Multiple sequence alignment - TraesCS2A01G080400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G080400 chr2A 100.000 6652 0 0 1 6652 36382433 36389084 0.000000e+00 12285.0
1 TraesCS2A01G080400 chr2A 82.853 1942 302 19 1782 3700 585927829 585925896 0.000000e+00 1712.0
2 TraesCS2A01G080400 chr2A 85.809 902 100 15 1405 2287 36408575 36409467 0.000000e+00 931.0
3 TraesCS2A01G080400 chr2A 86.239 109 14 1 5989 6097 14695319 14695212 4.210000e-22 117.0
4 TraesCS2A01G080400 chr2A 80.741 135 20 2 5989 6123 20475891 20476019 4.240000e-17 100.0
5 TraesCS2A01G080400 chr2A 92.063 63 4 1 5666 5728 20411974 20412035 3.300000e-13 87.9
6 TraesCS2A01G080400 chr2A 100.000 28 0 0 1404 1431 778911514 778911487 1.200000e-02 52.8
7 TraesCS2A01G080400 chr2D 92.488 4220 216 41 255 4450 33306344 33310486 0.000000e+00 5943.0
8 TraesCS2A01G080400 chr2D 92.068 4211 255 31 263 4450 33226904 33231058 0.000000e+00 5853.0
9 TraesCS2A01G080400 chr2D 86.443 2058 255 14 1658 3698 33364968 33367018 0.000000e+00 2233.0
10 TraesCS2A01G080400 chr2D 82.171 2008 316 22 1720 3700 442441823 442439831 0.000000e+00 1687.0
11 TraesCS2A01G080400 chr2D 86.441 1416 161 20 1405 2797 33561858 33563265 0.000000e+00 1522.0
12 TraesCS2A01G080400 chr2D 86.229 1416 164 21 1405 2797 33575658 33577065 0.000000e+00 1506.0
13 TraesCS2A01G080400 chr2D 86.988 684 43 18 5993 6652 33237845 33238506 0.000000e+00 728.0
14 TraesCS2A01G080400 chr2D 83.465 762 109 11 3700 4450 33577074 33577829 0.000000e+00 693.0
15 TraesCS2A01G080400 chr2D 83.202 762 111 11 3700 4450 33563274 33564029 0.000000e+00 682.0
16 TraesCS2A01G080400 chr2D 82.896 801 69 35 4449 5213 33231116 33231884 0.000000e+00 658.0
17 TraesCS2A01G080400 chr2D 90.750 400 31 5 5337 5731 33232079 33232477 4.570000e-146 529.0
18 TraesCS2A01G080400 chr2D 96.333 300 10 1 4449 4748 33310544 33310842 5.990000e-135 492.0
19 TraesCS2A01G080400 chr2D 86.154 260 22 7 4438 4696 33577879 33578125 1.100000e-67 268.0
20 TraesCS2A01G080400 chr2D 85.714 210 28 2 1 210 33226700 33226907 3.120000e-53 220.0
21 TraesCS2A01G080400 chr2D 88.889 171 18 1 1 171 33306176 33306345 6.760000e-50 209.0
22 TraesCS2A01G080400 chr2D 82.394 142 19 2 5989 6130 19569436 19569571 1.170000e-22 119.0
23 TraesCS2A01G080400 chr2D 92.647 68 4 1 6386 6452 33311340 33311407 5.490000e-16 97.1
24 TraesCS2A01G080400 chr2D 89.333 75 7 1 5655 5729 19569136 19569209 7.100000e-15 93.5
25 TraesCS2A01G080400 chr2D 91.176 68 6 0 4776 4843 33231412 33231479 7.100000e-15 93.5
26 TraesCS2A01G080400 chr2B 94.437 3793 184 14 672 4450 55176828 55180607 0.000000e+00 5810.0
27 TraesCS2A01G080400 chr2B 82.659 2001 316 18 1720 3700 521978242 521976253 0.000000e+00 1744.0
28 TraesCS2A01G080400 chr2B 82.888 748 110 14 3700 4436 55691824 55692564 0.000000e+00 656.0
29 TraesCS2A01G080400 chr2B 83.954 698 52 16 5979 6652 55182685 55183346 1.230000e-171 614.0
30 TraesCS2A01G080400 chr2B 91.457 398 28 3 5337 5729 55181640 55182036 5.870000e-150 542.0
31 TraesCS2A01G080400 chr2B 93.831 308 17 2 4449 4756 55180665 55180970 4.700000e-126 462.0
32 TraesCS2A01G080400 chr2B 84.178 493 43 14 4734 5213 55180981 55181451 4.730000e-121 446.0
33 TraesCS2A01G080400 chr2B 84.953 319 42 4 252 568 55176476 55176790 1.080000e-82 318.0
34 TraesCS2A01G080400 chr2B 88.158 152 18 0 4449 4600 55692646 55692797 1.470000e-41 182.0
35 TraesCS2A01G080400 chr2B 88.136 118 13 1 86 203 55176367 55176483 8.990000e-29 139.0
36 TraesCS2A01G080400 chr2B 94.340 53 2 1 5215 5267 55181503 55181554 5.530000e-11 80.5
37 TraesCS2A01G080400 chr6D 86.475 695 94 0 3003 3697 131705472 131704778 0.000000e+00 763.0
38 TraesCS2A01G080400 chr6D 83.239 710 108 7 3730 4430 131704595 131703888 5.620000e-180 641.0
39 TraesCS2A01G080400 chr6D 95.098 102 4 1 5881 5982 165329439 165329539 6.900000e-35 159.0
40 TraesCS2A01G080400 chr6A 86.351 696 93 2 3003 3697 170521990 170521296 0.000000e+00 758.0
41 TraesCS2A01G080400 chr6A 82.817 710 111 7 3730 4430 170521113 170520406 5.660000e-175 625.0
42 TraesCS2A01G080400 chr6A 94.286 105 3 1 5881 5982 615559722 615559826 2.480000e-34 158.0
43 TraesCS2A01G080400 chr6B 86.043 695 97 0 3003 3697 229280041 229279347 0.000000e+00 747.0
44 TraesCS2A01G080400 chr6B 83.122 711 107 8 3730 4430 229279164 229278457 2.620000e-178 636.0
45 TraesCS2A01G080400 chr3A 97.115 104 1 1 5881 5982 715984185 715984288 2.470000e-39 174.0
46 TraesCS2A01G080400 chr3A 96.970 99 1 1 5881 5977 726083967 726083869 1.480000e-36 165.0
47 TraesCS2A01G080400 chr3A 96.429 56 1 1 4700 4754 8868319 8868264 2.550000e-14 91.6
48 TraesCS2A01G080400 chr7D 97.059 102 2 1 5881 5981 591051045 591050944 3.190000e-38 171.0
49 TraesCS2A01G080400 chr7D 95.238 105 2 2 5881 5982 119016474 119016370 5.340000e-36 163.0
50 TraesCS2A01G080400 chr7A 95.283 106 2 2 5881 5983 546426726 546426831 1.480000e-36 165.0
51 TraesCS2A01G080400 chr7A 93.458 107 2 4 5872 5975 39247191 39247295 3.210000e-33 154.0
52 TraesCS2A01G080400 chr5A 95.192 104 3 1 5881 5982 519505620 519505723 5.340000e-36 163.0
53 TraesCS2A01G080400 chr5A 82.353 85 9 4 1584 1667 654097732 654097653 1.200000e-07 69.4
54 TraesCS2A01G080400 chr5A 100.000 35 0 0 1936 1970 582622947 582622981 1.550000e-06 65.8
55 TraesCS2A01G080400 chr5A 90.476 42 3 1 1627 1667 657765148 657765189 3.000000e-03 54.7
56 TraesCS2A01G080400 chr3D 81.379 145 18 4 5989 6133 589661126 589660991 7.050000e-20 110.0
57 TraesCS2A01G080400 chr3D 88.000 75 6 3 5655 5729 589661373 589661302 1.190000e-12 86.1
58 TraesCS2A01G080400 chr5B 96.552 58 1 1 4700 4756 208438140 208438083 1.970000e-15 95.3
59 TraesCS2A01G080400 chr1D 96.491 57 1 1 4700 4755 321674955 321674899 7.100000e-15 93.5
60 TraesCS2A01G080400 chr1A 98.077 52 1 0 4703 4754 24753704 24753755 2.550000e-14 91.6
61 TraesCS2A01G080400 chr3B 94.828 58 2 1 4700 4756 715889470 715889413 9.190000e-14 89.8
62 TraesCS2A01G080400 chr1B 94.828 58 2 1 4700 4756 434088883 434088940 9.190000e-14 89.8
63 TraesCS2A01G080400 chr5D 83.721 86 8 4 5472 5552 425035945 425035861 7.150000e-10 76.8
64 TraesCS2A01G080400 chr4A 89.130 46 5 0 5463 5508 581958285 581958330 2.590000e-04 58.4
