Multiple sequence alignment - TraesCS2A01G079000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G079000 chr2A 100.000 2259 0 0 1 2259 35953022 35950764 0.000000e+00 4172.0
1 TraesCS2A01G079000 chr2A 100.000 1566 0 0 2431 3996 35950592 35949027 0.000000e+00 2892.0
2 TraesCS2A01G079000 chr2A 94.139 273 15 1 1 273 496570311 496570582 7.990000e-112 414.0
3 TraesCS2A01G079000 chr2A 83.172 309 29 13 732 1030 35957730 35957435 1.100000e-65 261.0
4 TraesCS2A01G079000 chr2A 100.000 30 0 0 3284 3313 636904691 636904720 5.580000e-04 56.5
5 TraesCS2A01G079000 chr2D 90.391 1842 120 25 455 2259 32641249 32639428 0.000000e+00 2368.0
6 TraesCS2A01G079000 chr2D 90.137 730 66 4 2431 3155 32639027 32638299 0.000000e+00 944.0
7 TraesCS2A01G079000 chr2D 84.746 236 34 2 2475 2709 32639654 32639420 6.680000e-58 235.0
8 TraesCS2A01G079000 chr2D 81.882 287 24 17 732 1007 32646299 32646030 2.420000e-52 217.0
9 TraesCS2A01G079000 chr2D 79.048 210 29 8 2015 2224 32639561 32639367 3.240000e-26 130.0
10 TraesCS2A01G079000 chr2D 90.000 90 9 0 2621 2710 32639029 32638940 2.520000e-22 117.0
11 TraesCS2A01G079000 chr2B 92.004 963 43 6 1148 2097 54272722 54271781 0.000000e+00 1321.0
12 TraesCS2A01G079000 chr2B 87.582 765 82 11 2431 3187 54271586 54270827 0.000000e+00 874.0
13 TraesCS2A01G079000 chr2B 93.347 496 22 4 641 1125 54273271 54272776 0.000000e+00 723.0
14 TraesCS2A01G079000 chr2B 91.329 346 28 1 3610 3953 53910978 53910633 4.670000e-129 472.0
15 TraesCS2A01G079000 chr2B 80.792 505 54 19 561 1031 54281560 54281065 4.910000e-94 355.0
16 TraesCS2A01G079000 chr2B 85.902 305 33 7 3182 3481 54270561 54270262 2.320000e-82 316.0
17 TraesCS2A01G079000 chr2B 92.105 114 5 4 3493 3603 53911065 53910953 1.490000e-34 158.0
18 TraesCS2A01G079000 chr2B 87.755 98 12 0 2162 2259 54271605 54271508 9.070000e-22 115.0
19 TraesCS2A01G079000 chr2B 89.286 56 4 2 3497 3551 24198453 24198507 7.170000e-08 69.4
20 TraesCS2A01G079000 chr2B 100.000 33 0 0 3196 3228 150986384 150986352 1.200000e-05 62.1
21 TraesCS2A01G079000 chr1A 93.663 505 19 6 3491 3994 70922466 70921974 0.000000e+00 743.0
22 TraesCS2A01G079000 chr1A 93.704 270 17 0 5 274 585726387 585726656 4.810000e-109 405.0
23 TraesCS2A01G079000 chr1A 91.566 249 21 0 1 249 42216752 42216504 1.060000e-90 344.0
24 TraesCS2A01G079000 chr1A 93.878 49 2 1 3492 3539 39675989 39675941 5.540000e-09 73.1
25 TraesCS2A01G079000 chr6D 92.278 518 20 8 3491 3994 4798054 4797543 0.000000e+00 717.0
26 TraesCS2A01G079000 chr6D 91.962 423 19 6 3581 3994 4796074 4795658 2.680000e-161 579.0
27 TraesCS2A01G079000 chr6D 88.136 59 5 2 3494 3550 7748165 7748223 7.170000e-08 69.4
28 TraesCS2A01G079000 chr4D 90.576 382 31 2 3610 3991 475125773 475126149 5.960000e-138 501.0
29 TraesCS2A01G079000 chr4D 93.878 49 2 1 3492 3539 322221181 322221229 5.540000e-09 73.1
30 TraesCS2A01G079000 chr6A 91.336 277 23 1 1 276 107690616 107690340 1.050000e-100 377.0
31 TraesCS2A01G079000 chr6A 86.972 284 29 1 1 276 178079837 178079554 3.000000e-81 313.0
32 TraesCS2A01G079000 chr7D 80.546 293 31 11 2 273 374767834 374768121 6.770000e-48 202.0
33 TraesCS2A01G079000 chr7D 91.111 45 4 0 131 175 59395828 59395784 1.200000e-05 62.1
34 TraesCS2A01G079000 chr1B 77.816 293 45 12 1 274 579278244 579277953 3.200000e-36 163.0
35 TraesCS2A01G079000 chr1D 88.372 129 14 1 3723 3850 252284008 252284136 1.920000e-33 154.0
36 TraesCS2A01G079000 chr1D 83.333 96 13 3 3197 3289 168483854 168483949 7.120000e-13 86.1
37 TraesCS2A01G079000 chr1D 88.333 60 5 2 3493 3551 466009134 466009076 1.990000e-08 71.3
38 TraesCS2A01G079000 chr5D 80.392 153 19 7 3197 3338 363325650 363325802 5.460000e-19 106.0
39 TraesCS2A01G079000 chr6B 87.671 73 8 1 3501 3572 88573057 88573129 2.560000e-12 84.2
40 TraesCS2A01G079000 chr6B 91.111 45 2 2 3213 3256 657030365 657030408 4.310000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G079000 chr2A 35949027 35953022 3995 True 3532.0 4172 100.0000 1 3996 2 chr2A.!!$R2 3995
1 TraesCS2A01G079000 chr2D 32638299 32641249 2950 True 758.8 2368 86.8644 455 3155 5 chr2D.!!$R2 2700
2 TraesCS2A01G079000 chr2B 54270262 54273271 3009 True 669.8 1321 89.3180 641 3481 5 chr2B.!!$R4 2840
3 TraesCS2A01G079000 chr6D 4795658 4798054 2396 True 648.0 717 92.1200 3491 3994 2 chr6D.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 464 0.099436 GTCGCTTGCCATCCAACATC 59.901 55.0 0.00 0.00 0.00 3.06 F
546 547 0.247814 CGCGCATTTCCTTGTAGCTG 60.248 55.0 8.75 0.00 0.00 4.24 F
547 548 0.099436 GCGCATTTCCTTGTAGCTGG 59.901 55.0 0.30 0.00 0.00 4.85 F
1148 1172 0.320771 GGCGCTGGTTCTTTCTGAGA 60.321 55.0 7.64 0.00 0.00 3.27 F
1216 1276 0.528466 TGACAAGGATGCGATCGAGC 60.528 55.0 21.57 6.78 37.71 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 2758 0.988832 TTCCATAAGCGGGTTGACCT 59.011 50.000 2.08 0.00 36.97 3.85 R
2495 2814 2.429930 CGGTGGCTCCTCAACCAA 59.570 61.111 3.83 0.00 37.79 3.67 R
2567 2886 2.187946 GTCCATCGGTGGCTCCTG 59.812 66.667 10.80 0.00 45.63 3.86 R
2800 3134 0.465705 CATCACCGGTGCTACCATCT 59.534 55.000 30.25 3.54 38.47 2.90 R
3067 3405 0.672401 TTCGGTGCCAAGACGAATCC 60.672 55.000 0.00 0.00 41.12 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.671495 AGAATTTCTTTGCAACAGTTGTTTT 57.329 28.000 14.88 0.00 35.83 2.43
25 26 8.770438 AGAATTTCTTTGCAACAGTTGTTTTA 57.230 26.923 14.88 0.00 35.83 1.52
26 27 9.382275 AGAATTTCTTTGCAACAGTTGTTTTAT 57.618 25.926 14.88 0.00 35.83 1.40
27 28 9.986833 GAATTTCTTTGCAACAGTTGTTTTATT 57.013 25.926 14.88 6.11 35.83 1.40
28 29 9.771915 AATTTCTTTGCAACAGTTGTTTTATTG 57.228 25.926 14.88 0.44 35.83 1.90
29 30 6.343226 TCTTTGCAACAGTTGTTTTATTGC 57.657 33.333 14.88 0.00 44.66 3.56
35 36 7.967771 GCAACAGTTGTTTTATTGCATTTTT 57.032 28.000 14.88 0.00 44.01 1.94
58 59 8.770438 TTTTGCAACTGAGTTTAATGTTTTCT 57.230 26.923 0.00 0.00 0.00 2.52
59 60 7.754069 TTGCAACTGAGTTTAATGTTTTCTG 57.246 32.000 0.00 0.00 0.00 3.02
60 61 5.748152 TGCAACTGAGTTTAATGTTTTCTGC 59.252 36.000 0.00 0.00 0.00 4.26
61 62 5.748152 GCAACTGAGTTTAATGTTTTCTGCA 59.252 36.000 0.00 0.00 0.00 4.41
62 63 6.255453 GCAACTGAGTTTAATGTTTTCTGCAA 59.745 34.615 0.00 0.00 0.00 4.08
63 64 7.042523 GCAACTGAGTTTAATGTTTTCTGCAAT 60.043 33.333 0.00 0.00 0.00 3.56
64 65 8.819974 CAACTGAGTTTAATGTTTTCTGCAATT 58.180 29.630 0.00 0.00 0.00 2.32
68 69 9.474920 TGAGTTTAATGTTTTCTGCAATTAAGG 57.525 29.630 0.00 0.00 0.00 2.69
69 70 9.476202 GAGTTTAATGTTTTCTGCAATTAAGGT 57.524 29.630 0.00 0.00 0.00 3.50
70 71 9.476202 AGTTTAATGTTTTCTGCAATTAAGGTC 57.524 29.630 0.00 0.00 0.00 3.85
71 72 9.476202 GTTTAATGTTTTCTGCAATTAAGGTCT 57.524 29.630 0.00 0.00 0.00 3.85
73 74 7.951530 AATGTTTTCTGCAATTAAGGTCTTG 57.048 32.000 0.00 0.00 0.00 3.02
74 75 6.463995 TGTTTTCTGCAATTAAGGTCTTGT 57.536 33.333 0.00 0.00 0.00 3.16
75 76 6.872920 TGTTTTCTGCAATTAAGGTCTTGTT 58.127 32.000 0.00 0.00 0.00 2.83
76 77 6.756074 TGTTTTCTGCAATTAAGGTCTTGTTG 59.244 34.615 0.00 1.02 0.00 3.33
77 78 4.503741 TCTGCAATTAAGGTCTTGTTGC 57.496 40.909 19.36 19.36 41.53 4.17
78 79 3.888323 TCTGCAATTAAGGTCTTGTTGCA 59.112 39.130 23.53 23.53 44.84 4.08
79 80 4.241590 TGCAATTAAGGTCTTGTTGCAG 57.758 40.909 22.36 1.99 43.60 4.41
80 81 3.888323 TGCAATTAAGGTCTTGTTGCAGA 59.112 39.130 22.36 10.39 43.60 4.26
81 82 4.340666 TGCAATTAAGGTCTTGTTGCAGAA 59.659 37.500 22.36 9.93 43.60 3.02
82 83 5.163468 TGCAATTAAGGTCTTGTTGCAGAAA 60.163 36.000 22.36 9.70 43.60 2.52
83 84 5.752955 GCAATTAAGGTCTTGTTGCAGAAAA 59.247 36.000 20.38 0.00 41.18 2.29
84 85 6.257630 GCAATTAAGGTCTTGTTGCAGAAAAA 59.742 34.615 20.38 0.00 41.18 1.94
121 122 9.469239 GAAGTTTTGTTATAAAACGTAGATCCG 57.531 33.333 10.71 0.00 43.01 4.18
122 123 8.538409 AGTTTTGTTATAAAACGTAGATCCGT 57.462 30.769 10.71 0.00 43.01 4.69
123 124 8.650714 AGTTTTGTTATAAAACGTAGATCCGTC 58.349 33.333 10.71 0.00 43.01 4.79
124 125 6.795053 TTGTTATAAAACGTAGATCCGTCG 57.205 37.500 0.00 0.00 40.85 5.12
125 126 5.879237 TGTTATAAAACGTAGATCCGTCGT 58.121 37.500 0.00 0.08 40.85 4.34
126 127 7.010697 TGTTATAAAACGTAGATCCGTCGTA 57.989 36.000 7.62 0.56 40.85 3.43
127 128 7.125755 TGTTATAAAACGTAGATCCGTCGTAG 58.874 38.462 7.62 0.00 40.85 3.51
128 129 5.991328 ATAAAACGTAGATCCGTCGTAGA 57.009 39.130 7.62 0.00 40.85 2.59
141 142 2.831685 TCGTAGACCATTGCAACACT 57.168 45.000 0.00 1.48 0.00 3.55
142 143 3.945981 TCGTAGACCATTGCAACACTA 57.054 42.857 0.00 0.46 0.00 2.74
143 144 3.581755 TCGTAGACCATTGCAACACTAC 58.418 45.455 0.00 11.78 0.00 2.73
