Multiple sequence alignment - TraesCS2A01G078100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G078100 chr2A 100.000 3637 0 0 1 3637 35633385 35637021 0.000000e+00 6717.0
1 TraesCS2A01G078100 chr2A 90.267 1685 120 13 977 2658 35654246 35655889 0.000000e+00 2163.0
2 TraesCS2A01G078100 chr2A 88.266 1142 90 19 2020 3141 35650289 35651406 0.000000e+00 1327.0
3 TraesCS2A01G078100 chr2A 94.545 110 5 1 3144 3253 35651482 35651590 6.250000e-38 169.0
4 TraesCS2A01G078100 chr2A 85.926 135 14 1 1862 1996 35650164 35650293 4.900000e-29 139.0
5 TraesCS2A01G078100 chrUn 95.094 1814 80 5 854 2658 24900154 24901967 0.000000e+00 2848.0
6 TraesCS2A01G078100 chrUn 88.225 1155 96 21 2020 3144 24905570 24906714 0.000000e+00 1343.0
7 TraesCS2A01G078100 chrUn 89.150 1023 96 6 977 1996 24904564 24905574 0.000000e+00 1260.0
8 TraesCS2A01G078100 chrUn 89.122 1002 94 9 977 1969 24910787 24911782 0.000000e+00 1232.0
9 TraesCS2A01G078100 chrUn 83.680 913 122 18 2001 2891 24911777 24912684 0.000000e+00 835.0
10 TraesCS2A01G078100 chrUn 90.136 294 15 6 291 573 24899502 24899792 1.600000e-98 370.0
11 TraesCS2A01G078100 chrUn 85.816 282 15 9 571 847 24899829 24900090 3.580000e-70 276.0
12 TraesCS2A01G078100 chrUn 93.396 106 7 0 3148 3253 24906787 24906892 1.350000e-34 158.0
13 TraesCS2A01G078100 chrUn 93.814 97 6 0 3148 3244 24902482 24902578 2.930000e-31 147.0
14 TraesCS2A01G078100 chr2B 91.285 1136 73 11 847 1971 53582986 53584106 0.000000e+00 1526.0
15 TraesCS2A01G078100 chr2B 86.606 1202 107 23 1636 2818 53659331 53660497 0.000000e+00 1279.0
16 TraesCS2A01G078100 chr2B 88.878 998 98 7 977 1969 53665682 53666671 0.000000e+00 1216.0
17 TraesCS2A01G078100 chr2B 88.609 992 87 14 1962 2929 53584194 53585183 0.000000e+00 1182.0
18 TraesCS2A01G078100 chr2B 89.790 666 58 5 977 1639 53658188 53658846 0.000000e+00 845.0
19 TraesCS2A01G078100 chr2B 91.053 380 30 3 3259 3637 756305930 756305554 9.010000e-141 510.0
20 TraesCS2A01G078100 chr2B 90.263 380 33 3 3259 3637 756335127 756334751 9.070000e-136 494.0
21 TraesCS2A01G078100 chr2B 90.212 378 33 3 3259 3635 756320778 756320404 1.170000e-134 490.0
22 TraesCS2A01G078100 chr2B 79.794 485 45 26 291 757 53582443 53582892 1.640000e-78 303.0
23 TraesCS2A01G078100 chr2B 91.351 185 11 3 2961 3144 53645825 53646005 7.800000e-62 248.0
24 TraesCS2A01G078100 chr2B 94.545 110 6 0 3144 3253 53646074 53646183 1.740000e-38 171.0
25 TraesCS2A01G078100 chr2B 94.545 110 6 0 3144 3253 53660982 53661091 1.740000e-38 171.0
26 TraesCS2A01G078100 chr5D 94.949 396 14 5 3247 3637 51923859 51923465 1.860000e-172 616.0
27 TraesCS2A01G078100 chr5D 85.971 278 33 5 2 279 362562411 362562682 3.550000e-75 292.0
28 TraesCS2A01G078100 chr6A 78.705 911 162 23 1025 1927 121871036 121871922 2.430000e-161 579.0
29 TraesCS2A01G078100 chr6A 79.078 803 148 11 1100 1898 121659137 121659923 5.350000e-148 534.0
30 TraesCS2A01G078100 chr6D 78.702 878 158 16 1025 1898 101202226 101203078 3.170000e-155 558.0
31 TraesCS2A01G078100 chr6B 77.790 878 166 17 1025 1898 185100051 185100903 6.960000e-142 514.0
32 TraesCS2A01G078100 chr2D 90.415 386 33 4 3254 3637 108258790 108259173 4.190000e-139 505.0
33 TraesCS2A01G078100 chr2D 85.507 276 32 3 6 280 99345258 99344990 7.690000e-72 281.0
34 TraesCS2A01G078100 chr5B 88.889 387 40 3 3254 3637 60905119 60905505 1.180000e-129 473.0
35 TraesCS2A01G078100 chr5B 90.217 92 8 1 74 165 681736605 681736695 6.380000e-23 119.0
36 TraesCS2A01G078100 chr7D 88.342 386 43 2 3254 3637 106260341 106260726 2.560000e-126 462.0
37 TraesCS2A01G078100 chr4B 88.041 393 39 7 3247 3635 89406440 89406828 3.310000e-125 459.0
38 TraesCS2A01G078100 chr4B 86.935 199 19 4 91 288 44191863 44192055 2.200000e-52 217.0
39 TraesCS2A01G078100 chr3B 88.281 384 41 4 3257 3637 141803089 141802707 1.190000e-124 457.0
40 TraesCS2A01G078100 chr4A 86.689 293 30 8 1 291 513348770 513349055 2.110000e-82 316.0
41 TraesCS2A01G078100 chr3A 71.429 518 131 15 2024 2534 60472519 60473026 1.770000e-23 121.0
42 TraesCS2A01G078100 chr3D 72.807 228 51 10 2167 2390 48251104 48250884 2.340000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G078100 chr2A 35633385 35637021 3636 False 6717.000000 6717 100.000000 1 3637 1 chr2A.!!$F1 3636
1 TraesCS2A01G078100 chr2A 35650164 35655889 5725 False 949.500000 2163 89.751000 977 3253 4 chr2A.!!$F2 2276
2 TraesCS2A01G078100 chrUn 24899502 24912684 13182 False 941.000000 2848 89.825889 291 3253 9 chrUn.!!$F1 2962
3 TraesCS2A01G078100 chr2B 53665682 53666671 989 False 1216.000000 1216 88.878000 977 1969 1 chr2B.!!$F1 992
4 TraesCS2A01G078100 chr2B 53582443 53585183 2740 False 1003.666667 1526 86.562667 291 2929 3 chr2B.!!$F2 2638
5 TraesCS2A01G078100 chr2B 53658188 53661091 2903 False 765.000000 1279 90.313667 977 3253 3 chr2B.!!$F4 2276
6 TraesCS2A01G078100 chr6A 121871036 121871922 886 False 579.000000 579 78.705000 1025 1927 1 chr6A.!!$F2 902
7 TraesCS2A01G078100 chr6A 121659137 121659923 786 False 534.000000 534 79.078000 1100 1898 1 chr6A.!!$F1 798
8 TraesCS2A01G078100 chr6D 101202226 101203078 852 False 558.000000 558 78.702000 1025 1898 1 chr6D.!!$F1 873
