Multiple sequence alignment - TraesCS2A01G079300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G079300 chr2A 100.000 5268 0 0 677 5944 36037401 36042668 0.000000e+00 9729
1 TraesCS2A01G079300 chr2A 86.099 223 31 0 2139 2361 559846650 559846428 2.140000e-59 241
2 TraesCS2A01G079300 chr2A 100.000 129 0 0 1 129 36036725 36036853 7.700000e-59 239
3 TraesCS2A01G079300 chr2B 90.569 2937 197 41 2067 4967 54530160 54533052 0.000000e+00 3816
4 TraesCS2A01G079300 chr2B 87.357 1400 88 40 677 2034 54528812 54530164 0.000000e+00 1522
5 TraesCS2A01G079300 chr2B 89.864 661 30 12 5294 5944 54533390 54534023 0.000000e+00 815
6 TraesCS2A01G079300 chr2B 85.356 239 35 0 2120 2358 43959103 43959341 1.280000e-61 248
7 TraesCS2A01G079300 chr2B 86.364 110 5 5 1 108 54528536 54528637 1.750000e-20 111
8 TraesCS2A01G079300 chr2D 89.912 2954 194 39 2067 4983 32790145 32793031 0.000000e+00 3709
9 TraesCS2A01G079300 chr2D 88.188 1363 80 40 701 2034 32788839 32790149 0.000000e+00 1550
10 TraesCS2A01G079300 chr2D 93.725 988 26 13 4982 5944 32793000 32793976 0.000000e+00 1448
11 TraesCS2A01G079300 chr2D 86.364 242 33 0 2120 2361 5131802 5131561 1.270000e-66 265
12 TraesCS2A01G079300 chr2D 88.189 127 3 5 1 127 32788536 32788650 2.230000e-29 141
13 TraesCS2A01G079300 chr3A 78.657 417 77 8 1946 2357 411838188 411837779 3.530000e-67 267
14 TraesCS2A01G079300 chr3A 80.632 253 27 13 1459 1704 411838646 411838409 6.120000e-40 176
15 TraesCS2A01G079300 chr7B 87.215 219 28 0 2139 2357 459351600 459351382 3.560000e-62 250
16 TraesCS2A01G079300 chr4A 85.909 220 30 1 2139 2358 707655801 707656019 3.580000e-57 233
17 TraesCS2A01G079300 chr5B 80.405 148 21 6 2043 2189 254154340 254154480 8.150000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G079300 chr2A 36036725 36042668 5943 False 4984.0 9729 100.0000 1 5944 2 chr2A.!!$F1 5943
1 TraesCS2A01G079300 chr2B 54528536 54534023 5487 False 1566.0 3816 88.5385 1 5944 4 chr2B.!!$F2 5943
2 TraesCS2A01G079300 chr2D 32788536 32793976 5440 False 1712.0 3709 90.0035 1 5944 4 chr2D.!!$F1 5943
3 TraesCS2A01G079300 chr3A 411837779 411838646 867 True 221.5 267 79.6445 1459 2357 2 chr3A.!!$R1 898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 766 0.743345 ATTTTCTAGTGCCCCGTCGC 60.743 55.000 0.00 0.00 0.00 5.19 F
1556 1622 0.179070 GGCCAGGCTGAGTAAGTAGC 60.179 60.000 17.94 7.85 39.17 3.58 F
1557 1623 0.537188 GCCAGGCTGAGTAAGTAGCA 59.463 55.000 17.94 0.00 41.63 3.49 F
2596 2705 0.693767 CCCTCTGGCCTGATTCCTCT 60.694 60.000 13.33 0.00 0.00 3.69 F
3546 3658 1.483827 AGAGCTCGATGCAATTCCAGA 59.516 47.619 8.37 0.00 45.94 3.86 F
4301 4435 0.462581 GCATTGTGGCGGAGATCTCA 60.463 55.000 23.85 1.09 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2603 2712 0.698238 TGTAACTGCAATGCTCCCCT 59.302 50.0 6.82 0.00 0.00 4.79 R
3447 3559 0.395036 TAAATGCACCCATGACCCCG 60.395 55.0 0.00 0.00 0.00 5.73 R
3449 3561 1.846007 TGTAAATGCACCCATGACCC 58.154 50.0 0.00 0.00 0.00 4.46 R
3888 4021 0.031178 CAAGCACAGCAGACCAAACC 59.969 55.0 0.00 0.00 0.00 3.27 R
4379 4513 0.036388 TGCAGTGGAAGTCGGAATCC 60.036 55.0 4.54 4.54 36.21 3.01 R
5421 5639 0.440371 CGAGAAAGGAAAGCGAGTGC 59.560 55.0 0.00 0.00 43.24 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 63 2.874694 CGCAACGGCATGGAGATCG 61.875 63.158 0.00 0.00 41.24 3.69
62 65 1.766143 GCAACGGCATGGAGATCGAC 61.766 60.000 0.00 0.00 40.72 4.20
63 66 1.144057 AACGGCATGGAGATCGACC 59.856 57.895 0.00 5.27 0.00 4.79
64 67 2.355126 CGGCATGGAGATCGACCG 60.355 66.667 0.00 0.00 0.00 4.79
65 68 2.845550 CGGCATGGAGATCGACCGA 61.846 63.158 0.91 0.00 43.19 4.69
66 69 1.668294 GGCATGGAGATCGACCGAT 59.332 57.895 4.42 4.42 37.59 4.18
127 130 2.972625 TCCATGTTGGATCGAGTCAAC 58.027 47.619 20.17 20.17 42.67 3.18
743 755 1.587547 GCCTCCGGCTGATTTTCTAG 58.412 55.000 0.00 0.00 46.69 2.43
750 762 1.017387 GCTGATTTTCTAGTGCCCCG 58.983 55.000 0.00 0.00 0.00 5.73
753 765 1.287425 GATTTTCTAGTGCCCCGTCG 58.713 55.000 0.00 0.00 0.00 5.12
754 766 0.743345 ATTTTCTAGTGCCCCGTCGC 60.743 55.000 0.00 0.00 0.00 5.19
773 785 4.808895 GTCGCCAGAAAAATGGTTTCTTTT 59.191 37.500 0.00 0.00 42.75 2.27
774 786 4.808364 TCGCCAGAAAAATGGTTTCTTTTG 59.192 37.500 0.00 0.00 42.75 2.44
776 788 4.261155 GCCAGAAAAATGGTTTCTTTTGCC 60.261 41.667 0.00 0.00 42.75 4.52
778 790 4.275689 CAGAAAAATGGTTTCTTTTGCCCC 59.724 41.667 0.00 0.00 36.69 5.80
779 791 2.542020 AAATGGTTTCTTTTGCCCCG 57.458 45.000 0.00 0.00 0.00 5.73
794 806 4.742201 CCGTCGGAGCCACCACTG 62.742 72.222 4.91 0.00 38.90 3.66
963 982 2.197324 CCGGAGAGGGGAGAGAGG 59.803 72.222 0.00 0.00 35.97 3.69
985 1004 3.299190 GGAGAGGAGGCGGATCCG 61.299 72.222 30.03 30.03 44.65 4.18
1008 1031 0.596577 GTCGTGCGGCTATGGAGATA 59.403 55.000 0.00 0.00 0.00 1.98
1288 1322 3.181428 CCCCTTTCCCTCTCTTTTCTTGT 60.181 47.826 0.00 0.00 0.00 3.16
1289 1323 4.042934 CCCCTTTCCCTCTCTTTTCTTGTA 59.957 45.833 0.00 0.00 0.00 2.41
1290 1324 5.004448 CCCTTTCCCTCTCTTTTCTTGTAC 58.996 45.833 0.00 0.00 0.00 2.90
1291 1325 5.456186 CCCTTTCCCTCTCTTTTCTTGTACA 60.456 44.000 0.00 0.00 0.00 2.90
1292 1326 5.703130 CCTTTCCCTCTCTTTTCTTGTACAG 59.297 44.000 0.00 0.00 0.00 2.74
1293 1327 5.888982 TTCCCTCTCTTTTCTTGTACAGT 57.111 39.130 0.00 0.00 0.00 3.55
1321 1355 3.122297 GAGATCTCCTGACAGCAATTCG 58.878 50.000 12.00 0.00 0.00 3.34
1503 1553 8.787852 GCTCCTCCCTTTTACAGATTATAATTG 58.212 37.037 0.00 3.29 0.00 2.32
1515 1565 8.824159 ACAGATTATAATTGCTAGTACTGCAG 57.176 34.615 13.48 13.48 41.71 4.41
1517 1567 9.650539 CAGATTATAATTGCTAGTACTGCAGAT 57.349 33.333 23.35 8.42 41.71 2.90