144 145 3.006003 TCGTAGACCATTGCAACACTACA 59.994 43.478 21.98 13.09 33.05 2.74
145 146 3.122948 CGTAGACCATTGCAACACTACAC 59.877 47.826 21.98 10.45 33.05 2.90
146 147 3.207265 AGACCATTGCAACACTACACA 57.793 42.857 0.00 0.00 0.00 3.72
147 148 3.754965 AGACCATTGCAACACTACACAT 58.245 40.909 0.00 0.00 0.00 3.21
148 149 3.503363 AGACCATTGCAACACTACACATG 59.497 43.478 0.00 0.00 0.00 3.21
149 150 3.221771 ACCATTGCAACACTACACATGT 58.778 40.909 0.00 0.00 0.00 3.21
150 151 3.636300 ACCATTGCAACACTACACATGTT 59.364 39.130 0.00 0.00 40.95 2.71
151 152 4.099266 ACCATTGCAACACTACACATGTTT 59.901 37.500 0.00 0.00 38.22 2.83
152 153 4.681025 CCATTGCAACACTACACATGTTTC 59.319 41.667 0.00 0.00 38.22 2.78
153 154 4.972514 TTGCAACACTACACATGTTTCA 57.027 36.364 0.00 0.00 38.22 2.69
154 155 4.972514 TGCAACACTACACATGTTTCAA 57.027 36.364 0.00 0.00 38.22 2.69
155 156 5.316327 TGCAACACTACACATGTTTCAAA 57.684 34.783 0.00 0.00 38.22 2.69
156 157 5.714047 TGCAACACTACACATGTTTCAAAA 58.286 33.333 0.00 0.00 38.22 2.44
157 158 6.159293 TGCAACACTACACATGTTTCAAAAA 58.841 32.000 0.00 0.00 38.22 1.94
158 159 6.090088 TGCAACACTACACATGTTTCAAAAAC 59.910 34.615 0.00 0.00 38.22 2.43
159 160 6.090088 GCAACACTACACATGTTTCAAAAACA 59.910 34.615 7.63 7.63 38.22 2.83
160 161 7.201513 GCAACACTACACATGTTTCAAAAACAT 60.202 33.333 11.29 11.29 38.22 2.71
161 162 9.295214 CAACACTACACATGTTTCAAAAACATA 57.705 29.630 15.50 2.70 38.22 2.29
162 163 9.515020 AACACTACACATGTTTCAAAAACATAG 57.485 29.630 15.50 12.30 38.69 2.23
163 164 7.647715 ACACTACACATGTTTCAAAAACATAGC 59.352 33.333 15.50 0.00 38.69 2.97
164 165 7.862372 CACTACACATGTTTCAAAAACATAGCT 59.138 33.333 15.50 0.00 38.69 3.32
165 166 8.076178 ACTACACATGTTTCAAAAACATAGCTC 58.924 33.333 15.50 0.00 38.69 4.09
166 167 6.215845 ACACATGTTTCAAAAACATAGCTCC 58.784 36.000 15.50 0.00 38.69 4.70
167 168 5.343058 CACATGTTTCAAAAACATAGCTCCG 59.657 40.000 15.50 7.08 38.69 4.63
168 169 4.497473 TGTTTCAAAAACATAGCTCCGG 57.503 40.909 0.00 0.00 0.00 5.14
169 170 3.886505 TGTTTCAAAAACATAGCTCCGGT 59.113 39.130 0.00 0.00 0.00 5.28
170 171 4.339814 TGTTTCAAAAACATAGCTCCGGTT 59.660 37.500 0.00 0.00 0.00 4.44
171 172 4.497473 TTCAAAAACATAGCTCCGGTTG 57.503 40.909 0.00 0.00 0.00 3.77
172 173 2.227865 TCAAAAACATAGCTCCGGTTGC 59.772 45.455 12.89 12.89 0.00 4.17
173 174 1.904287 AAAACATAGCTCCGGTTGCA 58.096 45.000 20.41 9.72 0.00 4.08
174 175 1.904287 AAACATAGCTCCGGTTGCAA 58.096 45.000 20.41 0.00 0.00 4.08
175 176 1.904287 AACATAGCTCCGGTTGCAAA 58.096 45.000 20.41 10.88 0.00 3.68
176 177 1.904287 ACATAGCTCCGGTTGCAAAA 58.096 45.000 20.41 8.87 0.00 2.44
177 178 1.812571 ACATAGCTCCGGTTGCAAAAG 59.187 47.619 20.41 0.00 0.00 2.27
178 179 0.811281 ATAGCTCCGGTTGCAAAAGC 59.189 50.000 20.41 12.06 0.00 3.51
179 180 1.573829 TAGCTCCGGTTGCAAAAGCG 61.574 55.000 20.41 0.91 42.62 4.68
180 181 2.429069 CTCCGGTTGCAAAAGCGC 60.429 61.111 0.00 0.00 41.75 5.92
181 182 4.320928 TCCGGTTGCAAAAGCGCG 62.321 61.111 0.00 0.00 41.75 6.86
182 183 4.622456 CCGGTTGCAAAAGCGCGT 62.622 61.111 8.43 0.00 41.75 6.01
183 184 2.653766 CGGTTGCAAAAGCGCGTT 60.654 55.556 8.43 1.67 36.85 4.84
184 185 2.635305 CGGTTGCAAAAGCGCGTTC 61.635 57.895 9.50 0.00 36.85 3.95
185 186 2.635305 GGTTGCAAAAGCGCGTTCG 61.635 57.895 9.50 0.00 39.07 3.95
186 187 1.652930 GTTGCAAAAGCGCGTTCGA 60.653 52.632 9.50 0.00 38.10 3.71
187 188 1.368731 TTGCAAAAGCGCGTTCGAG 60.369 52.632 9.50 3.99 38.10 4.04
188 189 2.042520 TTGCAAAAGCGCGTTCGAGT 62.043 50.000 9.50 0.00 38.10 4.18
189 190 2.069277 GCAAAAGCGCGTTCGAGTG 61.069 57.895 9.50 5.05 38.10 3.51
197 198 4.052229 CGTTCGAGTGCGGGGTCT 62.052 66.667 0.00 0.00 38.28 3.85
198 199 2.126031 GTTCGAGTGCGGGGTCTC 60.126 66.667 0.00 0.00 38.28 3.36
199 200 2.599281 TTCGAGTGCGGGGTCTCA 60.599 61.111 0.00 0.00 38.28 3.27
200 201 2.927580 TTCGAGTGCGGGGTCTCAC 61.928 63.158 0.00 0.00 38.28 3.51
201 202 3.374402 CGAGTGCGGGGTCTCACT 61.374 66.667 0.00 0.00 45.32 3.41
202 203 2.932234 CGAGTGCGGGGTCTCACTT 61.932 63.158 0.00 0.00 42.97 3.16
203 204 1.374758 GAGTGCGGGGTCTCACTTG 60.375 63.158 0.00 0.00 42.97 3.16
204 205 1.816863 GAGTGCGGGGTCTCACTTGA 61.817 60.000 0.00 0.00 42.97 3.02
205 206 1.070786 GTGCGGGGTCTCACTTGAA 59.929 57.895 0.00 0.00 0.00 2.69
206 207 1.070786 TGCGGGGTCTCACTTGAAC 59.929 57.895 0.00 0.00 0.00 3.18
207 208 1.070786 GCGGGGTCTCACTTGAACA 59.929 57.895 0.00 0.00 0.00 3.18
208 209 1.228657 GCGGGGTCTCACTTGAACAC 61.229 60.000 0.00 0.00 0.00 3.32
209 210 0.944311 CGGGGTCTCACTTGAACACG 60.944 60.000 0.00 0.00 44.28 4.49
210 211 0.106149 GGGGTCTCACTTGAACACGT 59.894 55.000 0.00 0.00 0.00 4.49
211 212 1.217882 GGGTCTCACTTGAACACGTG 58.782 55.000 15.48 15.48 32.55 4.49
212 213 1.472728 GGGTCTCACTTGAACACGTGT 60.473 52.381 17.22 17.22 33.02 4.49
213 214 2.223876 GGGTCTCACTTGAACACGTGTA 60.224 50.000 23.69 3.90 33.02 2.90
214 215 3.450578 GGTCTCACTTGAACACGTGTAA 58.549 45.455 23.69 12.74 33.02 2.41
215 216 3.244579 GGTCTCACTTGAACACGTGTAAC 59.755 47.826 23.69 18.86 33.02 2.50
216 217 3.861113 GTCTCACTTGAACACGTGTAACA 59.139 43.478 23.69 21.20 35.74 2.41
217 218 4.506654 GTCTCACTTGAACACGTGTAACAT 59.493 41.667 23.69 5.85 35.74 2.71
218 219 5.688621 GTCTCACTTGAACACGTGTAACATA 59.311 40.000 23.69 13.71 35.74 2.29
219 220 5.918576 TCTCACTTGAACACGTGTAACATAG 59.081 40.000 23.69 21.87 35.74 2.23
220 221 4.986034 TCACTTGAACACGTGTAACATAGG 59.014 41.667 23.69 17.67 35.74 2.57
221 222 4.151689 CACTTGAACACGTGTAACATAGGG 59.848 45.833 23.69 18.88 35.74 3.53
222 223 3.322211 TGAACACGTGTAACATAGGGG 57.678 47.619 23.69 0.00 35.74 4.79
223 224 2.898612 TGAACACGTGTAACATAGGGGA 59.101 45.455 23.69 0.00 35.74 4.81
224 225 3.056393 TGAACACGTGTAACATAGGGGAG 60.056 47.826 23.69 0.00 35.74 4.30
225 226 1.829222 ACACGTGTAACATAGGGGAGG 59.171 52.381 21.98 0.00 35.74 4.30
226 227 1.829222 CACGTGTAACATAGGGGAGGT 59.171 52.381 7.58 0.00 35.74 3.85
227 228 1.829222 ACGTGTAACATAGGGGAGGTG 59.171 52.381 0.00 0.00 35.74 4.00
228 229 1.138266 CGTGTAACATAGGGGAGGTGG 59.862 57.143 0.00 0.00 35.74 4.61
229 230 1.134189 GTGTAACATAGGGGAGGTGGC 60.134 57.143 0.00 0.00 36.32 5.01
230 231 0.106149 GTAACATAGGGGAGGTGGCG 59.894 60.000 0.00 0.00 0.00 5.69
231 232 1.052124 TAACATAGGGGAGGTGGCGG 61.052 60.000 0.00 0.00 0.00 6.13
232 233 2.445845 CATAGGGGAGGTGGCGGA 60.446 66.667 0.00 0.00 0.00 5.54
233 234 2.446036 ATAGGGGAGGTGGCGGAC 60.446 66.667 0.00 0.00 0.00 4.79
256 257 3.499737 GCTGCGATCCACCGGTTG 61.500 66.667 2.97 0.00 0.00 3.77
257 258 2.264480 CTGCGATCCACCGGTTGA 59.736 61.111 11.29 11.29 0.00 3.18
258 259 1.153369 CTGCGATCCACCGGTTGAT 60.153 57.895 20.45 20.45 0.00 2.57
259 260 1.153449 TGCGATCCACCGGTTGATC 60.153 57.895 29.96 29.96 35.19 2.92
263 264 2.589798 GATCCACCGGTTGATCGTAA 57.410 50.000 27.34 0.00 0.00 3.18
264 265 2.470821 GATCCACCGGTTGATCGTAAG 58.529 52.381 27.34 4.46 0.00 2.34
284 285 8.370182 TCGTAAGAGTTTCCCATTATATAACCC 58.630 37.037 0.00 0.00 45.01 4.11
285 286 7.330208 CGTAAGAGTTTCCCATTATATAACCCG 59.670 40.741 0.00 0.00 43.02 5.28
286 287 6.758806 AGAGTTTCCCATTATATAACCCGT 57.241 37.500 0.00 0.00 0.00 5.28
287 288 7.145474 AGAGTTTCCCATTATATAACCCGTT 57.855 36.000 0.00 0.00 0.00 4.44
288 289 7.222161 AGAGTTTCCCATTATATAACCCGTTC 58.778 38.462 0.00 0.00 0.00 3.95
289 290 6.301486 AGTTTCCCATTATATAACCCGTTCC 58.699 40.000 0.00 0.00 0.00 3.62
290 291 4.914177 TCCCATTATATAACCCGTTCCC 57.086 45.455 0.00 0.00 0.00 3.97
291 292 3.588396 TCCCATTATATAACCCGTTCCCC 59.412 47.826 0.00 0.00 0.00 4.81
292 293 3.590182 CCCATTATATAACCCGTTCCCCT 59.410 47.826 0.00 0.00 0.00 4.79
293 294 4.043686 CCCATTATATAACCCGTTCCCCTT 59.956 45.833 0.00 0.00 0.00 3.95
294 295 5.458508 CCCATTATATAACCCGTTCCCCTTT 60.459 44.000 0.00 0.00 0.00 3.11
295 296 6.072649 CCATTATATAACCCGTTCCCCTTTT 58.927 40.000 0.00 0.00 0.00 2.27
296 297 7.232910 CCATTATATAACCCGTTCCCCTTTTA 58.767 38.462 0.00 0.00 0.00 1.52
297 298 7.175467 CCATTATATAACCCGTTCCCCTTTTAC 59.825 40.741 0.00 0.00 0.00 2.01
298 299 5.713760 ATATAACCCGTTCCCCTTTTACA 57.286 39.130 0.00 0.00 0.00 2.41
299 300 2.752075 AACCCGTTCCCCTTTTACAA 57.248 45.000 0.00 0.00 0.00 2.41
300 301 1.985473 ACCCGTTCCCCTTTTACAAC 58.015 50.000 0.00 0.00 0.00 3.32
301 302 1.496001 ACCCGTTCCCCTTTTACAACT 59.504 47.619 0.00 0.00 0.00 3.16
302 303 2.091720 ACCCGTTCCCCTTTTACAACTT 60.092 45.455 0.00 0.00 0.00 2.66
303 304 2.555325 CCCGTTCCCCTTTTACAACTTC 59.445 50.000 0.00 0.00 0.00 3.01
