACTC 59.762 55.000 0.00 0.00 0.00 3.51
3317 14064 0.943673 CATTGGACGCAACACACTCA 59.056 50.000 0.00 0.00 0.00 3.41
3318 14065 1.069703 CATTGGACGCAACACACTCAG 60.070 52.381 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.920734 TAGCATGTTGGGGGTCGCAT 61.921 55.000 0.00 0.00 0.00 4.73
38 39 1.218854 GTGGCAATGACATTGGGGC 59.781 57.895 25.64 15.51 40.57 5.80
113 114 7.039223 CCTTTATAGAAATTCTAGGGGAGCGTA 60.039 40.741 8.78 0.00 31.67 4.42
114 115 6.239629 CCTTTATAGAAATTCTAGGGGAGCGT 60.240 42.308 8.78 0.00 31.67 5.07
184 185 1.160137 GTCGGTTGAAGCAGCTGATT 58.840 50.000 18.77 18.77 32.99 2.57
186 187 1.301716 GGTCGGTTGAAGCAGCTGA 60.302 57.895 20.43 0.00 0.00 4.26
407 408 1.076485 TCGGTAGCCTACTGGGTCC 60.076 63.158 10.74 0.00 43.94 4.46
413 414 4.555610 CGTCCTCGGTAGCCTACT 57.444 61.111 1.24 0.00 0.00 2.57
475 476 7.715657 TGGCAATTTAGGACAATCATATTGAC 58.284 34.615 6.64 0.00 31.75 3.18
481 482 6.949715 ACATTTGGCAATTTAGGACAATCAT 58.050 32.000 0.00 0.00 32.32 2.45
488 489 6.380846 AGCTGATAACATTTGGCAATTTAGGA 59.619 34.615 0.00 0.00 0.00 2.94
514 515 9.689501 TTCCTATTAAGTTGGGATTAATTTCGT 57.310 29.630 0.00 0.00 35.17 3.85
622 624 3.591527 ACACATCCTCAAATTACCCCAGA 59.408 43.478 0.00 0.00 0.00 3.86
684 686 4.298332 CGTTTTTGGTTTTGGAGATGAGG 58.702 43.478 0.00 0.00 0.00 3.86
685 687 3.735746 GCGTTTTTGGTTTTGGAGATGAG 59.264 43.478 0.00 0.00 0.00 2.90
689 691 2.737039 GCAGCGTTTTTGGTTTTGGAGA 60.737 45.455 0.00 0.00 0.00 3.71
690 692 1.592543 GCAGCGTTTTTGGTTTTGGAG 59.407 47.619 0.00 0.00 0.00 3.86
692 694 1.363744 TGCAGCGTTTTTGGTTTTGG 58.636 45.000 0.00 0.00 0.00 3.28
695 697 2.158645 GTGTTTGCAGCGTTTTTGGTTT 59.841 40.909 0.00 0.00 0.00 3.27
697 699 1.355005 GTGTTTGCAGCGTTTTTGGT 58.645 45.000 0.00 0.00 0.00 3.67
698 700 0.297230 CGTGTTTGCAGCGTTTTTGG 59.703 50.000 0.00 0.00 0.00 3.28
699 701 0.988439 ACGTGTTTGCAGCGTTTTTG 59.012 45.000 0.00 0.00 35.11 2.44
700 702 1.704070 AACGTGTTTGCAGCGTTTTT 58.296 40.000 12.33 0.00 44.89 1.94
702 704 2.546195 TTAACGTGTTTGCAGCGTTT 57.454 40.000 19.55 9.03 44.89 3.60
704 706 2.380660 CATTTAACGTGTTTGCAGCGT 58.619 42.857 0.00 2.68 40.81 5.07
705 707 1.713404 CCATTTAACGTGTTTGCAGCG 59.287 47.619 0.00 0.00 0.00 5.18
706 708 2.058057 CCCATTTAACGTGTTTGCAGC 58.942 47.619 0.00 0.00 0.00 5.25
707 709 2.058057 GCCCATTTAACGTGTTTGCAG 58.942 47.619 0.00 0.00 0.00 4.41
710 712 1.667467 CCGGCCCATTTAACGTGTTTG 60.667 52.381 0.00 0.00 0.00 2.93
711 713 0.599060 CCGGCCCATTTAACGTGTTT 59.401 50.000 0.00 0.00 0.00 2.83
712 714 1.868987 GCCGGCCCATTTAACGTGTT 61.869 55.000 18.11 0.00 0.00 3.32
713 715 2.337246 GCCGGCCCATTTAACGTGT 61.337 57.895 18.11 0.00 0.00 4.49
714 716 2.487892 GCCGGCCCATTTAACGTG 59.512 61.111 18.11 0.00 0.00 4.49
715 717 2.752640 GGCCGGCCCATTTAACGT 60.753 61.111 36.64 0.00 0.00 3.99
727 729 4.552365 AGCGATGTCATGGGCCGG 62.552 66.667 0.00 0.00 0.00 6.13
729 731 0.820891 ATCAAGCGATGTCATGGGCC 60.821 55.000 0.00 0.00 0.00 5.80
730 732 0.590195 GATCAAGCGATGTCATGGGC 59.410 55.000 0.00 0.00 29.66 5.36