1523 1588 7.959689 AATTGCTAGTACTGCAGATTCATAG 57.040 36.000 23.35 14.70 41.71 2.23
1524 1589 4.876125 TGCTAGTACTGCAGATTCATAGC 58.124 43.478 23.35 22.66 35.31 2.97
1527 1592 5.404968 GCTAGTACTGCAGATTCATAGCAAG 59.595 44.000 23.35 4.70 37.89 4.01
1528 1593 5.350504 AGTACTGCAGATTCATAGCAAGT 57.649 39.130 23.35 0.00 37.89 3.16
1531 1597 6.758886 AGTACTGCAGATTCATAGCAAGTAAC 59.241 38.462 23.35 0.00 37.89 2.50
1538 1604 6.423302 CAGATTCATAGCAAGTAACTAGCTGG 59.577 42.308 0.00 0.00 39.30 4.85
1542 1608 1.065854 AGCAAGTAACTAGCTGGCCAG 60.066 52.381 29.34 29.34 37.20 4.85
1551 1617 0.617535 TAGCTGGCCAGGCTGAGTAA 60.618 55.000 33.46 12.72 40.52 2.24
1552 1618 1.451028 GCTGGCCAGGCTGAGTAAG 60.451 63.158 33.46 5.87 0.00 2.34
1553 1619 1.986413 CTGGCCAGGCTGAGTAAGT 59.014 57.895 26.14 0.00 0.00 2.24
1554 1620 1.195115 CTGGCCAGGCTGAGTAAGTA 58.805 55.000 26.14 0.00 0.00 2.24
1555 1621 1.137872 CTGGCCAGGCTGAGTAAGTAG 59.862 57.143 26.14 0.00 0.00 2.57
1556 1622 0.179070 GGCCAGGCTGAGTAAGTAGC 60.179 60.000 17.94 7.85 39.17 3.58
1557 1623 0.537188 GCCAGGCTGAGTAAGTAGCA 59.463 55.000 17.94 0.00 41.63 3.49
1558 1624 1.066143 GCCAGGCTGAGTAAGTAGCAA 60.066 52.381 17.94 0.00 41.63 3.91
1559 1625 2.420687 GCCAGGCTGAGTAAGTAGCAAT 60.421 50.000 17.94 0.00 41.63 3.56
1560 1626 3.181465 GCCAGGCTGAGTAAGTAGCAATA 60.181 47.826 17.94 0.00 41.63 1.90
1561 1627 4.683400 GCCAGGCTGAGTAAGTAGCAATAA 60.683 45.833 17.94 0.00 41.63 1.40
1562 1628 4.811557 CCAGGCTGAGTAAGTAGCAATAAC 59.188 45.833 17.94 0.00 41.63 1.89
1563 1629 5.419542 CAGGCTGAGTAAGTAGCAATAACA 58.580 41.667 9.42 0.00 41.63 2.41
1564 1630 5.521735 CAGGCTGAGTAAGTAGCAATAACAG 59.478 44.000 9.42 0.00 41.63 3.16
1576 1642 3.006859 AGCAATAACAGTTTCCTTTGGCC 59.993 43.478 0.00 0.00 0.00 5.36
1577 1643 3.244044 GCAATAACAGTTTCCTTTGGCCA 60.244 43.478 0.00 0.00 0.00 5.36
1578 1644 4.306600 CAATAACAGTTTCCTTTGGCCAC 58.693 43.478 3.88 0.00 0.00 5.01
1579 1645 1.859302 AACAGTTTCCTTTGGCCACA 58.141 45.000 3.88 0.00 0.00 4.17
1818 1904 6.045318 CACTAAGTGGGTTACATGATGAGAG 58.955 44.000 0.00 0.00 0.00 3.20
1819 1905 4.494091 AAGTGGGTTACATGATGAGAGG 57.506 45.455 0.00 0.00 0.00 3.69
1821 1907 3.452627 AGTGGGTTACATGATGAGAGGAC 59.547 47.826 0.00 0.00 0.00 3.85
1973 2076 7.255451 CCTTCCATACTACTCTGTTTTGCAAAA 60.255 37.037 20.46 20.46 0.00 2.44
1992 2095 6.014898 GCAAAAACATCAAACACAAGTTCAC 58.985 36.000 0.00 0.00 36.84 3.18
2028 2132 8.077991 TGAGATGCTTCATTGTTCACTAAAAAG 58.922 33.333 2.07 0.00 0.00 2.27
2030 2134 8.632679 AGATGCTTCATTGTTCACTAAAAAGAA 58.367 29.630 2.07 0.00 0.00 2.52
2031 2135 8.807667 ATGCTTCATTGTTCACTAAAAAGAAG 57.192 30.769 0.00 0.00 34.61 2.85
2032 2136 7.995289 TGCTTCATTGTTCACTAAAAAGAAGA 58.005 30.769 0.00 0.00 33.63 2.87
2033 2137 8.465999 TGCTTCATTGTTCACTAAAAAGAAGAA 58.534 29.630 0.00 0.00 33.63 2.52
2034 2138 8.746751 GCTTCATTGTTCACTAAAAAGAAGAAC 58.253 33.333 0.00 0.00 39.11 3.01
2035 2139 9.787532 CTTCATTGTTCACTAAAAAGAAGAACA 57.212 29.630 0.00 0.00 44.62 3.18
2044 2148 8.519526 TCACTAAAAAGAAGAACAATGTTGTGT 58.480 29.630 2.20 0.00 41.31 3.72
2056 2160 5.824429 ACAATGTTGTGTATATGATGCTGC 58.176 37.500 0.00 0.00 40.49 5.25
2057 2161 5.217393 CAATGTTGTGTATATGATGCTGCC 58.783 41.667 0.00 0.00 0.00 4.85
2080 2184 4.454728 TTGCCAAAAGAATAGCATCCAC 57.545 40.909 0.00 0.00 34.72 4.02
2107 2212 3.566322 CCGTTGTTATTGTTGTCTTGGGA 59.434 43.478 0.00 0.00 0.00 4.37
2117 2222 3.882888 TGTTGTCTTGGGATGTTCTTCAC 59.117 43.478 0.00 0.00 0.00 3.18
2154 2260 3.209410 GACCATTATCCAGTTGCTGAGG 58.791 50.000 0.00 0.00 32.44 3.86
2444 2553 3.367292 CCCAAATAGCAACAACGCTGAAT 60.367 43.478 0.00 0.00 43.68 2.57
2447 2556 2.177394 TAGCAACAACGCTGAATCCA 57.823 45.000 0.00 0.00 43.68 3.41
2489 2598 4.028852 TCAGATAATGGTCGAGTGAACG 57.971 45.455 0.00 0.00 33.14 3.95
2596 2705 0.693767 CCCTCTGGCCTGATTCCTCT 60.694 60.000 13.33 0.00 0.00 3.69
2603 2712 3.706594 CTGGCCTGATTCCTCTGTACTTA 59.293 47.826 3.32 0.00 0.00 2.24
2692 2801 9.431887 GTACTTGGAATTGATCTTACTGTGTTA 57.568 33.333 0.00 0.00 0.00 2.41
2852 2961 2.162681 GCTTTTGTCAGGGTATGCAGT 58.837 47.619 0.00 0.00 0.00 4.40
2869 2978 2.939103 GCAGTCACCTATTGTCACCATC 59.061 50.000 0.00 0.00 0.00 3.51
2871 2980 4.141937 GCAGTCACCTATTGTCACCATCTA 60.142 45.833 0.00 0.00 0.00 1.98
2889 2998 7.752239 CACCATCTAACATAAGCTGTCTTTTTG 59.248 37.037 0.00 0.00 36.98 2.44
2890 2999 7.665559 ACCATCTAACATAAGCTGTCTTTTTGA 59.334 33.333 0.00 0.00 36.98 2.69
2907 3016 9.607285 GTCTTTTTGAACTAAATTGCTCGATTA 57.393 29.630 0.00 0.00 0.00 1.75
2921 3030 5.868257 TGCTCGATTATTTTTACTGTGCAG 58.132 37.500 0.00 0.00 0.00 4.41
2925 3034 4.957967 CGATTATTTTTACTGTGCAGCTCG 59.042 41.667 0.00 0.00 0.00 5.03
2932 3041 2.169832 ACTGTGCAGCTCGTAACATT 57.830 45.000 0.00 0.00 0.00 2.71
2946 3056 6.691388 GCTCGTAACATTCCATTTTGAATACC 59.309 38.462 0.00 0.00 33.27 2.73
2949 3059 7.548427 TCGTAACATTCCATTTTGAATACCGTA 59.452 33.333 0.00 0.00 33.27 4.02
3059 3171 5.246307 ACGAAAATAAGGGAGGAACTTGAG 58.754 41.667 0.00 0.00 41.55 3.02
3229 3341 2.353889 CGGAGCTTGAGGTGATTCAATG 59.646 50.000 0.00 0.00 36.55 2.82
3269 3381 2.287849 GCAGGAAAGAACAAAGGCTCAC 60.288 50.000 0.00 0.00 0.00 3.51
3299 3411 7.200434 AGAAGATAGACATACCAACCATGTT 57.800 36.000 0.00 0.00 36.76 2.71
3300 3412 7.050377 AGAAGATAGACATACCAACCATGTTG 58.950 38.462 0.00 0.00 36.76 3.33
3361 3473 3.181477 TGCAGTTCAATTGTTCTTGGTGG 60.181 43.478 5.13 0.00 0.00 4.61
3368 3480 3.814504 ATTGTTCTTGGTGGTGATCCT 57.185 42.857 0.00 0.00 34.23 3.24
3370 3482 2.862541 TGTTCTTGGTGGTGATCCTTG 58.137 47.619 0.00 0.00 34.23 3.61
3406 3518 4.335400 TGACACTGTTAGATGTGCAAGA 57.665 40.909 0.00 0.00 37.68 3.02