304 305 3.215975 CCGTTCCCCTTTTACAACTTCA 58.784 45.455 0.00 0.00 0.00 3.02
305 306 3.824443 CCGTTCCCCTTTTACAACTTCAT 59.176 43.478 0.00 0.00 0.00 2.57
306 307 4.320935 CCGTTCCCCTTTTACAACTTCATG 60.321 45.833 0.00 0.00 0.00 3.07
307 308 4.277423 CGTTCCCCTTTTACAACTTCATGT 59.723 41.667 0.00 0.00 37.32 3.21
308 309 5.470777 CGTTCCCCTTTTACAACTTCATGTA 59.529 40.000 0.00 0.00 34.75 2.29
309 310 6.150474 CGTTCCCCTTTTACAACTTCATGTAT 59.850 38.462 0.00 0.00 35.80 2.29
310 311 7.312899 GTTCCCCTTTTACAACTTCATGTATG 58.687 38.462 0.00 0.00 35.80 2.39
311 312 6.785076 TCCCCTTTTACAACTTCATGTATGA 58.215 36.000 0.00 0.00 35.80 2.15
312 313 7.235079 TCCCCTTTTACAACTTCATGTATGAA 58.765 34.615 7.06 7.06 43.94 2.57
313 314 7.893302 TCCCCTTTTACAACTTCATGTATGAAT 59.107 33.333 7.67 0.00 44.92 2.57
314 315 9.184523 CCCCTTTTACAACTTCATGTATGAATA 57.815 33.333 7.67 0.00 44.92 1.75
321 322 8.506168 ACAACTTCATGTATGAATAATTCGGT 57.494 30.769 7.67 0.00 44.92 4.69
322 323 8.612619 ACAACTTCATGTATGAATAATTCGGTC 58.387 33.333 7.67 0.00 44.92 4.79
323 324 7.730364 ACTTCATGTATGAATAATTCGGTCC 57.270 36.000 7.67 0.00 44.92 4.46
324 325 7.509546 ACTTCATGTATGAATAATTCGGTCCT 58.490 34.615 7.67 0.00 44.92 3.85
325 326 8.647796 ACTTCATGTATGAATAATTCGGTCCTA 58.352 33.333 7.67 0.00 44.92 2.94
326 327 9.144747 CTTCATGTATGAATAATTCGGTCCTAG 57.855 37.037 7.67 0.00 44.92 3.02
327 328 8.190326 TCATGTATGAATAATTCGGTCCTAGT 57.810 34.615 0.00 0.00 33.08 2.57
328 329 8.088365 TCATGTATGAATAATTCGGTCCTAGTG 58.912 37.037 0.00 0.00 33.08 2.74
329 330 7.356089 TGTATGAATAATTCGGTCCTAGTGT 57.644 36.000 0.00 0.00 0.00 3.55
330 331 7.207383 TGTATGAATAATTCGGTCCTAGTGTG 58.793 38.462 0.00 0.00 0.00 3.82
331 332 5.670792 TGAATAATTCGGTCCTAGTGTGT 57.329 39.130 0.00 0.00 0.00 3.72
332 333 6.778834 TGAATAATTCGGTCCTAGTGTGTA 57.221 37.500 0.00 0.00 0.00 2.90
333 334 6.802608 TGAATAATTCGGTCCTAGTGTGTAG 58.197 40.000 0.00 0.00 0.00 2.74
334 335 6.604396 TGAATAATTCGGTCCTAGTGTGTAGA 59.396 38.462 0.00 0.00 0.00 2.59
335 336 7.123098 TGAATAATTCGGTCCTAGTGTGTAGAA 59.877 37.037 0.00 0.00 0.00 2.10
336 337 5.934402 AATTCGGTCCTAGTGTGTAGAAT 57.066 39.130 0.00 0.00 0.00 2.40
337 338 5.934402 ATTCGGTCCTAGTGTGTAGAATT 57.066 39.130 0.00 0.00 0.00 2.17
338 339 4.713824 TCGGTCCTAGTGTGTAGAATTG 57.286 45.455 0.00 0.00 0.00 2.32
339 340 4.084287 TCGGTCCTAGTGTGTAGAATTGT 58.916 43.478 0.00 0.00 0.00 2.71
340 341 4.082408 TCGGTCCTAGTGTGTAGAATTGTG 60.082 45.833 0.00 0.00 0.00 3.33
341 342 4.504858 GGTCCTAGTGTGTAGAATTGTGG 58.495 47.826 0.00 0.00 0.00 4.17
342 343 4.020485 GGTCCTAGTGTGTAGAATTGTGGT 60.020 45.833 0.00 0.00 0.00 4.16
343 344 5.512576 GGTCCTAGTGTGTAGAATTGTGGTT 60.513 44.000 0.00 0.00 0.00 3.67
344 345 5.995897 GTCCTAGTGTGTAGAATTGTGGTTT 59.004 40.000 0.00 0.00 0.00 3.27
345 346 6.147328 GTCCTAGTGTGTAGAATTGTGGTTTC 59.853 42.308 0.00 0.00 0.00 2.78
346 347 5.411669 CCTAGTGTGTAGAATTGTGGTTTCC 59.588 44.000 0.00 0.00 0.00 3.13
347 348 5.048846 AGTGTGTAGAATTGTGGTTTCCT 57.951 39.130 0.00 0.00 0.00 3.36
348 349 4.821805 AGTGTGTAGAATTGTGGTTTCCTG 59.178 41.667 0.00 0.00 0.00 3.86
349 350 4.819630 GTGTGTAGAATTGTGGTTTCCTGA 59.180 41.667 0.00 0.00 0.00 3.86
350 351 5.049405 GTGTGTAGAATTGTGGTTTCCTGAG 60.049 44.000 0.00 0.00 0.00 3.35
351 352 4.072131 TGTAGAATTGTGGTTTCCTGAGC 58.928 43.478 0.00 0.00 0.00 4.26
352 353 3.228188 AGAATTGTGGTTTCCTGAGCA 57.772 42.857 0.00 0.00 0.00 4.26
353 354 3.152341 AGAATTGTGGTTTCCTGAGCAG 58.848 45.455 0.00 0.00 0.00 4.24
354 355 2.664402 ATTGTGGTTTCCTGAGCAGT 57.336 45.000 0.00 0.00 0.00 4.40
355 356 1.679139 TTGTGGTTTCCTGAGCAGTG 58.321 50.000 0.00 0.00 0.00 3.66
356 357 0.546122 TGTGGTTTCCTGAGCAGTGT 59.454 50.000 0.00 0.00 0.00 3.55
357 358 1.765904 TGTGGTTTCCTGAGCAGTGTA 59.234 47.619 0.00 0.00 0.00 2.90
358 359 2.371841 TGTGGTTTCCTGAGCAGTGTAT 59.628 45.455 0.00 0.00 0.00 2.29
359 360 2.744202 GTGGTTTCCTGAGCAGTGTATG 59.256 50.000 0.00 0.00 0.00 2.39
360 361 2.290260 TGGTTTCCTGAGCAGTGTATGG 60.290 50.000 0.00 0.00 0.00 2.74
361 362 2.290323 GGTTTCCTGAGCAGTGTATGGT 60.290 50.000 0.00 0.00 44.02 3.55
362 363 2.744202 GTTTCCTGAGCAGTGTATGGTG 59.256 50.000 0.00 0.00 40.53 4.17
363 364 1.644509 TCCTGAGCAGTGTATGGTGT 58.355 50.000 0.00 0.00 40.53 4.16
364 365 1.276138 TCCTGAGCAGTGTATGGTGTG 59.724 52.381 0.00 0.00 40.53 3.82
365 366 1.081892 CTGAGCAGTGTATGGTGTGC 58.918 55.000 0.00 0.00 40.53 4.57
366 367 0.396060 TGAGCAGTGTATGGTGTGCA 59.604 50.000 0.00 0.00 40.53 4.57
367 368 1.081892 GAGCAGTGTATGGTGTGCAG 58.918 55.000 0.00 0.00 40.53 4.41
368 369 0.397941 AGCAGTGTATGGTGTGCAGT 59.602 50.000 0.00 0.00 38.49 4.40
369 370 1.202806 AGCAGTGTATGGTGTGCAGTT 60.203 47.619 0.00 0.00 38.49 3.16
370 371 1.608590 GCAGTGTATGGTGTGCAGTTT 59.391 47.619 0.00 0.00 35.91 2.66
371 372 2.034558 GCAGTGTATGGTGTGCAGTTTT 59.965 45.455 0.00 0.00 35.91 2.43
372 373 3.853307 GCAGTGTATGGTGTGCAGTTTTC 60.853 47.826 0.00 0.00 35.91 2.29
373 374 3.565482 CAGTGTATGGTGTGCAGTTTTCT 59.435 43.478 0.00 0.00 0.00 2.52
374 375 4.036734 CAGTGTATGGTGTGCAGTTTTCTT 59.963 41.667 0.00 0.00 0.00 2.52
375 376 5.238432 CAGTGTATGGTGTGCAGTTTTCTTA 59.762 40.000 0.00 0.00 0.00 2.10
376 377 5.825679 AGTGTATGGTGTGCAGTTTTCTTAA 59.174 36.000 0.00 0.00 0.00 1.85
377 378 6.490040 AGTGTATGGTGTGCAGTTTTCTTAAT 59.510 34.615 0.00 0.00 0.00 1.40
378 379 6.582295 GTGTATGGTGTGCAGTTTTCTTAATG 59.418 38.462 0.00 0.00 0.00 1.90
379 380 4.582701 TGGTGTGCAGTTTTCTTAATGG 57.417 40.909 0.00 0.00 0.00 3.16
380 381 3.243704 TGGTGTGCAGTTTTCTTAATGGC 60.244 43.478 0.00 0.00 0.00 4.40
381 382 3.005791 GGTGTGCAGTTTTCTTAATGGCT 59.994 43.478 0.00 0.00 0.00 4.75
382 383 3.983344 GTGTGCAGTTTTCTTAATGGCTG 59.017 43.478 0.00 0.00 0.00 4.85
383 384 3.636300 TGTGCAGTTTTCTTAATGGCTGT 59.364 39.130 0.00 0.00 0.00 4.40
384 385 4.099266 TGTGCAGTTTTCTTAATGGCTGTT 59.901 37.500 0.00 0.00 0.00 3.16
385 386 5.049828 GTGCAGTTTTCTTAATGGCTGTTT 58.950 37.500 0.00 0.00 0.00 2.83
386 387 5.049167 TGCAGTTTTCTTAATGGCTGTTTG 58.951 37.500 0.00 0.00 0.00 2.93
387 388 5.049828 GCAGTTTTCTTAATGGCTGTTTGT 58.950 37.500 0.00 0.00 0.00 2.83
388 389 5.050837 GCAGTTTTCTTAATGGCTGTTTGTG 60.051 40.000 0.00 0.00 0.00 3.33
389 390 6.272318 CAGTTTTCTTAATGGCTGTTTGTGA 58.728 36.000 0.00 0.00 0.00 3.58
390 391 6.418819 CAGTTTTCTTAATGGCTGTTTGTGAG 59.581 38.462 0.00 0.00 0.00 3.51
391 392 6.096846 AGTTTTCTTAATGGCTGTTTGTGAGT 59.903 34.615 0.00 0.00 0.00 3.41
392 393 6.463995 TTTCTTAATGGCTGTTTGTGAGTT 57.536 33.333 0.00 0.00 0.00 3.01
393 394 6.463995 TTCTTAATGGCTGTTTGTGAGTTT 57.536 33.333 0.00 0.00 0.00 2.66
394 395 6.072112 TCTTAATGGCTGTTTGTGAGTTTC 57.928 37.500 0.00 0.00 0.00 2.78
395 396 5.827797 TCTTAATGGCTGTTTGTGAGTTTCT 59.172 36.000 0.00 0.00 0.00 2.52
396 397 6.995686 TCTTAATGGCTGTTTGTGAGTTTCTA 59.004 34.615 0.00 0.00 0.00 2.10
397 398 7.500892 TCTTAATGGCTGTTTGTGAGTTTCTAA 59.499 33.333 0.00 0.00 0.00 2.10
398 399 6.655078 AATGGCTGTTTGTGAGTTTCTAAT 57.345 33.333 0.00 0.00 0.00 1.73
399 400 6.655078 ATGGCTGTTTGTGAGTTTCTAATT 57.345 33.333 0.00 0.00 0.00 1.40
400 401 6.463995 TGGCTGTTTGTGAGTTTCTAATTT 57.536 33.333 0.00 0.00 0.00 1.82
401 402 6.872920 TGGCTGTTTGTGAGTTTCTAATTTT 58.127 32.000 0.00 0.00 0.00 1.82
402 403 6.978080 TGGCTGTTTGTGAGTTTCTAATTTTC 59.022 34.615 0.00 0.00 0.00 2.29
403 404 7.147915 TGGCTGTTTGTGAGTTTCTAATTTTCT 60.148 33.333 0.00 0.00 0.00 2.52
404 405 8.349983 GGCTGTTTGTGAGTTTCTAATTTTCTA 58.650 33.333 0.00 0.00 0.00 2.10
405 406 9.899226 GCTGTTTGTGAGTTTCTAATTTTCTAT 57.101 29.630 0.00 0.00 0.00 1.98
430 431 7.881775 ATTCCTATTTTCGGATACTTTGCTT 57.118 32.000 0.00 0.00 0.00 3.91
431 432 6.920569 TCCTATTTTCGGATACTTTGCTTC 57.079 37.500 0.00 0.00 0.00 3.86
432 433 6.650120 TCCTATTTTCGGATACTTTGCTTCT 58.350 36.000 0.00 0.00 0.00 2.85
433 434 7.110155 TCCTATTTTCGGATACTTTGCTTCTT 58.890 34.615 0.00 0.00 0.00 2.52
434 435 7.610305 TCCTATTTTCGGATACTTTGCTTCTTT 59.390 33.333 0.00 0.00 0.00 2.52
435 436 7.910683 CCTATTTTCGGATACTTTGCTTCTTTC 59.089 37.037 0.00 0.00 0.00 2.62
436 437 6.877611 TTTTCGGATACTTTGCTTCTTTCT 57.122 33.333 0.00 0.00 0.00 2.52
437 438 7.972832 TTTTCGGATACTTTGCTTCTTTCTA 57.027 32.000 0.00 0.00 0.00 2.10
438 439 7.972832 TTTCGGATACTTTGCTTCTTTCTAA 57.027 32.000 0.00 0.00 0.00 2.10
439 440 7.972832 TTCGGATACTTTGCTTCTTTCTAAA 57.027 32.000 0.00 0.00 0.00 1.85
440 441 8.561738 TTCGGATACTTTGCTTCTTTCTAAAT 57.438 30.769 0.00 0.00 0.00 1.40
441 442 8.197988 TCGGATACTTTGCTTCTTTCTAAATC 57.802 34.615 0.00 0.00 0.00 2.17