732 734 0.234106 GCGATCAAGCGATGTCATGG 59.766 55.000 0.00 0.00 29.66 3.66
733 735 0.234106 GGCGATCAAGCGATGTCATG 59.766 55.000 0.00 0.00 38.18 3.07
734 736 0.179076 TGGCGATCAAGCGATGTCAT 60.179 50.000 0.00 0.00 38.18 3.06
735 737 0.807275 CTGGCGATCAAGCGATGTCA 60.807 55.000 0.00 0.00 38.18 3.58
736 738 1.493950 CCTGGCGATCAAGCGATGTC 61.494 60.000 0.00 0.00 38.18 3.06
737 739 1.522355 CCTGGCGATCAAGCGATGT 60.522 57.895 0.00 0.00 38.18 3.06
738 740 1.493950 GACCTGGCGATCAAGCGATG 61.494 60.000 0.00 0.00 38.18 3.84
739 741 1.227380 GACCTGGCGATCAAGCGAT 60.227 57.895 0.00 0.00 38.18 4.58
740 742 2.184322 GACCTGGCGATCAAGCGA 59.816 61.111 0.00 0.00 38.18 4.93
741 743 2.169789 CAGACCTGGCGATCAAGCG 61.170 63.158 0.00 0.00 38.18 4.68
751 753 3.777925 CGTTTCGCGCAGACCTGG 61.778 66.667 8.75 0.00 0.00 4.45
761 763 0.232816 TAAAAGTGTCGCCGTTTCGC 59.767 50.000 0.00 0.00 0.00 4.70
762 764 1.716192 CGTAAAAGTGTCGCCGTTTCG 60.716 52.381 0.00 0.00 0.00 3.46
764 766 0.041926 GCGTAAAAGTGTCGCCGTTT 60.042 50.000 0.00 0.00 43.41 3.60
765 767 1.566077 GCGTAAAAGTGTCGCCGTT 59.434 52.632 0.00 0.00 43.41 4.44
766 768 3.237290 GCGTAAAAGTGTCGCCGT 58.763 55.556 0.00 0.00 43.41 5.68
771 773 1.933457 GCTCGTTGCGTAAAAGTGTC 58.067 50.000 0.00 0.00 0.00 3.67
782 784 0.459585 TCCTATTGGACGCTCGTTGC 60.460 55.000 0.00 0.00 37.46 4.17
783 785 2.004583 TTCCTATTGGACGCTCGTTG 57.995 50.000 0.00 0.00 43.06 4.10
784 786 2.754946 TTTCCTATTGGACGCTCGTT 57.245 45.000 0.00 0.00 43.06 3.85
785 787 2.981859 ATTTCCTATTGGACGCTCGT 57.018 45.000 0.00 0.00 43.06 4.18
787 789 2.544267 CGGAATTTCCTATTGGACGCTC 59.456 50.000 13.45 0.00 43.06 5.03
788 790 2.093128 ACGGAATTTCCTATTGGACGCT 60.093 45.455 13.45 0.00 43.06 5.07
789 791 2.285977 ACGGAATTTCCTATTGGACGC 58.714 47.619 13.45 0.00 43.06 5.19
790 792 3.793559 AGACGGAATTTCCTATTGGACG 58.206 45.455 13.45 0.00 43.06 4.79
791 793 5.024785 AGAGACGGAATTTCCTATTGGAC 57.975 43.478 13.45 0.00 43.06 4.02
793 795 5.283457 AGAGAGACGGAATTTCCTATTGG 57.717 43.478 13.45 0.23 33.30 3.16
794 796 6.217294 GGTAGAGAGACGGAATTTCCTATTG 58.783 44.000 13.45 0.59 33.30 1.90
795 797 5.304871 GGGTAGAGAGACGGAATTTCCTATT 59.695 44.000 13.45 0.00 33.30 1.73
796 798 4.833938 GGGTAGAGAGACGGAATTTCCTAT 59.166 45.833 13.45 1.51 33.30 2.57
798 800 3.032459 GGGTAGAGAGACGGAATTTCCT 58.968 50.000 13.45 0.90 33.30 3.36
799 801 2.102757 GGGGTAGAGAGACGGAATTTCC 59.897 54.545 5.28 5.28 0.00 3.13
801 803 3.032459 GAGGGGTAGAGAGACGGAATTT 58.968 50.000 0.00 0.00 0.00 1.82
802 804 2.245287 AGAGGGGTAGAGAGACGGAATT 59.755 50.000 0.00 0.00 0.00 2.17
804 806 1.296984 AGAGGGGTAGAGAGACGGAA 58.703 55.000 0.00 0.00 0.00 4.30
806 808 1.770061 AGTAGAGGGGTAGAGAGACGG 59.230 57.143 0.00 0.00 0.00 4.79
807 809 3.564053 AAGTAGAGGGGTAGAGAGACG 57.436 52.381 0.00 0.00 0.00 4.18
975 1877 2.815647 CCGGCGAGGAAAGCTGTC 60.816 66.667 9.30 0.00 45.00 3.51
1123 2050 3.755628 GTGGAGGTAGGTGCGCGA 61.756 66.667 12.10 0.00 0.00 5.87
1231 2229 0.547712 TGGAAGAGCAGGTAAGGGCT 60.548 55.000 0.00 0.00 44.48 5.19