3447 3559 4.092091 CAGAGAGCTTCAAATTACGTCCAC 59.908 45.833 0.00 0.00 0.00 4.02
3449 3561 2.073816 AGCTTCAAATTACGTCCACGG 58.926 47.619 3.81 0.00 44.95 4.94
3477 3589 4.954875 TGGGTGCATTTACAAAGGAAAAG 58.045 39.130 0.00 0.00 0.00 2.27
3478 3590 3.745975 GGGTGCATTTACAAAGGAAAAGC 59.254 43.478 0.00 0.00 32.54 3.51
3505 3617 6.710278 TGAACAGGAGTGTGATGATTCATAA 58.290 36.000 0.00 0.00 36.84 1.90
3516 3628 6.128200 TGTGATGATTCATAAGTTGCACTCAC 60.128 38.462 12.42 8.34 33.56 3.51
3546 3658 1.483827 AGAGCTCGATGCAATTCCAGA 59.516 47.619 8.37 0.00 45.94 3.86
3548 3660 1.483827 AGCTCGATGCAATTCCAGAGA 59.516 47.619 9.09 0.00 45.94 3.10
3549 3661 1.865970 GCTCGATGCAATTCCAGAGAG 59.134 52.381 0.00 0.85 42.31 3.20
3578 3690 2.304761 CCCTGTTACCCTGCTTCTTACA 59.695 50.000 0.00 0.00 0.00 2.41
3583 3695 2.841442 ACCCTGCTTCTTACACTGTC 57.159 50.000 0.00 0.00 0.00 3.51
3598 3715 8.400186 TCTTACACTGTCATATTTGATGCATTG 58.600 33.333 0.00 0.00 33.56 2.82
3613 3730 6.566141 TGATGCATTGGTGATTAGTCAATTG 58.434 36.000 0.00 0.00 35.80 2.32
3645 3762 6.761312 TGGCATCATGAAAATTCTGAAAGTT 58.239 32.000 0.00 0.00 33.76 2.66
3647 3764 8.030692 TGGCATCATGAAAATTCTGAAAGTTAG 58.969 33.333 0.00 0.00 33.76 2.34
3648 3765 8.031277 GGCATCATGAAAATTCTGAAAGTTAGT 58.969 33.333 0.00 0.00 33.76 2.24
3656 3773 9.548208 GAAAATTCTGAAAGTTAGTATGCAGTC 57.452 33.333 0.00 0.00 33.76 3.51
3658 3775 7.602517 ATTCTGAAAGTTAGTATGCAGTCAC 57.397 36.000 0.00 0.00 33.76 3.67
3666 3783 5.819379 AGTTAGTATGCAGTCACATTCATGG 59.181 40.000 0.00 0.00 0.00 3.66
3669 3786 4.880120 AGTATGCAGTCACATTCATGGAAG 59.120 41.667 0.00 0.00 0.00 3.46
3679 3796 7.054124 GTCACATTCATGGAAGGGAACTATAA 58.946 38.462 0.00 0.00 42.68 0.98
3680 3797 7.721399 GTCACATTCATGGAAGGGAACTATAAT 59.279 37.037 0.00 0.00 42.68 1.28
3681 3798 7.720957 TCACATTCATGGAAGGGAACTATAATG 59.279 37.037 0.00 0.00 42.68 1.90
3682 3799 7.720957 CACATTCATGGAAGGGAACTATAATGA 59.279 37.037 0.00 0.00 42.68 2.57
3683 3800 8.281531 ACATTCATGGAAGGGAACTATAATGAA 58.718 33.333 0.00 0.00 42.68 2.57
3684 3801 9.305555 CATTCATGGAAGGGAACTATAATGAAT 57.694 33.333 0.00 0.00 44.93 2.57
3715 3844 8.893219 ACGATGCATTTTCTCTAGATTTATGA 57.107 30.769 0.00 0.00 0.00 2.15
3716 3845 9.499479 ACGATGCATTTTCTCTAGATTTATGAT 57.501 29.630 0.00 0.00 0.00 2.45
3746 3875 9.733556 TCTAGAAATTTGTAGTTTTAGGATGCA 57.266 29.630 18.81 0.00 0.00 3.96
3757 3886 7.326968 AGTTTTAGGATGCATTTTCTCTAGC 57.673 36.000 0.00 0.00 0.00 3.42
3758 3887 7.115414 AGTTTTAGGATGCATTTTCTCTAGCT 58.885 34.615 0.00 0.00 0.00 3.32
3760 3889 7.559590 TTTAGGATGCATTTTCTCTAGCTTC 57.440 36.000 0.00 0.00 0.00 3.86
3768 3897 6.098838 TGCATTTTCTCTAGCTTCTATCCAGA 59.901 38.462 0.00 0.00 0.00 3.86
3775 3904 6.989169 TCTCTAGCTTCTATCCAGAATTTTGC 59.011 38.462 0.00 0.00 40.03 3.68
3779 3908 6.418101 AGCTTCTATCCAGAATTTTGCAGTA 58.582 36.000 0.00 0.00 40.03 2.74
3780 3909 7.059156 AGCTTCTATCCAGAATTTTGCAGTAT 58.941 34.615 0.00 0.00 40.03 2.12
3802 3933 4.700700 TCATGTCTGCTATCATGAACTGG 58.299 43.478 0.00 0.00 44.55 4.00
3808 3939 4.937620 TCTGCTATCATGAACTGGAACAAC 59.062 41.667 0.00 0.00 38.70 3.32
3813 3944 3.843422 TCATGAACTGGAACAACCCAAT 58.157 40.909 0.00 0.00 38.70 3.16
3816 3947 6.015918 TCATGAACTGGAACAACCCAATAAT 58.984 36.000 0.00 0.00 38.70 1.28
3817 3948 5.975693 TGAACTGGAACAACCCAATAATC 57.024 39.130 0.00 0.00 38.70 1.75
3818 3949 5.640147 TGAACTGGAACAACCCAATAATCT 58.360 37.500 0.00 0.00 38.70 2.40
3823 3954 7.410174 ACTGGAACAACCCAATAATCTAATCA 58.590 34.615 0.00 0.00 38.70 2.57
3828 3959 7.865706 ACAACCCAATAATCTAATCAGTGAC 57.134 36.000 0.00 0.00 0.00 3.67
3859 3992 8.525290 AAATTTTTCTCTGGGACATAATCGAT 57.475 30.769 0.00 0.00 38.20 3.59
3869 4002 7.233553 TCTGGGACATAATCGATCTTGAAGTAT 59.766 37.037 12.90 0.00 38.20 2.12
3875 4008 5.741388 AATCGATCTTGAAGTATTGTGGC 57.259 39.130 0.00 0.00 0.00 5.01
3881 4014 5.435686 TCTTGAAGTATTGTGGCCACTAT 57.564 39.130 34.75 32.68 0.00 2.12
3901 4034 2.161855 TGCAATAGGTTTGGTCTGCTG 58.838 47.619 0.00 0.00 0.00 4.41
3912 4045 2.357881 TCTGCTGTGCTTGAGCCG 60.358 61.111 0.00 0.00 41.18 5.52
3920 4053 2.290641 CTGTGCTTGAGCCGTTTACTTT 59.709 45.455 0.00 0.00 41.18 2.66
3921 4054 3.468770 TGTGCTTGAGCCGTTTACTTTA 58.531 40.909 0.00 0.00 41.18 1.85
3923 4056 4.083537 TGTGCTTGAGCCGTTTACTTTATG 60.084 41.667 0.00 0.00 41.18 1.90
3924 4057 3.438781 TGCTTGAGCCGTTTACTTTATGG 59.561 43.478 0.00 0.00 41.18 2.74
3925 4058 3.730963 GCTTGAGCCGTTTACTTTATGGC 60.731 47.826 0.00 0.00 46.01 4.40
3929 4062 3.957671 GCCGTTTACTTTATGGCTACC 57.042 47.619 0.00 0.00 43.03 3.18
3932 4065 4.337274 GCCGTTTACTTTATGGCTACCATT 59.663 41.667 4.11 0.00 42.23 3.16
3933 4066 5.528320 GCCGTTTACTTTATGGCTACCATTA 59.472 40.000 4.11 0.00 42.23 1.90
3934 4067 6.512253 GCCGTTTACTTTATGGCTACCATTAC 60.512 42.308 4.11 0.00 42.23 1.89
3935 4068 6.539464 CCGTTTACTTTATGGCTACCATTACA 59.461 38.462 4.11 0.00 42.23 2.41
3936 4069 7.227910 CCGTTTACTTTATGGCTACCATTACAT 59.772 37.037 4.11 0.00 42.23 2.29
3937 4070 8.067784 CGTTTACTTTATGGCTACCATTACATG 58.932 37.037 4.11 0.00 42.23 3.21
3938 4071 7.504924 TTACTTTATGGCTACCATTACATGC 57.495 36.000 4.11 0.00 42.23 4.06
3939 4072 5.694995 ACTTTATGGCTACCATTACATGCT 58.305 37.500 4.11 0.00 42.23 3.79
3942 4075 3.364460 TGGCTACCATTACATGCTTGT 57.636 42.857 10.40 10.40 39.98 3.16
3947 4080 5.095490 GCTACCATTACATGCTTGTTTGTC 58.905 41.667 10.85 0.00 37.28 3.18
3949 4082 4.870363 ACCATTACATGCTTGTTTGTCAC 58.130 39.130 10.85 0.00 37.28 3.67
3950 4083 4.340666 ACCATTACATGCTTGTTTGTCACA 59.659 37.500 10.85 0.00 37.28 3.58
3951 4084 5.010922 ACCATTACATGCTTGTTTGTCACAT 59.989 36.000 10.85 0.00 37.28 3.21