442 443 7.010183 TCGGATACTTTGCTTCTTTCTAAATCG 59.990 37.037 0.00 0.00 0.00 3.34
443 444 7.010183 CGGATACTTTGCTTCTTTCTAAATCGA 59.990 37.037 0.00 0.00 0.00 3.59
444 445 8.331742 GGATACTTTGCTTCTTTCTAAATCGAG 58.668 37.037 0.00 0.00 0.00 4.04
445 446 8.779354 ATACTTTGCTTCTTTCTAAATCGAGT 57.221 30.769 0.00 0.00 0.00 4.18
446 447 7.123160 ACTTTGCTTCTTTCTAAATCGAGTC 57.877 36.000 0.00 0.00 0.00 3.36
447 448 5.763444 TTGCTTCTTTCTAAATCGAGTCG 57.237 39.130 6.09 6.09 0.00 4.18
448 449 3.612860 TGCTTCTTTCTAAATCGAGTCGC 59.387 43.478 7.92 0.00 0.00 5.19
449 450 3.860536 GCTTCTTTCTAAATCGAGTCGCT 59.139 43.478 7.92 0.00 0.00 4.93
450 451 4.327627 GCTTCTTTCTAAATCGAGTCGCTT 59.672 41.667 7.92 0.67 0.00 4.68
451 452 5.722592 GCTTCTTTCTAAATCGAGTCGCTTG 60.723 44.000 7.92 0.00 0.00 4.01
452 453 3.612860 TCTTTCTAAATCGAGTCGCTTGC 59.387 43.478 7.92 0.00 0.00 4.01
453 454 1.922570 TCTAAATCGAGTCGCTTGCC 58.077 50.000 7.92 0.00 0.00 4.52
463 464 0.099436 GTCGCTTGCCATCCAACATC 59.901 55.000 0.00 0.00 0.00 3.06
464 465 0.322366 TCGCTTGCCATCCAACATCA 60.322 50.000 0.00 0.00 0.00 3.07
478 479 7.493320 CCATCCAACATCAATGAAAAGGTTATG 59.507 37.037 0.00 0.00 0.00 1.90
485 486 9.425248 ACATCAATGAAAAGGTTATGTGGATAT 57.575 29.630 0.00 0.00 0.00 1.63
488 489 8.620416 TCAATGAAAAGGTTATGTGGATATTCG 58.380 33.333 0.00 0.00 0.00 3.34
489 490 8.405531 CAATGAAAAGGTTATGTGGATATTCGT 58.594 33.333 0.00 0.00 0.00 3.85
490 491 9.621629 AATGAAAAGGTTATGTGGATATTCGTA 57.378 29.630 0.00 0.00 0.00 3.43
491 492 9.793259 ATGAAAAGGTTATGTGGATATTCGTAT 57.207 29.630 0.00 0.00 0.00 3.06
525 526 4.778534 AAGAATCCATCAGCACAACAAG 57.221 40.909 0.00 0.00 0.00 3.16
540 541 2.568090 AAGGCGCGCATTTCCTTG 59.432 55.556 34.42 0.00 38.66 3.61
546 547 0.247814 CGCGCATTTCCTTGTAGCTG 60.248 55.000 8.75 0.00 0.00 4.24
547 548 0.099436 GCGCATTTCCTTGTAGCTGG 59.901 55.000 0.30 0.00 0.00 4.85
550 551 2.162681 GCATTTCCTTGTAGCTGGTGT 58.837 47.619 0.00 0.00 0.00 4.16
571 576 6.403636 GGTGTTTCATCTATGAGAATTTGCGT 60.404 38.462 0.00 0.00 38.19 5.24
575 580 7.841915 TTCATCTATGAGAATTTGCGTGTAA 57.158 32.000 0.00 0.00 38.19 2.41
577 582 8.076714 TCATCTATGAGAATTTGCGTGTAATC 57.923 34.615 0.00 0.00 32.11 1.75
616 621 1.286305 ACCCCGGATGGCCTTTGTAT 61.286 55.000 0.73 0.00 0.00 2.29
622 627 2.587522 GGATGGCCTTTGTATCCCTTC 58.412 52.381 3.32 0.00 35.43 3.46
639 644 6.494893 TCCCTTCGAACATTTTGATTAGTG 57.505 37.500 0.00 0.00 0.00 2.74
644 651 8.131100 CCTTCGAACATTTTGATTAGTGCATAT 58.869 33.333 0.00 0.00 0.00 1.78
650 657 7.205297 ACATTTTGATTAGTGCATATTGAGCC 58.795 34.615 0.00 0.00 0.00 4.70
656 663 3.037431 AGTGCATATTGAGCCGATCTC 57.963 47.619 0.00 0.00 42.23 2.75
766 776 1.157870 AGTGCGTTGTCCTTCGTTGG 61.158 55.000 0.00 0.00 0.00 3.77
769 779 2.943653 GTTGTCCTTCGTTGGCCG 59.056 61.111 0.00 0.00 38.13 6.13
855 868 1.883084 CAAGCATCGGACCCTACGC 60.883 63.158 0.00 0.00 0.00 4.42
856 869 2.355986 AAGCATCGGACCCTACGCA 61.356 57.895 0.00 0.00 0.00 5.24
965 985 1.566018 GACACGAAACCAGCTTCCCG 61.566 60.000 0.00 0.00 0.00 5.14
1130 1154 1.017387 GGTAAGCAAAGCATCCTCGG 58.983 55.000 0.00 0.00 0.00 4.63
1133 1157 4.543084 GCAAAGCATCCTCGGCGC 62.543 66.667 0.00 0.00 36.08 6.53
1136 1160 4.845580 AAGCATCCTCGGCGCTGG 62.846 66.667 17.88 12.16 35.79 4.85
1140 1164 3.077556 ATCCTCGGCGCTGGTTCT 61.078 61.111 17.88 0.00 0.00 3.01
1141 1165 2.660064 ATCCTCGGCGCTGGTTCTT 61.660 57.895 17.88 0.00 0.00 2.52
1142 1166 2.185310 ATCCTCGGCGCTGGTTCTTT 62.185 55.000 17.88 0.00 0.00 2.52
1144 1168 1.374758 CTCGGCGCTGGTTCTTTCT 60.375 57.895 17.88 0.00 0.00 2.52
1147 1171 1.630244 CGGCGCTGGTTCTTTCTGAG 61.630 60.000 8.83 0.00 0.00 3.35
1148 1172 0.320771 GGCGCTGGTTCTTTCTGAGA 60.321 55.000 7.64 0.00 0.00 3.27
1149 1173 1.677217 GGCGCTGGTTCTTTCTGAGAT 60.677 52.381 7.64 0.00 33.49 2.75
1150 1174 1.663135 GCGCTGGTTCTTTCTGAGATC 59.337 52.381 0.00 0.00 33.49 2.75
1216 1276 0.528466 TGACAAGGATGCGATCGAGC 60.528 55.000 21.57 6.78 37.71 5.03
1438 1498 2.897780 GAGCTGCTCGTCATCATCC 58.102 57.895 14.68 0.00 0.00 3.51
1507 1567 3.785499 TCGACGTCGAGAGCACGG 61.785 66.667 34.97 5.74 44.22 4.94
1508 1568 3.785499 CGACGTCGAGAGCACGGA 61.785 66.667 33.35 0.00 43.02 4.69
1509 1569 2.202324 GACGTCGAGAGCACGGAC 60.202 66.667 0.00 0.00 38.38 4.79
1740 1812 2.546645 TAATCACGGACGTGGCGGTC 62.547 60.000 22.71 0.30 45.43 4.79
1917 1989 2.104331 GTCGACATCCCGTGCGAT 59.896 61.111 11.55 0.00 38.16 4.58
2067 2139 4.135153 CCACCGCTCACCGAGGAG 62.135 72.222 0.00 0.00 40.02 3.69
2073 2145 2.363018 CTCACCGAGGAGCCTCCA 60.363 66.667 14.46 0.00 39.61 3.86
2074 2146 2.363018 TCACCGAGGAGCCTCCAG 60.363 66.667 14.46 6.39 39.61 3.86
2075 2147 4.154347 CACCGAGGAGCCTCCAGC 62.154 72.222 14.46 3.42 39.61 4.85
2085 2157 4.436998 CCTCCAGCACCGGTCGAC 62.437 72.222 2.59 7.13 0.00 4.20
2086 2158 4.436998 CTCCAGCACCGGTCGACC 62.437 72.222 25.28 25.28 0.00 4.79
2186 2276 2.506472 GGTTGAGGATCCTCCGGC 59.494 66.667 34.05 23.71 42.75 6.13
2187 2277 2.367202 GGTTGAGGATCCTCCGGCA 61.367 63.158 34.05 17.08 42.75 5.69
2232 2322 4.856801 CCCATGGAGGAACCGCCG 62.857 72.222 15.22 0.00 43.43 6.46
2238 2328 4.452733 GAGGAACCGCCGGTGGAG 62.453 72.222 40.02 15.66 43.43 3.86
2453 2772 2.047655 CGCAGGTCAACCCGCTTA 60.048 61.111 5.88 0.00 38.74 3.09
2512 2831 1.002134 ATTGGTTGAGGAGCCACCG 60.002 57.895 0.00 0.00 44.74 4.94
2633 2952 4.841617 AGGATCCTCCGGCAGCGA 62.842 66.667 9.02 0.00 42.75 4.93
2725 3059 3.058160 GCGCATGAGCCACAACCT 61.058 61.111 10.72 0.00 37.52 3.50
2727 3061 1.968017 CGCATGAGCCACAACCTGT 60.968 57.895 0.00 0.00 37.52 4.00
2800 3134 3.918294 TCTGATGGCAGTGATGAATCA 57.082 42.857 0.00 0.00 42.84 2.57
2812 3146 3.812053 GTGATGAATCAGATGGTAGCACC 59.188 47.826 0.00 0.00 37.51 5.01
2814 3148 1.138859 TGAATCAGATGGTAGCACCGG 59.861 52.381 0.00 0.00 42.58 5.28
2817 3151 0.613572 TCAGATGGTAGCACCGGTGA 60.614 55.000 38.30 17.51 42.58 4.02
2911 3245 3.353836 CGTGGCAGGTTCCCGTTG 61.354 66.667 0.00 0.00 0.00 4.10
2950 3284 2.006056 GCTGTGATCTTGCTCGCTCTT 61.006 52.381 0.00 0.00 0.00 2.85
3000 3334 0.250124 CAGGGCGGCGGTTGATTATA 60.250 55.000 9.78 0.00 0.00 0.98
3003 3337 1.429463 GGCGGCGGTTGATTATAGAG 58.571 55.000 9.78 0.00 0.00 2.43
3017 3351 1.392710 ATAGAGGTGGTTCGGCTCGG 61.393 60.000 0.00 0.00 0.00 4.63
3100 3439 5.047188 TGGCACCGAATTCTTTTTCTTTTC 58.953 37.500 3.52 0.00 0.00 2.29
3114 3453 4.909696 TTCTTTTCGCCATGAAACAAGA 57.090 36.364 0.00 0.00 45.98 3.02
3128 3467 6.790232 TGAAACAAGAAAATTTGGGAGAGT 57.210 33.333 0.00 0.00 32.32 3.24
3161 3500 1.003580 GGGCATCCACTTGAGACTTGA 59.996 52.381 0.00 0.00 0.00 3.02
3163 3502 2.079925 GCATCCACTTGAGACTTGACC 58.920 52.381 0.00 0.00 0.00 4.02
3168 3507 2.498167 CACTTGAGACTTGACCAAGGG 58.502 52.381 13.58 0.00 42.53 3.95
3171 3510 1.376037 GAGACTTGACCAAGGGGCG 60.376 63.158 13.58 0.00 42.53 6.13
3197 3808 4.250464 CCACGATTTGGCAAAGTACTCTA 58.750 43.478 18.61 0.00 39.07 2.43
3201 3812 4.567159 CGATTTGGCAAAGTACTCTACTCC 59.433 45.833 18.61 0.00 38.26 3.85
3211 3822 6.532988 AAGTACTCTACTCCCTTCATTCAC 57.467 41.667 0.00 0.00 38.26 3.18
3218 3829 9.213777 ACTCTACTCCCTTCATTCACAAATATA 57.786 33.333 0.00 0.00 0.00 0.86
3299 3911 9.671279 ACAATAAACATGTCTACATCTGATTCA 57.329 29.630 0.00 0.00 33.61 2.57
3339 3953 6.549912 AAATTTGTGAACGTAGGGAGTAAC 57.450 37.500 0.00 0.00 0.00 2.50
3352 3966 7.046033 CGTAGGGAGTAACATTTACCTCAAAT 58.954 38.462 0.00 0.00 37.32 2.32
3355 3969 7.238710 AGGGAGTAACATTTACCTCAAATTGT 58.761 34.615 0.00 0.00 34.49 2.71
3356 3970 7.176690 AGGGAGTAACATTTACCTCAAATTGTG 59.823 37.037 0.00 0.00 34.49 3.33
3373 3987 9.567848 TCAAATTGTGAACTTTAAAGAGTCAAC 57.432 29.630 21.92 16.03 31.51 3.18
3378 3992 8.420374 TGTGAACTTTAAAGAGTCAACTGTAG 57.580 34.615 21.92 0.00 0.00 2.74
3380 3994 7.709613 GTGAACTTTAAAGAGTCAACTGTAGGA 59.290 37.037 21.92 0.00 0.00 2.94
3400 4014 6.466885 AGGACTAATGTGCGATAACTTACT 57.533 37.500 0.00 0.00 39.62 2.24
3477 4091 4.387862 GGTGTACGTCCAGTTAGTGAAATG 59.612 45.833 0.00 0.00 0.00 2.32
3478 4092 5.224888 GTGTACGTCCAGTTAGTGAAATGA 58.775 41.667 0.00 0.00 32.27 2.57
3479 4093 5.118203 GTGTACGTCCAGTTAGTGAAATGAC 59.882 44.000 0.00 0.00 32.27 3.06
3480 4094 4.602340 ACGTCCAGTTAGTGAAATGACT 57.398 40.909 0.00 0.00 32.27 3.41
3481 4095 5.717078 ACGTCCAGTTAGTGAAATGACTA 57.283 39.130 0.00 0.00 32.27 2.59
3482 4096 6.282199 ACGTCCAGTTAGTGAAATGACTAT 57.718 37.500 0.00 0.00 32.27 2.12
3483 4097 7.400599 ACGTCCAGTTAGTGAAATGACTATA 57.599 36.000 0.00 0.00 32.27 1.31