9 TraesCS2A01G078100 chr6B 185100051 185100903 852 False 514.000000 514 77.790000 1025 1898 1 chr6B.!!$F1 873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.099436 GGTTGGCGTCGTATAGTCGT 59.901 55.0 0.00 0.0 34.03 4.34 F
160 161 0.111089 GGCGTCGTATAGTCGTACGG 60.111 60.0 16.52 0.0 45.52 4.02 F
1064 4171 0.325671 CCCCTCCTACTCCTCAAGCA 60.326 60.0 0.00 0.0 0.00 3.91 F
1593 4703 0.544357 TGATCGGGGACAGGTTCAGT 60.544 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 5440 0.114364 TCTGTACCCTGAGGAGCACA 59.886 55.0 0.00 0.0 36.73 4.57 R
1878 5476 0.251386 TTCCCATGGTAAAAGGCGCA 60.251 50.0 10.83 0.0 0.00 6.09 R
1880 5478 0.455815 GCTTCCCATGGTAAAAGGCG 59.544 55.0 11.73 0.0 0.00 5.52 R
3146 11282 0.404040 TCTCCGAAAGCCCAAACCAT 59.596 50.0 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.558313 GGCGCTGTCAGCTTTGAC 59.442 61.111 22.13 5.78 39.60 3.18
19 20 2.856032 CGCTGTCAGCTTTGACGG 59.144 61.111 22.13 9.93 45.39 4.79
20 21 2.671177 CGCTGTCAGCTTTGACGGG 61.671 63.158 22.13 8.20 43.45 5.28
21 22 2.328099 GCTGTCAGCTTTGACGGGG 61.328 63.158 17.89 3.97 43.45 5.73
22 23 1.371183 CTGTCAGCTTTGACGGGGA 59.629 57.895 6.97 0.00 41.43 4.81
23 24 0.250295 CTGTCAGCTTTGACGGGGAA 60.250 55.000 6.97 0.00 41.43 3.97
25 26 0.804989 GTCAGCTTTGACGGGGAATG 59.195 55.000 0.00 0.00 0.00 2.67
26 27 0.322456 TCAGCTTTGACGGGGAATGG 60.322 55.000 0.00 0.00 0.00 3.16
27 28 1.678970 AGCTTTGACGGGGAATGGC 60.679 57.895 0.00 0.00 0.00 4.40
28 29 1.678970 GCTTTGACGGGGAATGGCT 60.679 57.895 0.00 0.00 0.00 4.75
29 30 1.250840 GCTTTGACGGGGAATGGCTT 61.251 55.000 0.00 0.00 0.00 4.35
30 31 0.527565 CTTTGACGGGGAATGGCTTG 59.472 55.000 0.00 0.00 0.00 4.01
32 33 0.608035 TTGACGGGGAATGGCTTGTC 60.608 55.000 0.00 0.00 0.00 3.18
34 35 2.267642 CGGGGAATGGCTTGTCGA 59.732 61.111 0.00 0.00 0.00 4.20
35 36 1.815421 CGGGGAATGGCTTGTCGAG 60.815 63.158 0.00 0.00 0.00 4.04
36 37 1.602237 GGGGAATGGCTTGTCGAGA 59.398 57.895 0.00 0.00 0.00 4.04
37 38 0.181350 GGGGAATGGCTTGTCGAGAT 59.819 55.000 0.00 0.00 0.00 2.75
38 39 1.408822 GGGGAATGGCTTGTCGAGATT 60.409 52.381 0.00 0.00 0.00 2.40
39 40 1.672881 GGGAATGGCTTGTCGAGATTG 59.327 52.381 0.00 0.00 0.00 2.67
40 41 1.672881 GGAATGGCTTGTCGAGATTGG 59.327 52.381 0.00 0.00 0.00 3.16
43 44 0.955428 TGGCTTGTCGAGATTGGCAC 60.955 55.000 7.91 0.00 0.00 5.01
45 46 0.166814 GCTTGTCGAGATTGGCACAC 59.833 55.000 0.00 0.00 39.29 3.82
47 48 0.948623 TTGTCGAGATTGGCACACGG 60.949 55.000 0.00 0.00 39.29 4.94
48 49 2.100631 GTCGAGATTGGCACACGGG 61.101 63.158 0.00 0.00 39.29 5.28
49 50 3.499737 CGAGATTGGCACACGGGC 61.500 66.667 0.00 0.00 39.29 6.13
56 57 3.302344 GGCACACGGGCATTTGGT 61.302 61.111 0.00 0.00 42.77 3.67
58 59 2.650196 CACACGGGCATTTGGTGG 59.350 61.111 0.00 0.00 36.02 4.61
67 68 2.016961 CATTTGGTGGCGGAGATCG 58.983 57.895 0.00 0.00 42.76 3.69
68 69 1.153168 ATTTGGTGGCGGAGATCGG 60.153 57.895 0.00 0.00 39.69 4.18
69 70 2.608970 ATTTGGTGGCGGAGATCGGG 62.609 60.000 0.00 0.00 39.69 5.14
71 72 3.782443 GGTGGCGGAGATCGGGTT 61.782 66.667 0.00 0.00 39.69 4.11
72 73 2.267961 GTGGCGGAGATCGGGTTT 59.732 61.111 0.00 0.00 39.69 3.27
75 76 1.221021 GGCGGAGATCGGGTTTCTT 59.779 57.895 0.00 0.00 39.69 2.52
78 79 2.135933 GCGGAGATCGGGTTTCTTATG 58.864 52.381 0.00 0.00 39.69 1.90
80 81 2.364324 CGGAGATCGGGTTTCTTATGGA 59.636 50.000 0.00 0.00 34.75 3.41
81 82 3.181469 CGGAGATCGGGTTTCTTATGGAA 60.181 47.826 0.00 0.00 34.75 3.53
82 83 4.381411 GGAGATCGGGTTTCTTATGGAAG 58.619 47.826 0.00 0.00 35.16 3.46
83 84 4.101119 GGAGATCGGGTTTCTTATGGAAGA 59.899 45.833 0.00 0.00 40.04 2.87
84 85 5.221742 GGAGATCGGGTTTCTTATGGAAGAT 60.222 44.000 0.00 0.00 41.40 2.40
85 86 5.615289 AGATCGGGTTTCTTATGGAAGATG 58.385 41.667 0.00 0.00 41.40 2.90
86 87 4.150897 TCGGGTTTCTTATGGAAGATGG 57.849 45.455 0.00 0.00 41.40 3.51
87 88 3.778075 TCGGGTTTCTTATGGAAGATGGA 59.222 43.478 0.00 0.00 41.40 3.41
88 89 4.130118 CGGGTTTCTTATGGAAGATGGAG 58.870 47.826 0.00 0.00 41.40 3.86
90 91 5.372373 GGGTTTCTTATGGAAGATGGAGAG 58.628 45.833 0.00 0.00 41.40 3.20
92 93 6.418946 GGTTTCTTATGGAAGATGGAGAGTT 58.581 40.000 0.00 0.00 41.40 3.01
93 94 6.887002 GGTTTCTTATGGAAGATGGAGAGTTT 59.113 38.462 0.00 0.00 41.40 2.66
94 95 8.047310 GGTTTCTTATGGAAGATGGAGAGTTTA 58.953 37.037 0.00 0.00 41.40 2.01
97 98 9.838339 TTCTTATGGAAGATGGAGAGTTTATTC 57.162 33.333 0.00 0.00 41.40 1.75
98 99 8.432805 TCTTATGGAAGATGGAGAGTTTATTCC 58.567 37.037 0.00 0.00 36.75 3.01
99 100 5.373812 TGGAAGATGGAGAGTTTATTCCC 57.626 43.478 0.00 0.00 35.03 3.97
100 101 5.039645 TGGAAGATGGAGAGTTTATTCCCT 58.960 41.667 0.00 0.00 35.03 4.20
101 102 5.492524 TGGAAGATGGAGAGTTTATTCCCTT 59.507 40.000 0.00 0.00 35.03 3.95
102 103 5.825151 GGAAGATGGAGAGTTTATTCCCTTG 59.175 44.000 0.00 0.00 32.29 3.61
103 104 6.353082 GGAAGATGGAGAGTTTATTCCCTTGA 60.353 42.308 0.00 0.00 32.29 3.02
104 105 6.642733 AGATGGAGAGTTTATTCCCTTGAA 57.357 37.500 0.00 0.00 32.29 2.69
105 106 7.032598 AGATGGAGAGTTTATTCCCTTGAAA 57.967 36.000 0.00 0.00 33.32 2.69
107 108 8.118600 AGATGGAGAGTTTATTCCCTTGAAAAT 58.881 33.333 0.00 0.00 33.32 1.82
109 110 9.768215 ATGGAGAGTTTATTCCCTTGAAAATTA 57.232 29.630 0.00 0.00 33.32 1.40
110 111 9.594936 TGGAGAGTTTATTCCCTTGAAAATTAA 57.405 29.630 0.00 0.00 33.32 1.40
113 114 9.908152 AGAGTTTATTCCCTTGAAAATTAAACG 57.092 29.630 0.00 0.00 37.92 3.60