3952 4085 5.346551 CCATTACATGCTTGTTTGTCACATG 59.653 40.000 10.85 0.00 42.92 3.21
3954 4087 6.625873 TTACATGCTTGTTTGTCACATGTA 57.374 33.333 10.85 9.43 46.95 2.29
3955 4088 5.710513 ACATGCTTGTTTGTCACATGTAT 57.289 34.783 0.00 0.00 46.95 2.29
3956 4089 6.816134 ACATGCTTGTTTGTCACATGTATA 57.184 33.333 0.00 0.00 46.95 1.47
3957 4090 7.395190 ACATGCTTGTTTGTCACATGTATAT 57.605 32.000 0.00 0.00 46.95 0.86
3958 4091 7.829725 ACATGCTTGTTTGTCACATGTATATT 58.170 30.769 0.00 0.00 46.95 1.28
3959 4092 8.306038 ACATGCTTGTTTGTCACATGTATATTT 58.694 29.630 0.00 0.00 46.95 1.40
3960 4093 9.142515 CATGCTTGTTTGTCACATGTATATTTT 57.857 29.630 0.00 0.00 34.77 1.82
3974 4107 9.353431 ACATGTATATTTTATGCTTGTGATGGA 57.647 29.630 0.00 0.00 0.00 3.41
4019 4153 2.474410 AGGCGGTCTTTAGTTTCAGG 57.526 50.000 0.00 0.00 0.00 3.86
4027 4161 6.199393 CGGTCTTTAGTTTCAGGTTTTCTTG 58.801 40.000 0.00 0.00 0.00 3.02
4057 4191 9.276590 GGTTGTAATAAACTAGGTTTGTGTAGT 57.723 33.333 0.00 0.00 36.37 2.73
4060 4194 9.643693 TGTAATAAACTAGGTTTGTGTAGTAGC 57.356 33.333 0.00 0.00 36.37 3.58
4062 4196 8.543862 AATAAACTAGGTTTGTGTAGTAGCAC 57.456 34.615 0.00 0.00 36.37 4.40
4063 4197 4.532314 ACTAGGTTTGTGTAGTAGCACC 57.468 45.455 0.00 0.00 38.52 5.01
4064 4198 3.899360 ACTAGGTTTGTGTAGTAGCACCA 59.101 43.478 0.00 0.00 38.52 4.17
4065 4199 3.849563 AGGTTTGTGTAGTAGCACCAA 57.150 42.857 0.00 0.00 38.52 3.67
4066 4200 3.740115 AGGTTTGTGTAGTAGCACCAAG 58.260 45.455 0.00 0.00 38.52 3.61
4067 4201 3.135895 AGGTTTGTGTAGTAGCACCAAGT 59.864 43.478 0.00 0.00 38.52 3.16
4068 4202 4.345837 AGGTTTGTGTAGTAGCACCAAGTA 59.654 41.667 0.00 0.00 38.52 2.24
4069 4203 5.058490 GGTTTGTGTAGTAGCACCAAGTAA 58.942 41.667 0.00 0.00 38.52 2.24
4070 4204 5.049886 GGTTTGTGTAGTAGCACCAAGTAAC 60.050 44.000 0.00 0.00 38.52 2.50
4071 4205 5.540400 TTGTGTAGTAGCACCAAGTAACT 57.460 39.130 0.00 0.00 38.52 2.24
4073 4207 6.845758 TGTGTAGTAGCACCAAGTAACTAT 57.154 37.500 0.00 0.00 38.52 2.12
4076 4210 8.464404 TGTGTAGTAGCACCAAGTAACTATTAG 58.536 37.037 0.00 0.00 38.52 1.73
4083 4217 8.732746 AGCACCAAGTAACTATTAGTATTTGG 57.267 34.615 20.94 20.94 38.22 3.28
4088 4222 9.391006 CCAAGTAACTATTAGTATTTGGCTGAA 57.609 33.333 15.30 0.00 31.25 3.02
4091 4225 6.944234 AACTATTAGTATTTGGCTGAAGGC 57.056 37.500 0.00 0.00 41.50 4.35
4101 4235 1.260544 GGCTGAAGGCATTTGTTCCT 58.739 50.000 0.00 0.00 44.01 3.36
4102 4236 1.067354 GGCTGAAGGCATTTGTTCCTG 60.067 52.381 0.00 0.00 44.01 3.86
4111 4245 5.540911 AGGCATTTGTTCCTGTTTTGTATG 58.459 37.500 0.00 0.00 0.00 2.39
4118 4252 2.790433 TCCTGTTTTGTATGGCAGGTC 58.210 47.619 8.96 0.00 46.23 3.85
4158 4292 1.134670 GGCACCCTCATCTAGTGACAC 60.135 57.143 0.00 0.00 39.44 3.67
4239 4373 1.194218 TCATGACCATCTCTTCGGCA 58.806 50.000 0.00 0.00 0.00 5.69
4251 4385 3.069016 TCTCTTCGGCAAACTCAACAGTA 59.931 43.478 0.00 0.00 30.14 2.74
4301 4435 0.462581 GCATTGTGGCGGAGATCTCA 60.463 55.000 23.85 1.09 0.00 3.27
4379 4513 3.119814 TGAATCTCGAGAACGTCCTTCTG 60.120 47.826 20.91 0.00 39.53 3.02
4487 4633 3.068873 AGTCTGATATCAACTCCTTCGGC 59.931 47.826 6.90 0.00 0.00 5.54
4629 4775 4.794648 CAATGGAGGCGGCCCGAA 62.795 66.667 17.02 0.83 35.76 4.30
4667 4813 2.125753 GAGTGCAGCGGAGACAGG 60.126 66.667 0.00 0.00 0.00 4.00
4681 4827 3.385384 CAGGCCGGAGCTGACTCA 61.385 66.667 5.05 0.00 45.42 3.41
4688 4834 0.318441 CGGAGCTGACTCAGGAAACA 59.682 55.000 8.17 0.00 45.42 2.83
4689 4835 1.802069 GGAGCTGACTCAGGAAACAC 58.198 55.000 8.17 0.00 45.42 3.32
4713 4859 0.037877 AGAACTGGAGCAGCTGCATT 59.962 50.000 38.24 21.10 45.16 3.56
4769 4915 2.037901 TGCCCAATTCTCAAGCAAACA 58.962 42.857 0.00 0.00 0.00 2.83
4790 4936 0.326904 TGGATGATCCTCAGGTGGCT 60.327 55.000 13.44 0.00 37.46 4.75
4907 5053 2.190841 CAACCACGCCCTTCGGTTT 61.191 57.895 0.00 0.00 41.07 3.27
4956 5102 5.362105 TCAGTGGTGAATGATGATGATGA 57.638 39.130 0.00 0.00 0.00 2.92
4957 5103 5.937111 TCAGTGGTGAATGATGATGATGAT 58.063 37.500 0.00 0.00 0.00 2.45
4958 5104 5.763204 TCAGTGGTGAATGATGATGATGATG 59.237 40.000 0.00 0.00 0.00 3.07
4959 5105 5.763204 CAGTGGTGAATGATGATGATGATGA 59.237 40.000 0.00 0.00 0.00 2.92
4960 5106 6.431234 CAGTGGTGAATGATGATGATGATGAT 59.569 38.462 0.00 0.00 0.00 2.45
4961 5107 6.431234 AGTGGTGAATGATGATGATGATGATG 59.569 38.462 0.00 0.00 0.00 3.07
4962 5108 6.430000 GTGGTGAATGATGATGATGATGATGA 59.570 38.462 0.00 0.00 0.00 2.92
4963 5109 7.121315 GTGGTGAATGATGATGATGATGATGAT 59.879 37.037 0.00 0.00 0.00 2.45
4964 5110 7.121168 TGGTGAATGATGATGATGATGATGATG 59.879 37.037 0.00 0.00 0.00 3.07
4965 5111 7.336931 GGTGAATGATGATGATGATGATGATGA 59.663 37.037 0.00 0.00 0.00 2.92
4966 5112 8.897752 GTGAATGATGATGATGATGATGATGAT 58.102 33.333 0.00 0.00 0.00 2.45
4967 5113 8.896744 TGAATGATGATGATGATGATGATGATG 58.103 33.333 0.00 0.00 0.00 3.07
4968 5114 9.113838 GAATGATGATGATGATGATGATGATGA 57.886 33.333 0.00 0.00 0.00 2.92
4969 5115 9.638176 AATGATGATGATGATGATGATGATGAT 57.362 29.630 0.00 0.00 0.00 2.45
4970 5116 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
4971 5117 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
4972 5118 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
4973 5119 9.638176 ATGATGATGATGATGATGATGATGATT 57.362 29.630 0.00 0.00 0.00 2.57
4974 5120 9.113838 TGATGATGATGATGATGATGATGATTC 57.886 33.333 0.00 0.00 0.00 2.52
4975 5121 9.336171 GATGATGATGATGATGATGATGATTCT 57.664 33.333 0.00 0.00 0.00 2.40
4976 5122 8.723942 TGATGATGATGATGATGATGATTCTC 57.276 34.615 0.00 0.00 0.00 2.87
4977 5123 7.770897 TGATGATGATGATGATGATGATTCTCC 59.229 37.037 0.00 0.00 0.00 3.71
4978 5124 7.016153 TGATGATGATGATGATGATTCTCCA 57.984 36.000 0.00 0.00 0.00 3.86