3484 4098 8.008513 ACGTCCAGTTAGTGAAATGACTATAT 57.991 34.615 0.00 0.00 32.27 0.86
3485 4099 9.128404 ACGTCCAGTTAGTGAAATGACTATATA 57.872 33.333 0.00 0.00 32.27 0.86
3561 4176 2.981898 TGTGACATCAGCAGGAATCAG 58.018 47.619 0.00 0.00 0.00 2.90
3623 4241 4.383774 TGACGCTTCGTTCTATTGTTTG 57.616 40.909 0.00 0.00 41.37 2.93
3636 4254 9.459276 CGTTCTATTGTTTGTTTGTTTCTTTTG 57.541 29.630 0.00 0.00 0.00 2.44
3669 4287 2.281070 CACAGCCAGCTTGACCGT 60.281 61.111 0.00 0.00 0.00 4.83
3715 4333 2.104111 ACATCCTGTGAACCGAACTCAA 59.896 45.455 0.00 0.00 0.00 3.02
3724 4342 1.578583 ACCGAACTCAAGACCAAACG 58.421 50.000 0.00 0.00 0.00 3.60
3739 4357 2.710724 AAACGAAGCGCCGGAGACTT 62.711 55.000 10.31 11.99 0.00 3.01
3752 4370 2.158449 CGGAGACTTGTTTGATGCTCAC 59.842 50.000 0.00 0.00 0.00 3.51
3810 4428 0.588252 CACCGCTGACTGGTTTTCTG 59.412 55.000 0.00 0.00 37.72 3.02
3822 4440 2.169769 TGGTTTTCTGTCCTCGTTGACT 59.830 45.455 8.19 0.00 36.21 3.41
3940 6452 0.039180 TGGAGGGAAGTCGCTACAGA 59.961 55.000 6.21 0.00 43.73 3.41
3956 6468 2.854963 ACAGACTGTGACACATGCATT 58.145 42.857 9.11 0.00 0.00 3.56
3957 6469 2.551032 ACAGACTGTGACACATGCATTG 59.449 45.455 9.11 6.47 0.00 2.82
3958 6470 2.551032 CAGACTGTGACACATGCATTGT 59.449 45.455 9.11 12.41 39.91 2.71
3959 6471 3.747529 CAGACTGTGACACATGCATTGTA 59.252 43.478 9.11 0.75 36.57 2.41
3960 6472 3.999001 AGACTGTGACACATGCATTGTAG 59.001 43.478 9.11 9.95 36.57 2.74
3980 6492 3.015327 AGTGTAGGTAGCTACAGGTTCG 58.985 50.000 30.05 0.00 40.07 3.95
3994 6506 1.066787 AGGTTCGTTGCTAGCTCCTTC 60.067 52.381 17.23 2.36 0.00 3.46
3995 6507 1.066787 GGTTCGTTGCTAGCTCCTTCT 60.067 52.381 17.23 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.671495 AAAACAACTGTTGCAAAGAAATTCT 57.329 28.000 19.82 0.00 38.44 2.40
1 2 9.986833 AATAAAACAACTGTTGCAAAGAAATTC 57.013 25.926 19.82 0.00 38.44 2.17
2 3 9.771915 CAATAAAACAACTGTTGCAAAGAAATT 57.228 25.926 19.82 8.35 38.44 1.82
3 4 7.909641 GCAATAAAACAACTGTTGCAAAGAAAT 59.090 29.630 19.82 3.07 43.33 2.17
4 5 7.239972 GCAATAAAACAACTGTTGCAAAGAAA 58.760 30.769 19.82 0.87 43.33 2.52
5 6 6.770076 GCAATAAAACAACTGTTGCAAAGAA 58.230 32.000 19.82 2.37 43.33 2.52
6 7 6.343226 GCAATAAAACAACTGTTGCAAAGA 57.657 33.333 19.82 3.17 43.33 2.52
11 12 7.967771 AAAAATGCAATAAAACAACTGTTGC 57.032 28.000 19.82 5.22 43.93 4.17
32 33 9.213799 AGAAAACATTAAACTCAGTTGCAAAAA 57.786 25.926 0.00 0.00 0.00 1.94
33 34 8.655092 CAGAAAACATTAAACTCAGTTGCAAAA 58.345 29.630 0.00 0.00 0.00 2.44
34 35 7.201513 GCAGAAAACATTAAACTCAGTTGCAAA 60.202 33.333 0.00 0.00 0.00 3.68
35 36 6.255453 GCAGAAAACATTAAACTCAGTTGCAA 59.745 34.615 0.00 0.00 0.00 4.08
36 37 5.748152 GCAGAAAACATTAAACTCAGTTGCA 59.252 36.000 0.00 0.00 0.00 4.08
37 38 5.748152 TGCAGAAAACATTAAACTCAGTTGC 59.252 36.000 0.00 0.00 0.00 4.17
38 39 7.754069 TTGCAGAAAACATTAAACTCAGTTG 57.246 32.000 0.00 0.00 0.00 3.16
39 40 8.947055 AATTGCAGAAAACATTAAACTCAGTT 57.053 26.923 0.00 0.00 0.00 3.16
42 43 9.474920 CCTTAATTGCAGAAAACATTAAACTCA 57.525 29.630 1.80 0.00 0.00 3.41
43 44 9.476202 ACCTTAATTGCAGAAAACATTAAACTC 57.524 29.630 1.80 0.00 0.00 3.01
44 45 9.476202 GACCTTAATTGCAGAAAACATTAAACT 57.524 29.630 1.80 0.00 0.00 2.66
45 46 9.476202 AGACCTTAATTGCAGAAAACATTAAAC 57.524 29.630 1.80 0.00 0.00 2.01
47 48 9.474920 CAAGACCTTAATTGCAGAAAACATTAA 57.525 29.630 0.00 0.00 0.00 1.40
48 49 8.637986 ACAAGACCTTAATTGCAGAAAACATTA 58.362 29.630 0.00 0.00 0.00 1.90
49 50 7.500141 ACAAGACCTTAATTGCAGAAAACATT 58.500 30.769 0.00 0.00 0.00 2.71
50 51 7.054491 ACAAGACCTTAATTGCAGAAAACAT 57.946 32.000 0.00 0.00 0.00 2.71
51 52 6.463995 ACAAGACCTTAATTGCAGAAAACA 57.536 33.333 0.00 0.00 0.00 2.83
52 53 6.292328 GCAACAAGACCTTAATTGCAGAAAAC 60.292 38.462 18.38 0.00 40.59 2.43
53 54 5.752955 GCAACAAGACCTTAATTGCAGAAAA 59.247 36.000 18.38 0.00 40.59 2.29
54 55 5.163468 TGCAACAAGACCTTAATTGCAGAAA 60.163 36.000 20.48 6.88 43.16 2.52
55 56 4.340666 TGCAACAAGACCTTAATTGCAGAA 59.659 37.500 20.48 7.13 43.16 3.02
56 57 3.888323 TGCAACAAGACCTTAATTGCAGA 59.112 39.130 20.48 7.61 43.16 4.26
57 58 4.241590 TGCAACAAGACCTTAATTGCAG 57.758 40.909 20.48 0.00 43.16 4.41
58 59 3.888323 TCTGCAACAAGACCTTAATTGCA 59.112 39.130 21.84 21.84 44.49 4.08
59 60 4.503741 TCTGCAACAAGACCTTAATTGC 57.496 40.909 17.27 17.27 40.95 3.56
60 61 7.769272 TTTTTCTGCAACAAGACCTTAATTG 57.231 32.000 0.00 0.00 0.00 2.32
95 96 9.469239 CGGATCTACGTTTTATAACAAAACTTC 57.531 33.333 0.00 1.77 37.83 3.01
96 97 8.992073 ACGGATCTACGTTTTATAACAAAACTT 58.008 29.630 0.00 4.51 46.25 2.66
97 98 8.538409 ACGGATCTACGTTTTATAACAAAACT 57.462 30.769 0.00 2.16 46.25 2.66
112 113 1.575244 TGGTCTACGACGGATCTACG 58.425 55.000 0.00 0.00 40.31 3.51
113 114 3.852572 GCAATGGTCTACGACGGATCTAC 60.853 52.174 0.00 0.00 32.65 2.59
114 115 2.292569 GCAATGGTCTACGACGGATCTA 59.707 50.000 0.00 0.00 32.65 1.98
115 116 1.067212 GCAATGGTCTACGACGGATCT 59.933 52.381 0.00 0.00 32.65 2.75
116 117 1.202371 TGCAATGGTCTACGACGGATC 60.202 52.381 0.00 0.00 32.65 3.36
117 118 0.821517 TGCAATGGTCTACGACGGAT 59.178 50.000 0.00 0.00 32.65 4.18
118 119 0.604073 TTGCAATGGTCTACGACGGA 59.396 50.000 0.00 0.00 32.65 4.69
119 120 0.719465 GTTGCAATGGTCTACGACGG 59.281 55.000 0.59 0.00 32.65 4.79
120 121 1.126113 GTGTTGCAATGGTCTACGACG 59.874 52.381 0.59 0.00 32.65 5.12
121 122 2.413837 AGTGTTGCAATGGTCTACGAC 58.586 47.619 0.59 0.00 0.00 4.34
122 123 2.831685 AGTGTTGCAATGGTCTACGA 57.168 45.000 0.59 0.00 0.00 3.43
123 124 3.122948 GTGTAGTGTTGCAATGGTCTACG 59.877 47.826 0.59 0.00 33.00 3.51
124 125 4.062293 TGTGTAGTGTTGCAATGGTCTAC 58.938 43.478 0.59 12.94 0.00 2.59
125 126 4.344359 TGTGTAGTGTTGCAATGGTCTA 57.656 40.909 0.59 0.83 0.00 2.59
126 127 3.207265 TGTGTAGTGTTGCAATGGTCT 57.793 42.857 0.59 1.81 0.00 3.85
127 128 3.253188 ACATGTGTAGTGTTGCAATGGTC 59.747 43.478 0.59 0.00 0.00 4.02
128 129 3.221771 ACATGTGTAGTGTTGCAATGGT 58.778 40.909 0.59 0.00 0.00 3.55
129 130 3.921119 ACATGTGTAGTGTTGCAATGG 57.079 42.857 0.59 0.00 0.00 3.16
130 131 5.280164 TGAAACATGTGTAGTGTTGCAATG 58.720 37.500 0.59 0.00 41.07 2.82
131 132 5.512753 TGAAACATGTGTAGTGTTGCAAT 57.487 34.783 0.59 0.00 41.07 3.56
132 133 4.972514 TGAAACATGTGTAGTGTTGCAA 57.027 36.364 0.00 0.00 41.07 4.08
133 134 4.972514 TTGAAACATGTGTAGTGTTGCA 57.027 36.364 0.00 0.00 42.02 4.08
134 135 6.090088 TGTTTTTGAAACATGTGTAGTGTTGC 59.910 34.615 0.00 0.00 39.57 4.17
135 136 7.573916 TGTTTTTGAAACATGTGTAGTGTTG 57.426 32.000 0.00 0.00 39.57 3.33
136 137 9.515020 CTATGTTTTTGAAACATGTGTAGTGTT 57.485 29.630 22.54 0.00 40.70 3.32
137 138 7.647715 GCTATGTTTTTGAAACATGTGTAGTGT 59.352 33.333 22.54 3.51 40.70 3.55
138 139 7.862372 AGCTATGTTTTTGAAACATGTGTAGTG 59.138 33.333 22.54 9.50 40.70 2.74
139 140 7.940850 AGCTATGTTTTTGAAACATGTGTAGT 58.059 30.769 22.54 4.66 40.70 2.73
140 141 7.538678 GGAGCTATGTTTTTGAAACATGTGTAG 59.461 37.037 22.54 15.24 40.70 2.74
141 142 7.367285 GGAGCTATGTTTTTGAAACATGTGTA 58.633 34.615 22.54 7.57 40.70 2.90
142 143 6.215845 GGAGCTATGTTTTTGAAACATGTGT 58.784 36.000 22.54 0.00 40.70 3.72
143 144 5.343058 CGGAGCTATGTTTTTGAAACATGTG 59.657 40.000 22.54 17.08 40.70 3.21
144 145 5.460646 CGGAGCTATGTTTTTGAAACATGT 58.539 37.500 22.54 11.34 40.70 3.21
145 146 4.858692 CCGGAGCTATGTTTTTGAAACATG 59.141 41.667 22.54 15.45 40.70 3.21
146 147 4.522789 ACCGGAGCTATGTTTTTGAAACAT 59.477 37.500 19.28 19.28 42.82 2.71
147 148 3.886505 ACCGGAGCTATGTTTTTGAAACA 59.113 39.130 9.46 8.49 34.31 2.83
148 149 4.499037 ACCGGAGCTATGTTTTTGAAAC 57.501 40.909 9.46 0.00 0.00 2.78
149 150 4.794655 GCAACCGGAGCTATGTTTTTGAAA 60.795 41.667 9.46 0.00 0.00 2.69
150 151 3.305064 GCAACCGGAGCTATGTTTTTGAA 60.305 43.478 9.46 0.00 0.00 2.69
151 152 2.227865 GCAACCGGAGCTATGTTTTTGA 59.772 45.455 9.46 0.00 0.00 2.69
152 153 2.030363 TGCAACCGGAGCTATGTTTTTG 60.030 45.455 20.82 7.34 0.00 2.44
153 154 2.235016 TGCAACCGGAGCTATGTTTTT 58.765 42.857 20.82 0.00 0.00 1.94
154 155 1.904287 TGCAACCGGAGCTATGTTTT 58.096 45.000 20.82 0.00 0.00 2.43
155 156 1.904287 TTGCAACCGGAGCTATGTTT 58.096 45.000 20.82 0.00 0.00 2.83
156 157 1.904287 TTTGCAACCGGAGCTATGTT 58.096 45.000 20.82 0.00 0.00 2.71
157 158 1.812571 CTTTTGCAACCGGAGCTATGT 59.187 47.619 20.82 0.00 0.00 2.29
158 159 1.468054 GCTTTTGCAACCGGAGCTATG 60.468 52.381 20.82 13.13 46.58 2.23
159 160 0.811281 GCTTTTGCAACCGGAGCTAT 59.189 50.000 20.82 0.00 46.58 2.97
160 161 2.253513 GCTTTTGCAACCGGAGCTA 58.746 52.632 20.82 12.96 46.58 3.32