65 TraesCS2A01G080400 chr4D 100.000 28 0 0 5475 5502 19006574 19006547 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G080400 chr2A 36382433 36389084 6651 False 12285.000000 12285 100.000000 1 6652 1 chr2A.!!$F3 6651
1 TraesCS2A01G080400 chr2A 585925896 585927829 1933 True 1712.000000 1712 82.853000 1782 3700 1 chr2A.!!$R2 1918
2 TraesCS2A01G080400 chr2A 36408575 36409467 892 False 931.000000 931 85.809000 1405 2287 1 chr2A.!!$F4 882
3 TraesCS2A01G080400 chr2D 33364968 33367018 2050 False 2233.000000 2233 86.443000 1658 3698 1 chr2D.!!$F2 2040
4 TraesCS2A01G080400 chr2D 442439831 442441823 1992 True 1687.000000 1687 82.171000 1720 3700 1 chr2D.!!$R1 1980
5 TraesCS2A01G080400 chr2D 33306176 33311407 5231 False 1685.275000 5943 92.589250 1 6452 4 chr2D.!!$F5 6451
6 TraesCS2A01G080400 chr2D 33226700 33232477 5777 False 1470.700000 5853 88.520800 1 5731 5 chr2D.!!$F4 5730
7 TraesCS2A01G080400 chr2D 33561858 33564029 2171 False 1102.000000 1522 84.821500 1405 4450 2 chr2D.!!$F6 3045
8 TraesCS2A01G080400 chr2D 33575658 33578125 2467 False 822.333333 1506 85.282667 1405 4696 3 chr2D.!!$F7 3291
9 TraesCS2A01G080400 chr2D 33237845 33238506 661 False 728.000000 728 86.988000 5993 6652 1 chr2D.!!$F1 659
10 TraesCS2A01G080400 chr2B 521976253 521978242 1989 True 1744.000000 1744 82.659000 1720 3700 1 chr2B.!!$R1 1980
11 TraesCS2A01G080400 chr2B 55176367 55183346 6979 False 1051.437500 5810 89.410750 86 6652 8 chr2B.!!$F1 6566
12 TraesCS2A01G080400 chr2B 55691824 55692797 973 False 419.000000 656 85.523000 3700 4600 2 chr2B.!!$F2 900
13 TraesCS2A01G080400 chr6D 131703888 131705472 1584 True 702.000000 763 84.857000 3003 4430 2 chr6D.!!$R1 1427
14 TraesCS2A01G080400 chr6A 170520406 170521990 1584 True 691.500000 758 84.584000 3003 4430 2 chr6A.!!$R1 1427
15 TraesCS2A01G080400 chr6B 229278457 229280041 1584 True 691.500000 747 84.582500 3003 4430 2 chr6B.!!$R1 1427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 238 0.107165 GCAGAGGTTGGGGTGTATCC 60.107 60.000 0.00 0.00 0.00 2.59 F
587 602 0.175989 GGGGAGAGAAGGTTGCGTAG 59.824 60.000 0.00 0.00 0.00 3.51 F
1137 1156 0.178953 AATTGAACCCTGCTGGCAGT 60.179 50.000 17.16 3.15 42.15 4.40 F
1138 1157 0.896940 ATTGAACCCTGCTGGCAGTG 60.897 55.000 17.16 11.99 42.15 3.66 F
1154 1173 1.554160 CAGTGGGAGTGCTCTCTGATT 59.446 52.381 14.98 0.00 40.29 2.57 F
3069 3133 0.179062 ACGCAATCAGATCTGGGCTC 60.179 55.000 22.42 8.96 0.00 4.70 F
3602 3666 0.326048 ACTGGATGGAGGGGACTGAG 60.326 60.000 0.00 0.00 44.43 3.35 F
3608 3672 0.333312 TGGAGGGGACTGAGAGAGAC 59.667 60.000 0.00 0.00 44.43 3.36 F
4820 5234 0.734942 GTGTGGCTCATTGTGCATGC 60.735 55.000 11.82 11.82 32.13 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 1709 0.605319 AGGGTGTGTACAATGGTGCG 60.605 55.000 0.00 0.00 31.53 5.34 R
1918 1963 3.387374 ACAGATGGTCCAAAATGTTTGCA 59.613 39.130 0.00 0.00 0.00 4.08 R
3049 3113 0.254178 AGCCCAGATCTGATTGCGTT 59.746 50.000 24.62 6.11 0.00 4.84 R
3056 3120 3.891805 TCATAGAGAGCCCAGATCTGA 57.108 47.619 24.62 1.31 0.00 3.27 R
3087 3151 4.211164 TCGAGCATAAAATCTTGGCATACG 59.789 41.667 0.00 0.00 0.00 3.06 R
4947 5406 0.036388 ATGAGTACCAGTGTTGCCCG 60.036 55.000 0.00 0.00 0.00 6.13 R
5278 5809 0.772124 TTGCCTCTTTCCTGGACCCT 60.772 55.000 0.00 0.00 0.00 4.34 R
5330 5861 0.846693 ACATACTCATCCCTTGCCCC 59.153 55.000 0.00 0.00 0.00 5.80 R
6383 7349 0.176910 TGGTCGTGTTGCTTCAGTGA 59.823 50.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 1.741770 GGCAAGGTAGCCGTCAGTG 60.742 63.158 0.00 0.00 46.12 3.66
124 125 3.391382 GGTAGCCGTCAGTGCCCT 61.391 66.667 0.00 0.00 0.00 5.19
139 141 2.044946 CCTTGGCCCTAGGTGTGC 60.045 66.667 8.29 3.81 0.00 4.57
203 205 2.933287 TCGGCATCCACAACCCCT 60.933 61.111 0.00 0.00 0.00 4.79
218 220 0.111253 CCCCTATGGTTCCCAGATGC 59.889 60.000 0.00 0.00 36.75 3.91
219 221 0.846015 CCCTATGGTTCCCAGATGCA 59.154 55.000 0.00 0.00 36.75 3.96
220 222 1.202855 CCCTATGGTTCCCAGATGCAG 60.203 57.143 0.00 0.00 36.75 4.41
221 223 1.770658 CCTATGGTTCCCAGATGCAGA 59.229 52.381 0.00 0.00 36.75 4.26
222 224 2.224475 CCTATGGTTCCCAGATGCAGAG 60.224 54.545 0.00 0.00 36.75 3.35
223 225 0.549950 ATGGTTCCCAGATGCAGAGG 59.450 55.000 0.00 0.00 36.75 3.69
224 226 0.842030 TGGTTCCCAGATGCAGAGGT 60.842 55.000 0.00 0.00 0.00 3.85
225 227 0.329596 GGTTCCCAGATGCAGAGGTT 59.670 55.000 0.00 0.00 0.00 3.50
226 228 1.457346 GTTCCCAGATGCAGAGGTTG 58.543 55.000 0.00 0.00 0.00 3.77
227 229 0.329261 TTCCCAGATGCAGAGGTTGG 59.671 55.000 0.00 0.00 0.00 3.77
228 230 1.077212 CCCAGATGCAGAGGTTGGG 60.077 63.158 8.72 8.72 42.26 4.12
229 231 1.077212 CCAGATGCAGAGGTTGGGG 60.077 63.158 0.00 0.00 0.00 4.96
230 232 1.687612 CAGATGCAGAGGTTGGGGT 59.312 57.895 0.00 0.00 0.00 4.95
231 233 0.679002 CAGATGCAGAGGTTGGGGTG 60.679 60.000 0.00 0.00 0.00 4.61
232 234 1.136329 AGATGCAGAGGTTGGGGTGT 61.136 55.000 0.00 0.00 0.00 4.16
233 235 0.618458 GATGCAGAGGTTGGGGTGTA 59.382 55.000 0.00 0.00 0.00 2.90
234 236 1.212935 GATGCAGAGGTTGGGGTGTAT 59.787 52.381 0.00 0.00 0.00 2.29
235 237 0.618458 TGCAGAGGTTGGGGTGTATC 59.382 55.000 0.00 0.00 0.00 2.24
236 238 0.107165 GCAGAGGTTGGGGTGTATCC 60.107 60.000 0.00 0.00 0.00 2.59
237 239 1.584724 CAGAGGTTGGGGTGTATCCT 58.415 55.000 0.00 0.00 36.25 3.24
238 240 1.486726 CAGAGGTTGGGGTGTATCCTC 59.513 57.143 0.00 0.00 43.29 3.71
239 241 0.837940 GAGGTTGGGGTGTATCCTCC 59.162 60.000 0.00 0.00 38.81 4.30
240 242 0.421904 AGGTTGGGGTGTATCCTCCT 59.578 55.000 0.00 0.00 35.35 3.69
241 243 1.203570 AGGTTGGGGTGTATCCTCCTT 60.204 52.381 0.00 0.00 35.35 3.36
242 244 1.639108 GGTTGGGGTGTATCCTCCTTT 59.361 52.381 0.00 0.00 35.35 3.11
243 245 2.042569 GGTTGGGGTGTATCCTCCTTTT 59.957 50.000 0.00 0.00 35.35 2.27
244 246 3.501568 GGTTGGGGTGTATCCTCCTTTTT 60.502 47.826 0.00 0.00 35.35 1.94
311 313 2.997315 CCGGCACCTGGTCTGAGA 60.997 66.667 0.00 0.00 0.00 3.27
312 314 2.262915 CGGCACCTGGTCTGAGAC 59.737 66.667 3.47 3.47 0.00 3.36
313 315 2.574018 CGGCACCTGGTCTGAGACA 61.574 63.158 15.33 0.00 33.68 3.41
314 316 1.892819 CGGCACCTGGTCTGAGACAT 61.893 60.000 15.33 0.00 33.68 3.06
317 319 0.612229 CACCTGGTCTGAGACATGCT 59.388 55.000 15.33 0.00 33.68 3.79
343 346 0.706433 ATGTCAATGAGCCCCCAGTT 59.294 50.000 0.00 0.00 0.00 3.16