4979 5125 7.106239 TGATGATGATGATGATGATTCTCCAG 58.894 38.462 0.00 0.00 0.00 3.86
4980 5126 5.246307 TGATGATGATGATGATTCTCCAGC 58.754 41.667 0.00 0.00 0.00 4.85
4981 5127 4.976540 TGATGATGATGATTCTCCAGCT 57.023 40.909 0.00 0.00 0.00 4.24
4982 5128 4.642429 TGATGATGATGATTCTCCAGCTG 58.358 43.478 6.78 6.78 0.00 4.24
4983 5129 4.347000 TGATGATGATGATTCTCCAGCTGA 59.653 41.667 17.39 0.00 0.00 4.26
4984 5130 4.976540 TGATGATGATTCTCCAGCTGAT 57.023 40.909 17.39 0.00 0.00 2.90
4985 5131 4.642429 TGATGATGATTCTCCAGCTGATG 58.358 43.478 17.39 7.47 0.00 3.07
4986 5132 4.347000 TGATGATGATTCTCCAGCTGATGA 59.653 41.667 17.39 9.96 0.00 2.92
4987 5133 4.976540 TGATGATTCTCCAGCTGATGAT 57.023 40.909 17.39 0.00 0.00 2.45
4988 5134 4.642429 TGATGATTCTCCAGCTGATGATG 58.358 43.478 17.39 0.00 0.00 3.07
4989 5135 4.347000 TGATGATTCTCCAGCTGATGATGA 59.653 41.667 17.39 1.92 0.00 2.92
4990 5136 4.976540 TGATTCTCCAGCTGATGATGAT 57.023 40.909 17.39 4.20 0.00 2.45
4991 5137 4.642429 TGATTCTCCAGCTGATGATGATG 58.358 43.478 17.39 0.00 0.00 3.07
5034 5183 4.401525 CTGTCTTCAGCTTGCAACTTAG 57.598 45.455 0.00 0.00 34.79 2.18
5035 5184 2.549754 TGTCTTCAGCTTGCAACTTAGC 59.450 45.455 0.00 0.00 37.66 3.09
5080 5235 4.526650 TGTACATACTTCTGCCACTTCTGA 59.473 41.667 0.00 0.00 0.00 3.27
5125 5280 2.632512 TGTAGGTCAGTGCAGTGAATGA 59.367 45.455 25.45 10.70 0.00 2.57
5126 5281 3.261643 TGTAGGTCAGTGCAGTGAATGAT 59.738 43.478 25.45 13.64 0.00 2.45
5127 5282 3.430042 AGGTCAGTGCAGTGAATGATT 57.570 42.857 25.45 7.17 0.00 2.57
5201 5359 6.045318 TGTTCATTGGTGGTATTTTTGTGTG 58.955 36.000 0.00 0.00 0.00 3.82
5207 5365 3.005367 GGTGGTATTTTTGTGTGGTCTGG 59.995 47.826 0.00 0.00 0.00 3.86
5366 5583 7.307455 GCTGCTTAGGCTGAATATAAGTTACAC 60.307 40.741 7.94 0.00 39.31 2.90
5369 5587 4.957296 AGGCTGAATATAAGTTACACGGG 58.043 43.478 0.00 0.00 0.00 5.28
5374 5592 4.340666 TGAATATAAGTTACACGGGCCGTA 59.659 41.667 33.65 15.50 38.32 4.02
5379 5597 0.179153 GTTACACGGGCCGTACTCTC 60.179 60.000 33.65 16.90 38.32 3.20
5411 5629 2.247358 GAGGACAAAAGCCCATCCAAA 58.753 47.619 0.00 0.00 33.33 3.28
5421 5639 0.106519 CCCATCCAAACCCAGCTAGG 60.107 60.000 0.00 0.00 37.03 3.02
5425 5643 1.133809 TCCAAACCCAGCTAGGCACT 61.134 55.000 0.00 0.00 46.37 4.40
5500 5730 1.308216 CCCCAATCCCACTCCTCCT 60.308 63.158 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 79 1.973515 TCCATGAGGATTCCCGAGATG 59.026 52.381 0.00 0.00 39.61 2.90
687 690 1.349627 CATGGAGTCAACGCGATGC 59.650 57.895 15.93 7.97 0.00 3.91
689 692 0.465705 ATCCATGGAGTCAACGCGAT 59.534 50.000 21.33 0.00 0.00 4.58
750 762 3.643159 AGAAACCATTTTTCTGGCGAC 57.357 42.857 0.00 0.00 40.15 5.19
753 765 4.261155 GGCAAAAGAAACCATTTTTCTGGC 60.261 41.667 0.13 5.29 40.15 4.85
754 766 4.275689 GGGCAAAAGAAACCATTTTTCTGG 59.724 41.667 0.13 0.00 38.62 3.86
778 790 4.742201 CCAGTGGTGGCTCCGACG 62.742 72.222 0.00 0.00 36.89 5.12
796 808 1.327764 GTAAGAAAATCGGCTGAGCGG 59.672 52.381 5.56 5.56 0.00 5.52
797 809 2.271800 AGTAAGAAAATCGGCTGAGCG 58.728 47.619 0.00 0.00 0.00 5.03
921 937 1.407979 CCCGTCCTTATACTGAACGCT 59.592 52.381 0.00 0.00 0.00 5.07
925 941 1.125633 GCCCCCGTCCTTATACTGAA 58.874 55.000 0.00 0.00 0.00 3.02
926 942 1.111116 CGCCCCCGTCCTTATACTGA 61.111 60.000 0.00 0.00 0.00 3.41
928 944 2.505167 GCGCCCCCGTCCTTATACT 61.505 63.158 0.00 0.00 36.67 2.12
929 945 2.030113 GCGCCCCCGTCCTTATAC 59.970 66.667 0.00 0.00 36.67 1.47
956 975 1.421646 CTCCTCTCCTCTCCCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
963 982 2.366153 ATCCGCCTCCTCTCCTCTCC 62.366 65.000 0.00 0.00 0.00 3.71
985 1004 2.954868 CATAGCCGCACGACCGAC 60.955 66.667 0.00 0.00 0.00 4.79
1043 1066 2.879462 CGCCGTAGACGAACTGGC 60.879 66.667 3.07 1.67 43.02 4.85
1256 1279 1.296662 GGGAAAGGGGTGGATGGGAT 61.297 60.000 0.00 0.00 0.00 3.85
1261 1284 0.423544 AGAGAGGGAAAGGGGTGGAT 59.576 55.000 0.00 0.00 0.00 3.41
1288 1322 5.527951 GTCAGGAGATCTCATTCGTACTGTA 59.472 44.000 23.85 7.66 0.00 2.74
1289 1323 4.336993 GTCAGGAGATCTCATTCGTACTGT 59.663 45.833 23.85 0.00 0.00 3.55
1290 1324 4.336713 TGTCAGGAGATCTCATTCGTACTG 59.663 45.833 23.85 18.02 0.00 2.74
1291 1325 4.527944 TGTCAGGAGATCTCATTCGTACT 58.472 43.478 23.85 7.28 0.00 2.73
1292 1326 4.791411 GCTGTCAGGAGATCTCATTCGTAC 60.791 50.000 23.85 12.21 0.00 3.67
1293 1327 3.316588 GCTGTCAGGAGATCTCATTCGTA 59.683 47.826 23.85 5.07 0.00 3.43
1321 1355 0.610232 AATCTTGCCCACTGGAGTGC 60.610 55.000 0.91 0.00 44.34 4.40
1334 1381 2.125147 TGAGCCGCCGGAATCTTG 60.125 61.111 7.68 0.00 0.00 3.02
1376 1423 4.135153 CTCTCGGACCTGCGGTGG 62.135 72.222 4.94 0.00 35.25 4.61
1503 1553 4.876125 TGCTATGAATCTGCAGTACTAGC 58.124 43.478 14.67 18.06 32.55 3.42
1507 1557 6.758886 AGTTACTTGCTATGAATCTGCAGTAC 59.241 38.462 14.67 7.07 38.01 2.73
1511 1561 5.755375 GCTAGTTACTTGCTATGAATCTGCA 59.245 40.000 11.25 0.00 34.69 4.41
1513 1563 6.423302 CCAGCTAGTTACTTGCTATGAATCTG 59.577 42.308 19.55 7.11 40.20 2.90
1514 1564 6.520272 CCAGCTAGTTACTTGCTATGAATCT 58.480 40.000 19.55 0.00 40.20 2.40
1515 1565 5.178438 GCCAGCTAGTTACTTGCTATGAATC 59.822 44.000 19.55 3.94 40.20 2.52
1517 1567 4.442706 GCCAGCTAGTTACTTGCTATGAA 58.557 43.478 19.55 0.00 40.20 2.57
1519 1569 3.134458 GGCCAGCTAGTTACTTGCTATG 58.866 50.000 19.55 14.75 40.20 2.23
1520 1570 2.771943 TGGCCAGCTAGTTACTTGCTAT 59.228 45.455 19.55 0.00 40.20 2.97
1523 1588 1.373570 CTGGCCAGCTAGTTACTTGC 58.626 55.000 22.33 10.60 32.79 4.01
1524 1589 2.014068 GCCTGGCCAGCTAGTTACTTG 61.014 57.143 28.39 10.54 0.00 3.16
1527 1592 0.462759 CAGCCTGGCCAGCTAGTTAC 60.463 60.000 28.39 9.43 38.95 2.50
1528 1593 0.617535 TCAGCCTGGCCAGCTAGTTA 60.618 55.000 28.39 6.94 38.95 2.24