1246 2244 4.752879 GTAGGCGGCGCTGTGGAA 62.753 66.667 32.30 8.00 0.00 3.53
1524 9258 2.284625 ATGTCCTCTGTGGCGGGA 60.285 61.111 0.00 0.00 35.26 5.14
1626 9709 4.202398 TGTTCAGGAGATCAAGAACTGCTT 60.202 41.667 15.64 0.00 40.62 3.91
1654 9777 5.588568 TTAAAACGCAAAGCCAAATCATG 57.411 34.783 0.00 0.00 0.00 3.07
1655 9778 6.601264 CAATTAAAACGCAAAGCCAAATCAT 58.399 32.000 0.00 0.00 0.00 2.45
1656 9779 5.559799 GCAATTAAAACGCAAAGCCAAATCA 60.560 36.000 0.00 0.00 0.00 2.57
1657 9780 4.845598 GCAATTAAAACGCAAAGCCAAATC 59.154 37.500 0.00 0.00 0.00 2.17
1658 9781 4.274459 TGCAATTAAAACGCAAAGCCAAAT 59.726 33.333 0.00 0.00 31.46 2.32
1659 9782 3.623060 TGCAATTAAAACGCAAAGCCAAA 59.377 34.783 0.00 0.00 31.46 3.28
1660 9783 3.198068 TGCAATTAAAACGCAAAGCCAA 58.802 36.364 0.00 0.00 31.46 4.52
1661 9784 2.799412 CTGCAATTAAAACGCAAAGCCA 59.201 40.909 0.00 0.00 34.75 4.75
1662 9785 3.056304 TCTGCAATTAAAACGCAAAGCC 58.944 40.909 0.00 0.00 34.75 4.35
1663 9786 4.707210 TTCTGCAATTAAAACGCAAAGC 57.293 36.364 0.00 0.00 34.75 3.51
1664 9787 5.163963 GGGATTCTGCAATTAAAACGCAAAG 60.164 40.000 0.00 0.00 34.75 2.77
1665 9788 4.688413 GGGATTCTGCAATTAAAACGCAAA 59.312 37.500 0.00 0.00 34.75 3.68
1666 9789 4.241681 GGGATTCTGCAATTAAAACGCAA 58.758 39.130 0.00 0.00 34.75 4.85
1667 9790 3.367910 GGGGATTCTGCAATTAAAACGCA 60.368 43.478 0.00 0.00 0.00 5.24
1668 9791 3.186909 GGGGATTCTGCAATTAAAACGC 58.813 45.455 0.00 0.00 0.00 4.84
1669 9792 3.194542 TGGGGGATTCTGCAATTAAAACG 59.805 43.478 0.00 0.00 0.00 3.60
1670 9793 4.817318 TGGGGGATTCTGCAATTAAAAC 57.183 40.909 0.00 0.00 0.00 2.43
1671 9794 5.068460 CGTATGGGGGATTCTGCAATTAAAA 59.932 40.000 0.00 0.00 0.00 1.52
1677 9800 0.182537 CCGTATGGGGGATTCTGCAA 59.817 55.000 0.00 0.00 0.00 4.08
1756 9905 2.968206 GGTAGTGCCCGTCGTCTT 59.032 61.111 0.00 0.00 0.00 3.01
1880 10029 2.186644 CACATGGCGATGTCCGGA 59.813 61.111 11.83 0.00 41.12 5.14
2182 11424 6.438186 ACTGATTTGGGGTTTCAAATTCAT 57.562 33.333 4.61 0.00 44.48 2.57
2187 11429 5.885449 ATCAACTGATTTGGGGTTTCAAA 57.115 34.783 0.00 0.00 40.37 2.69
2257 12581 8.514330 TGAATTTCGTAAGTAAAATGGGCTAT 57.486 30.769 0.00 0.00 39.48 2.97
2304 12647 1.242076 ACAGCTCATGTGCAGAAACC 58.758 50.000 20.92 0.00 41.91 3.27
2393 12850 7.279536 TGCAGCAAAAACATTTCTGAACAATTA 59.720 29.630 0.00 0.00 0.00 1.40
2403 12860 5.406767 TGTTCATGCAGCAAAAACATTTC 57.593 34.783 17.62 0.00 0.00 2.17
2404 12861 5.527951 TCATGTTCATGCAGCAAAAACATTT 59.472 32.000 25.30 12.19 38.21 2.32
2405 12862 5.057819 TCATGTTCATGCAGCAAAAACATT 58.942 33.333 25.30 14.36 38.21 2.71
2406 12863 4.633175 TCATGTTCATGCAGCAAAAACAT 58.367 34.783 23.45 23.45 40.25 2.71
2409 12866 7.148390 CCAAATATCATGTTCATGCAGCAAAAA 60.148 33.333 0.00 0.00 0.00 1.94
2465 13049 5.833131 TCATAATATCCCTTTTCCAAGCACC 59.167 40.000 0.00 0.00 0.00 5.01
2517 13140 8.172741 TCCTACTACTTTTACCTCAGTTTCCTA 58.827 37.037 0.00 0.00 0.00 2.94
2518 13141 7.015064 TCCTACTACTTTTACCTCAGTTTCCT 58.985 38.462 0.00 0.00 0.00 3.36