361 364 2.933878 TTCAAGGCGAGGCACAACGT 62.934 55.000 0.00 0.00 33.66 3.99
449 455 0.390124 CCGGCGGCAACCTATACTAA 59.610 55.000 15.42 0.00 0.00 2.24
475 481 1.273552 GGGGGAGAGAGGGGAGATATG 60.274 61.905 0.00 0.00 0.00 1.78
493 507 3.626596 AGGGAAGGAGAGGGGGCA 61.627 66.667 0.00 0.00 0.00 5.36
537 551 2.059786 CCATGCCGGGCCTTTGATT 61.060 57.895 17.97 0.00 0.00 2.57
585 600 1.536662 AGGGGAGAGAAGGTTGCGT 60.537 57.895 0.00 0.00 0.00 5.24
586 601 0.252103 AGGGGAGAGAAGGTTGCGTA 60.252 55.000 0.00 0.00 0.00 4.42
587 602 0.175989 GGGGAGAGAAGGTTGCGTAG 59.824 60.000 0.00 0.00 0.00 3.51
654 669 4.135153 CGGGTGAGGTGAGGAGCG 62.135 72.222 0.00 0.00 0.00 5.03
667 682 0.678048 AGGAGCGTTTTGAGATGGGC 60.678 55.000 0.00 0.00 0.00 5.36
705 720 8.314751 AGGAATCTGATGTATTAAGGGATTACG 58.685 37.037 0.00 0.00 30.54 3.18
710 725 6.822442 TGATGTATTAAGGGATTACGCTCAA 58.178 36.000 0.00 0.00 38.34 3.02
741 756 9.499479 GTCACTGATGAAGATCACCATTATTAT 57.501 33.333 0.00 0.00 36.31 1.28
771 786 2.438868 TGTAGCGGATGGATCGATTG 57.561 50.000 0.00 0.00 0.00 2.67
781 796 5.871524 CGGATGGATCGATTGATAATCTTGT 59.128 40.000 0.00 0.00 34.09 3.16
803 818 5.176774 TGTTAAGCTATCAGTTGTCGTTGTG 59.823 40.000 0.00 0.00 0.00 3.33
804 819 3.386768 AGCTATCAGTTGTCGTTGTGT 57.613 42.857 0.00 0.00 0.00 3.72
943 958 7.881142 TGTCAAATTACCTTGAAACCAGTATG 58.119 34.615 0.00 0.00 37.08 2.39
977 992 2.038557 TCAAAGGGTTCCTCCTCGAAAG 59.961 50.000 0.00 0.00 35.80 2.62
1031 1047 5.186198 CAACCGGGAAAGATACAAAGAGAT 58.814 41.667 6.32 0.00 0.00 2.75
1034 1050 5.045869 ACCGGGAAAGATACAAAGAGATGAA 60.046 40.000 6.32 0.00 0.00 2.57
1037 1053 6.478344 CGGGAAAGATACAAAGAGATGAAGAG 59.522 42.308 0.00 0.00 0.00 2.85
1039 1055 7.494298 GGGAAAGATACAAAGAGATGAAGAGAC 59.506 40.741 0.00 0.00 0.00 3.36
1046 1065 7.670009 ACAAAGAGATGAAGAGACAGATTTG 57.330 36.000 0.00 0.00 0.00 2.32
1048 1067 7.603404 ACAAAGAGATGAAGAGACAGATTTGAG 59.397 37.037 0.00 0.00 0.00 3.02
1049 1068 6.855763 AGAGATGAAGAGACAGATTTGAGT 57.144 37.500 0.00 0.00 0.00 3.41
1067 1086 5.560722 TGAGTGGAATCTACTGGAAAACA 57.439 39.130 3.39 0.00 0.00 2.83
1068 1087 5.305585 TGAGTGGAATCTACTGGAAAACAC 58.694 41.667 3.39 0.00 0.00 3.32
1134 1153 1.203287 GAGAAATTGAACCCTGCTGGC 59.797 52.381 3.63 0.00 37.83 4.85
1135 1154 0.968405 GAAATTGAACCCTGCTGGCA 59.032 50.000 3.63 0.00 37.83 4.92
1136 1155 0.971386 AAATTGAACCCTGCTGGCAG 59.029 50.000 10.94 10.94 43.26 4.85
1137 1156 0.178953 AATTGAACCCTGCTGGCAGT 60.179 50.000 17.16 3.15 42.15 4.40
1138 1157 0.896940 ATTGAACCCTGCTGGCAGTG 60.897 55.000 17.16 11.99 42.15 3.66
1139 1158 2.674380 GAACCCTGCTGGCAGTGG 60.674 66.667 17.16 19.96 42.15 4.00
1154 1173 1.554160 CAGTGGGAGTGCTCTCTGATT 59.446 52.381 14.98 0.00 40.29 2.57
1265 1285 6.542821 TGAGTCCTAATGGTCTTTCATGTTT 58.457 36.000 0.00 0.00 32.02 2.83
1271 1291 7.175990 TCCTAATGGTCTTTCATGTTTGTAACC 59.824 37.037 0.00 0.00 34.23 2.85
1613 1640 5.398603 TCTCTTAGCTGGAGAAGACAAAG 57.601 43.478 15.70 0.00 36.96 2.77
1670 1700 3.891366 GCAATTATCCTAGGTGGCATTGT 59.109 43.478 9.08 0.00 33.58 2.71
1678 1708 6.174720 TCCTAGGTGGCATTGTTAAGATAG 57.825 41.667 9.08 0.00 35.26 2.08
1679 1709 4.757149 CCTAGGTGGCATTGTTAAGATAGC 59.243 45.833 0.00 0.00 0.00 2.97
1710 1740 4.998672 TGTACACACCCTTATGTAGCAAAC 59.001 41.667 0.00 0.00 32.05 2.93
1806 1842 5.623596 GCAGGTTGACAAGTTACCTTTTTGT 60.624 40.000 5.53 0.00 40.24 2.83
1832 1868 3.541996 TGCTTGTTCTCTGTTGTCTGA 57.458 42.857 0.00 0.00 0.00 3.27
1848 1884 8.362464 TGTTGTCTGAAAGTAGTATACCTCAT 57.638 34.615 0.00 0.00 44.47 2.90
1980 2025 2.183478 TCAGTACCACCATGCAAGTG 57.817 50.000 12.15 12.15 34.91 3.16
2039 2084 5.741982 GGCCTTTATAGCACATGTTTTAACG 59.258 40.000 0.00 0.00 0.00 3.18
2055 2100 4.620589 TTAACGGACCAACATGTTCCTA 57.379 40.909 8.48 0.00 0.00 2.94
2275 2329 9.094578 TGGAGAGTTGGAGAAAATATCTATAGG 57.905 37.037 0.00 0.00 38.96 2.57
2291 2345 5.280062 ATCTATAGGAGATCGAACTGTCGGA 60.280 44.000 0.00 0.00 41.37 4.55
2459 2516 2.519013 GGATGGGATATTGGTTGGAGC 58.481 52.381 0.00 0.00 0.00 4.70
2483 2540 6.308282 GCTCAGATGCTCAAAATCAAAAGAAG 59.692 38.462 0.00 0.00 0.00 2.85
2616 2673 9.249053 CTAAAGAGGCTACTCCATATCTGATAA 57.751 37.037 0.81 0.00 45.11 1.75
2792 2853 1.975680 AGGTCAGTAAAAGGCTCGGAA 59.024 47.619 0.00 0.00 0.00 4.30
2982 3046 4.644498 TGTTGCTGAAGAATCTGATGACA 58.356 39.130 0.00 0.00 0.00 3.58
2984 3048 4.276058 TGCTGAAGAATCTGATGACACA 57.724 40.909 0.00 0.00 0.00 3.72
3049 3113 6.017400 ACTTCGAGATGTAAGTCGGTTTAA 57.983 37.500 0.00 0.00 36.81 1.52
3056 3120 5.410439 AGATGTAAGTCGGTTTAAACGCAAT 59.590 36.000 12.07 0.00 0.00 3.56
3069 3133 0.179062 ACGCAATCAGATCTGGGCTC 60.179 55.000 22.42 8.96 0.00 4.70
3087 3151 4.502962 GGCTCTCTATGATAGTCAATGCC 58.497 47.826 0.00 4.62 0.00 4.40
3158 3222 6.827586 AAGTTTGAGGTACACTTTGTTTCA 57.172 33.333 0.00 0.00 0.00 2.69
3161 3225 6.093633 AGTTTGAGGTACACTTTGTTTCACTC 59.906 38.462 0.00 0.00 0.00 3.51
3203 3267 2.436646 GAGGTGGCATGGTCACGG 60.437 66.667 0.00 0.00 39.27 4.94
3290 3354 4.369872 AGATCTTCTCCCAGACCATTTCT 58.630 43.478 0.00 0.00 33.33 2.52
3296 3360 6.388100 TCTTCTCCCAGACCATTTCTTATGAT 59.612 38.462 0.00 0.00 28.96 2.45
3362 3426 2.840651 TGAAGTTTGGGCCCTTTTCAAA 59.159 40.909 25.70 12.08 0.00 2.69
3584 3648 5.957842 TTTCACATTGTGTCCCTTATCAC 57.042 39.130 16.06 0.00 34.79 3.06
3602 3666 0.326048 ACTGGATGGAGGGGACTGAG 60.326 60.000 0.00 0.00 44.43 3.35
3608 3672 0.333312 TGGAGGGGACTGAGAGAGAC 59.667 60.000 0.00 0.00 44.43 3.36
3705 3925 4.377021 TGTACCTGAAAGCAGTTACACTG 58.623 43.478 0.00 0.00 42.71 3.66
3948 4171 6.155221 ACAAGTGAGATGGCTTTATGTCTCTA 59.845 38.462 0.00 0.00 38.29 2.43
4030 4256 5.591067 TCTTTACGGTTTCCAGTGAAAATGT 59.409 36.000 0.00 0.00 41.92 2.71
4314 4548 3.118775 TCTGTGGAAACGATATGTCAGGG 60.119 47.826 0.00 0.00 0.00 4.45
4712 5019 1.384502 TGGGATCTGCCTACCCCAG 60.385 63.158 0.00 0.00 43.46 4.45
4738 5045 5.202004 TGTTTGGGACTAAAGGCTTTGTTA 58.798 37.500 22.32 1.59 0.00 2.41
4756 5135 7.800847 GCTTTGTTATTGTTGTTGTTGTTGTTT 59.199 29.630 0.00 0.00 0.00 2.83
4757 5136 8.993852 TTTGTTATTGTTGTTGTTGTTGTTTG 57.006 26.923 0.00 0.00 0.00 2.93
4758 5137 7.121974 TGTTATTGTTGTTGTTGTTGTTTGG 57.878 32.000 0.00 0.00 0.00 3.28
4759 5138 6.929049 TGTTATTGTTGTTGTTGTTGTTTGGA 59.071 30.769 0.00 0.00 0.00 3.53