1531 1597 1.045350 TACTCAGCCTGGCCAGCTAG 61.045 60.000 28.39 20.92 38.95 3.42
1538 1604 0.537188 TGCTACTTACTCAGCCTGGC 59.463 55.000 11.65 11.65 36.95 4.85
1542 1608 5.420409 ACTGTTATTGCTACTTACTCAGCC 58.580 41.667 0.00 0.00 36.95 4.85
1551 1617 5.048013 GCCAAAGGAAACTGTTATTGCTACT 60.048 40.000 0.00 0.00 42.68 2.57
1552 1618 5.161358 GCCAAAGGAAACTGTTATTGCTAC 58.839 41.667 0.00 0.00 42.68 3.58
1553 1619 4.219725 GGCCAAAGGAAACTGTTATTGCTA 59.780 41.667 0.00 0.00 42.68 3.49
1554 1620 3.006859 GGCCAAAGGAAACTGTTATTGCT 59.993 43.478 0.00 0.00 42.68 3.91
1555 1621 3.244044 TGGCCAAAGGAAACTGTTATTGC 60.244 43.478 0.61 0.00 42.68 3.56
1556 1622 4.202202 TGTGGCCAAAGGAAACTGTTATTG 60.202 41.667 7.24 0.00 42.68 1.90
1557 1623 3.964031 TGTGGCCAAAGGAAACTGTTATT 59.036 39.130 7.24 0.00 42.68 1.40
1558 1624 3.320826 GTGTGGCCAAAGGAAACTGTTAT 59.679 43.478 7.24 0.00 42.68 1.89
1559 1625 2.691011 GTGTGGCCAAAGGAAACTGTTA 59.309 45.455 7.24 0.00 42.68 2.41
1560 1626 1.480545 GTGTGGCCAAAGGAAACTGTT 59.519 47.619 7.24 0.00 42.68 3.16
1561 1627 1.111277 GTGTGGCCAAAGGAAACTGT 58.889 50.000 7.24 0.00 42.68 3.55
1562 1628 1.110442 TGTGTGGCCAAAGGAAACTG 58.890 50.000 7.24 0.00 42.68 3.16
1564 1630 0.820871 TGTGTGTGGCCAAAGGAAAC 59.179 50.000 7.24 0.72 0.00 2.78
1576 1642 2.120282 TTGCCTGCACCTGTGTGTG 61.120 57.895 0.00 0.00 44.65 3.82
1577 1643 2.120909 GTTGCCTGCACCTGTGTGT 61.121 57.895 0.00 0.00 44.65 3.72
1578 1644 1.825191 AGTTGCCTGCACCTGTGTG 60.825 57.895 0.00 0.00 45.65 3.82
1579 1645 1.825191 CAGTTGCCTGCACCTGTGT 60.825 57.895 8.36 0.00 32.78 3.72
1617 1683 1.638467 GATGCCGTCGTTGATCTGC 59.362 57.895 0.00 0.00 0.00 4.26
1973 2076 5.643379 ACTGTGAACTTGTGTTTGATGTT 57.357 34.783 0.00 0.00 36.39 2.71
1992 2095 6.315642 ACAATGAAGCATCTCACATCTTACTG 59.684 38.462 0.00 0.00 0.00 2.74
2028 2132 8.400947 AGCATCATATACACAACATTGTTCTTC 58.599 33.333 0.00 0.00 39.91 2.87
2030 2134 7.680350 GCAGCATCATATACACAACATTGTTCT 60.680 37.037 0.00 0.00 39.91 3.01
2031 2135 6.415867 GCAGCATCATATACACAACATTGTTC 59.584 38.462 0.00 0.00 39.91 3.18
2032 2136 6.267817 GCAGCATCATATACACAACATTGTT 58.732 36.000 0.00 0.00 39.91 2.83
2033 2137 5.221106 GGCAGCATCATATACACAACATTGT 60.221 40.000 0.00 0.00 43.36 2.71
2034 2138 5.217393 GGCAGCATCATATACACAACATTG 58.783 41.667 0.00 0.00 0.00 2.82
2035 2139 4.888823 TGGCAGCATCATATACACAACATT 59.111 37.500 0.00 0.00 0.00 2.71
2036 2140 4.463070 TGGCAGCATCATATACACAACAT 58.537 39.130 0.00 0.00 0.00 2.71
2037 2141 3.883669 TGGCAGCATCATATACACAACA 58.116 40.909 0.00 0.00 0.00 3.33
2040 2144 3.253921 GCAATGGCAGCATCATATACACA 59.746 43.478 0.00 0.00 40.72 3.72
2044 2148 3.157750 TGGCAATGGCAGCATCATATA 57.842 42.857 5.05 0.00 43.71 0.86
2049 2153 1.066716 TCTTTTGGCAATGGCAGCATC 60.067 47.619 9.96 0.00 43.71 3.91
2056 2160 4.141892 TGGATGCTATTCTTTTGGCAATGG 60.142 41.667 0.00 0.00 38.21 3.16
2057 2161 4.807304 GTGGATGCTATTCTTTTGGCAATG 59.193 41.667 0.00 0.00 38.21 2.82
2080 2184 3.057596 AGACAACAATAACAACGGGCATG 60.058 43.478 0.00 0.00 0.00 4.06
2117 2222 7.278424 GGATAATGGTCATTGTTCACATTTTGG 59.722 37.037 6.46 0.00 34.08 3.28
2131 2237 4.458397 CTCAGCAACTGGATAATGGTCAT 58.542 43.478 0.00 0.00 31.51 3.06
2154 2260 4.514066 ACCGAAAAACTACATCTCCACAAC 59.486 41.667 0.00 0.00 0.00 3.32
2296 2405 5.414454 TCCTCTCCATACAAACCAAATTTCG 59.586 40.000 0.00 0.00 0.00 3.46
2372 2481 9.376075 CATCATAATATCATCCTGGTTGTAGAC 57.624 37.037 4.76 0.00 0.00 2.59
2383 2492 9.381033 CTCTTTCTGGTCATCATAATATCATCC 57.619 37.037 0.00 0.00 0.00 3.51
2444 2553 4.007457 GCCTTCAGCAAGCATGGA 57.993 55.556 0.00 0.00 42.97 3.41
2596 2705 1.912731 TGCAATGCTCCCCTAAGTACA 59.087 47.619 6.82 0.00 0.00 2.90
2603 2712 0.698238 TGTAACTGCAATGCTCCCCT 59.302 50.000 6.82 0.00 0.00 4.79
2714 2823 6.795144 TTTGCATCCAACATTTCCTGATAT 57.205 33.333 0.00 0.00 0.00 1.63
2907 3016 4.513692 TGTTACGAGCTGCACAGTAAAAAT 59.486 37.500 13.33 0.00 31.88 1.82
2908 3017 3.872182 TGTTACGAGCTGCACAGTAAAAA 59.128 39.130 13.33 5.76 31.88 1.94
2921 3030 6.691388 GGTATTCAAAATGGAATGTTACGAGC 59.309 38.462 0.00 0.00 37.98 5.03
2925 3034 9.843334 TTTACGGTATTCAAAATGGAATGTTAC 57.157 29.630 0.00 0.00 37.98 2.50
2932 3041 7.449086 AGTTTCCTTTACGGTATTCAAAATGGA 59.551 33.333 0.00 0.00 0.00 3.41
2949 3059 9.573133 CGAAGAAATAAATGCATAGTTTCCTTT 57.427 29.630 19.46 12.67 31.02 3.11
2974 3086 1.078848 AGCAGAAGCCAGGTAAGCG 60.079 57.895 0.00 0.00 43.56 4.68
3037 3149 4.636206 CCTCAAGTTCCTCCCTTATTTTCG 59.364 45.833 0.00 0.00 0.00 3.46
3229 3341 7.807977 TCCTGCTTGAGAATATTTATGGAAC 57.192 36.000 0.00 0.00 0.00 3.62
3269 3381 7.824289 TGGTTGGTATGTCTATCTTCTTTCTTG 59.176 37.037 0.00 0.00 0.00 3.02
3299 3411 2.875672 GCTGTATGTGCACCCTTCTTCA 60.876 50.000 15.69 3.41 0.00 3.02
3300 3412 1.740025 GCTGTATGTGCACCCTTCTTC 59.260 52.381 15.69 0.00 0.00 2.87
3352 3464 1.144708 TGCAAGGATCACCACCAAGAA 59.855 47.619 0.00 0.00 38.94 2.52
3361 3473 3.674997 TGTCTAAAGGTGCAAGGATCAC 58.325 45.455 0.00 0.00 0.00 3.06
3368 3480 4.887071 AGTGTCAATTGTCTAAAGGTGCAA 59.113 37.500 5.13 0.00 0.00 4.08
3370 3482 4.275936 ACAGTGTCAATTGTCTAAAGGTGC 59.724 41.667 5.13 0.00 0.00 5.01
3406 3518 6.183360 GCTCTCTGAGAATTTACATGTTGCAT 60.183 38.462 2.30 0.00 0.00 3.96
3447 3559 0.395036 TAAATGCACCCATGACCCCG 60.395 55.000 0.00 0.00 0.00 5.73
3449 3561 1.846007 TGTAAATGCACCCATGACCC 58.154 50.000 0.00 0.00 0.00 4.46
3477 3589 4.128925 TCATCACACTCCTGTTCATAGC 57.871 45.455 0.00 0.00 0.00 2.97
3478 3590 6.343703 TGAATCATCACACTCCTGTTCATAG 58.656 40.000 0.00 0.00 0.00 2.23
3505 3617 9.891893 AGCTCTTAATGCTATGTGAGTGCAACT 62.892 40.741 0.00 0.00 45.44 3.16