2519 13142 7.237209 TCCTACTACTTTTACCTCAGTTTCC 57.763 40.000 0.00 0.00 0.00 3.13
2521 13144 8.431910 TCATCCTACTACTTTTACCTCAGTTT 57.568 34.615 0.00 0.00 0.00 2.66
2524 13147 8.532819 AGTTTCATCCTACTACTTTTACCTCAG 58.467 37.037 0.00 0.00 0.00 3.35
2525 13148 8.431910 AGTTTCATCCTACTACTTTTACCTCA 57.568 34.615 0.00 0.00 0.00 3.86
2545 13235 5.239525 AGGACAGAAATGTGCAACTAGTTTC 59.760 40.000 5.07 1.04 38.04 2.78
2644 13364 4.081406 TGAAATGGGATGACTGAACTTGG 58.919 43.478 0.00 0.00 0.00 3.61
2926 13657 1.898574 AGGCAGCGAAACTTGTGGG 60.899 57.895 0.00 0.00 0.00 4.61
3061 13808 1.506309 GCATCACTGGACGCAACACA 61.506 55.000 0.00 0.00 31.24 3.72
3080 13827 2.164017 TGTTTGTGGATCATGCATTCCG 59.836 45.455 11.87 0.00 34.58 4.30
3081 13828 3.872511 TGTTTGTGGATCATGCATTCC 57.127 42.857 10.08 10.08 0.00 3.01
3082 13829 5.518847 CAGAATGTTTGTGGATCATGCATTC 59.481 40.000 0.00 0.00 41.78 2.67
3083 13830 5.186215 TCAGAATGTTTGTGGATCATGCATT 59.814 36.000 0.00 0.00 37.40 3.56
3084 13831 4.707934 TCAGAATGTTTGTGGATCATGCAT 59.292 37.500 0.00 0.00 37.40 3.96
3085 13832 4.080687 TCAGAATGTTTGTGGATCATGCA 58.919 39.130 0.00 0.00 37.40 3.96
3086 13833 4.707030 TCAGAATGTTTGTGGATCATGC 57.293 40.909 0.00 0.00 37.40 4.06
3087 13834 6.035650 GCATTTCAGAATGTTTGTGGATCATG 59.964 38.462 0.00 0.00 43.67 3.07
3088 13835 6.103997 GCATTTCAGAATGTTTGTGGATCAT 58.896 36.000 0.00 0.00 43.67 2.45
3089 13836 5.010820 TGCATTTCAGAATGTTTGTGGATCA 59.989 36.000 0.00 0.00 43.67 2.92
3090 13837 5.472148 TGCATTTCAGAATGTTTGTGGATC 58.528 37.500 1.63 0.00 43.67 3.36
3091 13838 5.471556 TGCATTTCAGAATGTTTGTGGAT 57.528 34.783 1.63 0.00 43.67 3.41
3092 13839 4.933505 TGCATTTCAGAATGTTTGTGGA 57.066 36.364 1.63 0.00 43.67 4.02
3093 13840 6.392354 ACTATGCATTTCAGAATGTTTGTGG 58.608 36.000 3.54 0.00 43.67 4.17
3094 13841 7.310664 AGACTATGCATTTCAGAATGTTTGTG 58.689 34.615 3.54 0.00 43.67 3.33
3095 13842 7.458409 AGACTATGCATTTCAGAATGTTTGT 57.542 32.000 3.54 0.00 43.67 2.83
3096 13843 9.844790 TTTAGACTATGCATTTCAGAATGTTTG 57.155 29.630 3.54 0.00 43.67 2.93
3105 13852 9.304731 GCATTCATTTTTAGACTATGCATTTCA 57.695 29.630 3.54 0.00 37.45 2.69
3106 13853 9.304731 TGCATTCATTTTTAGACTATGCATTTC 57.695 29.630 3.54 1.75 41.14 2.17
3107 13854 9.309516 CTGCATTCATTTTTAGACTATGCATTT 57.690 29.630 3.54 0.00 43.86 2.32
3108 13855 8.689061 TCTGCATTCATTTTTAGACTATGCATT 58.311 29.630 3.54 0.00 43.86 3.56
3109 13856 8.229253 TCTGCATTCATTTTTAGACTATGCAT 57.771 30.769 3.79 3.79 43.86 3.96
3110 13857 7.628769 TCTGCATTCATTTTTAGACTATGCA 57.371 32.000 0.00 0.00 43.03 3.96
3111 13858 6.636044 GCTCTGCATTCATTTTTAGACTATGC 59.364 38.462 0.00 0.00 37.87 3.14
3112 13859 7.137426 GGCTCTGCATTCATTTTTAGACTATG 58.863 38.462 0.00 0.00 0.00 2.23
3113 13860 6.830324 TGGCTCTGCATTCATTTTTAGACTAT 59.170 34.615 0.00 0.00 0.00 2.12
3114 13861 6.179756 TGGCTCTGCATTCATTTTTAGACTA 58.820 36.000 0.00 0.00 0.00 2.59
3115 13862 5.012239 TGGCTCTGCATTCATTTTTAGACT 58.988 37.500 0.00 0.00 0.00 3.24