4760 5139 5.854431 ATTGTTGTTGTTGTTGTTTGGAC 57.146 34.783 0.00 0.00 0.00 4.02
4762 5141 4.551388 TGTTGTTGTTGTTGTTTGGACTC 58.449 39.130 0.00 0.00 0.00 3.36
4764 5143 4.433186 TGTTGTTGTTGTTTGGACTCTG 57.567 40.909 0.00 0.00 0.00 3.35
4766 5145 1.748493 TGTTGTTGTTTGGACTCTGGC 59.252 47.619 0.00 0.00 0.00 4.85
4782 5196 7.232534 TGGACTCTGGCTTTACATTTTATTGTT 59.767 33.333 0.00 0.00 0.00 2.83
4786 5200 7.721402 TCTGGCTTTACATTTTATTGTTGTGT 58.279 30.769 0.00 0.00 0.00 3.72
4820 5234 0.734942 GTGTGGCTCATTGTGCATGC 60.735 55.000 11.82 11.82 32.13 4.06
4940 5399 8.680903 AGCATTCATGAAATTTAGTAACTCAGG 58.319 33.333 13.09 0.00 0.00 3.86
4983 5444 5.916661 ACTCATGAGTACGATAAACCTGT 57.083 39.130 26.87 0.00 40.43 4.00
5001 5462 6.619801 ACCTGTCGAGGAAAAATATTATGC 57.380 37.500 0.00 0.00 42.93 3.14
5107 5575 2.633967 AGCCTGCAAATGTTGAATTCCA 59.366 40.909 2.27 0.00 0.00 3.53
5131 5600 3.304257 GGACTGTGATGTCTTTGCACTTG 60.304 47.826 0.00 0.00 37.16 3.16
5132 5601 3.544684 ACTGTGATGTCTTTGCACTTGA 58.455 40.909 0.00 0.00 33.83 3.02
5133 5602 4.139786 ACTGTGATGTCTTTGCACTTGAT 58.860 39.130 0.00 0.00 33.83 2.57
5134 5603 4.581824 ACTGTGATGTCTTTGCACTTGATT 59.418 37.500 0.00 0.00 33.83 2.57
5135 5604 5.068198 ACTGTGATGTCTTTGCACTTGATTT 59.932 36.000 0.00 0.00 33.83 2.17
5286 5817 2.095263 CGCATTTGTTTACAGGGTCCAG 60.095 50.000 0.00 0.00 0.00 3.86
5294 5825 1.952621 TACAGGGTCCAGGAAAGAGG 58.047 55.000 0.00 0.00 0.00 3.69
5304 5835 2.242043 CAGGAAAGAGGCAACATGGTT 58.758 47.619 0.00 0.00 41.41 3.67
5305 5836 3.420893 CAGGAAAGAGGCAACATGGTTA 58.579 45.455 0.00 0.00 41.41 2.85
5319 5850 2.401583 TGGTTATGCACAGCTAGGTG 57.598 50.000 20.16 20.16 41.72 4.00
5321 5852 2.505407 TGGTTATGCACAGCTAGGTGAT 59.495 45.455 27.87 13.54 41.32 3.06
5326 5857 1.002366 GCACAGCTAGGTGATTGTCG 58.998 55.000 27.87 9.70 41.32 4.35
5330 5861 2.094494 ACAGCTAGGTGATTGTCGTGAG 60.094 50.000 27.87 0.00 0.00 3.51
5334 5865 1.745489 GGTGATTGTCGTGAGGGGC 60.745 63.158 0.00 0.00 0.00 5.80
5335 5866 1.003839 GTGATTGTCGTGAGGGGCA 60.004 57.895 0.00 0.00 0.00 5.36
5338 5899 1.002134 ATTGTCGTGAGGGGCAAGG 60.002 57.895 0.00 0.00 0.00 3.61
5352 5913 3.365472 GGGCAAGGGATGAGTATGTTTT 58.635 45.455 0.00 0.00 0.00 2.43
5353 5914 3.131046 GGGCAAGGGATGAGTATGTTTTG 59.869 47.826 0.00 0.00 0.00 2.44
5358 5919 3.117888 AGGGATGAGTATGTTTTGCCGAT 60.118 43.478 0.00 0.00 0.00 4.18
5363 5924 4.269183 TGAGTATGTTTTGCCGATGGATT 58.731 39.130 0.00 0.00 0.00 3.01
5367 5928 2.513753 TGTTTTGCCGATGGATTCTGT 58.486 42.857 0.00 0.00 0.00 3.41
5368 5929 2.890311 TGTTTTGCCGATGGATTCTGTT 59.110 40.909 0.00 0.00 0.00 3.16
5383 5944 3.770625 TGTTGCCACAGACGAGAAA 57.229 47.368 0.00 0.00 0.00 2.52
5387 5948 1.040646 TGCCACAGACGAGAAAGACT 58.959 50.000 0.00 0.00 0.00 3.24
5422 5983 4.162690 GGGATTGCCGGAGCGTCT 62.163 66.667 5.05 0.00 44.31 4.18
5441 6002 4.038271 TCTGGAATTGGCATTTCAGAGT 57.962 40.909 20.12 0.00 46.39 3.24
5480 6042 6.479884 ACTTCATCCTAATTTTGCAGAGTCT 58.520 36.000 0.00 0.00 0.00 3.24
5483 6045 4.908601 TCCTAATTTTGCAGAGTCTGGA 57.091 40.909 21.54 16.58 31.21 3.86
5487 6049 6.070251 TCCTAATTTTGCAGAGTCTGGATGTA 60.070 38.462 21.54 7.67 30.73 2.29
5570 6136 6.039717 CAGAAAACAACAAATGGAGGAGAAGA 59.960 38.462 0.00 0.00 0.00 2.87
5671 6238 7.095270 AGCTCATTAAAAAGAGATGCCAAAAG 58.905 34.615 7.02 0.00 33.74 2.27
5731 6298 2.895404 AGCAATTGAAAGACATGGCACT 59.105 40.909 10.34 0.00 0.00 4.40
5732 6299 4.081406 AGCAATTGAAAGACATGGCACTA 58.919 39.130 10.34 0.00 0.00 2.74
5733 6300 4.157289 AGCAATTGAAAGACATGGCACTAG 59.843 41.667 10.34 0.00 0.00 2.57
5734 6301 4.082571 GCAATTGAAAGACATGGCACTAGT 60.083 41.667 10.34 0.00 0.00 2.57
5735 6302 5.123820 GCAATTGAAAGACATGGCACTAGTA 59.876 40.000 10.34 0.00 0.00 1.82
5778 6376 1.207329 GCGAGGGAAAGTGGACACTAT 59.793 52.381 5.25 0.00 41.58 2.12
5780 6378 3.868754 GCGAGGGAAAGTGGACACTATTT 60.869 47.826 5.25 0.00 41.58 1.40
5784 6382 5.256474 AGGGAAAGTGGACACTATTTGATG 58.744 41.667 5.25 0.00 41.58 3.07
5785 6383 4.399303 GGGAAAGTGGACACTATTTGATGG 59.601 45.833 5.25 0.00 41.58 3.51
5786 6384 5.253330 GGAAAGTGGACACTATTTGATGGA 58.747 41.667 5.25 0.00 41.58 3.41
5787 6385 5.888161 GGAAAGTGGACACTATTTGATGGAT 59.112 40.000 5.25 0.00 41.58 3.41
5788 6386 6.038714 GGAAAGTGGACACTATTTGATGGATC 59.961 42.308 5.25 0.00 41.58 3.36
5789 6387 5.965033 AGTGGACACTATTTGATGGATCT 57.035 39.130 2.58 0.00 40.43 2.75
5790 6388 5.678583 AGTGGACACTATTTGATGGATCTG 58.321 41.667 2.58 0.00 40.43 2.90
5791 6389 4.274459 GTGGACACTATTTGATGGATCTGC 59.726 45.833 0.00 0.00 0.00 4.26
5792 6390 4.080413 TGGACACTATTTGATGGATCTGCA 60.080 41.667 0.00 0.00 0.00 4.41
5793 6391 5.068636 GGACACTATTTGATGGATCTGCAT 58.931 41.667 0.00 0.00 0.00 3.96
5794 6392 6.183361 TGGACACTATTTGATGGATCTGCATA 60.183 38.462 0.00 0.00 0.00 3.14
5795 6393 6.883217 GGACACTATTTGATGGATCTGCATAT 59.117 38.462 0.00 0.00 0.00 1.78
5796 6394 8.043113 GGACACTATTTGATGGATCTGCATATA 58.957 37.037 0.00 0.00 0.00 0.86
5797 6395 9.610705 GACACTATTTGATGGATCTGCATATAT 57.389 33.333 0.00 0.00 0.00 0.86
5830 6428 8.832521 TCTAGTAAAACACTGTACAAAATGTGG 58.167 33.333 15.11 0.00 38.24 4.17
5831 6429 7.399245 AGTAAAACACTGTACAAAATGTGGT 57.601 32.000 15.11 7.63 35.62 4.16
5832 6430 8.508883 AGTAAAACACTGTACAAAATGTGGTA 57.491 30.769 15.11 5.95 35.62 3.25
5833 6431 8.958506 AGTAAAACACTGTACAAAATGTGGTAA 58.041 29.630 15.11 1.39 35.62 2.85
5834 6432 9.738832 GTAAAACACTGTACAAAATGTGGTAAT 57.261 29.630 15.11 6.31 35.02 1.89
5836 6434 8.865590 AAACACTGTACAAAATGTGGTAATTC 57.134 30.769 15.11 0.00 35.02 2.17
5837 6435 7.817418 ACACTGTACAAAATGTGGTAATTCT 57.183 32.000 15.11 0.00 35.02 2.40
5838 6436 7.648142 ACACTGTACAAAATGTGGTAATTCTG 58.352 34.615 15.11 0.00 35.02 3.02
5839 6437 7.500892 ACACTGTACAAAATGTGGTAATTCTGA 59.499 33.333 15.11 0.00 35.02 3.27
5840 6438 8.349245 CACTGTACAAAATGTGGTAATTCTGAA 58.651 33.333 0.00 0.00 0.00 3.02
5841 6439 8.908903 ACTGTACAAAATGTGGTAATTCTGAAA 58.091 29.630 0.00 0.00 0.00 2.69
5842 6440 9.912634 CTGTACAAAATGTGGTAATTCTGAAAT 57.087 29.630 0.00 0.00 0.00 2.17
5892 6490 7.803487 ATTTACTACACTTTACTAGGGGTGT 57.197 36.000 13.65 13.65 43.84 4.16
5893 6491 8.899887 ATTTACTACACTTTACTAGGGGTGTA 57.100 34.615 14.19 14.19 42.02 2.90