161 162 3.042560 GCTTTTGCAACCGGAGCT 58.957 55.556 20.82 0.00 46.58 4.09
171 172 2.069277 CACTCGAACGCGCTTTTGC 61.069 57.895 5.73 0.00 43.23 3.68
172 173 2.069277 GCACTCGAACGCGCTTTTG 61.069 57.895 5.73 6.70 37.46 2.44
173 174 2.248431 GCACTCGAACGCGCTTTT 59.752 55.556 5.73 0.00 37.46 2.27
174 175 4.059459 CGCACTCGAACGCGCTTT 62.059 61.111 14.23 0.71 45.57 3.51
180 181 3.966026 GAGACCCCGCACTCGAACG 62.966 68.421 0.00 0.00 38.10 3.95
181 182 2.126031 GAGACCCCGCACTCGAAC 60.126 66.667 0.00 0.00 38.10 3.95
182 183 2.599281 TGAGACCCCGCACTCGAA 60.599 61.111 0.00 0.00 38.10 3.71
183 184 3.371063 GTGAGACCCCGCACTCGA 61.371 66.667 0.00 0.00 39.54 4.04
187 188 1.070786 TTCAAGTGAGACCCCGCAC 59.929 57.895 0.00 0.00 42.38 5.34
188 189 1.070786 GTTCAAGTGAGACCCCGCA 59.929 57.895 0.00 0.00 0.00 5.69
189 190 1.070786 TGTTCAAGTGAGACCCCGC 59.929 57.895 0.00 0.00 0.00 6.13
190 191 0.944311 CGTGTTCAAGTGAGACCCCG 60.944 60.000 0.00 0.00 0.00 5.73
191 192 0.106149 ACGTGTTCAAGTGAGACCCC 59.894 55.000 0.00 0.00 0.00 4.95
192 193 1.217882 CACGTGTTCAAGTGAGACCC 58.782 55.000 7.58 0.00 40.56 4.46
193 194 1.935933 ACACGTGTTCAAGTGAGACC 58.064 50.000 17.22 0.00 40.56 3.85
194 195 3.861113 TGTTACACGTGTTCAAGTGAGAC 59.139 43.478 28.55 17.78 40.56 3.36
195 196 4.112716 TGTTACACGTGTTCAAGTGAGA 57.887 40.909 28.55 1.54 40.56 3.27
196 197 5.118664 CCTATGTTACACGTGTTCAAGTGAG 59.881 44.000 28.55 18.57 40.56 3.51
197 198 4.986034 CCTATGTTACACGTGTTCAAGTGA 59.014 41.667 28.55 3.28 40.56 3.41
198 199 4.151689 CCCTATGTTACACGTGTTCAAGTG 59.848 45.833 28.55 17.43 43.46 3.16
199 200 4.312443 CCCTATGTTACACGTGTTCAAGT 58.688 43.478 28.55 14.12 0.00 3.16
200 201 3.682858 CCCCTATGTTACACGTGTTCAAG 59.317 47.826 28.55 20.92 0.00 3.02
201 202 3.324268 TCCCCTATGTTACACGTGTTCAA 59.676 43.478 28.55 13.52 0.00 2.69
202 203 2.898612 TCCCCTATGTTACACGTGTTCA 59.101 45.455 28.55 24.48 0.00 3.18
203 204 3.518590 CTCCCCTATGTTACACGTGTTC 58.481 50.000 28.55 19.82 0.00 3.18
204 205 2.235402 CCTCCCCTATGTTACACGTGTT 59.765 50.000 28.55 11.47 0.00 3.32
205 206 1.829222 CCTCCCCTATGTTACACGTGT 59.171 52.381 26.52 26.52 0.00 4.49
206 207 1.829222 ACCTCCCCTATGTTACACGTG 59.171 52.381 15.48 15.48 0.00 4.49
207 208 1.829222 CACCTCCCCTATGTTACACGT 59.171 52.381 0.00 0.00 0.00 4.49
208 209 1.138266 CCACCTCCCCTATGTTACACG 59.862 57.143 0.00 0.00 0.00 4.49
209 210 1.134189 GCCACCTCCCCTATGTTACAC 60.134 57.143 0.00 0.00 0.00 2.90
210 211 1.209621 GCCACCTCCCCTATGTTACA 58.790 55.000 0.00 0.00 0.00 2.41
211 212 0.106149 CGCCACCTCCCCTATGTTAC 59.894 60.000 0.00 0.00 0.00 2.50
212 213 1.052124 CCGCCACCTCCCCTATGTTA 61.052 60.000 0.00 0.00 0.00 2.41
213 214 2.375345 CCGCCACCTCCCCTATGTT 61.375 63.158 0.00 0.00 0.00 2.71
214 215 2.768344 CCGCCACCTCCCCTATGT 60.768 66.667 0.00 0.00 0.00 2.29
215 216 2.445845 TCCGCCACCTCCCCTATG 60.446 66.667 0.00 0.00 0.00 2.23
216 217 2.446036 GTCCGCCACCTCCCCTAT 60.446 66.667 0.00 0.00 0.00 2.57
239 240 3.499737 CAACCGGTGGATCGCAGC 61.500 66.667 8.52 4.00 0.00 5.25
240 241 1.153369 ATCAACCGGTGGATCGCAG 60.153 57.895 19.40 0.00 0.00 5.18
241 242 1.153449 GATCAACCGGTGGATCGCA 60.153 57.895 31.41 2.73 31.54 5.10
242 243 3.719214 GATCAACCGGTGGATCGC 58.281 61.111 31.41 14.67 31.54 4.58
244 245 2.100252 TCTTACGATCAACCGGTGGATC 59.900 50.000 33.87 33.87 37.22 3.36
245 246 2.100916 CTCTTACGATCAACCGGTGGAT 59.899 50.000 25.01 25.01 0.00 3.41
246 247 1.475280 CTCTTACGATCAACCGGTGGA 59.525 52.381 15.71 15.71 0.00 4.02
247 248 1.203994 ACTCTTACGATCAACCGGTGG 59.796 52.381 8.52 4.63 0.00 4.61
248 249 2.649331 ACTCTTACGATCAACCGGTG 57.351 50.000 8.52 2.16 0.00 4.94
249 250 3.582780 GAAACTCTTACGATCAACCGGT 58.417 45.455 0.00 0.00 0.00 5.28
250 251 2.928116 GGAAACTCTTACGATCAACCGG 59.072 50.000 0.00 0.00 0.00 5.28
251 252 2.928116 GGGAAACTCTTACGATCAACCG 59.072 50.000 0.00 0.00 0.00 4.44
252 253 3.934068 TGGGAAACTCTTACGATCAACC 58.066 45.455 0.00 0.00 0.00 3.77
253 254 7.787725 ATAATGGGAAACTCTTACGATCAAC 57.212 36.000 0.00 0.00 0.00 3.18
257 258 9.939802 GGTTATATAATGGGAAACTCTTACGAT 57.060 33.333 0.00 0.00 0.00 3.73
258 259 8.370182 GGGTTATATAATGGGAAACTCTTACGA 58.630 37.037 0.00 0.00 0.00 3.43
259 260 7.330208 CGGGTTATATAATGGGAAACTCTTACG 59.670 40.741 0.00 0.00 0.00 3.18
260 261 8.152898 ACGGGTTATATAATGGGAAACTCTTAC 58.847 37.037 0.00 0.00 0.00 2.34
261 262 8.266363 ACGGGTTATATAATGGGAAACTCTTA 57.734 34.615 0.00 0.00 0.00 2.10
262 263 7.145474 ACGGGTTATATAATGGGAAACTCTT 57.855 36.000 0.00 0.00 0.00 2.85
263 264 6.758806 ACGGGTTATATAATGGGAAACTCT 57.241 37.500 0.00 0.00 0.00 3.24
264 265 6.429078 GGAACGGGTTATATAATGGGAAACTC 59.571 42.308 0.00 0.00 0.00 3.01
265 266 6.301486 GGAACGGGTTATATAATGGGAAACT 58.699 40.000 0.00 0.00 0.00 2.66
266 267 5.474532 GGGAACGGGTTATATAATGGGAAAC 59.525 44.000 0.00 0.00 0.00 2.78
267 268 5.457924 GGGGAACGGGTTATATAATGGGAAA 60.458 44.000 0.00 0.00 0.00 3.13
268 269 4.043184 GGGGAACGGGTTATATAATGGGAA 59.957 45.833 0.00 0.00 0.00 3.97
269 270 3.588396 GGGGAACGGGTTATATAATGGGA 59.412 47.826 0.00 0.00 0.00 4.37
270 271 3.590182 AGGGGAACGGGTTATATAATGGG 59.410 47.826 0.00 0.00 0.00 4.00
271 272 4.921644 AGGGGAACGGGTTATATAATGG 57.078 45.455 0.00 0.00 0.00 3.16
272 273 7.720515 TGTAAAAGGGGAACGGGTTATATAATG 59.279 37.037 0.00 0.00 0.00 1.90
273 274 7.814356 TGTAAAAGGGGAACGGGTTATATAAT 58.186 34.615 0.00 0.00 0.00 1.28
274 275 7.205515 TGTAAAAGGGGAACGGGTTATATAA 57.794 36.000 0.00 0.00 0.00 0.98
275 276 6.821616 TGTAAAAGGGGAACGGGTTATATA 57.178 37.500 0.00 0.00 0.00 0.86
276 277 5.713760 TGTAAAAGGGGAACGGGTTATAT 57.286 39.130 0.00 0.00 0.00 0.86
277 278 5.014018 AGTTGTAAAAGGGGAACGGGTTATA 59.986 40.000 0.00 0.00 0.00 0.98
278 279 4.081406 GTTGTAAAAGGGGAACGGGTTAT 58.919 43.478 0.00 0.00 0.00 1.89
279 280 3.138098 AGTTGTAAAAGGGGAACGGGTTA 59.862 43.478 0.00 0.00 0.00 2.85
280 281 2.091720 AGTTGTAAAAGGGGAACGGGTT 60.092 45.455 0.00 0.00 0.00 4.11
281 282 1.496001 AGTTGTAAAAGGGGAACGGGT 59.504 47.619 0.00 0.00 0.00 5.28
282 283 2.281539 AGTTGTAAAAGGGGAACGGG 57.718 50.000 0.00 0.00 0.00 5.28
283 284 3.215975 TGAAGTTGTAAAAGGGGAACGG 58.784 45.455 0.00 0.00 0.00 4.44
284 285 4.277423 ACATGAAGTTGTAAAAGGGGAACG 59.723 41.667 0.00 0.00 0.00 3.95
285 286 5.784578 ACATGAAGTTGTAAAAGGGGAAC 57.215 39.130 0.00 0.00 0.00 3.62
286 287 7.235079 TCATACATGAAGTTGTAAAAGGGGAA 58.765 34.615 0.00 0.00 35.80 3.97
287 288 6.785076 TCATACATGAAGTTGTAAAAGGGGA 58.215 36.000 0.00 0.00 35.80 4.81
288 289 7.461182 TTCATACATGAAGTTGTAAAAGGGG 57.539 36.000 0.00 0.00 41.51 4.79
302 303 8.088365 CACTAGGACCGAATTATTCATACATGA 58.912 37.037 0.00 0.00 34.44 3.07
303 304 7.872993 ACACTAGGACCGAATTATTCATACATG 59.127 37.037 5.76 0.00 0.00 3.21
304 305 7.872993 CACACTAGGACCGAATTATTCATACAT 59.127 37.037 5.76 0.00 0.00 2.29
305 306 7.147794 ACACACTAGGACCGAATTATTCATACA 60.148 37.037 5.76 0.00 0.00 2.29
306 307 7.208080 ACACACTAGGACCGAATTATTCATAC 58.792 38.462 5.76 0.00 0.00 2.39
307 308 7.356089 ACACACTAGGACCGAATTATTCATA 57.644 36.000 5.76 0.00 0.00 2.15
308 309 6.235231 ACACACTAGGACCGAATTATTCAT 57.765 37.500 5.76 0.00 0.00 2.57
309 310 5.670792 ACACACTAGGACCGAATTATTCA 57.329 39.130 5.76 0.00 0.00 2.57
310 311 7.035840 TCTACACACTAGGACCGAATTATTC 57.964 40.000 0.00 0.00 0.00 1.75
311 312 7.414222 TTCTACACACTAGGACCGAATTATT 57.586 36.000 0.00 0.00 0.00 1.40
312 313 7.598759 ATTCTACACACTAGGACCGAATTAT 57.401 36.000 0.00 0.00 0.00 1.28
313 314 7.093640 ACAATTCTACACACTAGGACCGAATTA 60.094 37.037 0.00 0.00 31.08 1.40
314 315 5.934402 ATTCTACACACTAGGACCGAATT 57.066 39.130 0.00 0.00 0.00 2.17
315 316 5.187186 ACAATTCTACACACTAGGACCGAAT 59.813 40.000 0.00 0.00 0.00 3.34
316 317 4.525487 ACAATTCTACACACTAGGACCGAA 59.475 41.667 0.00 0.00 0.00 4.30
317 318 4.082408 CACAATTCTACACACTAGGACCGA 60.082 45.833 0.00 0.00 0.00 4.69
318 319 4.174009 CACAATTCTACACACTAGGACCG 58.826 47.826 0.00 0.00 0.00 4.79
319 320 4.020485 ACCACAATTCTACACACTAGGACC 60.020 45.833 0.00 0.00 0.00 4.46
320 321 5.148651 ACCACAATTCTACACACTAGGAC 57.851 43.478 0.00 0.00 0.00 3.85
321 322 5.818678 AACCACAATTCTACACACTAGGA 57.181 39.130 0.00 0.00 0.00 2.94
322 323 5.411669 GGAAACCACAATTCTACACACTAGG 59.588 44.000 0.00 0.00 0.00 3.02
323 324 6.147821 CAGGAAACCACAATTCTACACACTAG 59.852 42.308 0.00 0.00 0.00 2.57
324 325 5.995282 CAGGAAACCACAATTCTACACACTA 59.005 40.000 0.00 0.00 0.00 2.74
325 326 4.821805 CAGGAAACCACAATTCTACACACT 59.178 41.667 0.00 0.00 0.00 3.55