3116 13863 5.314923 TGGCTCTGCATTCATTTTTAGAC 57.685 39.130 0.00 0.00 0.00 2.59
3117 13864 6.534475 AATGGCTCTGCATTCATTTTTAGA 57.466 33.333 0.00 0.00 0.00 2.10
3118 13865 7.977853 AGTTAATGGCTCTGCATTCATTTTTAG 59.022 33.333 8.50 0.00 32.81 1.85
3119 13866 7.839907 AGTTAATGGCTCTGCATTCATTTTTA 58.160 30.769 8.50 0.00 32.81 1.52
3120 13867 6.704310 AGTTAATGGCTCTGCATTCATTTTT 58.296 32.000 8.50 0.00 32.81 1.94
3121 13868 6.290294 AGTTAATGGCTCTGCATTCATTTT 57.710 33.333 8.50 0.00 32.81 1.82
3122 13869 5.927281 AGTTAATGGCTCTGCATTCATTT 57.073 34.783 8.50 0.00 32.81 2.32
3123 13870 7.592885 ATTAGTTAATGGCTCTGCATTCATT 57.407 32.000 0.00 0.00 34.65 2.57
3124 13871 7.069085 ACAATTAGTTAATGGCTCTGCATTCAT 59.931 33.333 0.00 0.00 0.00 2.57
3125 13872 6.377996 ACAATTAGTTAATGGCTCTGCATTCA 59.622 34.615 0.00 0.00 0.00 2.57
3126 13873 6.799512 ACAATTAGTTAATGGCTCTGCATTC 58.200 36.000 0.00 0.00 0.00 2.67
3127 13874 6.377996 TGACAATTAGTTAATGGCTCTGCATT 59.622 34.615 0.00 0.00 0.00 3.56
3128 13875 5.887598 TGACAATTAGTTAATGGCTCTGCAT 59.112 36.000 0.00 0.00 0.00 3.96
3129 13876 5.252547 TGACAATTAGTTAATGGCTCTGCA 58.747 37.500 0.00 0.00 0.00 4.41
3130 13877 5.818136 TGACAATTAGTTAATGGCTCTGC 57.182 39.130 0.00 0.00 0.00 4.26
3131 13878 7.542130 GGTTTTGACAATTAGTTAATGGCTCTG 59.458 37.037 0.00 0.00 0.00 3.35
3132 13879 7.232534 TGGTTTTGACAATTAGTTAATGGCTCT 59.767 33.333 0.00 0.00 0.00 4.09
3133 13880 7.328493 GTGGTTTTGACAATTAGTTAATGGCTC 59.672 37.037 0.00 0.00 0.00 4.70
3134 13881 7.015195 AGTGGTTTTGACAATTAGTTAATGGCT 59.985 33.333 0.00 0.00 0.00 4.75
3135 13882 7.116233 CAGTGGTTTTGACAATTAGTTAATGGC 59.884 37.037 0.00 0.00 0.00 4.40
3136 13883 7.116233 GCAGTGGTTTTGACAATTAGTTAATGG 59.884 37.037 0.00 0.00 0.00 3.16
3137 13884 7.651304 TGCAGTGGTTTTGACAATTAGTTAATG 59.349 33.333 0.00 0.00 0.00 1.90
3138 13885 7.721402 TGCAGTGGTTTTGACAATTAGTTAAT 58.279 30.769 0.00 0.00 0.00 1.40
3139 13886 7.101652 TGCAGTGGTTTTGACAATTAGTTAA 57.898 32.000 0.00 0.00 0.00 2.01
3140 13887 6.701145 TGCAGTGGTTTTGACAATTAGTTA 57.299 33.333 0.00 0.00 0.00 2.24
3141 13888 5.590530 TGCAGTGGTTTTGACAATTAGTT 57.409 34.783 0.00 0.00 0.00 2.24
3142 13889 5.789643 ATGCAGTGGTTTTGACAATTAGT 57.210 34.783 0.00 0.00 0.00 2.24
3143 13890 7.307337 GGAAAATGCAGTGGTTTTGACAATTAG 60.307 37.037 0.63 0.00 0.00 1.73
3144 13891 6.481644 GGAAAATGCAGTGGTTTTGACAATTA 59.518 34.615 0.63 0.00 0.00 1.40
3145 13892 5.296531 GGAAAATGCAGTGGTTTTGACAATT 59.703 36.000 0.63 0.00 0.00 2.32
3146 13893 4.815846 GGAAAATGCAGTGGTTTTGACAAT 59.184 37.500 0.63 0.00 0.00 2.71
3147 13894 4.187694 GGAAAATGCAGTGGTTTTGACAA 58.812 39.130 0.63 0.00 0.00 3.18
3148 13895 3.196469 TGGAAAATGCAGTGGTTTTGACA 59.804 39.130 0.63 0.00 0.00 3.58
3149 13896 3.791245 TGGAAAATGCAGTGGTTTTGAC 58.209 40.909 0.63 0.00 0.00 3.18
3150 13897 4.057406 CTGGAAAATGCAGTGGTTTTGA 57.943 40.909 0.63 0.00 30.66 2.69
3159 13906 1.468565 CCGCATCACTGGAAAATGCAG 60.469 52.381 7.27 0.00 44.71 4.41
3160 13907 0.527113 CCGCATCACTGGAAAATGCA 59.473 50.000 7.27 0.00 44.71 3.96