114 115 9.687210 GAGTTTATTCCCTTGAAAATTAAACGT 57.313 29.630 0.00 0.00 37.92 3.99
115 116 9.471084 AGTTTATTCCCTTGAAAATTAAACGTG 57.529 29.630 0.00 0.00 37.92 4.49
117 118 9.685828 TTTATTCCCTTGAAAATTAAACGTGAG 57.314 29.630 0.00 0.00 33.32 3.51
118 119 5.116069 TCCCTTGAAAATTAAACGTGAGC 57.884 39.130 0.00 0.00 0.00 4.26
119 120 4.580995 TCCCTTGAAAATTAAACGTGAGCA 59.419 37.500 0.00 0.00 0.00 4.26
120 121 5.067936 TCCCTTGAAAATTAAACGTGAGCAA 59.932 36.000 0.00 0.00 0.00 3.91
121 122 5.751028 CCCTTGAAAATTAAACGTGAGCAAA 59.249 36.000 0.00 0.00 0.00 3.68
124 125 8.973378 CCTTGAAAATTAAACGTGAGCAAAATA 58.027 29.630 0.00 0.00 0.00 1.40
125 126 9.993881 CTTGAAAATTAAACGTGAGCAAAATAG 57.006 29.630 0.00 0.00 0.00 1.73
126 127 8.514136 TGAAAATTAAACGTGAGCAAAATAGG 57.486 30.769 0.00 0.00 0.00 2.57
127 128 7.596995 TGAAAATTAAACGTGAGCAAAATAGGG 59.403 33.333 0.00 0.00 0.00 3.53
130 131 2.851263 ACGTGAGCAAAATAGGGTGA 57.149 45.000 0.00 0.00 0.00 4.02
131 132 2.423577 ACGTGAGCAAAATAGGGTGAC 58.576 47.619 0.00 0.00 0.00 3.67
132 133 2.224426 ACGTGAGCAAAATAGGGTGACA 60.224 45.455 0.00 0.00 0.00 3.58
135 136 4.265073 GTGAGCAAAATAGGGTGACAGAT 58.735 43.478 0.00 0.00 0.00 2.90
137 138 3.535561 AGCAAAATAGGGTGACAGATCG 58.464 45.455 0.00 0.00 0.00 3.69
141 142 3.543680 AATAGGGTGACAGATCGGTTG 57.456 47.619 0.00 0.00 0.00 3.77
142 143 1.191535 TAGGGTGACAGATCGGTTGG 58.808 55.000 0.00 0.00 0.00 3.77
143 144 1.745489 GGGTGACAGATCGGTTGGC 60.745 63.158 0.00 0.00 0.00 4.52
144 145 2.100631 GGTGACAGATCGGTTGGCG 61.101 63.158 0.00 0.00 0.00 5.69
145 146 1.374252 GTGACAGATCGGTTGGCGT 60.374 57.895 0.00 0.00 0.00 5.68
147 148 2.126071 ACAGATCGGTTGGCGTCG 60.126 61.111 0.00 0.00 0.00 5.12
148 149 2.126071 CAGATCGGTTGGCGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
149 150 1.138036 CAGATCGGTTGGCGTCGTA 59.862 57.895 0.00 0.00 0.00 3.43
150 151 0.248907 CAGATCGGTTGGCGTCGTAT 60.249 55.000 0.00 0.00 0.00 3.06
153 154 1.002033 GATCGGTTGGCGTCGTATAGT 60.002 52.381 0.00 0.00 0.00 2.12
154 155 0.378257 TCGGTTGGCGTCGTATAGTC 59.622 55.000 0.00 0.00 0.00 2.59
155 156 0.927083 CGGTTGGCGTCGTATAGTCG 60.927 60.000 0.00 0.00 34.61 4.18
156 157 0.099436 GGTTGGCGTCGTATAGTCGT 59.901 55.000 0.00 0.00 34.03 4.34
160 161 0.111089 GGCGTCGTATAGTCGTACGG 60.111 60.000 16.52 0.00 45.52 4.02
161 162 0.852777 GCGTCGTATAGTCGTACGGA 59.147 55.000 16.52 1.38 45.52 4.69
163 164 2.385315 CGTCGTATAGTCGTACGGAGA 58.615 52.381 16.52 0.59 45.52 3.71
164 165 2.403368 CGTCGTATAGTCGTACGGAGAG 59.597 54.545 16.52 1.34 45.52 3.20
165 166 2.154772 GTCGTATAGTCGTACGGAGAGC 59.845 54.545 16.52 1.29 45.52 4.09
168 169 1.307097 ATAGTCGTACGGAGAGCACC 58.693 55.000 16.52 0.00 0.00 5.01
172 173 1.154016 CGTACGGAGAGCACCACTG 60.154 63.158 7.57 0.00 0.00 3.66
173 174 1.446272 GTACGGAGAGCACCACTGC 60.446 63.158 0.00 0.00 44.63 4.40
177 178 2.646175 GGAGAGCACCACTGCCGTA 61.646 63.158 0.00 0.00 45.53 4.02
196 197 5.661458 CCGTATGGCTACAAATATAGAGGG 58.339 45.833 0.00 0.00 0.00 4.30
197 198 5.109903 CGTATGGCTACAAATATAGAGGGC 58.890 45.833 0.00 0.00 0.00 5.19
198 199 4.576330 ATGGCTACAAATATAGAGGGCC 57.424 45.455 0.00 0.00 38.87 5.80
199 200 2.301870 TGGCTACAAATATAGAGGGCCG 59.698 50.000 0.00 0.00 40.98 6.13
200 201 2.347731 GCTACAAATATAGAGGGCCGC 58.652 52.381 0.00 0.00 0.00 6.53
201 202 2.935676 GCTACAAATATAGAGGGCCGCC 60.936 54.545 2.73 0.00 0.00 6.13
203 204 1.705186 ACAAATATAGAGGGCCGCCAT 59.295 47.619 12.58 3.11 0.00 4.40
204 205 2.086869 CAAATATAGAGGGCCGCCATG 58.913 52.381 12.58 0.00 0.00 3.66
205 206 1.362224 AATATAGAGGGCCGCCATGT 58.638 50.000 12.58 5.12 0.00 3.21
206 207 2.247699 ATATAGAGGGCCGCCATGTA 57.752 50.000 12.58 7.69 0.00 2.29
207 208 2.247699 TATAGAGGGCCGCCATGTAT 57.752 50.000 16.87 16.87 29.44 2.29
208 209 1.362224 ATAGAGGGCCGCCATGTATT 58.638 50.000 12.58 0.00 0.00 1.89
209 210 0.396435 TAGAGGGCCGCCATGTATTG 59.604 55.000 12.58 0.00 0.00 1.90
210 211 1.148273 GAGGGCCGCCATGTATTGA 59.852 57.895 12.58 0.00 0.00 2.57
211 212 0.886490 GAGGGCCGCCATGTATTGAG 60.886 60.000 12.58 0.00 0.00 3.02
212 213 1.898574 GGGCCGCCATGTATTGAGG 60.899 63.158 12.58 0.00 0.00 3.86
213 214 1.148273 GGCCGCCATGTATTGAGGA 59.852 57.895 3.91 0.00 0.00 3.71
216 217 1.956477 GCCGCCATGTATTGAGGAATT 59.044 47.619 0.00 0.00 0.00 2.17
217 218 2.362077 GCCGCCATGTATTGAGGAATTT 59.638 45.455 0.00 0.00 0.00 1.82
219 220 3.885297 CCGCCATGTATTGAGGAATTTCT 59.115 43.478 0.00 0.00 0.00 2.52
220 221 4.261322 CCGCCATGTATTGAGGAATTTCTG 60.261 45.833 0.00 0.00 0.00 3.02
221 222 4.614946 GCCATGTATTGAGGAATTTCTGC 58.385 43.478 0.00 0.00 0.00 4.26
222 223 4.500375 GCCATGTATTGAGGAATTTCTGCC 60.500 45.833 0.00 0.00 0.00 4.85
223 224 4.891756 CCATGTATTGAGGAATTTCTGCCT 59.108 41.667 0.00 0.00 37.18 4.75
229 230 2.545731 GAGGAATTTCTGCCTCTCGAC 58.454 52.381 0.00 0.00 45.72 4.20
230 231 2.167487 GAGGAATTTCTGCCTCTCGACT 59.833 50.000 0.00 0.00 45.72 4.18
231 232 2.093764 AGGAATTTCTGCCTCTCGACTG 60.094 50.000 0.00 0.00 0.00 3.51
232 233 2.354203 GGAATTTCTGCCTCTCGACTGT 60.354 50.000 0.00 0.00 0.00 3.55
235 236 4.744795 ATTTCTGCCTCTCGACTGTAAT 57.255 40.909 0.00 0.00 0.00 1.89
237 238 3.784701 TCTGCCTCTCGACTGTAATTC 57.215 47.619 0.00 0.00 0.00 2.17
238 239 3.357203 TCTGCCTCTCGACTGTAATTCT 58.643 45.455 0.00 0.00 0.00 2.40