5894 6492 8.899887 TTTACTACACTTTACTAGGGGTGTAT 57.100 34.615 14.85 10.37 41.98 2.29
5895 6493 9.989296 TTTACTACACTTTACTAGGGGTGTATA 57.011 33.333 14.85 9.78 41.98 1.47
5896 6494 9.989296 TTACTACACTTTACTAGGGGTGTATAA 57.011 33.333 14.85 12.92 41.98 0.98
5901 6499 8.427276 ACACTTTACTAGGGGTGTATAATAAGC 58.573 37.037 9.41 0.00 40.49 3.09
5902 6500 8.648693 CACTTTACTAGGGGTGTATAATAAGCT 58.351 37.037 0.00 0.00 0.00 3.74
5903 6501 9.887862 ACTTTACTAGGGGTGTATAATAAGCTA 57.112 33.333 0.00 0.00 0.00 3.32
5910 6508 8.967779 AGGGGTGTATAATAAGCTATTCTACA 57.032 34.615 0.00 0.00 36.20 2.74
5911 6509 8.813951 AGGGGTGTATAATAAGCTATTCTACAC 58.186 37.037 20.94 20.94 46.72 2.90
5912 6510 8.813951 GGGGTGTATAATAAGCTATTCTACACT 58.186 37.037 24.00 1.29 46.68 3.55
5913 6511 9.857957 GGGTGTATAATAAGCTATTCTACACTC 57.142 37.037 24.00 21.15 46.68 3.51
5917 6515 9.063739 GTATAATAAGCTATTCTACACTCACGC 57.936 37.037 0.00 0.00 31.68 5.34
5918 6516 5.776173 ATAAGCTATTCTACACTCACGCT 57.224 39.130 0.00 0.00 0.00 5.07
5919 6517 4.457834 AAGCTATTCTACACTCACGCTT 57.542 40.909 0.00 0.00 0.00 4.68
5920 6518 5.578005 AAGCTATTCTACACTCACGCTTA 57.422 39.130 0.00 0.00 35.01 3.09
5921 6519 5.176407 AGCTATTCTACACTCACGCTTAG 57.824 43.478 0.00 0.00 0.00 2.18
5922 6520 4.882427 AGCTATTCTACACTCACGCTTAGA 59.118 41.667 0.00 0.00 0.00 2.10
5923 6521 5.357314 AGCTATTCTACACTCACGCTTAGAA 59.643 40.000 0.00 0.00 35.55 2.10
5924 6522 6.039941 AGCTATTCTACACTCACGCTTAGAAT 59.960 38.462 7.62 7.62 41.79 2.40
5925 6523 7.228906 AGCTATTCTACACTCACGCTTAGAATA 59.771 37.037 8.77 8.77 40.29 1.75
5926 6524 8.942669 CTATTCTACACTCACGCTTAGAATAG 57.057 38.462 16.88 16.88 45.82 1.73
5927 6525 5.171147 TCTACACTCACGCTTAGAATAGC 57.829 43.478 0.00 0.00 37.80 2.97
6053 7019 0.311790 CACGATGCACTTTGGTTGCT 59.688 50.000 0.00 0.00 0.00 3.91
6101 7067 5.689383 TCCTTTTGCTTGAATGTACTGTC 57.311 39.130 0.00 0.00 0.00 3.51
6130 7096 6.653989 TCAAGGAGCCTAAAGGATTTCTTAG 58.346 40.000 0.00 0.00 40.09 2.18
6161 7127 5.574188 AGCCTAAAGGAATTCTCACACAAT 58.426 37.500 5.23 0.00 37.39 2.71
6172 7138 5.784750 TTCTCACACAATCTAAAGCATCG 57.215 39.130 0.00 0.00 0.00 3.84
6187 7153 8.450964 TCTAAAGCATCGAATTACTTTTTCCTG 58.549 33.333 9.60 0.00 34.39 3.86
6188 7154 4.986622 AGCATCGAATTACTTTTTCCTGC 58.013 39.130 0.00 0.00 32.54 4.85
6198 7164 1.608590 CTTTTTCCTGCTGCGAAAGGA 59.391 47.619 3.28 3.28 40.91 3.36
6224 7190 2.926779 TGCTGAGCTGGGAGCAGT 60.927 61.111 5.83 0.00 45.56 4.40
6247 7213 6.662234 AGTGCTTCCATATAATCAATGGGATG 59.338 38.462 2.45 0.00 43.52 3.51
6248 7214 5.953548 TGCTTCCATATAATCAATGGGATGG 59.046 40.000 2.45 0.00 43.52 3.51
6249 7215 5.361857 GCTTCCATATAATCAATGGGATGGG 59.638 44.000 2.45 0.00 43.52 4.00
6251 7217 6.931202 TCCATATAATCAATGGGATGGGAT 57.069 37.500 2.45 0.00 43.52 3.85
6252 7218 6.914665 TCCATATAATCAATGGGATGGGATC 58.085 40.000 2.45 0.00 43.52 3.36
6254 7220 6.548622 CCATATAATCAATGGGATGGGATCAC 59.451 42.308 0.00 0.00 40.27 3.06
6259 7225 1.601703 TGGGATGGGATCACACACG 59.398 57.895 0.00 0.00 37.88 4.49
6260 7226 1.153168 GGGATGGGATCACACACGG 60.153 63.158 0.00 0.00 31.40 4.94
6261 7227 1.622607 GGGATGGGATCACACACGGA 61.623 60.000 0.00 0.00 31.40 4.69
6262 7228 0.179073 GGATGGGATCACACACGGAG 60.179 60.000 0.00 0.00 29.76 4.63
6288 7254 1.302033 CTTGCACAAGCCCTCTCGT 60.302 57.895 0.00 0.00 41.13 4.18
6295 7261 1.270358 ACAAGCCCTCTCGTTTGAGAC 60.270 52.381 0.00 0.00 46.25 3.36
6333 7299 8.154856 TGAAAGCTAGTAACATTTTACTGGACT 58.845 33.333 16.67 10.99 45.32 3.85
6363 7329 4.576873 TGAACACCAAGATTTGCGACTTTA 59.423 37.500 0.00 0.00 0.00 1.85
6381 7347 9.274065 GCGACTTTATTTATGTTCTGGTTTTAG 57.726 33.333 0.00 0.00 0.00 1.85
6382 7348 9.274065 CGACTTTATTTATGTTCTGGTTTTAGC 57.726 33.333 0.00 0.00 0.00 3.09
6387 7369 9.515226 TTATTTATGTTCTGGTTTTAGCTCACT 57.485 29.630 0.00 0.00 0.00 3.41
6406 7388 0.531974 TGAAGCAACACGACCAGGAC 60.532 55.000 0.00 0.00 0.00 3.85
6408 7390 2.668550 GCAACACGACCAGGACCC 60.669 66.667 0.00 0.00 0.00 4.46
6467 7450 6.608610 ACTTTCATAAGTATGTTTTGCCGAC 58.391 36.000 0.00 0.00 42.73 4.79
6500 7483 5.808042 TGCATTCAGATTCTCTTACTTGC 57.192 39.130 0.00 0.00 0.00 4.01
6504 7487 6.093219 GCATTCAGATTCTCTTACTTGCTTGA 59.907 38.462 0.00 0.00 0.00 3.02
6505 7488 7.201714 GCATTCAGATTCTCTTACTTGCTTGAT 60.202 37.037 0.00 0.00 0.00 2.57
6506 7489 7.606858 TTCAGATTCTCTTACTTGCTTGATG 57.393 36.000 0.00 0.00 0.00 3.07
6507 7490 5.583854 TCAGATTCTCTTACTTGCTTGATGC 59.416 40.000 0.00 0.00 43.25 3.91
6582 7572 1.421268 ACAGGCAAGAACAGGACATGA 59.579 47.619 0.00 0.00 0.00 3.07
6585 7575 2.040813 AGGCAAGAACAGGACATGACAT 59.959 45.455 0.00 0.00 0.00 3.06
6586 7576 2.821969 GGCAAGAACAGGACATGACATT 59.178 45.455 0.00 0.00 0.00 2.71
6587 7577 3.256631 GGCAAGAACAGGACATGACATTT 59.743 43.478 0.00 0.00 0.00 2.32
6588 7578 4.232221 GCAAGAACAGGACATGACATTTG 58.768 43.478 0.00 0.00 0.00 2.32
6589 7579 4.232221 CAAGAACAGGACATGACATTTGC 58.768 43.478 0.00 0.00 0.00 3.68
6590 7580 3.489355 AGAACAGGACATGACATTTGCA 58.511 40.909 0.00 0.00 0.00 4.08
6591 7581 4.084287 AGAACAGGACATGACATTTGCAT 58.916 39.130 0.00 0.00 0.00 3.96
6592 7582 5.255687 AGAACAGGACATGACATTTGCATA 58.744 37.500 0.00 0.00 0.00 3.14
6593 7583 5.889853 AGAACAGGACATGACATTTGCATAT 59.110 36.000 0.00 0.00 0.00 1.78
6594 7584 5.509716 ACAGGACATGACATTTGCATATG 57.490 39.130 14.68 14.68 0.00 1.78
6595 7585 4.951715 ACAGGACATGACATTTGCATATGT 59.048 37.500 20.81 20.81 41.30 2.29
6596 7586 6.121590 ACAGGACATGACATTTGCATATGTA 58.878 36.000 20.72 11.00 38.80 2.29
6597 7587 6.774170 ACAGGACATGACATTTGCATATGTAT 59.226 34.615 20.72 12.47 38.80 2.29
6600 7590 6.364165 GGACATGACATTTGCATATGTATTGC 59.636 38.462 20.72 15.38 38.80 3.56
6623 7613 9.791820 TTGCATAATTATGACTTGCATATATGC 57.208 29.630 27.45 27.45 46.51 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.371097 GAGGTTCTCGCATCGGCCA 62.371 63.158 2.24 0.00 36.38 5.36
103 104 2.391389 GCACTGACGGCTACCTTGC 61.391 63.158 0.00 0.00 0.00 4.01
208 210 0.329261 CCAACCTCTGCATCTGGGAA 59.671 55.000 0.00 0.00 0.00 3.97
209 211 1.993653 CCAACCTCTGCATCTGGGA 59.006 57.895 0.00 0.00 0.00 4.37
210 212 1.077212 CCCAACCTCTGCATCTGGG 60.077 63.158 4.81 4.81 40.85 4.45
211 213 1.077212 CCCCAACCTCTGCATCTGG 60.077 63.158 0.00 0.00 0.00 3.86