3516 3628 3.992427 TGCATCGAGCTCTTAATGCTATG 59.008 43.478 29.60 15.43 43.78 2.23
3561 3673 3.995048 GACAGTGTAAGAAGCAGGGTAAC 59.005 47.826 0.00 0.00 0.00 2.50
3578 3690 5.653330 TCACCAATGCATCAAATATGACAGT 59.347 36.000 0.00 0.00 38.69 3.55
3583 3695 8.354426 TGACTAATCACCAATGCATCAAATATG 58.646 33.333 0.00 0.00 0.00 1.78
3598 3715 6.808212 CCATGTTCAACAATTGACTAATCACC 59.192 38.462 13.59 0.00 39.87 4.02
3634 3751 7.161404 TGTGACTGCATACTAACTTTCAGAAT 58.839 34.615 0.00 0.00 0.00 2.40
3637 3754 6.974932 ATGTGACTGCATACTAACTTTCAG 57.025 37.500 0.00 0.00 0.00 3.02
3645 3762 5.612725 TCCATGAATGTGACTGCATACTA 57.387 39.130 0.00 0.00 0.00 1.82
3647 3764 4.036027 CCTTCCATGAATGTGACTGCATAC 59.964 45.833 0.00 0.00 0.00 2.39
3648 3765 4.201657 CCTTCCATGAATGTGACTGCATA 58.798 43.478 0.00 0.00 0.00 3.14
3650 3767 2.439409 CCTTCCATGAATGTGACTGCA 58.561 47.619 0.00 0.00 0.00 4.41
3656 3773 7.720957 TCATTATAGTTCCCTTCCATGAATGTG 59.279 37.037 0.00 0.00 0.00 3.21
3658 3775 8.696043 TTCATTATAGTTCCCTTCCATGAATG 57.304 34.615 0.00 0.00 0.00 2.67
3679 3796 9.499479 AGAGAAAATGCATCGTTAGATATTCAT 57.501 29.630 0.00 0.00 34.85 2.57
3680 3797 8.893219 AGAGAAAATGCATCGTTAGATATTCA 57.107 30.769 0.00 0.00 34.85 2.57
3720 3849 9.733556 TGCATCCTAAAACTACAAATTTCTAGA 57.266 29.630 7.40 0.00 0.00 2.43
3727 3856 9.860898 GAGAAAATGCATCCTAAAACTACAAAT 57.139 29.630 0.00 0.00 0.00 2.32
3742 3871 6.835174 TGGATAGAAGCTAGAGAAAATGCAT 58.165 36.000 0.00 0.00 0.00 3.96
3757 3886 8.442632 TGATACTGCAAAATTCTGGATAGAAG 57.557 34.615 0.00 0.00 45.53 2.85
3758 3887 8.843262 CATGATACTGCAAAATTCTGGATAGAA 58.157 33.333 0.00 0.00 46.32 2.10
3760 3889 8.162878 ACATGATACTGCAAAATTCTGGATAG 57.837 34.615 0.00 0.00 0.00 2.08
3780 3909 4.406649 TCCAGTTCATGATAGCAGACATGA 59.593 41.667 0.00 13.04 46.96 3.07
3789 3918 4.588899 TGGGTTGTTCCAGTTCATGATAG 58.411 43.478 0.00 0.00 38.11 2.08
3791 3920 3.524095 TGGGTTGTTCCAGTTCATGAT 57.476 42.857 0.00 0.00 38.11 2.45
3802 3933 8.398665 GTCACTGATTAGATTATTGGGTTGTTC 58.601 37.037 0.00 0.00 0.00 3.18
3835 3966 7.995488 AGATCGATTATGTCCCAGAGAAAAATT 59.005 33.333 0.00 0.00 0.00 1.82
3837 3968 6.889198 AGATCGATTATGTCCCAGAGAAAAA 58.111 36.000 0.00 0.00 0.00 1.94
3838 3969 6.485830 AGATCGATTATGTCCCAGAGAAAA 57.514 37.500 0.00 0.00 0.00 2.29
3848 3981 8.491152 CCACAATACTTCAAGATCGATTATGTC 58.509 37.037 0.00 0.00 0.00 3.06
3857 3990 4.265073 AGTGGCCACAATACTTCAAGATC 58.735 43.478 36.39 4.59 0.00 2.75
3859 3992 3.788227 AGTGGCCACAATACTTCAAGA 57.212 42.857 36.39 0.00 0.00 3.02
3869 4002 2.025416 ACCTATTGCATAGTGGCCACAA 60.025 45.455 36.39 22.13 0.00 3.33
3875 4008 4.336433 CAGACCAAACCTATTGCATAGTGG 59.664 45.833 0.00 0.00 34.44 4.00
3881 4014 2.161855 CAGCAGACCAAACCTATTGCA 58.838 47.619 0.00 0.00 34.17 4.08
3888 4021 0.031178 CAAGCACAGCAGACCAAACC 59.969 55.000 0.00 0.00 0.00 3.27
3898 4031 0.110192 GTAAACGGCTCAAGCACAGC 60.110 55.000 4.13 0.00 44.36 4.40
3901 4034 4.403453 CATAAAGTAAACGGCTCAAGCAC 58.597 43.478 4.13 0.00 44.36 4.40
3912 4045 7.860872 GCATGTAATGGTAGCCATAAAGTAAAC 59.139 37.037 0.62 0.00 44.40 2.01
3928 4061 4.869215 TGTGACAAACAAGCATGTAATGG 58.131 39.130 11.11 0.00 39.59 3.16
3929 4062 5.921976 ACATGTGACAAACAAGCATGTAATG 59.078 36.000 0.00 0.52 45.22 1.90
3932 4065 6.816134 ATACATGTGACAAACAAGCATGTA 57.184 33.333 9.11 15.09 44.56 2.29
3933 4066 5.710513 ATACATGTGACAAACAAGCATGT 57.289 34.783 9.11 12.15 43.61 3.21
3934 4067 8.692110 AAATATACATGTGACAAACAAGCATG 57.308 30.769 9.11 0.00 43.61 4.06
3947 4080 9.401873 CCATCACAAGCATAAAATATACATGTG 57.598 33.333 9.11 0.00 37.55 3.21
3987 4120 9.070179 ACTAAAGACCGCCTTAAAAGAAATTTA 57.930 29.630 0.00 0.00 34.00 1.40
3993 4126 6.056884 TGAAACTAAAGACCGCCTTAAAAGA 58.943 36.000 0.00 0.00 34.00 2.52
4001 4134 2.180432 ACCTGAAACTAAAGACCGCC 57.820 50.000 0.00 0.00 0.00 6.13
4003 4136 6.037830 TCAAGAAAACCTGAAACTAAAGACCG 59.962 38.462 0.00 0.00 0.00 4.79
4027 4161 9.620660 CACAAACCTAGTTTATTACAACCATTC 57.379 33.333 0.00 0.00 33.70 2.67
4057 4191 9.826574 CCAAATACTAATAGTTACTTGGTGCTA 57.173 33.333 14.59 0.00 31.14 3.49
4059 4193 7.282450 AGCCAAATACTAATAGTTACTTGGTGC 59.718 37.037 19.75 11.89 34.82 5.01
4060 4194 8.612619 CAGCCAAATACTAATAGTTACTTGGTG 58.387 37.037 19.75 15.19 34.82 4.17
4062 4196 8.958119 TCAGCCAAATACTAATAGTTACTTGG 57.042 34.615 16.85 16.85 35.15 3.61
4064 4198 9.614792 CCTTCAGCCAAATACTAATAGTTACTT 57.385 33.333 0.00 0.00 0.00 2.24
4065 4199 7.715686 GCCTTCAGCCAAATACTAATAGTTACT 59.284 37.037 0.00 0.00 34.35 2.24
4066 4200 7.497909 TGCCTTCAGCCAAATACTAATAGTTAC 59.502 37.037 0.00 0.00 42.71 2.50
4067 4201 7.570132 TGCCTTCAGCCAAATACTAATAGTTA 58.430 34.615 0.00 0.00 42.71 2.24
4068 4202 6.423182 TGCCTTCAGCCAAATACTAATAGTT 58.577 36.000 0.00 0.00 42.71 2.24
4069 4203 6.001449 TGCCTTCAGCCAAATACTAATAGT 57.999 37.500 0.00 0.00 42.71 2.12
4070 4204 7.516198 AATGCCTTCAGCCAAATACTAATAG 57.484 36.000 0.00 0.00 42.71 1.73
4071 4205 7.341769 ACAAATGCCTTCAGCCAAATACTAATA 59.658 33.333 0.00 0.00 42.71 0.98
4073 4207 5.480073 ACAAATGCCTTCAGCCAAATACTAA 59.520 36.000 0.00 0.00 42.71 2.24
4076 4210 4.192429 ACAAATGCCTTCAGCCAAATAC 57.808 40.909 0.00 0.00 42.71 1.89
4082 4216 1.067354 CAGGAACAAATGCCTTCAGCC 60.067 52.381 0.00 0.00 42.71 4.85
4083 4217 1.615392 ACAGGAACAAATGCCTTCAGC 59.385 47.619 0.00 0.00 44.14 4.26
4088 4222 5.511202 CCATACAAAACAGGAACAAATGCCT 60.511 40.000 0.00 0.00 33.99 4.75
4091 4225 5.295950 TGCCATACAAAACAGGAACAAATG 58.704 37.500 0.00 0.00 0.00 2.32
4101 4235 4.359434 TGTAGACCTGCCATACAAAACA 57.641 40.909 0.00 0.00 0.00 2.83