241 242 3.258372 TGCCTCTCGACTGTAATTCTGTT 59.742 43.478 0.00 0.00 0.00 3.16
243 244 5.127194 TGCCTCTCGACTGTAATTCTGTTAT 59.873 40.000 0.00 0.00 0.00 1.89
247 248 7.376336 CCTCTCGACTGTAATTCTGTTATAACG 59.624 40.741 10.92 6.19 0.00 3.18
248 249 7.191551 TCTCGACTGTAATTCTGTTATAACGG 58.808 38.462 16.99 16.99 36.62 4.44
268 269 6.224420 ACGGAATAAAACTCTTTTCACTCG 57.776 37.500 0.00 0.00 34.19 4.18
270 271 5.333798 CGGAATAAAACTCTTTTCACTCGCA 60.334 40.000 0.00 0.00 34.19 5.10
271 272 6.435428 GGAATAAAACTCTTTTCACTCGCAA 58.565 36.000 0.00 0.00 34.19 4.85
273 274 7.434013 GGAATAAAACTCTTTTCACTCGCAAAA 59.566 33.333 0.00 0.00 34.19 2.44
274 275 8.696410 AATAAAACTCTTTTCACTCGCAAAAA 57.304 26.923 0.00 0.00 34.19 1.94
332 333 3.457610 ACAATGCCCTTGTTCACAAAG 57.542 42.857 0.00 0.00 45.98 2.77
367 375 4.447389 CGGTGTAAAATTTGCTTCCTTTGG 59.553 41.667 0.00 0.00 0.00 3.28
419 427 3.186613 GCCGATTCTCGTGTTCTTTTTCT 59.813 43.478 0.00 0.00 38.40 2.52
502 510 2.598589 CTTTGTTGCGTGATTGGGATG 58.401 47.619 0.00 0.00 0.00 3.51
531 542 3.077556 GCGCCCTCCTGGAAGAGA 61.078 66.667 0.00 0.00 35.82 3.10
573 584 2.685366 ATGGAGGTGGCCATGGTG 59.315 61.111 9.72 0.00 46.62 4.17
576 626 1.978617 GGAGGTGGCCATGGTGTTG 60.979 63.158 9.72 0.00 0.00 3.33
588 638 0.466124 TGGTGTTGATGTGTGGACGA 59.534 50.000 0.00 0.00 0.00 4.20
590 640 1.531149 GGTGTTGATGTGTGGACGAAG 59.469 52.381 0.00 0.00 0.00 3.79
591 641 1.531149 GTGTTGATGTGTGGACGAAGG 59.469 52.381 0.00 0.00 0.00 3.46
592 642 1.156736 GTTGATGTGTGGACGAAGGG 58.843 55.000 0.00 0.00 0.00 3.95
616 666 3.254654 ACGATCGCGCAACCATCG 61.255 61.111 21.10 21.10 44.06 3.84
682 743 2.611971 GGCCGCCGTTCATGATTATAGA 60.612 50.000 0.00 0.00 0.00 1.98
683 744 3.064207 GCCGCCGTTCATGATTATAGAA 58.936 45.455 0.00 0.00 0.00 2.10
684 745 3.684788 GCCGCCGTTCATGATTATAGAAT 59.315 43.478 0.00 0.00 0.00 2.40
731 792 0.452122 CGGAAAATGTTGACGCGTCC 60.452 55.000 34.34 21.22 0.00 4.79
801 862 2.126580 GGAAGACGACGACACGGG 60.127 66.667 0.00 0.00 37.61 5.28
803 864 4.695231 AAGACGACGACACGGGCG 62.695 66.667 0.00 0.00 37.61 6.13
864 986 5.220912 CGTGCAATCACTCATACCATTCAAT 60.221 40.000 0.00 0.00 40.99 2.57
869 991 5.598416 TCACTCATACCATTCAATCGAGT 57.402 39.130 0.00 0.00 32.67 4.18
927 1053 0.888619 TGCCGCCGATCTTATAGGAG 59.111 55.000 0.00 0.00 0.00 3.69
929 1055 1.133407 GCCGCCGATCTTATAGGAGAG 59.867 57.143 0.00 0.00 0.00 3.20
933 1062 3.119316 CGCCGATCTTATAGGAGAGCATT 60.119 47.826 0.00 0.00 31.70 3.56
956 1085 2.408022 GTCAGTCGACGATCCCCG 59.592 66.667 10.46 0.00 45.44 5.73
988 2979 1.736681 CAGTGCCTAGCTCAAGAAAGC 59.263 52.381 0.00 0.00 42.82 3.51
1018 4125 1.756950 ATGGCCATGGAGCAAGCAG 60.757 57.895 20.04 0.00 0.00 4.24
1038 4145 4.499183 CAGTTTATCTCGTCTTGGCTCTT 58.501 43.478 0.00 0.00 0.00 2.85
1064 4171 0.325671 CCCCTCCTACTCCTCAAGCA 60.326 60.000 0.00 0.00 0.00 3.91
1347 4454 1.208052 ACCACCAAGATCCTCATGTCG 59.792 52.381 0.00 0.00 0.00 4.35
1593 4703 0.544357 TGATCGGGGACAGGTTCAGT 60.544 55.000 0.00 0.00 0.00 3.41
1684 5282 3.634157 TTCCCCTCATCCCGGCTCA 62.634 63.158 0.00 0.00 0.00 4.26
1842 5440 2.334023 GAGCAGGAGGACCTATTGGAT 58.666 52.381 0.00 0.00 45.94 3.41
1855 5453 0.549950 ATTGGATGTGCTCCTCAGGG 59.450 55.000 0.00 0.00 45.21 4.45
1878 5476 1.152881 GAAGGAAGGCGGCCATGAT 60.153 57.895 23.09 3.89 0.00 2.45
1880 5478 3.599704 GGAAGGCGGCCATGATGC 61.600 66.667 23.09 5.85 0.00 3.91
1898 5496 0.455815 GCGCCTTTTACCATGGGAAG 59.544 55.000 18.09 15.85 0.00 3.46
2017 5719 7.745620 TTGGAAGTTAAATGACCTTCTCTTC 57.254 36.000 0.00 0.00 0.00 2.87
2031 5733 4.405358 CCTTCTCTTCTATTCTGCAGGACT 59.595 45.833 15.13 1.19 0.00 3.85
2042 5744 1.537202 CTGCAGGACTTGTTTAGTGCC 59.463 52.381 5.57 0.00 45.60 5.01
2154 5856 1.209747 GTAGCCACCTACAAGGGAAGG 59.790 57.143 0.00 0.00 42.81 3.46
2197 5899 2.637382 TGGCTGACCTCAAGTACATGAA 59.363 45.455 0.00 0.00 36.63 2.57
2408 6110 1.301479 GTCGGGCGAAGTGGACTTT 60.301 57.895 0.00 0.00 36.11 2.66
2420 6122 5.074746 AAGTGGACTTTAAGGGAACCAAT 57.925 39.130 0.00 0.00 42.73 3.16
2659 10601 2.983402 ATGCTTCATATGTCGCATGC 57.017 45.000 23.73 7.91 41.17 4.06
2677 10619 0.676184 GCTGGATGCCATCGACTAGA 59.324 55.000 0.00 0.00 35.15 2.43
2703 10646 3.739519 GCTAGATCGAACATTCCAGCTGT 60.740 47.826 13.81 0.00 0.00 4.40
2709 10652 7.896811 AGATCGAACATTCCAGCTGTATATTA 58.103 34.615 13.81 0.00 0.00 0.98
2743 10709 3.191162 CCAAGTGTGTCATGGTGGTAATG 59.809 47.826 0.00 0.00 31.08 1.90
2853 10918 9.048446 CATCACCAATCTGATTTTCTTTGTTTT 57.952 29.630 0.00 0.00 0.00 2.43
2909 10974 2.509964 ACTCCTTGTGTGAACTCCCTTT 59.490 45.455 0.00 0.00 0.00 3.11
2951 11017 2.242882 ACCGTAGTGAGGGTATTGGT 57.757 50.000 0.00 0.00 42.13 3.67
2976 11042 1.080298 CCGTACCGTCAACCACCTC 60.080 63.158 0.00 0.00 0.00 3.85
2990 11056 4.664688 ACCACCTCATTGGAGAATCTTT 57.335 40.909 0.00 0.00 44.26 2.52
3033 11099 8.964476 TGGAAATACCATCTTCAAGAACTATC 57.036 34.615 0.00 0.00 44.64 2.08
3069 11135 7.715265 ACAACTGACTAAGAATGTGTACTTG 57.285 36.000 0.00 0.00 31.35 3.16
3075 11141 5.227908 ACTAAGAATGTGTACTTGGTGTCG 58.772 41.667 0.00 0.00 36.70 4.35
3093 11159 4.563553 GTCGCCAAGACGTCTACGAAGT 62.564 54.545 28.60 9.20 42.29 3.01
3146 11282 1.531149 GCTAAGTCAACAAGCAGCGAA 59.469 47.619 0.00 0.00 36.26 4.70
3149 11285 0.877071 AGTCAACAAGCAGCGAATGG 59.123 50.000 0.00 0.00 0.00 3.16