3161 13908 0.810648 TCCGCATCACTGGAAAATGC 59.189 50.000 0.00 0.00 41.82 3.56
3162 13909 3.441163 CATTCCGCATCACTGGAAAATG 58.559 45.455 0.00 0.00 46.65 2.32
3163 13910 2.159198 GCATTCCGCATCACTGGAAAAT 60.159 45.455 0.00 0.00 46.65 1.82
3164 13911 1.202114 GCATTCCGCATCACTGGAAAA 59.798 47.619 0.00 0.00 46.65 2.29
3165 13912 0.810648 GCATTCCGCATCACTGGAAA 59.189 50.000 0.00 0.00 46.65 3.13
3167 13914 4.223800 GCATTCCGCATCACTGGA 57.776 55.556 0.00 0.00 41.79 3.86
3176 13923 3.969117 TTTGTAGATCATGCATTCCGC 57.031 42.857 0.00 0.00 42.89 5.54
3177 13924 6.472680 CGATATTTGTAGATCATGCATTCCG 58.527 40.000 0.00 0.00 0.00 4.30
3178 13925 6.128200 TGCGATATTTGTAGATCATGCATTCC 60.128 38.462 0.00 0.00 0.00 3.01
3179 13926 6.834876 TGCGATATTTGTAGATCATGCATTC 58.165 36.000 0.00 0.00 0.00 2.67
3180 13927 6.652062 TCTGCGATATTTGTAGATCATGCATT 59.348 34.615 0.00 0.00 0.00 3.56
3181 13928 6.168389 TCTGCGATATTTGTAGATCATGCAT 58.832 36.000 0.00 0.00 0.00 3.96
3182 13929 5.540911 TCTGCGATATTTGTAGATCATGCA 58.459 37.500 0.00 0.00 0.00 3.96
3183 13930 6.471976 TTCTGCGATATTTGTAGATCATGC 57.528 37.500 0.00 0.00 0.00 4.06
3184 13931 8.501580 ACAATTCTGCGATATTTGTAGATCATG 58.498 33.333 0.00 0.00 0.00 3.07
3185 13932 8.613060 ACAATTCTGCGATATTTGTAGATCAT 57.387 30.769 0.00 0.00 0.00 2.45
3186 13933 7.096065 CGACAATTCTGCGATATTTGTAGATCA 60.096 37.037 0.00 0.00 31.09 2.92
3187 13934 7.114953 TCGACAATTCTGCGATATTTGTAGATC 59.885 37.037 0.00 0.00 30.46 2.75
3188 13935 6.923508 TCGACAATTCTGCGATATTTGTAGAT 59.076 34.615 0.00 0.00 30.46 1.98
3189 13936 6.198403 GTCGACAATTCTGCGATATTTGTAGA 59.802 38.462 11.55 0.00 34.94 2.59
3190 13937 6.199154 AGTCGACAATTCTGCGATATTTGTAG 59.801 38.462 19.50 0.00 34.94 2.74
3191 13938 6.040247 AGTCGACAATTCTGCGATATTTGTA 58.960 36.000 19.50 0.00 34.94 2.41
3192 13939 4.870426 AGTCGACAATTCTGCGATATTTGT 59.130 37.500 19.50 0.00 34.94 2.83
3193 13940 5.005682 TGAGTCGACAATTCTGCGATATTTG 59.994 40.000 19.50 0.00 34.94 2.32
3194 13941 5.109210 TGAGTCGACAATTCTGCGATATTT 58.891 37.500 19.50 0.00 34.94 1.40
3195 13942 4.682787 TGAGTCGACAATTCTGCGATATT 58.317 39.130 19.50 0.00 34.94 1.28
3196 13943 4.307443 TGAGTCGACAATTCTGCGATAT 57.693 40.909 19.50 0.00 34.94 1.63
3197 13944 3.775661 TGAGTCGACAATTCTGCGATA 57.224 42.857 19.50 0.00 34.94 2.92
3198 13945 2.654749 TGAGTCGACAATTCTGCGAT 57.345 45.000 19.50 0.00 34.94 4.58
3199 13946 2.432206 TTGAGTCGACAATTCTGCGA 57.568 45.000 19.50 0.00 0.00 5.10
3200 13947 2.785681 GCATTGAGTCGACAATTCTGCG 60.786 50.000 19.50 0.00 38.25 5.18
3201 13948 2.160219 TGCATTGAGTCGACAATTCTGC 59.840 45.455 19.50 18.34 38.25 4.26
3202 13949 4.408993 TTGCATTGAGTCGACAATTCTG 57.591 40.909 19.50 9.29 38.25 3.02
3203 13950 6.403636 GGTTATTGCATTGAGTCGACAATTCT 60.404 38.462 19.50 0.00 38.25 2.40
3204 13951 5.739161 GGTTATTGCATTGAGTCGACAATTC 59.261 40.000 19.50 7.36 38.25 2.17
3205 13952 5.393027 GGGTTATTGCATTGAGTCGACAATT 60.393 40.000 19.50 0.00 38.25 2.32
3206 13953 4.096382 GGGTTATTGCATTGAGTCGACAAT 59.904 41.667 19.50 6.89 40.50 2.71