212 214 0.679002 CACCCCAACCTCTGCATCTG 60.679 60.000 0.00 0.00 0.00 2.90
213 215 1.136329 ACACCCCAACCTCTGCATCT 61.136 55.000 0.00 0.00 0.00 2.90
214 216 0.618458 TACACCCCAACCTCTGCATC 59.382 55.000 0.00 0.00 0.00 3.91
215 217 1.212935 GATACACCCCAACCTCTGCAT 59.787 52.381 0.00 0.00 0.00 3.96
216 218 0.618458 GATACACCCCAACCTCTGCA 59.382 55.000 0.00 0.00 0.00 4.41
217 219 0.107165 GGATACACCCCAACCTCTGC 60.107 60.000 0.00 0.00 0.00 4.26
218 220 1.486726 GAGGATACACCCCAACCTCTG 59.513 57.143 0.00 0.00 42.41 3.35
219 221 1.625508 GGAGGATACACCCCAACCTCT 60.626 57.143 0.00 0.00 44.32 3.69
220 222 0.837940 GGAGGATACACCCCAACCTC 59.162 60.000 0.00 0.00 42.26 3.85
221 223 3.022897 GGAGGATACACCCCAACCT 57.977 57.895 0.00 0.00 42.26 3.50
299 301 2.106566 CTAGCATGTCTCAGACCAGGT 58.893 52.381 1.24 2.94 0.00 4.00
305 307 2.149973 TGGAGCTAGCATGTCTCAGA 57.850 50.000 18.83 0.00 0.00 3.27
311 313 3.118149 TCATTGACATGGAGCTAGCATGT 60.118 43.478 18.83 17.55 41.62 3.21
312 314 3.473625 TCATTGACATGGAGCTAGCATG 58.526 45.455 18.83 14.31 0.00 4.06
313 315 3.741249 CTCATTGACATGGAGCTAGCAT 58.259 45.455 18.83 1.44 0.00 3.79
314 316 2.744166 GCTCATTGACATGGAGCTAGCA 60.744 50.000 18.83 0.00 33.85 3.49
317 319 1.141657 GGGCTCATTGACATGGAGCTA 59.858 52.381 21.31 0.00 35.52 3.32
329 331 0.040204 CCTTGAACTGGGGGCTCATT 59.960 55.000 0.00 0.00 0.00 2.57
343 346 2.664851 CGTTGTGCCTCGCCTTGA 60.665 61.111 0.00 0.00 0.00 3.02
361 364 3.636231 CGTGACCAGGAGGGCCAA 61.636 66.667 6.18 0.00 45.14 4.52
391 397 4.697756 CGAAGGTTGGCCGCCTCA 62.698 66.667 17.70 0.00 40.50 3.86
449 455 1.604592 CCCCTCTCTCCCCCTAACCT 61.605 65.000 0.00 0.00 0.00 3.50
475 481 2.770475 GCCCCCTCTCCTTCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
522 536 2.679642 CCAATCAAAGGCCCGGCA 60.680 61.111 12.58 0.00 0.00 5.69
535 549 4.778143 GCGGTCGTCCCTGCCAAT 62.778 66.667 0.00 0.00 0.00 3.16
585 600 3.546543 CAATCCCCTCGCCGCCTA 61.547 66.667 0.00 0.00 0.00 3.93
637 652 4.135153 CGCTCCTCACCTCACCCG 62.135 72.222 0.00 0.00 0.00 5.28
641 656 0.756294 TCAAAACGCTCCTCACCTCA 59.244 50.000 0.00 0.00 0.00 3.86
643 658 1.048601 TCTCAAAACGCTCCTCACCT 58.951 50.000 0.00 0.00 0.00 4.00
654 669 4.207165 TGCCTATAAGCCCATCTCAAAAC 58.793 43.478 0.00 0.00 0.00 2.43
667 682 6.767456 ACATCAGATTCCTCTTGCCTATAAG 58.233 40.000 0.00 0.00 0.00 1.73
705 720 4.934001 TCTTCATCAGTGACTTCATTGAGC 59.066 41.667 9.88 0.00 44.03 4.26
710 725 5.046087 TGGTGATCTTCATCAGTGACTTCAT 60.046 40.000 0.00 0.00 39.86 2.57
760 775 8.725148 GCTTAACAAGATTATCAATCGATCCAT 58.275 33.333 0.00 0.00 42.75 3.41
781 796 5.294356 ACACAACGACAACTGATAGCTTAA 58.706 37.500 0.00 0.00 0.00 1.85
820 835 6.411782 CACAATGACACACAATTATATGCGTC 59.588 38.462 0.00 0.00 0.00 5.19
840 855 0.894141 TTTGGCGCCTAATGCACAAT 59.106 45.000 29.70 0.00 41.33 2.71
920 935 7.461182 CCATACTGGTTTCAAGGTAATTTGA 57.539 36.000 0.00 0.00 32.28 2.69
943 958 5.904330 AACCCTTTGACAGGTTGGCTACC 62.904 52.174 10.30 10.30 44.70 3.18
977 992 7.214467 TGTCCTTCAAACATTATCCTTTGTC 57.786 36.000 0.00 0.00 0.00 3.18
1031 1047 5.551305 TTCCACTCAAATCTGTCTCTTCA 57.449 39.130 0.00 0.00 0.00 3.02
1034 1050 6.667414 AGTAGATTCCACTCAAATCTGTCTCT 59.333 38.462 8.28 0.99 42.12 3.10
1037 1053 5.814705 CCAGTAGATTCCACTCAAATCTGTC 59.185 44.000 8.28 3.00 42.12 3.51
1039 1055 5.982356 TCCAGTAGATTCCACTCAAATCTG 58.018 41.667 8.28 0.00 42.12 2.90
1046 1065 5.305585 TGTGTTTTCCAGTAGATTCCACTC 58.694 41.667 0.00 0.00 0.00 3.51
1048 1067 5.063880 ACTGTGTTTTCCAGTAGATTCCAC 58.936 41.667 0.00 0.00 41.24 4.02
1049 1068 5.304686 ACTGTGTTTTCCAGTAGATTCCA 57.695 39.130 0.00 0.00 41.24 3.53
1067 1086 3.181454 CCCCAGAAGTGAGTAACAACTGT 60.181 47.826 0.00 0.00 34.54 3.55
1068 1087 3.403038 CCCCAGAAGTGAGTAACAACTG 58.597 50.000 0.00 0.00 35.44 3.16
1112 1131 2.229784 CCAGCAGGGTTCAATTTCTCAC 59.770 50.000 0.00 0.00 0.00 3.51
1115 1134 1.260544 GCCAGCAGGGTTCAATTTCT 58.739 50.000 0.00 0.00 39.65 2.52
1134 1153 1.193323 ATCAGAGAGCACTCCCACTG 58.807 55.000 7.60 0.00 43.53 3.66
1135 1154 1.949799 AATCAGAGAGCACTCCCACT 58.050 50.000 7.60 0.00 43.53 4.00
1136 1155 2.763448 ACTAATCAGAGAGCACTCCCAC 59.237 50.000 7.60 0.00 43.53 4.61
1137 1156 3.107402 ACTAATCAGAGAGCACTCCCA 57.893 47.619 7.60 0.00 43.53 4.37
1138 1157 3.449018 TGAACTAATCAGAGAGCACTCCC 59.551 47.826 7.60 0.00 43.53 4.30
1139 1158 4.727507 TGAACTAATCAGAGAGCACTCC 57.272 45.455 7.60 0.00 43.53 3.85
1180 1199 8.721478 GTCCATAGGCTAAACATGTAACATATG 58.279 37.037 0.00 0.00 0.00 1.78
1187 1206 9.596308 TTAGATAGTCCATAGGCTAAACATGTA 57.404 33.333 0.00 0.00 0.00 2.29
1265 1285 6.879993 TCTCATAATTTTTAGCCACGGTTACA 59.120 34.615 0.00 0.00 0.00 2.41
1271 1291 6.415867 CAGCAATCTCATAATTTTTAGCCACG 59.584 38.462 0.00 0.00 0.00 4.94
1334 1354 4.261572 GCAACCAAAGAACAATGCTCACTA 60.262 41.667 0.00 0.00 0.00 2.74
1484 1505 4.613437 ACATCCCACAAATTAAGGAGCAT 58.387 39.130 0.00 0.00 0.00 3.79
1627 1657 4.244862 GCTGAGTTGGAAGAGAGAAAGAG 58.755 47.826 0.00 0.00 0.00 2.85
1631 1661 4.630644 ATTGCTGAGTTGGAAGAGAGAA 57.369 40.909 0.00 0.00 0.00 2.87
1635 1665 5.435291 AGGATAATTGCTGAGTTGGAAGAG 58.565 41.667 0.00 0.00 0.00 2.85
1636 1666 5.441718 AGGATAATTGCTGAGTTGGAAGA 57.558 39.130 0.00 0.00 0.00 2.87
1670 1700 4.569162 GTGTACAATGGTGCGCTATCTTAA 59.431 41.667 9.73 0.00 37.20 1.85
1678 1708 1.209127 GGTGTGTACAATGGTGCGC 59.791 57.895 0.00 0.00 40.09 6.09
1679 1709 0.605319 AGGGTGTGTACAATGGTGCG 60.605 55.000 0.00 0.00 31.53 5.34
1806 1842 6.203530 CAGACAACAGAGAACAAGCAATAGAA 59.796 38.462 0.00 0.00 0.00 2.10
1848 1884 8.504811 TTATGGAGATTCATGGTAGTATGGAA 57.495 34.615 0.00 0.00 0.00 3.53
1918 1963 3.387374 ACAGATGGTCCAAAATGTTTGCA 59.613 39.130 0.00 0.00 0.00 4.08
2201 2255 7.108841 TGCTCGTACTTTATTATTCTCCAGT 57.891 36.000 0.00 0.00 0.00 4.00
2325 2379 7.849804 AGGATTTCATGTCAGTGTACATAAC 57.150 36.000 0.00 0.00 38.01 1.89
2459 2516 7.368833 ACTTCTTTTGATTTTGAGCATCTGAG 58.631 34.615 0.00 0.00 34.92 3.35
2483 2540 6.147328 GGACCTGAACAACTTCATACTTGTAC 59.853 42.308 0.00 0.00 35.78 2.90
2616 2673 5.589367 AACCATATTGTATCATCCTGCCT 57.411 39.130 0.00 0.00 0.00 4.75
2982 3046 6.013725 TCAGGACATAATACTTCCACTTGTGT 60.014 38.462 0.00 0.00 0.00 3.72
2984 3048 6.620877 TCAGGACATAATACTTCCACTTGT 57.379 37.500 0.00 0.00 0.00 3.16