3155 11291 3.685435 AGCAGCGAATGGTTTGGG 58.315 55.556 0.00 0.00 35.67 4.12
3218 11354 6.859420 AGTTTGCAAACAGTTTTGAAAAGT 57.141 29.167 36.46 14.18 46.61 2.66
3236 11372 6.943718 TGAAAAGTCTTTTCCGTACCCAATAT 59.056 34.615 27.47 0.00 46.49 1.28
3253 11389 5.448768 CCCAATATATAGGTACGCTCGACAG 60.449 48.000 0.00 0.00 0.00 3.51
3254 11390 5.448768 CCAATATATAGGTACGCTCGACAGG 60.449 48.000 0.00 0.00 0.00 4.00
3255 11391 1.888215 TATAGGTACGCTCGACAGGG 58.112 55.000 0.00 0.00 38.57 4.45
3256 11392 0.182061 ATAGGTACGCTCGACAGGGA 59.818 55.000 0.00 0.00 36.41 4.20
3257 11393 0.035152 TAGGTACGCTCGACAGGGAA 60.035 55.000 0.00 0.00 36.41 3.97
3260 11396 1.405121 GGTACGCTCGACAGGGAAAAT 60.405 52.381 0.00 0.00 36.41 1.82
3261 11397 2.159198 GGTACGCTCGACAGGGAAAATA 60.159 50.000 0.00 0.00 36.41 1.40
3262 11398 2.981859 ACGCTCGACAGGGAAAATAT 57.018 45.000 0.00 0.00 36.41 1.28
3263 11399 2.822764 ACGCTCGACAGGGAAAATATC 58.177 47.619 0.00 0.00 36.41 1.63
3266 11402 3.185188 CGCTCGACAGGGAAAATATCATG 59.815 47.826 0.00 0.00 34.38 3.07
3267 11403 4.130118 GCTCGACAGGGAAAATATCATGT 58.870 43.478 0.00 0.00 33.59 3.21
3268 11404 4.024556 GCTCGACAGGGAAAATATCATGTG 60.025 45.833 0.00 0.00 31.73 3.21
3270 11406 5.928976 TCGACAGGGAAAATATCATGTGAT 58.071 37.500 0.68 0.68 38.51 3.06
3272 11408 6.929049 TCGACAGGGAAAATATCATGTGATAC 59.071 38.462 4.93 0.00 39.57 2.24
3273 11409 6.147821 CGACAGGGAAAATATCATGTGATACC 59.852 42.308 4.93 2.66 39.57 2.73
3274 11410 6.910191 ACAGGGAAAATATCATGTGATACCA 58.090 36.000 4.93 0.00 39.57 3.25
3275 11411 7.000472 ACAGGGAAAATATCATGTGATACCAG 59.000 38.462 4.93 2.32 39.57 4.00
3276 11412 7.000472 CAGGGAAAATATCATGTGATACCAGT 59.000 38.462 4.93 0.00 39.57 4.00
3278 11414 6.147821 GGGAAAATATCATGTGATACCAGTCG 59.852 42.308 4.93 0.00 39.57 4.18
3280 11416 7.226720 GGAAAATATCATGTGATACCAGTCGTT 59.773 37.037 4.93 0.00 39.57 3.85
3281 11417 9.256477 GAAAATATCATGTGATACCAGTCGTTA 57.744 33.333 4.93 0.00 39.57 3.18
3282 11418 8.818141 AAATATCATGTGATACCAGTCGTTAG 57.182 34.615 4.93 0.00 39.57 2.34
3283 11419 7.761038 ATATCATGTGATACCAGTCGTTAGA 57.239 36.000 4.93 0.00 39.57 2.10
3285 11421 5.831997 TCATGTGATACCAGTCGTTAGATG 58.168 41.667 0.00 0.00 0.00 2.90
3287 11423 6.265422 TCATGTGATACCAGTCGTTAGATGAT 59.735 38.462 0.00 0.00 0.00 2.45
3289 11425 6.967135 TGTGATACCAGTCGTTAGATGATAC 58.033 40.000 0.00 0.00 0.00 2.24
3290 11426 6.016527 TGTGATACCAGTCGTTAGATGATACC 60.017 42.308 0.00 0.00 0.00 2.73
3293 11429 5.201713 ACCAGTCGTTAGATGATACCATG 57.798 43.478 0.00 0.00 32.09 3.66
3294 11430 4.893524 ACCAGTCGTTAGATGATACCATGA 59.106 41.667 0.00 0.00 32.09 3.07
3295 11431 5.540337 ACCAGTCGTTAGATGATACCATGAT 59.460 40.000 0.00 0.00 32.09 2.45
3296 11432 6.719829 ACCAGTCGTTAGATGATACCATGATA 59.280 38.462 0.00 0.00 32.09 2.15
3297 11433 7.030165 CCAGTCGTTAGATGATACCATGATAC 58.970 42.308 0.00 0.00 32.09 2.24
3298 11434 7.030165 CAGTCGTTAGATGATACCATGATACC 58.970 42.308 0.00 0.00 32.09 2.73
3299 11435 6.719829 AGTCGTTAGATGATACCATGATACCA 59.280 38.462 0.00 0.00 32.09 3.25
3301 11437 7.328737 GTCGTTAGATGATACCATGATACCAAC 59.671 40.741 0.00 0.00 32.09 3.77
3302 11438 7.232737 TCGTTAGATGATACCATGATACCAACT 59.767 37.037 0.00 0.00 32.09 3.16
3303 11439 7.872993 CGTTAGATGATACCATGATACCAACTT 59.127 37.037 0.00 0.00 32.09 2.66
3304 11440 8.993121 GTTAGATGATACCATGATACCAACTTG 58.007 37.037 0.00 0.00 32.09 3.16
3305 11441 6.000219 AGATGATACCATGATACCAACTTGC 59.000 40.000 0.00 0.00 32.09 4.01
3306 11442 5.109500 TGATACCATGATACCAACTTGCA 57.891 39.130 0.00 0.00 0.00 4.08
3307 11443 5.504853 TGATACCATGATACCAACTTGCAA 58.495 37.500 0.00 0.00 0.00 4.08
3308 11444 5.948758 TGATACCATGATACCAACTTGCAAA 59.051 36.000 0.00 0.00 0.00 3.68
3309 11445 6.435591 TGATACCATGATACCAACTTGCAAAA 59.564 34.615 0.00 0.00 0.00 2.44
3310 11446 4.881920 ACCATGATACCAACTTGCAAAAC 58.118 39.130 0.00 0.00 0.00 2.43
3311 11447 4.588528 ACCATGATACCAACTTGCAAAACT 59.411 37.500 0.00 0.00 0.00 2.66
3312 11448 5.163513 CCATGATACCAACTTGCAAAACTC 58.836 41.667 0.00 0.00 0.00 3.01
3313 11449 5.278907 CCATGATACCAACTTGCAAAACTCA 60.279 40.000 0.00 0.00 0.00 3.41
3314 11450 5.843673 TGATACCAACTTGCAAAACTCAA 57.156 34.783 0.00 0.00 0.00 3.02
3315 11451 6.214191 TGATACCAACTTGCAAAACTCAAA 57.786 33.333 0.00 0.00 0.00 2.69
3316 11452 6.815089 TGATACCAACTTGCAAAACTCAAAT 58.185 32.000 0.00 0.00 0.00 2.32
3317 11453 7.271511 TGATACCAACTTGCAAAACTCAAATT 58.728 30.769 0.00 0.00 0.00 1.82
3318 11454 7.768120 TGATACCAACTTGCAAAACTCAAATTT 59.232 29.630 0.00 0.00 0.00 1.82
3319 11455 9.255304 GATACCAACTTGCAAAACTCAAATTTA 57.745 29.630 0.00 0.00 0.00 1.40
3320 11456 7.913674 ACCAACTTGCAAAACTCAAATTTAA 57.086 28.000 0.00 0.00 0.00 1.52
3321 11457 8.329203 ACCAACTTGCAAAACTCAAATTTAAA 57.671 26.923 0.00 0.00 0.00 1.52
3322 11458 8.450180 ACCAACTTGCAAAACTCAAATTTAAAG 58.550 29.630 0.00 0.00 0.00 1.85
3323 11459 8.663911 CCAACTTGCAAAACTCAAATTTAAAGA 58.336 29.630 0.00 0.00 0.00 2.52
3326 11462 9.382275 ACTTGCAAAACTCAAATTTAAAGATGT 57.618 25.926 0.00 0.00 0.00 3.06
3327 11463 9.853921 CTTGCAAAACTCAAATTTAAAGATGTC 57.146 29.630 0.00 0.00 0.00 3.06
3328 11464 8.939201 TGCAAAACTCAAATTTAAAGATGTCA 57.061 26.923 6.73 0.00 0.00 3.58