326 327 4.819630 TCAGGAAACCACAATTCTACACAC 59.180 41.667 0.00 0.00 0.00 3.82
327 328 5.042463 TCAGGAAACCACAATTCTACACA 57.958 39.130 0.00 0.00 0.00 3.72
328 329 4.083271 GCTCAGGAAACCACAATTCTACAC 60.083 45.833 0.00 0.00 0.00 2.90
329 330 4.072131 GCTCAGGAAACCACAATTCTACA 58.928 43.478 0.00 0.00 0.00 2.74
330 331 4.072131 TGCTCAGGAAACCACAATTCTAC 58.928 43.478 0.00 0.00 0.00 2.59
331 332 4.202461 ACTGCTCAGGAAACCACAATTCTA 60.202 41.667 1.66 0.00 0.00 2.10
332 333 3.152341 CTGCTCAGGAAACCACAATTCT 58.848 45.455 0.00 0.00 0.00 2.40
333 334 2.887152 ACTGCTCAGGAAACCACAATTC 59.113 45.455 1.66 0.00 0.00 2.17
334 335 2.624838 CACTGCTCAGGAAACCACAATT 59.375 45.455 1.66 0.00 0.00 2.32
335 336 2.233271 CACTGCTCAGGAAACCACAAT 58.767 47.619 1.66 0.00 0.00 2.71
336 337 1.064758 ACACTGCTCAGGAAACCACAA 60.065 47.619 1.66 0.00 0.00 3.33
337 338 0.546122 ACACTGCTCAGGAAACCACA 59.454 50.000 1.66 0.00 0.00 4.17
338 339 2.543777 TACACTGCTCAGGAAACCAC 57.456 50.000 1.66 0.00 0.00 4.16
339 340 2.290260 CCATACACTGCTCAGGAAACCA 60.290 50.000 1.66 0.00 0.00 3.67
340 341 2.290323 ACCATACACTGCTCAGGAAACC 60.290 50.000 1.66 0.00 0.00 3.27
341 342 2.744202 CACCATACACTGCTCAGGAAAC 59.256 50.000 1.66 0.00 0.00 2.78
342 343 2.371841 ACACCATACACTGCTCAGGAAA 59.628 45.455 1.66 0.00 0.00 3.13
343 344 1.977854 ACACCATACACTGCTCAGGAA 59.022 47.619 1.66 0.00 0.00 3.36
344 345 1.276138 CACACCATACACTGCTCAGGA 59.724 52.381 1.66 0.00 0.00 3.86
345 346 1.730501 CACACCATACACTGCTCAGG 58.269 55.000 1.66 0.00 0.00 3.86
346 347 1.081892 GCACACCATACACTGCTCAG 58.918 55.000 0.00 0.00 0.00 3.35
347 348 0.396060 TGCACACCATACACTGCTCA 59.604 50.000 0.00 0.00 0.00 4.26
348 349 1.081892 CTGCACACCATACACTGCTC 58.918 55.000 0.00 0.00 0.00 4.26
349 350 0.397941 ACTGCACACCATACACTGCT 59.602 50.000 0.00 0.00 0.00 4.24
350 351 1.238439 AACTGCACACCATACACTGC 58.762 50.000 0.00 0.00 0.00 4.40
351 352 3.565482 AGAAAACTGCACACCATACACTG 59.435 43.478 0.00 0.00 0.00 3.66
352 353 3.820557 AGAAAACTGCACACCATACACT 58.179 40.909 0.00 0.00 0.00 3.55
353 354 4.568152 AAGAAAACTGCACACCATACAC 57.432 40.909 0.00 0.00 0.00 2.90
354 355 6.294453 CCATTAAGAAAACTGCACACCATACA 60.294 38.462 0.00 0.00 0.00 2.29
355 356 6.092748 CCATTAAGAAAACTGCACACCATAC 58.907 40.000 0.00 0.00 0.00 2.39
356 357 5.336372 GCCATTAAGAAAACTGCACACCATA 60.336 40.000 0.00 0.00 0.00 2.74
357 358 4.561326 GCCATTAAGAAAACTGCACACCAT 60.561 41.667 0.00 0.00 0.00 3.55
358 359 3.243704 GCCATTAAGAAAACTGCACACCA 60.244 43.478 0.00 0.00 0.00 4.17
359 360 3.005791 AGCCATTAAGAAAACTGCACACC 59.994 43.478 0.00 0.00 0.00 4.16
360 361 3.983344 CAGCCATTAAGAAAACTGCACAC 59.017 43.478 0.00 0.00 0.00 3.82
361 362 3.636300 ACAGCCATTAAGAAAACTGCACA 59.364 39.130 0.00 0.00 0.00 4.57
362 363 4.243007 ACAGCCATTAAGAAAACTGCAC 57.757 40.909 0.00 0.00 0.00 4.57
363 364 4.935352 AACAGCCATTAAGAAAACTGCA 57.065 36.364 0.00 0.00 0.00 4.41
364 365 5.049828 ACAAACAGCCATTAAGAAAACTGC 58.950 37.500 0.00 0.00 0.00 4.40
365 366 6.272318 TCACAAACAGCCATTAAGAAAACTG 58.728 36.000 0.00 0.00 0.00 3.16
366 367 6.096846 ACTCACAAACAGCCATTAAGAAAACT 59.903 34.615 0.00 0.00 0.00 2.66
367 368 6.273071 ACTCACAAACAGCCATTAAGAAAAC 58.727 36.000 0.00 0.00 0.00 2.43
368 369 6.463995 ACTCACAAACAGCCATTAAGAAAA 57.536 33.333 0.00 0.00 0.00 2.29
369 370 6.463995 AACTCACAAACAGCCATTAAGAAA 57.536 33.333 0.00 0.00 0.00 2.52
370 371 6.321181 AGAAACTCACAAACAGCCATTAAGAA 59.679 34.615 0.00 0.00 0.00 2.52
371 372 5.827797 AGAAACTCACAAACAGCCATTAAGA 59.172 36.000 0.00 0.00 0.00 2.10
372 373 6.076981 AGAAACTCACAAACAGCCATTAAG 57.923 37.500 0.00 0.00 0.00 1.85
373 374 7.575414 TTAGAAACTCACAAACAGCCATTAA 57.425 32.000 0.00 0.00 0.00 1.40
374 375 7.759489 ATTAGAAACTCACAAACAGCCATTA 57.241 32.000 0.00 0.00 0.00 1.90
375 376 6.655078 ATTAGAAACTCACAAACAGCCATT 57.345 33.333 0.00 0.00 0.00 3.16
376 377 6.655078 AATTAGAAACTCACAAACAGCCAT 57.345 33.333 0.00 0.00 0.00 4.40
377 378 6.463995 AAATTAGAAACTCACAAACAGCCA 57.536 33.333 0.00 0.00 0.00 4.75
378 379 7.203218 AGAAAATTAGAAACTCACAAACAGCC 58.797 34.615 0.00 0.00 0.00 4.85
379 380 9.899226 ATAGAAAATTAGAAACTCACAAACAGC 57.101 29.630 0.00 0.00 0.00 4.40
404 405 9.574516 AAGCAAAGTATCCGAAAATAGGAATAT 57.425 29.630 0.00 0.00 41.69 1.28
405 406 8.974060 AAGCAAAGTATCCGAAAATAGGAATA 57.026 30.769 0.00 0.00 41.69 1.75
406 407 7.775561 AGAAGCAAAGTATCCGAAAATAGGAAT 59.224 33.333 0.00 0.00 41.69 3.01
407 408 7.110155 AGAAGCAAAGTATCCGAAAATAGGAA 58.890 34.615 0.00 0.00 41.69 3.36
408 409 6.650120 AGAAGCAAAGTATCCGAAAATAGGA 58.350 36.000 0.00 0.00 42.69 2.94
409 410 6.927294 AGAAGCAAAGTATCCGAAAATAGG 57.073 37.500 0.00 0.00 0.00 2.57
410 411 8.669243 AGAAAGAAGCAAAGTATCCGAAAATAG 58.331 33.333 0.00 0.00 0.00 1.73
411 412 8.561738 AGAAAGAAGCAAAGTATCCGAAAATA 57.438 30.769 0.00 0.00 0.00 1.40
412 413 7.454260 AGAAAGAAGCAAAGTATCCGAAAAT 57.546 32.000 0.00 0.00 0.00 1.82
413 414 6.877611 AGAAAGAAGCAAAGTATCCGAAAA 57.122 33.333 0.00 0.00 0.00 2.29
414 415 7.972832 TTAGAAAGAAGCAAAGTATCCGAAA 57.027 32.000 0.00 0.00 0.00 3.46
415 416 7.972832 TTTAGAAAGAAGCAAAGTATCCGAA 57.027 32.000 0.00 0.00 0.00 4.30
416 417 7.010183 CGATTTAGAAAGAAGCAAAGTATCCGA 59.990 37.037 0.00 0.00 0.00 4.55
417 418 7.010183 TCGATTTAGAAAGAAGCAAAGTATCCG 59.990 37.037 0.00 0.00 0.00 4.18
418 419 8.197988 TCGATTTAGAAAGAAGCAAAGTATCC 57.802 34.615 0.00 0.00 0.00 2.59
419 420 8.874816 ACTCGATTTAGAAAGAAGCAAAGTATC 58.125 33.333 0.00 0.00 0.00 2.24
420 421 8.779354 ACTCGATTTAGAAAGAAGCAAAGTAT 57.221 30.769 0.00 0.00 0.00 2.12
421 422 7.061905 CGACTCGATTTAGAAAGAAGCAAAGTA 59.938 37.037 0.00 0.00 0.00 2.24
422 423 6.128795 CGACTCGATTTAGAAAGAAGCAAAGT 60.129 38.462 0.00 0.00 0.00 2.66
423 424 6.237073 CGACTCGATTTAGAAAGAAGCAAAG 58.763 40.000 0.00 0.00 0.00 2.77
424 425 5.389516 GCGACTCGATTTAGAAAGAAGCAAA 60.390 40.000 1.63 0.00 0.00 3.68
425 426 4.091509 GCGACTCGATTTAGAAAGAAGCAA 59.908 41.667 1.63 0.00 0.00 3.91
426 427 3.612860 GCGACTCGATTTAGAAAGAAGCA 59.387 43.478 1.63 0.00 0.00 3.91
427 428 3.860536 AGCGACTCGATTTAGAAAGAAGC 59.139 43.478 1.63 0.00 0.00 3.86
428 429 5.722592 GCAAGCGACTCGATTTAGAAAGAAG 60.723 44.000 1.63 0.00 31.64 2.85
429 430 4.091509 GCAAGCGACTCGATTTAGAAAGAA 59.908 41.667 1.63 0.00 31.64 2.52
430 431 3.612860 GCAAGCGACTCGATTTAGAAAGA 59.387 43.478 1.63 0.00 31.64 2.52
431 432 3.242123 GGCAAGCGACTCGATTTAGAAAG 60.242 47.826 1.63 0.00 31.64 2.62
432 433 2.671396 GGCAAGCGACTCGATTTAGAAA 59.329 45.455 1.63 0.00 31.64 2.52
433 434 2.268298 GGCAAGCGACTCGATTTAGAA 58.732 47.619 1.63 0.00 31.64 2.10
434 435 1.203758 TGGCAAGCGACTCGATTTAGA 59.796 47.619 1.63 0.00 31.64 2.10
435 436 1.640428 TGGCAAGCGACTCGATTTAG 58.360 50.000 1.63 0.00 31.64 1.85
436 437 2.201732 GATGGCAAGCGACTCGATTTA 58.798 47.619 1.63 0.00 31.64 1.40
437 438 1.009829 GATGGCAAGCGACTCGATTT 58.990 50.000 1.63 0.00 31.64 2.17
438 439 0.811616 GGATGGCAAGCGACTCGATT 60.812 55.000 1.63 0.00 35.32 3.34
439 440 1.227380 GGATGGCAAGCGACTCGAT 60.227 57.895 1.63 0.00 0.00 3.59
440 441 2.166130 TTGGATGGCAAGCGACTCGA 62.166 55.000 1.63 0.00 0.00 4.04
441 442 1.741401 TTGGATGGCAAGCGACTCG 60.741 57.895 0.00 0.00 0.00 4.18
442 443 0.955428 TGTTGGATGGCAAGCGACTC 60.955 55.000 0.00 0.00 0.00 3.36
443 444 0.322816 ATGTTGGATGGCAAGCGACT 60.323 50.000 0.00 0.00 0.00 4.18
444 445 0.099436 GATGTTGGATGGCAAGCGAC 59.901 55.000 0.00 0.00 0.00 5.19
445 446 0.322366 TGATGTTGGATGGCAAGCGA 60.322 50.000 0.00 0.00 0.00 4.93
446 447 0.527113 TTGATGTTGGATGGCAAGCG 59.473 50.000 0.00 0.00 0.00 4.68
447 448 2.166870 TCATTGATGTTGGATGGCAAGC 59.833 45.455 0.00 0.00 0.00 4.01
448 449 4.459390 TTCATTGATGTTGGATGGCAAG 57.541 40.909 0.00 0.00 0.00 4.01
449 450 4.886496 TTTCATTGATGTTGGATGGCAA 57.114 36.364 0.00 0.00 0.00 4.52
450 451 4.322877 CCTTTTCATTGATGTTGGATGGCA 60.323 41.667 0.00 0.00 0.00 4.92
451 452 4.186159 CCTTTTCATTGATGTTGGATGGC 58.814 43.478 0.00 0.00 0.00 4.40
452 453 5.410355 ACCTTTTCATTGATGTTGGATGG 57.590 39.130 0.00 0.00 0.00 3.51
453 454 8.036575 ACATAACCTTTTCATTGATGTTGGATG 58.963 33.333 0.00 0.00 0.00 3.51
463 464 8.405531 ACGAATATCCACATAACCTTTTCATTG 58.594 33.333 0.00 0.00 0.00 2.82
464 465 8.519799 ACGAATATCCACATAACCTTTTCATT 57.480 30.769 0.00 0.00 0.00 2.57
497 498 7.611467 TGTTGTGCTGATGGATTCTTATTAGTT 59.389 33.333 0.00 0.00 0.00 2.24
499 500 7.558161 TGTTGTGCTGATGGATTCTTATTAG 57.442 36.000 0.00 0.00 0.00 1.73
506 507 2.416431 GCCTTGTTGTGCTGATGGATTC 60.416 50.000 0.00 0.00 0.00 2.52