3049 3113 0.254178 AGCCCAGATCTGATTGCGTT 59.746 50.000 24.62 6.11 0.00 4.84
3056 3120 3.891805 TCATAGAGAGCCCAGATCTGA 57.108 47.619 24.62 1.31 0.00 3.27
3069 3133 5.518128 GCATACGGCATTGACTATCATAGAG 59.482 44.000 0.00 0.00 43.97 2.43
3087 3151 4.211164 TCGAGCATAAAATCTTGGCATACG 59.789 41.667 0.00 0.00 0.00 3.06
3158 3222 7.415653 GCTTTATTTCTGGGATCAAATTCGAGT 60.416 37.037 0.00 0.00 0.00 4.18
3161 3225 6.563422 TGCTTTATTTCTGGGATCAAATTCG 58.437 36.000 0.00 0.00 0.00 3.34
3203 3267 3.051210 GCAACAGGCAGTTTCCCC 58.949 61.111 0.00 0.00 43.97 4.81
3247 3311 8.585881 AGATCTTAGTTTCTTTAGCTGTGTGTA 58.414 33.333 0.00 0.00 0.00 2.90
3296 3360 7.971168 TCAAACGAATTTCTTGTCTTGCTTTTA 59.029 29.630 0.00 0.00 0.00 1.52
3362 3426 0.920763 TCCAGCCAATGTCCCATCCT 60.921 55.000 0.00 0.00 0.00 3.24
3432 3496 3.494626 GTGCTTGTCGTGAAATCAGAGAA 59.505 43.478 0.00 0.00 0.00 2.87
3528 3592 2.643995 TCCCGAGGTATCACATACGA 57.356 50.000 0.00 0.00 36.61 3.43
3584 3648 0.031716 TCTCAGTCCCCTCCATCCAG 60.032 60.000 0.00 0.00 0.00 3.86
3602 3666 1.472376 CCTTCTGGAATGCCGTCTCTC 60.472 57.143 0.00 0.00 36.79 3.20
3608 3672 1.094073 CAGCTCCTTCTGGAATGCCG 61.094 60.000 0.00 0.00 42.66 5.69
3705 3925 7.708051 TCAGTACTATCTTGTACAGCAGATTC 58.292 38.462 13.85 5.14 43.65 2.52
3948 4171 1.215679 TTCTCCTCCTCTCCCCGAGT 61.216 60.000 0.00 0.00 38.11 4.18
4030 4256 7.816031 GTGTACCAGTGTAAGTCTTAATAGCAA 59.184 37.037 0.00 0.00 0.00 3.91
4105 4335 6.381420 TCTCACGAGGAAGAGGAATAATTTCT 59.619 38.462 0.00 0.00 32.76 2.52
4310 4544 6.015350 TGAGAGAACTTTAAGTACTCACCCTG 60.015 42.308 18.07 0.00 32.52 4.45
4314 4548 6.746120 TGGTGAGAGAACTTTAAGTACTCAC 58.254 40.000 29.12 29.12 43.96 3.51
4452 4755 4.439426 CGGTTTGATCAACTTCCACACAAA 60.439 41.667 7.89 0.00 35.46 2.83
4600 4907 5.470777 CAGTTCAATAACCGGACCAAAAGTA 59.529 40.000 9.46 0.00 36.15 2.24
4712 5019 2.239400 AGCCTTTAGTCCCAAACAAGC 58.761 47.619 0.00 0.00 0.00 4.01
4738 5045 5.546526 AGTCCAAACAACAACAACAACAAT 58.453 33.333 0.00 0.00 0.00 2.71
4756 5135 6.719370 ACAATAAAATGTAAAGCCAGAGTCCA 59.281 34.615 0.00 0.00 0.00 4.02
4757 5136 7.158099 ACAATAAAATGTAAAGCCAGAGTCC 57.842 36.000 0.00 0.00 0.00 3.85
4758 5137 8.082242 ACAACAATAAAATGTAAAGCCAGAGTC 58.918 33.333 0.00 0.00 32.02 3.36
4759 5138 7.867403 CACAACAATAAAATGTAAAGCCAGAGT 59.133 33.333 0.00 0.00 32.02 3.24
4760 5139 7.867403 ACACAACAATAAAATGTAAAGCCAGAG 59.133 33.333 0.00 0.00 32.02 3.35
4762 5141 7.569226 GCACACAACAATAAAATGTAAAGCCAG 60.569 37.037 0.00 0.00 32.02 4.85
4764 5143 6.201806 TGCACACAACAATAAAATGTAAAGCC 59.798 34.615 0.00 0.00 32.02 4.35
4766 5145 8.976471 TGATGCACACAACAATAAAATGTAAAG 58.024 29.630 0.00 0.00 32.02 1.85
4782 5196 4.745620 CACACAAAAATGATGATGCACACA 59.254 37.500 0.00 0.00 0.00 3.72
4786 5200 3.007074 AGCCACACAAAAATGATGATGCA 59.993 39.130 0.00 0.00 0.00 3.96
4820 5234 3.190327 TGAATTGCTTGTACCGTCAATGG 59.810 43.478 0.00 0.00 30.47 3.16
4909 5367 5.883661 ACTAAATTTCATGAATGCTGTCCG 58.116 37.500 9.40 0.00 0.00 4.79
4940 5399 1.026718 CCAGTGTTGCCCGGATTCTC 61.027 60.000 0.73 0.00 0.00 2.87
4947 5406 0.036388 ATGAGTACCAGTGTTGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
4983 5444 6.912203 TTGACGCATAATATTTTTCCTCGA 57.088 33.333 0.00 0.00 0.00 4.04
5027 5490 1.541588 CCTCTGCTAGGCAAAACCAAC 59.458 52.381 0.00 0.00 43.14 3.77
5070 5536 2.096218 CAGGCTCGTTACTTCAGTTTGC 60.096 50.000 0.00 0.00 0.00 3.68
5107 5575 2.880890 GTGCAAAGACATCACAGTCCTT 59.119 45.455 0.00 0.00 39.34 3.36
5152 5634 2.252714 GCCAAAGGGGAAACATAACCA 58.747 47.619 0.00 0.00 40.01 3.67
5272 5803 3.559384 CCTCTTTCCTGGACCCTGTAAAC 60.559 52.174 0.00 0.00 0.00 2.01
5278 5809 0.772124 TTGCCTCTTTCCTGGACCCT 60.772 55.000 0.00 0.00 0.00 4.34
5286 5817 3.429410 GCATAACCATGTTGCCTCTTTCC 60.429 47.826 0.00 0.00 34.40 3.13
5294 5825 1.203052 AGCTGTGCATAACCATGTTGC 59.797 47.619 0.00 0.00 34.40 4.17
5304 5835 3.737972 CGACAATCACCTAGCTGTGCATA 60.738 47.826 0.00 0.00 36.17 3.14
5305 5836 2.636830 GACAATCACCTAGCTGTGCAT 58.363 47.619 0.00 0.00 36.17 3.96
5319 5850 1.026718 CCTTGCCCCTCACGACAATC 61.027 60.000 0.00 0.00 0.00 2.67
5321 5852 2.429930 CCTTGCCCCTCACGACAA 59.570 61.111 0.00 0.00 0.00 3.18
5326 5857 1.225704 CTCATCCCTTGCCCCTCAC 59.774 63.158 0.00 0.00 0.00 3.51
5330 5861 0.846693 ACATACTCATCCCTTGCCCC 59.153 55.000 0.00 0.00 0.00 5.80
5334 5865 3.181497 CGGCAAAACATACTCATCCCTTG 60.181 47.826 0.00 0.00 0.00 3.61
5335 5866 3.016736 CGGCAAAACATACTCATCCCTT 58.983 45.455 0.00 0.00 0.00 3.95
5338 5899 3.003689 CCATCGGCAAAACATACTCATCC 59.996 47.826 0.00 0.00 0.00 3.51
5352 5913 1.031571 GGCAACAGAATCCATCGGCA 61.032 55.000 0.00 0.00 0.00 5.69
5353 5914 1.031571 TGGCAACAGAATCCATCGGC 61.032 55.000 0.00 0.00 46.17 5.54
5367 5928 1.412710 AGTCTTTCTCGTCTGTGGCAA 59.587 47.619 0.00 0.00 0.00 4.52
5368 5929 1.040646 AGTCTTTCTCGTCTGTGGCA 58.959 50.000 0.00 0.00 0.00 4.92
5383 5944 1.954362 GCCGTCCTCATGCTCAGTCT 61.954 60.000 0.00 0.00 0.00 3.24
5387 5948 3.381983 ACGCCGTCCTCATGCTCA 61.382 61.111 0.00 0.00 0.00 4.26
5422 5983 4.834496 AGAAACTCTGAAATGCCAATTCCA 59.166 37.500 0.00 0.00 0.00 3.53
5480 6042 8.922931 ATATAAACACAATGAGCATACATCCA 57.077 30.769 0.00 0.00 0.00 3.41
5483 6045 9.578576 AAGGATATAAACACAATGAGCATACAT 57.421 29.630 0.00 0.00 0.00 2.29
5487 6049 8.970020 TCAAAAGGATATAAACACAATGAGCAT 58.030 29.630 0.00 0.00 0.00 3.79
5570 6136 7.231317 TCTGCAAGTTCATATGTTTCTCCTTTT 59.769 33.333 1.90 0.00 33.76 2.27
5630 6197 6.900568 AATGAGCTAGTCTTTCATTCTTCG 57.099 37.500 0.00 0.00 37.02 3.79
5709 6276 3.322828 AGTGCCATGTCTTTCAATTGCTT 59.677 39.130 0.00 0.00 0.00 3.91
5731 6298 0.902531 GCCAGCTCCAACCACTACTA 59.097 55.000 0.00 0.00 0.00 1.82
5732 6299 1.127567 TGCCAGCTCCAACCACTACT 61.128 55.000 0.00 0.00 0.00 2.57
5733 6300 0.250727 TTGCCAGCTCCAACCACTAC 60.251 55.000 0.00 0.00 0.00 2.73
5734 6301 0.698238 ATTGCCAGCTCCAACCACTA 59.302 50.000 0.00 0.00 0.00 2.74
5735 6302 0.178953 AATTGCCAGCTCCAACCACT 60.179 50.000 0.00 0.00 0.00 4.00
5759 6357 3.611766 AATAGTGTCCACTTTCCCTCG 57.388 47.619 5.10 0.00 42.54 4.63
5804 6402 8.832521 CCACATTTTGTACAGTGTTTTACTAGA 58.167 33.333 0.00 0.00 37.60 2.43
5805 6403 8.617809 ACCACATTTTGTACAGTGTTTTACTAG 58.382 33.333 0.00 0.00 37.60 2.57