3329 11465 9.376075 TGCAAAACTCAAATTTAAAGATGTCAA 57.624 25.926 6.73 0.00 0.00 3.18
3370 11506 8.929260 ATCATGGATGTTCACAATACATATGT 57.071 30.769 13.93 13.93 36.41 2.29
3371 11507 8.382030 TCATGGATGTTCACAATACATATGTC 57.618 34.615 12.68 0.00 36.41 3.06
3372 11508 7.992033 TCATGGATGTTCACAATACATATGTCA 59.008 33.333 12.68 1.67 36.41 3.58
3373 11509 8.623030 CATGGATGTTCACAATACATATGTCAA 58.377 33.333 12.68 0.00 36.41 3.18
3374 11510 7.984391 TGGATGTTCACAATACATATGTCAAC 58.016 34.615 12.68 7.51 36.41 3.18
3375 11511 7.609532 TGGATGTTCACAATACATATGTCAACA 59.390 33.333 12.68 12.32 44.09 3.33
3376 11512 8.458052 GGATGTTCACAATACATATGTCAACAA 58.542 33.333 12.68 0.00 43.38 2.83
3377 11513 9.277565 GATGTTCACAATACATATGTCAACAAC 57.722 33.333 12.68 9.44 43.38 3.32
3378 11514 7.589395 TGTTCACAATACATATGTCAACAACC 58.411 34.615 12.68 0.00 38.55 3.77
3379 11515 6.751514 TCACAATACATATGTCAACAACCC 57.248 37.500 12.68 0.00 0.00 4.11
3380 11516 5.650266 TCACAATACATATGTCAACAACCCC 59.350 40.000 12.68 0.00 0.00 4.95
3381 11517 5.652014 CACAATACATATGTCAACAACCCCT 59.348 40.000 12.68 0.00 0.00 4.79
3382 11518 6.826231 CACAATACATATGTCAACAACCCCTA 59.174 38.462 12.68 0.00 0.00 3.53
3383 11519 7.338196 CACAATACATATGTCAACAACCCCTAA 59.662 37.037 12.68 0.00 0.00 2.69
3384 11520 7.891183 ACAATACATATGTCAACAACCCCTAAA 59.109 33.333 12.68 0.00 0.00 1.85
3385 11521 8.744652 CAATACATATGTCAACAACCCCTAAAA 58.255 33.333 12.68 0.00 0.00 1.52
3386 11522 8.887264 ATACATATGTCAACAACCCCTAAAAA 57.113 30.769 12.68 0.00 0.00 1.94
3414 11550 8.654230 TCAGATCAAAATTCGAAATAGAGAGG 57.346 34.615 0.00 0.00 0.00 3.69
3415 11551 7.712639 TCAGATCAAAATTCGAAATAGAGAGGG 59.287 37.037 0.00 0.00 0.00 4.30
3416 11552 7.712639 CAGATCAAAATTCGAAATAGAGAGGGA 59.287 37.037 0.00 0.00 0.00 4.20
3417 11553 7.930865 AGATCAAAATTCGAAATAGAGAGGGAG 59.069 37.037 0.00 0.00 0.00 4.30
3418 11554 7.182817 TCAAAATTCGAAATAGAGAGGGAGA 57.817 36.000 0.00 0.00 0.00 3.71
3419 11555 7.620880 TCAAAATTCGAAATAGAGAGGGAGAA 58.379 34.615 0.00 0.00 0.00 2.87
3420 11556 8.100791 TCAAAATTCGAAATAGAGAGGGAGAAA 58.899 33.333 0.00 0.00 0.00 2.52
3421 11557 8.394121 CAAAATTCGAAATAGAGAGGGAGAAAG 58.606 37.037 0.00 0.00 0.00 2.62
3422 11558 7.425224 AATTCGAAATAGAGAGGGAGAAAGA 57.575 36.000 0.00 0.00 0.00 2.52
3423 11559 6.852420 TTCGAAATAGAGAGGGAGAAAGAA 57.148 37.500 0.00 0.00 0.00 2.52
3424 11560 6.852420 TCGAAATAGAGAGGGAGAAAGAAA 57.148 37.500 0.00 0.00 0.00 2.52
3425 11561 7.241042 TCGAAATAGAGAGGGAGAAAGAAAA 57.759 36.000 0.00 0.00 0.00 2.29
3426 11562 7.676947 TCGAAATAGAGAGGGAGAAAGAAAAA 58.323 34.615 0.00 0.00 0.00 1.94
3449 11585 9.865321 AAAAAGACAAATCCATCATGAATAGTG 57.135 29.630 0.00 0.00 0.00 2.74
3450 11586 8.585471 AAAGACAAATCCATCATGAATAGTGT 57.415 30.769 0.00 0.00 0.00 3.55
3451 11587 7.798596 AGACAAATCCATCATGAATAGTGTC 57.201 36.000 0.00 9.16 33.51 3.67
3454 11590 8.352137 ACAAATCCATCATGAATAGTGTCAAA 57.648 30.769 0.00 0.00 0.00 2.69
3459 11595 8.272545 TCCATCATGAATAGTGTCAAAAGAAG 57.727 34.615 0.00 0.00 0.00 2.85
3461 11597 8.180267 CCATCATGAATAGTGTCAAAAGAAGAC 58.820 37.037 0.00 0.00 36.55 3.01
3466 11602 9.956720 ATGAATAGTGTCAAAAGAAGACAAAAG 57.043 29.630 0.00 0.00 46.50 2.27
3468 11604 5.904362 AGTGTCAAAAGAAGACAAAAGCT 57.096 34.783 0.00 0.00 46.50 3.74
3470 11606 7.020914 AGTGTCAAAAGAAGACAAAAGCTAG 57.979 36.000 0.00 0.00 46.50 3.42
3473 11609 8.131731 GTGTCAAAAGAAGACAAAAGCTAGAAT 58.868 33.333 0.00 0.00 46.50 2.40
3475 11611 7.114106 GTCAAAAGAAGACAAAAGCTAGAATGC 59.886 37.037 0.00 0.00 36.06 3.56
3478 11614 4.457257 AGAAGACAAAAGCTAGAATGCCAC 59.543 41.667 0.00 0.00 0.00 5.01
3480 11616 5.165961 AGACAAAAGCTAGAATGCCACTA 57.834 39.130 0.00 0.00 0.00 2.74
3481 11617 5.749462 AGACAAAAGCTAGAATGCCACTAT 58.251 37.500 0.00 0.00 0.00 2.12
3483 11619 6.317391 AGACAAAAGCTAGAATGCCACTATTC 59.683 38.462 0.00 0.00 37.34 1.75
3484 11620 5.945784 ACAAAAGCTAGAATGCCACTATTCA 59.054 36.000 0.00 0.00 39.08 2.57
3485 11621 6.127897 ACAAAAGCTAGAATGCCACTATTCAC 60.128 38.462 0.00 0.00 39.08 3.18
3490 11626 6.877855 AGCTAGAATGCCACTATTCACATATG 59.122 38.462 0.00 0.00 39.08 1.78
3526 11662 9.796120 TTTTTGTTTCTCTTGTGTATTTCGAAT 57.204 25.926 0.00 0.00 0.00 3.34
3528 11664 9.796120 TTTGTTTCTCTTGTGTATTTCGAATTT 57.204 25.926 0.00 0.00 0.00 1.82
3529 11665 9.796120 TTGTTTCTCTTGTGTATTTCGAATTTT 57.204 25.926 0.00 0.00 0.00 1.82
3530 11666 9.232082 TGTTTCTCTTGTGTATTTCGAATTTTG 57.768 29.630 0.00 0.00 0.00 2.44
3531 11667 9.445786 GTTTCTCTTGTGTATTTCGAATTTTGA 57.554 29.630 0.00 0.00 0.00 2.69
3533 11669 9.825972 TTCTCTTGTGTATTTCGAATTTTGATC 57.174 29.630 0.00 0.00 0.00 2.92
3535 11671 9.270576 CTCTTGTGTATTTCGAATTTTGATCTG 57.729 33.333 0.00 0.00 0.00 2.90
3537 11673 9.611284 CTTGTGTATTTCGAATTTTGATCTGAA 57.389 29.630 0.00 0.00 0.00 3.02
3563 11699 6.489127 TTTTAAGGGTTGTCGACATATGTG 57.511 37.500 20.80 6.04 0.00 3.21
3566 11702 3.334691 AGGGTTGTCGACATATGTGTTG 58.665 45.455 20.80 3.47 39.09 3.33
3567 11703 3.071479 GGGTTGTCGACATATGTGTTGT 58.929 45.455 20.80 0.00 40.13 3.32
3569 11705 3.743911 GGTTGTCGACATATGTGTTGTGA 59.256 43.478 20.80 0.00 40.13 3.58
3570 11706 4.212425 GGTTGTCGACATATGTGTTGTGAA 59.788 41.667 20.80 0.00 40.13 3.18
3571 11707 5.106712 GGTTGTCGACATATGTGTTGTGAAT 60.107 40.000 20.80 0.00 40.13 2.57