3207 13954 3.438781 GGGTTATTGCATTGAGTCGACAA 59.561 43.478 19.50 4.43 0.00 3.18
3208 13955 3.006940 GGGTTATTGCATTGAGTCGACA 58.993 45.455 19.50 0.00 0.00 4.35
3209 13956 2.354821 GGGGTTATTGCATTGAGTCGAC 59.645 50.000 7.70 7.70 0.00 4.20
3210 13957 2.238646 AGGGGTTATTGCATTGAGTCGA 59.761 45.455 0.00 0.00 0.00 4.20
3211 13958 2.643551 AGGGGTTATTGCATTGAGTCG 58.356 47.619 0.00 0.00 0.00 4.18
3212 13959 4.523083 TGTAGGGGTTATTGCATTGAGTC 58.477 43.478 0.00 0.00 0.00 3.36
3213 13960 4.018415 ACTGTAGGGGTTATTGCATTGAGT 60.018 41.667 0.00 0.00 0.00 3.41
3214 13961 4.336433 CACTGTAGGGGTTATTGCATTGAG 59.664 45.833 0.00 0.00 0.00 3.02
3215 13962 4.018870 TCACTGTAGGGGTTATTGCATTGA 60.019 41.667 0.00 0.00 0.00 2.57
3216 13963 4.269183 TCACTGTAGGGGTTATTGCATTG 58.731 43.478 0.00 0.00 0.00 2.82
3217 13964 4.584638 TCACTGTAGGGGTTATTGCATT 57.415 40.909 0.00 0.00 0.00 3.56
3218 13965 4.584638 TTCACTGTAGGGGTTATTGCAT 57.415 40.909 0.00 0.00 0.00 3.96
3219 13966 4.374689 TTTCACTGTAGGGGTTATTGCA 57.625 40.909 0.00 0.00 0.00 4.08
3220 13967 6.120220 AGTATTTCACTGTAGGGGTTATTGC 58.880 40.000 0.00 0.00 35.62 3.56
3221 13968 7.011109 CGAAGTATTTCACTGTAGGGGTTATTG 59.989 40.741 0.00 0.00 37.63 1.90
3222 13969 7.046033 CGAAGTATTTCACTGTAGGGGTTATT 58.954 38.462 0.00 0.00 37.63 1.40
3223 13970 6.155737 ACGAAGTATTTCACTGTAGGGGTTAT 59.844 38.462 0.00 0.00 41.94 1.89
3224 13971 5.481473 ACGAAGTATTTCACTGTAGGGGTTA 59.519 40.000 0.00 0.00 41.94 2.85
3225 13972 4.285260 ACGAAGTATTTCACTGTAGGGGTT 59.715 41.667 0.00 0.00 41.94 4.11
3226 13973 3.836562 ACGAAGTATTTCACTGTAGGGGT 59.163 43.478 0.00 0.00 41.94 4.95
3227 13974 4.467198 ACGAAGTATTTCACTGTAGGGG 57.533 45.455 0.00 0.00 41.94 4.79
3243 13990 2.926200 CTGGTGTGCTTCATAGACGAAG 59.074 50.000 0.00 0.00 44.37 3.79
3244 13991 2.560981 TCTGGTGTGCTTCATAGACGAA 59.439 45.455 0.00 0.00 0.00 3.85
3245 13992 2.167662 TCTGGTGTGCTTCATAGACGA 58.832 47.619 0.00 0.00 0.00 4.20
3246 13993 2.654749 TCTGGTGTGCTTCATAGACG 57.345 50.000 0.00 0.00 0.00 4.18
3247 13994 4.937620 TGATTTCTGGTGTGCTTCATAGAC 59.062 41.667 0.00 0.00 0.00 2.59
3248 13995 4.937620 GTGATTTCTGGTGTGCTTCATAGA 59.062 41.667 0.00 0.00 0.00 1.98
3249 13996 4.696877 TGTGATTTCTGGTGTGCTTCATAG 59.303 41.667 0.00 0.00 0.00 2.23
3250 13997 4.650734 TGTGATTTCTGGTGTGCTTCATA 58.349 39.130 0.00 0.00 0.00 2.15
3251 13998 3.489355 TGTGATTTCTGGTGTGCTTCAT 58.511 40.909 0.00 0.00 0.00 2.57
3252 13999 2.929641 TGTGATTTCTGGTGTGCTTCA 58.070 42.857 0.00 0.00 0.00 3.02
3253 14000 3.755378 AGATGTGATTTCTGGTGTGCTTC 59.245 43.478 0.00 0.00 0.00 3.86
3254 14001 3.755378 GAGATGTGATTTCTGGTGTGCTT 59.245 43.478 0.00 0.00 0.00 3.91
3255 14002 3.244665 TGAGATGTGATTTCTGGTGTGCT 60.245 43.478 0.00 0.00 0.00 4.40
3256 14003 3.076621 TGAGATGTGATTTCTGGTGTGC 58.923 45.455 0.00 0.00 0.00 4.57
3257 14004 4.572909 TCTGAGATGTGATTTCTGGTGTG 58.427 43.478 0.00 0.00 0.00 3.82
3258 14005 4.897509 TCTGAGATGTGATTTCTGGTGT 57.102 40.909 0.00 0.00 0.00 4.16