5806 6404 8.508883 ACCACATTTTGTACAGTGTTTTACTA 57.491 30.769 0.00 0.00 37.60 1.82
5807 6405 7.399245 ACCACATTTTGTACAGTGTTTTACT 57.601 32.000 0.00 0.00 41.36 2.24
5808 6406 9.738832 ATTACCACATTTTGTACAGTGTTTTAC 57.261 29.630 0.00 0.00 0.00 2.01
5810 6408 9.308318 GAATTACCACATTTTGTACAGTGTTTT 57.692 29.630 0.00 3.99 0.00 2.43
5811 6409 8.691797 AGAATTACCACATTTTGTACAGTGTTT 58.308 29.630 0.00 3.25 0.00 2.83
5812 6410 8.134895 CAGAATTACCACATTTTGTACAGTGTT 58.865 33.333 0.00 1.31 0.00 3.32
5813 6411 7.500892 TCAGAATTACCACATTTTGTACAGTGT 59.499 33.333 0.00 0.00 0.00 3.55
5814 6412 7.870826 TCAGAATTACCACATTTTGTACAGTG 58.129 34.615 6.10 6.10 0.00 3.66
5815 6413 8.458573 TTCAGAATTACCACATTTTGTACAGT 57.541 30.769 0.00 0.00 0.00 3.55
5816 6414 9.912634 ATTTCAGAATTACCACATTTTGTACAG 57.087 29.630 0.00 0.00 0.00 2.74
5866 6464 9.325248 ACACCCCTAGTAAAGTGTAGTAAATTA 57.675 33.333 0.00 0.00 41.48 1.40
5867 6465 8.211030 ACACCCCTAGTAAAGTGTAGTAAATT 57.789 34.615 0.00 0.00 41.48 1.82
5868 6466 7.803487 ACACCCCTAGTAAAGTGTAGTAAAT 57.197 36.000 0.00 0.00 41.48 1.40
5869 6467 8.899887 ATACACCCCTAGTAAAGTGTAGTAAA 57.100 34.615 13.51 0.00 45.83 2.01
5870 6468 9.989296 TTATACACCCCTAGTAAAGTGTAGTAA 57.011 33.333 13.51 10.42 45.83 2.24
5875 6473 8.427276 GCTTATTATACACCCCTAGTAAAGTGT 58.573 37.037 8.70 8.70 45.06 3.55
5876 6474 8.648693 AGCTTATTATACACCCCTAGTAAAGTG 58.351 37.037 0.00 0.00 36.30 3.16
5877 6475 8.794364 AGCTTATTATACACCCCTAGTAAAGT 57.206 34.615 0.00 0.00 0.00 2.66
5885 6483 8.967779 TGTAGAATAGCTTATTATACACCCCT 57.032 34.615 14.18 0.00 43.75 4.79
5891 6489 9.063739 GCGTGAGTGTAGAATAGCTTATTATAC 57.936 37.037 0.00 2.91 41.09 1.47
5892 6490 9.011095 AGCGTGAGTGTAGAATAGCTTATTATA 57.989 33.333 0.00 0.00 0.00 0.98
5893 6491 7.887381 AGCGTGAGTGTAGAATAGCTTATTAT 58.113 34.615 0.00 0.00 0.00 1.28
5894 6492 7.273320 AGCGTGAGTGTAGAATAGCTTATTA 57.727 36.000 0.00 0.00 0.00 0.98
5895 6493 6.150396 AGCGTGAGTGTAGAATAGCTTATT 57.850 37.500 0.00 0.00 0.00 1.40
5896 6494 5.776173 AGCGTGAGTGTAGAATAGCTTAT 57.224 39.130 0.00 0.00 0.00 1.73
5897 6495 5.578005 AAGCGTGAGTGTAGAATAGCTTA 57.422 39.130 0.00 0.00 41.19 3.09
5898 6496 4.457834 AAGCGTGAGTGTAGAATAGCTT 57.542 40.909 0.00 0.00 38.65 3.74
5899 6497 4.882427 TCTAAGCGTGAGTGTAGAATAGCT 59.118 41.667 0.00 0.00 34.96 3.32
5900 6498 5.171147 TCTAAGCGTGAGTGTAGAATAGC 57.829 43.478 0.00 0.00 0.00 2.97
5902 6500 7.361127 GCTATTCTAAGCGTGAGTGTAGAATA 58.639 38.462 10.15 10.15 42.34 1.75
5903 6501 6.210078 GCTATTCTAAGCGTGAGTGTAGAAT 58.790 40.000 9.14 9.14 44.27 2.40
5904 6502 5.579718 GCTATTCTAAGCGTGAGTGTAGAA 58.420 41.667 0.00 0.00 40.39 2.10
5905 6503 5.171147 GCTATTCTAAGCGTGAGTGTAGA 57.829 43.478 0.00 0.00 31.76 2.59
5987 6953 8.663025 CCTCCAATGTCTCATATATTCAAATCG 58.337 37.037 0.00 0.00 0.00 3.34
5999 6965 4.387026 TTGGTTTCCTCCAATGTCTCAT 57.613 40.909 0.00 0.00 41.79 2.90
6003 6969 4.937201 AGTTTTGGTTTCCTCCAATGTC 57.063 40.909 0.00 0.00 45.30 3.06
6023 6989 2.033299 AGTGCATCGTGTGTTTTCCAAG 59.967 45.455 0.00 0.00 0.00 3.61
6053 7019 1.066430 GGCTCGAATGTGGAACCAGTA 60.066 52.381 0.00 0.00 34.36 2.74
6101 7067 4.402056 TCCTTTAGGCTCCTTGATTACG 57.598 45.455 0.00 0.00 34.44 3.18
6161 7127 8.450964 CAGGAAAAAGTAATTCGATGCTTTAGA 58.549 33.333 3.05 0.00 31.78 2.10
6172 7138 4.419522 TCGCAGCAGGAAAAAGTAATTC 57.580 40.909 0.00 0.00 0.00 2.17
6187 7153 3.577313 GGCCGATCCTTTCGCAGC 61.577 66.667 0.00 0.00 46.71 5.25
6188 7154 1.097547 ATTGGCCGATCCTTTCGCAG 61.098 55.000 0.00 0.00 46.71 5.18
6198 7164 1.822613 CAGCTCAGCATTGGCCGAT 60.823 57.895 0.00 0.00 42.56 4.18
6213 7179 2.749441 GGAAGCACTGCTCCCAGC 60.749 66.667 0.43 0.00 43.02 4.85
6224 7190 5.953548 CCATCCCATTGATTATATGGAAGCA 59.046 40.000 3.51 0.00 44.36 3.91
6247 7213 0.608640 AGAACTCCGTGTGTGATCCC 59.391 55.000 0.00 0.00 0.00 3.85
6248 7214 1.546476 AGAGAACTCCGTGTGTGATCC 59.454 52.381 0.00 0.00 0.00 3.36
6249 7215 3.440872 AGTAGAGAACTCCGTGTGTGATC 59.559 47.826 0.00 0.00 30.33 2.92
6251 7217 2.860009 AGTAGAGAACTCCGTGTGTGA 58.140 47.619 0.00 0.00 30.33 3.58
6252 7218 3.309388 CAAGTAGAGAACTCCGTGTGTG 58.691 50.000 0.00 0.00 37.50 3.82
6254 7220 2.288213 TGCAAGTAGAGAACTCCGTGTG 60.288 50.000 0.00 0.00 37.50 3.82
6255 7221 1.961394 TGCAAGTAGAGAACTCCGTGT 59.039 47.619 0.00 0.00 37.50 4.49
6256 7222 2.288213 TGTGCAAGTAGAGAACTCCGTG 60.288 50.000 0.00 0.00 37.50 4.94
6257 7223 1.961394 TGTGCAAGTAGAGAACTCCGT 59.039 47.619 0.00 0.00 37.50 4.69
6259 7225 2.739379 GCTTGTGCAAGTAGAGAACTCC 59.261 50.000 12.75 0.00 37.50 3.85
6260 7226 2.739379 GGCTTGTGCAAGTAGAGAACTC 59.261 50.000 12.75 0.00 41.91 3.01
6261 7227 2.551071 GGGCTTGTGCAAGTAGAGAACT 60.551 50.000 12.75 0.00 41.91 3.01
6262 7228 1.807142 GGGCTTGTGCAAGTAGAGAAC 59.193 52.381 12.75 0.00 41.91 3.01
6288 7254 6.874134 GCTTTCAGGTCTGTATTAGTCTCAAA 59.126 38.462 0.00 0.00 0.00 2.69
6295 7261 8.467598 TGTTACTAGCTTTCAGGTCTGTATTAG 58.532 37.037 0.00 0.00 0.00 1.73
6333 7299 4.022935 GCAAATCTTGGTGTTCATCTCACA 60.023 41.667 0.00 0.00 37.52 3.58
6363 7329 7.665559 TCAGTGAGCTAAAACCAGAACATAAAT 59.334 33.333 0.00 0.00 0.00 1.40
6381 7347 0.233332 GTCGTGTTGCTTCAGTGAGC 59.767 55.000 7.40 7.40 43.00 4.26
6382 7348 0.861837 GGTCGTGTTGCTTCAGTGAG 59.138 55.000 0.00 0.00 0.00 3.51
6383 7349 0.176910 TGGTCGTGTTGCTTCAGTGA 59.823 50.000 0.00 0.00 0.00 3.41
6384 7350 0.583438 CTGGTCGTGTTGCTTCAGTG 59.417 55.000 0.00 0.00 0.00 3.66
6387 7369 0.531974 GTCCTGGTCGTGTTGCTTCA 60.532 55.000 0.00 0.00 0.00 3.02
6406 7388 1.895131 AGCACTTAATGTTTGCCAGGG 59.105 47.619 0.00 0.00 36.91 4.45
6408 7390 3.005684 TGGAAGCACTTAATGTTTGCCAG 59.994 43.478 0.00 0.00 38.81 4.85
6500 7483 1.790623 GCAAGCTTTGTGTGCATCAAG 59.209 47.619 0.00 0.00 38.19 3.02
6506 7489 4.675510 ACATATATGCAAGCTTTGTGTGC 58.324 39.130 12.79 0.00 38.78 4.57
6507 7490 6.471198 CAGAACATATATGCAAGCTTTGTGTG 59.529 38.462 12.79 0.00 0.00 3.82
6560 7550 0.546122 TGTCCTGTTCTTGCCTGTGT 59.454 50.000 0.00 0.00 0.00 3.72
6619 7609 6.712179 TGAAATGTATTGGAAGCATGCATA 57.288 33.333 21.98 5.48 0.00 3.14
6622 7612 5.593968 TCATGAAATGTATTGGAAGCATGC 58.406 37.500 10.51 10.51 46.80 4.06
6623 7613 8.657074 AAATCATGAAATGTATTGGAAGCATG 57.343 30.769 0.00 0.00 46.80 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.