3572 11708 6.091577 GGTTGTCGACATATGTGTTGTGAATA 59.908 38.462 20.80 0.00 40.13 1.75
3575 11711 7.905126 TGTCGACATATGTGTTGTGAATATTC 58.095 34.615 15.76 8.60 40.13 1.75
3576 11712 7.547370 TGTCGACATATGTGTTGTGAATATTCA 59.453 33.333 15.76 14.23 40.13 2.57
3577 11713 8.551205 GTCGACATATGTGTTGTGAATATTCAT 58.449 33.333 20.65 6.11 40.13 2.57
3626 11762 9.771915 ATGTTTAAATTTGAGTTTTGCAAGTTG 57.228 25.926 0.00 0.00 0.00 3.16
3627 11763 8.233190 TGTTTAAATTTGAGTTTTGCAAGTTGG 58.767 29.630 4.75 0.00 0.00 3.77
3629 11765 9.436957 TTTAAATTTGAGTTTTGCAAGTTGGTA 57.563 25.926 4.75 0.00 0.00 3.25
3630 11766 9.606631 TTAAATTTGAGTTTTGCAAGTTGGTAT 57.393 25.926 4.75 0.00 0.00 2.73
3631 11767 7.713764 AATTTGAGTTTTGCAAGTTGGTATC 57.286 32.000 4.75 0.00 0.00 2.24
3632 11768 5.843673 TTGAGTTTTGCAAGTTGGTATCA 57.156 34.783 4.75 0.00 0.00 2.15
3633 11769 6.403866 TTGAGTTTTGCAAGTTGGTATCAT 57.596 33.333 4.75 0.00 0.00 2.45
3636 11772 4.588528 AGTTTTGCAAGTTGGTATCATGGT 59.411 37.500 4.75 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.678970 GCCATTCCCCGTCAAAGCT 60.679 57.895 0.00 0.00 0.00 3.74
12 13 0.178975 ACAAGCCATTCCCCGTCAAA 60.179 50.000 0.00 0.00 0.00 2.69
13 14 0.608035 GACAAGCCATTCCCCGTCAA 60.608 55.000 0.00 0.00 0.00 3.18
14 15 1.002624 GACAAGCCATTCCCCGTCA 60.003 57.895 0.00 0.00 0.00 4.35
17 18 1.815421 CTCGACAAGCCATTCCCCG 60.815 63.158 0.00 0.00 0.00 5.73
19 20 1.672881 CAATCTCGACAAGCCATTCCC 59.327 52.381 0.00 0.00 0.00 3.97
20 21 1.672881 CCAATCTCGACAAGCCATTCC 59.327 52.381 0.00 0.00 0.00 3.01
21 22 1.064654 GCCAATCTCGACAAGCCATTC 59.935 52.381 0.00 0.00 0.00 2.67
22 23 1.098050 GCCAATCTCGACAAGCCATT 58.902 50.000 0.00 0.00 0.00 3.16
23 24 0.035152 TGCCAATCTCGACAAGCCAT 60.035 50.000 0.00 0.00 0.00 4.40
25 26 0.955428 TGTGCCAATCTCGACAAGCC 60.955 55.000 0.00 0.00 0.00 4.35
26 27 0.166814 GTGTGCCAATCTCGACAAGC 59.833 55.000 0.00 0.00 0.00 4.01
27 28 0.439985 CGTGTGCCAATCTCGACAAG 59.560 55.000 0.00 0.00 0.00 3.16
28 29 0.948623 CCGTGTGCCAATCTCGACAA 60.949 55.000 0.00 0.00 0.00 3.18
29 30 1.374125 CCGTGTGCCAATCTCGACA 60.374 57.895 0.00 0.00 0.00 4.35
30 31 2.100631 CCCGTGTGCCAATCTCGAC 61.101 63.158 0.00 0.00 0.00 4.20
32 33 3.499737 GCCCGTGTGCCAATCTCG 61.500 66.667 0.00 0.00 0.00 4.04
34 35 0.899717 AAATGCCCGTGTGCCAATCT 60.900 50.000 0.00 0.00 0.00 2.40
35 36 0.737019 CAAATGCCCGTGTGCCAATC 60.737 55.000 0.00 0.00 0.00 2.67
36 37 1.292860 CAAATGCCCGTGTGCCAAT 59.707 52.632 0.00 0.00 0.00 3.16
37 38 2.733301 CAAATGCCCGTGTGCCAA 59.267 55.556 0.00 0.00 0.00 4.52
38 39 3.301554 CCAAATGCCCGTGTGCCA 61.302 61.111 0.00 0.00 0.00 4.92
39 40 3.302344 ACCAAATGCCCGTGTGCC 61.302 61.111 0.00 0.00 0.00 5.01
40 41 2.049248 CACCAAATGCCCGTGTGC 60.049 61.111 0.00 0.00 0.00 4.57
43 44 4.418401 CGCCACCAAATGCCCGTG 62.418 66.667 0.00 0.00 0.00 4.94
47 48 1.728490 GATCTCCGCCACCAAATGCC 61.728 60.000 0.00 0.00 0.00 4.40
48 49 1.729881 GATCTCCGCCACCAAATGC 59.270 57.895 0.00 0.00 0.00 3.56
49 50 1.439353 CCGATCTCCGCCACCAAATG 61.439 60.000 0.00 0.00 36.84 2.32
55 56 1.814169 GAAACCCGATCTCCGCCAC 60.814 63.158 0.00 0.00 36.84 5.01
56 57 1.550130 AAGAAACCCGATCTCCGCCA 61.550 55.000 0.00 0.00 36.84 5.69
58 59 2.135933 CATAAGAAACCCGATCTCCGC 58.864 52.381 0.00 0.00 36.84 5.54
59 60 2.364324 TCCATAAGAAACCCGATCTCCG 59.636 50.000 0.00 0.00 38.18 4.63
60 61 4.101119 TCTTCCATAAGAAACCCGATCTCC 59.899 45.833 0.00 0.00 38.81 3.71
62 63 5.455326 CCATCTTCCATAAGAAACCCGATCT 60.455 44.000 0.00 0.00 44.75 2.75
63 64 4.757149 CCATCTTCCATAAGAAACCCGATC 59.243 45.833 0.00 0.00 44.75 3.69
67 68 5.104318 ACTCTCCATCTTCCATAAGAAACCC 60.104 44.000 0.00 0.00 44.75 4.11
68 69 5.995446 ACTCTCCATCTTCCATAAGAAACC 58.005 41.667 0.00 0.00 44.75 3.27
69 70 7.929941 AAACTCTCCATCTTCCATAAGAAAC 57.070 36.000 0.00 0.00 44.75 2.78
71 72 9.838339 GAATAAACTCTCCATCTTCCATAAGAA 57.162 33.333 0.00 0.00 44.75 2.52
72 73 8.432805 GGAATAAACTCTCCATCTTCCATAAGA 58.567 37.037 0.00 0.00 45.63 2.10
75 76 6.851836 AGGGAATAAACTCTCCATCTTCCATA 59.148 38.462 0.00 0.00 33.85 2.74
78 79 5.638530 AGGGAATAAACTCTCCATCTTCC 57.361 43.478 0.00 0.00 32.95 3.46
80 81 6.642733 TCAAGGGAATAAACTCTCCATCTT 57.357 37.500 0.00 0.00 32.95 2.40
81 82 6.642733 TTCAAGGGAATAAACTCTCCATCT 57.357 37.500 0.00 0.00 32.95 2.90
82 83 7.703058 TTTTCAAGGGAATAAACTCTCCATC 57.297 36.000 0.00 0.00 32.95 3.51
83 84 8.670521 AATTTTCAAGGGAATAAACTCTCCAT 57.329 30.769 0.00 0.00 32.95 3.41
84 85 9.594936 TTAATTTTCAAGGGAATAAACTCTCCA 57.405 29.630 0.00 0.00 32.95 3.86
87 88 9.908152 CGTTTAATTTTCAAGGGAATAAACTCT 57.092 29.630 0.00 0.00 35.65 3.24
88 89 9.687210 ACGTTTAATTTTCAAGGGAATAAACTC 57.313 29.630 0.00 0.00 35.65 3.01
90 91 9.465985 TCACGTTTAATTTTCAAGGGAATAAAC 57.534 29.630 0.00 0.00 35.07 2.01
92 93 7.810759 GCTCACGTTTAATTTTCAAGGGAATAA 59.189 33.333 0.00 0.00 31.93 1.40
93 94 7.040340 TGCTCACGTTTAATTTTCAAGGGAATA 60.040 33.333 0.00 0.00 31.93 1.75
94 95 6.156519 GCTCACGTTTAATTTTCAAGGGAAT 58.843 36.000 0.00 0.00 31.93 3.01
96 97 4.580995 TGCTCACGTTTAATTTTCAAGGGA 59.419 37.500 0.00 0.00 0.00 4.20
97 98 4.865776 TGCTCACGTTTAATTTTCAAGGG 58.134 39.130 0.00 0.00 0.00 3.95
98 99 6.820470 TTTGCTCACGTTTAATTTTCAAGG 57.180 33.333 0.00 0.00 0.00 3.61
99 100 9.993881 CTATTTTGCTCACGTTTAATTTTCAAG 57.006 29.630 0.00 0.00 0.00 3.02