4102 4236 4.335594 GGATGTAGACCTGCCATACAAAAC 59.664 45.833 0.00 0.00 33.44 2.43
4111 4245 3.906720 TGTTTAGGATGTAGACCTGCC 57.093 47.619 0.00 0.00 38.31 4.85
4118 4252 5.122396 GTGCCTCACTTTGTTTAGGATGTAG 59.878 44.000 0.00 0.00 0.00 2.74
4184 4318 4.883083 TCGGATATTCATAGGCAAGACAC 58.117 43.478 0.00 0.00 0.00 3.67
4239 4373 0.250597 GGCGGGGTACTGTTGAGTTT 60.251 55.000 0.00 0.00 33.21 2.66
4301 4435 0.888285 GCAGGAACAGCAGAGCACTT 60.888 55.000 0.00 0.00 41.82 3.16
4349 4483 1.227089 CTCGAGATTCAGGCCACCG 60.227 63.158 6.58 0.00 0.00 4.94
4379 4513 0.036388 TGCAGTGGAAGTCGGAATCC 60.036 55.000 4.54 4.54 36.21 3.01
4487 4633 1.135139 AGTAGCTGCAGTATCACGGTG 59.865 52.381 16.64 0.56 0.00 4.94
4628 4774 1.946475 GCCCGAACTCCGCTAGTCTT 61.946 60.000 0.00 0.00 37.50 3.01
4629 4775 2.416432 GCCCGAACTCCGCTAGTCT 61.416 63.158 0.00 0.00 37.50 3.24
4631 4777 2.362632 AGCCCGAACTCCGCTAGT 60.363 61.111 0.00 0.00 41.49 2.57
4667 4813 2.172483 TTTCCTGAGTCAGCTCCGGC 62.172 60.000 15.10 0.00 43.29 6.13
4681 4827 3.228453 TCCAGTTCTCGTAGTGTTTCCT 58.772 45.455 0.00 0.00 0.00 3.36
4685 4831 1.961394 TGCTCCAGTTCTCGTAGTGTT 59.039 47.619 0.00 0.00 0.00 3.32
4688 4834 0.528470 GCTGCTCCAGTTCTCGTAGT 59.472 55.000 0.00 0.00 33.43 2.73
4689 4835 0.814457 AGCTGCTCCAGTTCTCGTAG 59.186 55.000 0.00 0.00 33.43 3.51
4901 5047 0.400213 AGTCCTGAATGGCAAACCGA 59.600 50.000 0.00 0.00 39.70 4.69
4956 5102 5.883115 GCTGGAGAATCATCATCATCATCAT 59.117 40.000 0.00 0.00 36.25 2.45
4957 5103 5.013183 AGCTGGAGAATCATCATCATCATCA 59.987 40.000 0.00 0.00 36.25 3.07
4958 5104 5.352846 CAGCTGGAGAATCATCATCATCATC 59.647 44.000 5.57 0.00 36.25 2.92
4959 5105 5.013183 TCAGCTGGAGAATCATCATCATCAT 59.987 40.000 15.13 0.00 36.25 2.45
4960 5106 4.347000 TCAGCTGGAGAATCATCATCATCA 59.653 41.667 15.13 0.00 36.25 3.07
4961 5107 4.895961 TCAGCTGGAGAATCATCATCATC 58.104 43.478 15.13 0.00 36.25 2.92
4962 5108 4.976540 TCAGCTGGAGAATCATCATCAT 57.023 40.909 15.13 0.00 36.25 2.45
4963 5109 4.347000 TCATCAGCTGGAGAATCATCATCA 59.653 41.667 15.13 0.00 36.25 3.07
4964 5110 4.895961 TCATCAGCTGGAGAATCATCATC 58.104 43.478 15.13 0.00 36.25 2.92
4965 5111 4.976540 TCATCAGCTGGAGAATCATCAT 57.023 40.909 15.13 0.00 36.25 2.45
4966 5112 4.347000 TCATCATCAGCTGGAGAATCATCA 59.653 41.667 15.13 0.00 36.25 3.07
4967 5113 4.895961 TCATCATCAGCTGGAGAATCATC 58.104 43.478 15.13 0.00 36.25 2.92
4968 5114 4.976540 TCATCATCAGCTGGAGAATCAT 57.023 40.909 15.13 0.00 36.25 2.45
4969 5115 4.347000 TCATCATCATCAGCTGGAGAATCA 59.653 41.667 15.13 0.00 36.25 2.57
4970 5116 4.895961 TCATCATCATCAGCTGGAGAATC 58.104 43.478 15.13 0.00 0.00 2.52
4971 5117 4.976540 TCATCATCATCAGCTGGAGAAT 57.023 40.909 15.13 0.00 0.00 2.40
4972 5118 4.347000 TCATCATCATCATCAGCTGGAGAA 59.653 41.667 15.13 0.00 0.00 2.87
4973 5119 3.901844 TCATCATCATCATCAGCTGGAGA 59.098 43.478 15.13 12.54 0.00 3.71
4974 5120 4.273148 TCATCATCATCATCAGCTGGAG 57.727 45.455 15.13 6.94 0.00 3.86
4975 5121 4.286032 TCATCATCATCATCATCAGCTGGA 59.714 41.667 15.13 4.27 0.00 3.86
4976 5122 4.579869 TCATCATCATCATCATCAGCTGG 58.420 43.478 15.13 0.00 0.00 4.85
4977 5123 5.877012 TCATCATCATCATCATCATCAGCTG 59.123 40.000 7.63 7.63 0.00 4.24
4978 5124 6.054860 TCATCATCATCATCATCATCAGCT 57.945 37.500 0.00 0.00 0.00 4.24
4979 5125 6.934048 ATCATCATCATCATCATCATCAGC 57.066 37.500 0.00 0.00 0.00 4.26
4980 5126 8.729805 AGAATCATCATCATCATCATCATCAG 57.270 34.615 0.00 0.00 0.00 2.90
4981 5127 7.770897 GGAGAATCATCATCATCATCATCATCA 59.229 37.037 0.00 0.00 36.25 3.07
4982 5128 7.770897 TGGAGAATCATCATCATCATCATCATC 59.229 37.037 0.00 0.00 36.25 2.92
4983 5129 7.633789 TGGAGAATCATCATCATCATCATCAT 58.366 34.615 0.00 0.00 36.25 2.45
4984 5130 7.016153 TGGAGAATCATCATCATCATCATCA 57.984 36.000 0.00 0.00 36.25 3.07
4985 5131 6.037720 GCTGGAGAATCATCATCATCATCATC 59.962 42.308 0.00 0.00 36.25 2.92
4986 5132 5.883115 GCTGGAGAATCATCATCATCATCAT 59.117 40.000 0.00 0.00 36.25 2.45
4987 5133 5.013183 AGCTGGAGAATCATCATCATCATCA 59.987 40.000 0.00 0.00 36.25 3.07
4988 5134 5.352846 CAGCTGGAGAATCATCATCATCATC 59.647 44.000 5.57 0.00 36.25 2.92
4989 5135 5.249420 CAGCTGGAGAATCATCATCATCAT 58.751 41.667 5.57 0.00 36.25 2.45
4990 5136 4.642429 CAGCTGGAGAATCATCATCATCA 58.358 43.478 5.57 0.00 36.25 3.07
4991 5137 3.437395 GCAGCTGGAGAATCATCATCATC 59.563 47.826 17.12 0.00 36.25 2.92
5032 5181 4.791334 AGGAGGGCTCTACATATCTAGCTA 59.209 45.833 0.00 0.00 35.30 3.32
5033 5182 3.596046 AGGAGGGCTCTACATATCTAGCT 59.404 47.826 0.00 0.00 35.30 3.32
5034 5183 3.699038 CAGGAGGGCTCTACATATCTAGC 59.301 52.174 0.00 0.00 0.00 3.42
5035 5184 4.704540 CACAGGAGGGCTCTACATATCTAG 59.295 50.000 0.00 0.00 0.00 2.43
5166 5324 9.784531 ATACCACCAATGAACAGAGAATAATAG 57.215 33.333 0.00 0.00 0.00 1.73
5171 5329 7.781324 AAAATACCACCAATGAACAGAGAAT 57.219 32.000 0.00 0.00 0.00 2.40
5249 5416 6.717084 ACCTTGGTATCCTGAAAGAAAGAAAG 59.283 38.462 0.00 0.00 34.07 2.62
5268 5436 6.165577 CCATGTTTAATGGAAGAAACCTTGG 58.834 40.000 0.00 0.00 41.64 3.61
5366 5583 3.141488 AGCAGAGAGTACGGCCCG 61.141 66.667 0.00 0.00 0.00 6.13
5369 5587 0.458716 GGTTCAGCAGAGAGTACGGC 60.459 60.000 0.00 0.00 0.00 5.68
5374 5592 1.228894 TCCCGGTTCAGCAGAGAGT 60.229 57.895 0.00 0.00 0.00 3.24
5379 5597 2.111999 TTGTCCTCCCGGTTCAGCAG 62.112 60.000 0.00 0.00 0.00 4.24
5411 5629 3.775654 GCGAGTGCCTAGCTGGGT 61.776 66.667 18.47 0.00 36.00 4.51
5421 5639 0.440371 CGAGAAAGGAAAGCGAGTGC 59.560 55.000 0.00 0.00 43.24 4.40
5425 5643 3.122948 CGAAATTCGAGAAAGGAAAGCGA 59.877 43.478 10.18 0.00 43.74 4.93
5500 5730 4.077184 GTCGTCCATGGCGGTGGA 62.077 66.667 22.59 7.28 45.78 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.