3259 14006 6.754702 AATTCTGAGATGTGATTTCTGGTG 57.245 37.500 0.00 0.00 0.00 4.17
3260 14007 7.397221 TGTAATTCTGAGATGTGATTTCTGGT 58.603 34.615 0.00 0.00 0.00 4.00
3261 14008 7.854557 TGTAATTCTGAGATGTGATTTCTGG 57.145 36.000 0.00 0.00 0.00 3.86
3268 14015 9.897744 GAACAATTTTGTAATTCTGAGATGTGA 57.102 29.630 0.00 0.00 41.31 3.58
3269 14016 9.681692 TGAACAATTTTGTAATTCTGAGATGTG 57.318 29.630 0.00 0.00 41.31 3.21
3270 14017 9.903682 CTGAACAATTTTGTAATTCTGAGATGT 57.096 29.630 0.00 0.00 41.31 3.06
3271 14018 8.857216 GCTGAACAATTTTGTAATTCTGAGATG 58.143 33.333 0.00 0.00 41.31 2.90
3272 14019 8.031277 GGCTGAACAATTTTGTAATTCTGAGAT 58.969 33.333 0.00 0.00 41.31 2.75
3273 14020 7.014134 TGGCTGAACAATTTTGTAATTCTGAGA 59.986 33.333 0.00 0.00 41.31 3.27
3274 14021 7.147312 TGGCTGAACAATTTTGTAATTCTGAG 58.853 34.615 0.00 0.00 41.31 3.35
3275 14022 7.048629 TGGCTGAACAATTTTGTAATTCTGA 57.951 32.000 0.00 0.00 41.31 3.27
3276 14023 7.894376 ATGGCTGAACAATTTTGTAATTCTG 57.106 32.000 0.00 0.00 41.31 3.02
3277 14024 7.388500 CCAATGGCTGAACAATTTTGTAATTCT 59.612 33.333 0.00 0.00 41.31 2.40
3278 14025 7.387397 TCCAATGGCTGAACAATTTTGTAATTC 59.613 33.333 0.00 0.00 41.31 2.17
3279 14026 7.173047 GTCCAATGGCTGAACAATTTTGTAATT 59.827 33.333 0.00 0.00 41.31 1.40
3280 14027 6.650390 GTCCAATGGCTGAACAATTTTGTAAT 59.350 34.615 0.00 0.00 41.31 1.89
3281 14028 5.988561 GTCCAATGGCTGAACAATTTTGTAA 59.011 36.000 0.00 0.00 41.31 2.41
3282 14029 5.537188 GTCCAATGGCTGAACAATTTTGTA 58.463 37.500 0.00 0.00 41.31 2.41
3283 14030 4.379652 GTCCAATGGCTGAACAATTTTGT 58.620 39.130 0.00 0.00 44.72 2.83
3284 14031 3.429543 CGTCCAATGGCTGAACAATTTTG 59.570 43.478 0.00 0.00 0.00 2.44
3285 14032 3.652274 CGTCCAATGGCTGAACAATTTT 58.348 40.909 0.00 0.00 0.00 1.82
3286 14033 2.610232 GCGTCCAATGGCTGAACAATTT 60.610 45.455 0.00 0.00 0.00 1.82
3287 14034 1.067635 GCGTCCAATGGCTGAACAATT 60.068 47.619 0.00 0.00 0.00 2.32
3288 14035 0.527565 GCGTCCAATGGCTGAACAAT 59.472 50.000 0.00 0.00 0.00 2.71
3289 14036 0.821301 TGCGTCCAATGGCTGAACAA 60.821 50.000 0.00 0.00 0.00 2.83
3290 14037 0.821301 TTGCGTCCAATGGCTGAACA 60.821 50.000 0.00 0.00 0.00 3.18
3291 14038 0.387239 GTTGCGTCCAATGGCTGAAC 60.387 55.000 0.00 0.00 32.75 3.18
3292 14039 0.821301 TGTTGCGTCCAATGGCTGAA 60.821 50.000 0.00 0.00 32.75 3.02
3293 14040 1.228094 TGTTGCGTCCAATGGCTGA 60.228 52.632 0.00 0.00 32.75 4.26
3294 14041 1.081242 GTGTTGCGTCCAATGGCTG 60.081 57.895 0.00 0.00 32.75 4.85
3295 14042 1.528076 TGTGTTGCGTCCAATGGCT 60.528 52.632 0.00 0.00 32.75 4.75
3296 14043 1.371635 GTGTGTTGCGTCCAATGGC 60.372 57.895 0.00 0.00 32.75 4.40
3297 14044 0.238289 GAGTGTGTTGCGTCCAATGG 59.762 55.000 0.00 0.00 32.75 3.16
3298 14045 0.943673 TGAGTGTGTTGCGTCCAATG 59.056 50.000 0.00 0.00 32.75 2.82
3299 14046 1.229428 CTGAGTGTGTTGCGTCCAAT 58.771 50.000 0.00 0.00 32.75 3.16
3300 14047 2.689083 CTGAGTGTGTTGCGTCCAA 58.311 52.632 0.00 0.00 0.00 3.53
3301 14048 4.436515 CTGAGTGTGTTGCGTCCA 57.563 55.556 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.