509 510 1.236616 CGCCTTGTTGTGCTGATGGA 61.237 55.000 0.00 0.00 0.00 3.41
525 526 1.062525 CTACAAGGAAATGCGCGCC 59.937 57.895 30.77 13.14 0.00 6.53
540 541 5.907207 TCTCATAGATGAAACACCAGCTAC 58.093 41.667 0.00 0.00 37.79 3.58
546 547 5.967674 CGCAAATTCTCATAGATGAAACACC 59.032 40.000 0.00 0.00 36.18 4.16
547 548 6.467047 CACGCAAATTCTCATAGATGAAACAC 59.533 38.462 0.00 0.00 36.18 3.32
550 551 6.741992 ACACGCAAATTCTCATAGATGAAA 57.258 33.333 0.00 0.00 36.18 2.69
571 576 4.200874 ACAAACCAAACCAGACGATTACA 58.799 39.130 0.00 0.00 0.00 2.41
575 580 3.283751 TCAACAAACCAAACCAGACGAT 58.716 40.909 0.00 0.00 0.00 3.73
577 582 3.175929 GTTCAACAAACCAAACCAGACG 58.824 45.455 0.00 0.00 31.20 4.18
616 621 5.106317 GCACTAATCAAAATGTTCGAAGGGA 60.106 40.000 0.00 0.00 0.00 4.20
622 627 8.839947 TCAATATGCACTAATCAAAATGTTCG 57.160 30.769 0.00 0.00 0.00 3.95
769 779 2.050985 GCTTTGGCGCACTGACAC 60.051 61.111 10.83 0.00 32.88 3.67
787 797 1.153958 GTTTGCGGGAGATGCTTGC 60.154 57.895 0.00 0.00 0.00 4.01
855 868 7.201732 GGACATGACAGGTAATTTAGGATTGTG 60.202 40.741 0.00 0.00 0.00 3.33
856 869 6.828785 GGACATGACAGGTAATTTAGGATTGT 59.171 38.462 0.00 0.00 0.00 2.71
903 916 3.552294 GCTCTGTACGTCAAATCCTAAGC 59.448 47.826 0.00 0.00 0.00 3.09
1118 1138 2.821366 CAGCGCCGAGGATGCTTT 60.821 61.111 2.29 0.00 36.69 3.51
1130 1154 1.663135 GATCTCAGAAAGAACCAGCGC 59.337 52.381 0.00 0.00 37.61 5.92
1133 1157 3.186119 GCTCGATCTCAGAAAGAACCAG 58.814 50.000 0.00 0.00 37.61 4.00
1136 1160 2.596419 CGTGCTCGATCTCAGAAAGAAC 59.404 50.000 1.00 0.00 37.61 3.01
1137 1161 2.416027 CCGTGCTCGATCTCAGAAAGAA 60.416 50.000 10.21 0.00 37.61 2.52
1138 1162 1.133216 CCGTGCTCGATCTCAGAAAGA 59.867 52.381 10.21 0.00 39.71 2.52
1140 1164 1.173913 TCCGTGCTCGATCTCAGAAA 58.826 50.000 10.21 0.00 39.71 2.52
1141 1165 1.066152 CATCCGTGCTCGATCTCAGAA 59.934 52.381 10.21 0.00 39.71 3.02
1142 1166 0.665298 CATCCGTGCTCGATCTCAGA 59.335 55.000 10.21 0.00 39.71 3.27
1144 1168 0.665298 CTCATCCGTGCTCGATCTCA 59.335 55.000 10.21 0.00 39.71 3.27
1147 1171 1.203928 CAACTCATCCGTGCTCGATC 58.796 55.000 10.21 0.00 39.71 3.69
1148 1172 0.179100 CCAACTCATCCGTGCTCGAT 60.179 55.000 10.21 0.00 39.71 3.59
1149 1173 1.215382 CCAACTCATCCGTGCTCGA 59.785 57.895 10.21 0.00 39.71 4.04
1150 1174 1.079819 ACCAACTCATCCGTGCTCG 60.080 57.895 0.14 0.14 0.00 5.03
1507 1567 2.938002 CGCGCACTCGTAGTCGTC 60.938 66.667 8.75 0.00 38.14 4.20
1508 1568 3.642008 GACGCGCACTCGTAGTCGT 62.642 63.158 5.73 0.00 43.42 4.34
1509 1569 2.938002 GACGCGCACTCGTAGTCG 60.938 66.667 5.73 0.00 43.42 4.18
1877 1949 2.649034 GCTCTCCCACGTCGTCAA 59.351 61.111 0.00 0.00 0.00 3.18
1917 1989 2.670592 TCCGGCTCGAACTCGACA 60.671 61.111 0.00 0.00 44.22 4.35
1956 2028 4.735132 ATGACGTCGGGTGGCGTG 62.735 66.667 11.62 0.00 41.70 5.34
2057 2129 2.363018 CTGGAGGCTCCTCGGTGA 60.363 66.667 32.28 11.78 43.59 4.02
2065 2137 4.459089 GACCGGTGCTGGAGGCTC 62.459 72.222 14.63 5.78 42.39 4.70
2068 2140 4.436998 GTCGACCGGTGCTGGAGG 62.437 72.222 14.63 0.00 0.00 4.30
2069 2141 4.436998 GGTCGACCGGTGCTGGAG 62.437 72.222 20.85 0.00 0.00 3.86
2080 2152 4.530857 CTCCATGGGCGGGTCGAC 62.531 72.222 13.02 7.13 0.00 4.20
2083 2155 3.866582 CTCCTCCATGGGCGGGTC 61.867 72.222 13.02 0.00 36.20 4.46
2087 2159 4.247380 GAGGCTCCTCCATGGGCG 62.247 72.222 13.02 3.27 37.11 6.13
2203 2293 2.438434 CATGGGAGGCGGTTCCAC 60.438 66.667 3.38 0.00 39.09 4.02
2238 2328 1.302832 CTCCTCAACTGGTGGTGGC 60.303 63.158 0.00 0.00 0.00 5.01
2439 2758 0.988832 TTCCATAAGCGGGTTGACCT 59.011 50.000 2.08 0.00 36.97 3.85
2495 2814 2.429930 CGGTGGCTCCTCAACCAA 59.570 61.111 3.83 0.00 37.79 3.67
2567 2886 2.187946 GTCCATCGGTGGCTCCTG 59.812 66.667 10.80 0.00 45.63 3.86
2725 3059 3.425014 ACTGGTGTTGGGGCCACA 61.425 61.111 1.54 1.54 34.46 4.17
2727 3061 3.897122 GGACTGGTGTTGGGGCCA 61.897 66.667 4.39 0.00 0.00 5.36
2791 3125 3.493176 CGGTGCTACCATCTGATTCATCA 60.493 47.826 6.21 0.00 38.47 3.07
2794 3128 1.138859 CCGGTGCTACCATCTGATTCA 59.861 52.381 0.00 0.00 38.47 2.57
2800 3134 0.465705 CATCACCGGTGCTACCATCT 59.534 55.000 30.25 3.54 38.47 2.90
2812 3146 2.100631 GCCGTTGTCCTCATCACCG 61.101 63.158 0.00 0.00 0.00 4.94
2814 3148 1.078759 CTCGCCGTTGTCCTCATCAC 61.079 60.000 0.00 0.00 0.00 3.06
2817 3151 2.579201 CCTCGCCGTTGTCCTCAT 59.421 61.111 0.00 0.00 0.00 2.90
2911 3245 3.070576 GGAGCAACCACCATGCCC 61.071 66.667 0.00 0.00 44.91 5.36
2989 3323 4.049186 CGAACCACCTCTATAATCAACCG 58.951 47.826 0.00 0.00 0.00 4.44
3000 3334 3.382832 CCGAGCCGAACCACCTCT 61.383 66.667 0.00 0.00 0.00 3.69
3017 3351 1.555967 ACATGGGTTACACAATGGCC 58.444 50.000 0.00 0.00 0.00 5.36
3022 3356 6.999272 ACAAGTATACAACATGGGTTACACAA 59.001 34.615 5.50 0.00 34.87 3.33
3063 3401 1.066430 GGTGCCAAGACGAATCCTACA 60.066 52.381 0.00 0.00 0.00 2.74
3066 3404 1.079127 CGGTGCCAAGACGAATCCT 60.079 57.895 0.00 0.00 0.00 3.24
3067 3405 0.672401 TTCGGTGCCAAGACGAATCC 60.672 55.000 0.00 0.00 41.12 3.01
3072 3410 1.156736 AAGAATTCGGTGCCAAGACG 58.843 50.000 0.00 0.00 0.00 4.18
3073 3411 3.643159 AAAAGAATTCGGTGCCAAGAC 57.357 42.857 0.00 0.00 0.00 3.01
3100 3439 4.083908 CCCAAATTTTCTTGTTTCATGGCG 60.084 41.667 0.00 0.00 0.00 5.69
3114 3453 6.127730 CCGCTACAAATACTCTCCCAAATTTT 60.128 38.462 0.00 0.00 0.00 1.82
3155 3494 2.359975 CCGCCCCTTGGTCAAGTC 60.360 66.667 9.51 0.00 36.72 3.01
3192 3803 5.825593 TTTGTGAATGAAGGGAGTAGAGT 57.174 39.130 0.00 0.00 0.00 3.24
3307 3919 9.550811 CCCTACGTTCACAAATTTTTATCTAAC 57.449 33.333 0.00 0.00 0.00 2.34
3308 3920 9.504708 TCCCTACGTTCACAAATTTTTATCTAA 57.495 29.630 0.00 0.00 0.00 2.10
3309 3921 9.158233 CTCCCTACGTTCACAAATTTTTATCTA 57.842 33.333 0.00 0.00 0.00 1.98
3311 3923 7.813645 ACTCCCTACGTTCACAAATTTTTATC 58.186 34.615 0.00 0.00 0.00 1.75
3312 3924 7.754851 ACTCCCTACGTTCACAAATTTTTAT 57.245 32.000 0.00 0.00 0.00 1.40
3313 3925 8.558700 GTTACTCCCTACGTTCACAAATTTTTA 58.441 33.333 0.00 0.00 0.00 1.52
3314 3926 7.067251 TGTTACTCCCTACGTTCACAAATTTTT 59.933 33.333 0.00 0.00 0.00 1.94
3315 3927 6.543100 TGTTACTCCCTACGTTCACAAATTTT 59.457 34.615 0.00 0.00 0.00 1.82
3316 3928 6.056884 TGTTACTCCCTACGTTCACAAATTT 58.943 36.000 0.00 0.00 0.00 1.82
3317 3929 5.613329 TGTTACTCCCTACGTTCACAAATT 58.387 37.500 0.00 0.00 0.00 1.82
3323 3937 5.481473 AGGTAAATGTTACTCCCTACGTTCA 59.519 40.000 0.00 0.00 0.00 3.18
3327 3941 5.587388 TGAGGTAAATGTTACTCCCTACG 57.413 43.478 0.00 0.00 0.00 3.51
3329 3943 8.387813 ACAATTTGAGGTAAATGTTACTCCCTA 58.612 33.333 2.79 0.00 38.93 3.53
3352 3966 7.681939 ACAGTTGACTCTTTAAAGTTCACAA 57.318 32.000 14.74 13.08 0.00 3.33
3355 3969 7.709613 GTCCTACAGTTGACTCTTTAAAGTTCA 59.290 37.037 14.74 14.59 0.00 3.18
3356 3970 7.927092 AGTCCTACAGTTGACTCTTTAAAGTTC 59.073 37.037 14.74 12.44 37.24 3.01
3368 3982 3.612860 CGCACATTAGTCCTACAGTTGAC 59.387 47.826 0.00 0.00 0.00 3.18
3373 3987 5.833082 AGTTATCGCACATTAGTCCTACAG 58.167 41.667 0.00 0.00 0.00 2.74
3378 3992 8.133627 TCTAAGTAAGTTATCGCACATTAGTCC 58.866 37.037 0.00 0.00 0.00 3.85
3400 4014 9.515226 GTTGCCTATATTCCACCATAAATCTAA 57.485 33.333 0.00 0.00 0.00 2.10
3407 4021 4.020573 CCGAGTTGCCTATATTCCACCATA 60.021 45.833 0.00 0.00 0.00 2.74
3417 4031 7.523380 GCTTCTACTAATTCCGAGTTGCCTATA 60.523 40.741 0.00 0.00 0.00 1.31
3535 4150 6.433716 TGATTCCTGCTGATGTCACAATTTAA 59.566 34.615 0.00 0.00 0.00 1.52
3552 4167 0.256752 TGGACATGCCCTGATTCCTG 59.743 55.000 0.00 0.00 34.97 3.86
3561 4176 1.608590 CGATATTTGGTGGACATGCCC 59.391 52.381 0.00 0.00 34.97 5.36
3623 4241 4.029750 CGACGGTTCACAAAAGAAACAAAC 59.970 41.667 0.00 0.00 34.90 2.93
3706 4324 1.860676 TCGTTTGGTCTTGAGTTCGG 58.139 50.000 0.00 0.00 0.00 4.30
3715 4333 3.041940 CGGCGCTTCGTTTGGTCT 61.042 61.111 7.64 0.00 0.00 3.85
3724 4342 1.228657 AAACAAGTCTCCGGCGCTTC 61.229 55.000 7.64 0.00 0.00 3.86
3810 4428 0.889306 ACCTAGCAGTCAACGAGGAC 59.111 55.000 0.00 0.00 38.08 3.85
3926 6431 1.540267 TCACAGTCTGTAGCGACTTCC 59.460 52.381 4.85 0.00 42.10 3.46
3940 6452 3.499537 CACTACAATGCATGTGTCACAGT 59.500 43.478 12.03 11.51 43.77 3.55
3956 6468 4.581309 ACCTGTAGCTACCTACACTACA 57.419 45.455 21.01 0.53 46.72 2.74
3957 6469 4.034975 CGAACCTGTAGCTACCTACACTAC 59.965 50.000 21.01 4.75 46.72 2.73
3958 6470 4.194640 CGAACCTGTAGCTACCTACACTA 58.805 47.826 21.01 0.00 46.72 2.74
3959 6471 3.015327 CGAACCTGTAGCTACCTACACT 58.985 50.000 21.01 0.96 46.72 3.55
3960 6472 2.751806 ACGAACCTGTAGCTACCTACAC 59.248 50.000 21.01 8.97 46.72 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.