100 101 8.973378 CCTATTTTGCTCACGTTTAATTTTCAA 58.027 29.630 0.00 0.00 0.00 2.69
101 102 7.596995 CCCTATTTTGCTCACGTTTAATTTTCA 59.403 33.333 0.00 0.00 0.00 2.69
102 103 7.597369 ACCCTATTTTGCTCACGTTTAATTTTC 59.403 33.333 0.00 0.00 0.00 2.29
103 104 7.383843 CACCCTATTTTGCTCACGTTTAATTTT 59.616 33.333 0.00 0.00 0.00 1.82
104 105 6.866248 CACCCTATTTTGCTCACGTTTAATTT 59.134 34.615 0.00 0.00 0.00 1.82
105 106 6.207810 TCACCCTATTTTGCTCACGTTTAATT 59.792 34.615 0.00 0.00 0.00 1.40
107 108 5.049267 GTCACCCTATTTTGCTCACGTTTAA 60.049 40.000 0.00 0.00 0.00 1.52
109 110 3.252458 GTCACCCTATTTTGCTCACGTTT 59.748 43.478 0.00 0.00 0.00 3.60
110 111 2.812011 GTCACCCTATTTTGCTCACGTT 59.188 45.455 0.00 0.00 0.00 3.99
111 112 2.224426 TGTCACCCTATTTTGCTCACGT 60.224 45.455 0.00 0.00 0.00 4.49
113 114 3.674997 TCTGTCACCCTATTTTGCTCAC 58.325 45.455 0.00 0.00 0.00 3.51
114 115 4.517285 GATCTGTCACCCTATTTTGCTCA 58.483 43.478 0.00 0.00 0.00 4.26
115 116 3.557595 CGATCTGTCACCCTATTTTGCTC 59.442 47.826 0.00 0.00 0.00 4.26
117 118 2.614057 CCGATCTGTCACCCTATTTTGC 59.386 50.000 0.00 0.00 0.00 3.68
118 119 3.873910 ACCGATCTGTCACCCTATTTTG 58.126 45.455 0.00 0.00 0.00 2.44
119 120 4.261801 CAACCGATCTGTCACCCTATTTT 58.738 43.478 0.00 0.00 0.00 1.82
120 121 3.370527 CCAACCGATCTGTCACCCTATTT 60.371 47.826 0.00 0.00 0.00 1.40
121 122 2.170607 CCAACCGATCTGTCACCCTATT 59.829 50.000 0.00 0.00 0.00 1.73
124 125 1.983224 CCAACCGATCTGTCACCCT 59.017 57.895 0.00 0.00 0.00 4.34
125 126 1.745489 GCCAACCGATCTGTCACCC 60.745 63.158 0.00 0.00 0.00 4.61
126 127 2.100631 CGCCAACCGATCTGTCACC 61.101 63.158 0.00 0.00 40.02 4.02
127 128 1.352156 GACGCCAACCGATCTGTCAC 61.352 60.000 0.00 0.00 41.02 3.67
130 131 1.588824 TACGACGCCAACCGATCTGT 61.589 55.000 0.00 0.00 41.02 3.41
131 132 0.248907 ATACGACGCCAACCGATCTG 60.249 55.000 0.00 0.00 41.02 2.90
132 133 1.266175 CTATACGACGCCAACCGATCT 59.734 52.381 0.00 0.00 41.02 2.75
135 136 0.378257 GACTATACGACGCCAACCGA 59.622 55.000 0.00 0.00 41.02 4.69
137 138 0.099436 ACGACTATACGACGCCAACC 59.901 55.000 0.00 0.00 34.15 3.77
147 148 2.222911 GGTGCTCTCCGTACGACTATAC 59.777 54.545 18.76 8.25 0.00 1.47
148 149 2.158914 TGGTGCTCTCCGTACGACTATA 60.159 50.000 18.76 0.00 0.00 1.31
149 150 1.307097 GGTGCTCTCCGTACGACTAT 58.693 55.000 18.76 0.00 0.00 2.12
150 151 0.036105 TGGTGCTCTCCGTACGACTA 60.036 55.000 18.76 0.04 0.00 2.59
153 154 1.303074 AGTGGTGCTCTCCGTACGA 60.303 57.895 18.76 1.79 0.00 3.43
154 155 1.154016 CAGTGGTGCTCTCCGTACG 60.154 63.158 8.69 8.69 0.00 3.67
155 156 4.891566 CAGTGGTGCTCTCCGTAC 57.108 61.111 0.00 0.00 0.00 3.67
173 174 5.661458 CCCTCTATATTTGTAGCCATACGG 58.339 45.833 0.00 0.00 34.39 4.02
175 176 5.429130 GGCCCTCTATATTTGTAGCCATAC 58.571 45.833 0.00 0.00 39.01 2.39
177 178 3.055094 CGGCCCTCTATATTTGTAGCCAT 60.055 47.826 0.00 0.00 39.13 4.40
181 182 2.301870 TGGCGGCCCTCTATATTTGTAG 59.698 50.000 17.97 0.00 0.00 2.74
182 183 2.331166 TGGCGGCCCTCTATATTTGTA 58.669 47.619 17.97 0.00 0.00 2.41
183 184 1.136828 TGGCGGCCCTCTATATTTGT 58.863 50.000 17.97 0.00 0.00 2.83
184 185 2.086869 CATGGCGGCCCTCTATATTTG 58.913 52.381 17.97 0.00 0.00 2.32
185 186 1.705186 ACATGGCGGCCCTCTATATTT 59.295 47.619 17.97 0.00 0.00 1.40
186 187 1.362224 ACATGGCGGCCCTCTATATT 58.638 50.000 17.97 0.00 0.00 1.28
187 188 2.247699 TACATGGCGGCCCTCTATAT 57.752 50.000 17.97 0.00 0.00 0.86
188 189 2.236146 CAATACATGGCGGCCCTCTATA 59.764 50.000 17.97 2.33 0.00 1.31
189 190 1.003580 CAATACATGGCGGCCCTCTAT 59.996 52.381 17.97 1.07 0.00 1.98
190 191 0.396435 CAATACATGGCGGCCCTCTA 59.604 55.000 17.97 0.00 0.00 2.43
193 194 1.149174 CTCAATACATGGCGGCCCT 59.851 57.895 17.97 3.08 0.00 5.19
194 195 1.898574 CCTCAATACATGGCGGCCC 60.899 63.158 17.97 0.00 0.00 5.80
196 197 1.609208 ATTCCTCAATACATGGCGGC 58.391 50.000 0.00 0.00 0.00 6.53
197 198 3.885297 AGAAATTCCTCAATACATGGCGG 59.115 43.478 0.00 0.00 0.00 6.13
198 199 4.790766 GCAGAAATTCCTCAATACATGGCG 60.791 45.833 0.00 0.00 0.00 5.69
199 200 4.500375 GGCAGAAATTCCTCAATACATGGC 60.500 45.833 0.00 0.00 0.00 4.40
200 201 4.891756 AGGCAGAAATTCCTCAATACATGG 59.108 41.667 0.00 0.00 0.00 3.66
201 202 6.069684 GAGGCAGAAATTCCTCAATACATG 57.930 41.667 6.13 0.00 46.24 3.21
210 211 2.093764 CAGTCGAGAGGCAGAAATTCCT 60.094 50.000 0.00 0.00 38.99 3.36
211 212 2.275318 CAGTCGAGAGGCAGAAATTCC 58.725 52.381 0.00 0.00 38.99 3.01
212 213 2.966050 ACAGTCGAGAGGCAGAAATTC 58.034 47.619 0.00 0.00 38.99 2.17
213 214 4.537135 TTACAGTCGAGAGGCAGAAATT 57.463 40.909 0.00 0.00 38.99 1.82
216 217 3.764434 AGAATTACAGTCGAGAGGCAGAA 59.236 43.478 0.00 0.00 38.99 3.02
217 218 3.129462 CAGAATTACAGTCGAGAGGCAGA 59.871 47.826 0.00 0.00 38.99 4.26
219 220 2.826128 ACAGAATTACAGTCGAGAGGCA 59.174 45.455 0.00 0.00 38.99 4.75
220 221 3.512033 ACAGAATTACAGTCGAGAGGC 57.488 47.619 0.00 0.00 0.00 4.70
221 222 7.376336 CGTTATAACAGAATTACAGTCGAGAGG 59.624 40.741 15.67 0.00 0.00 3.69
222 223 7.376336 CCGTTATAACAGAATTACAGTCGAGAG 59.624 40.741 15.67 0.00 0.00 3.20
223 224 7.066163 TCCGTTATAACAGAATTACAGTCGAGA 59.934 37.037 15.67 0.00 0.00 4.04
225 226 7.087409 TCCGTTATAACAGAATTACAGTCGA 57.913 36.000 15.67 0.00 0.00 4.20
243 244 7.569957 GCGAGTGAAAAGAGTTTTATTCCGTTA 60.570 37.037 0.00 0.00 31.94 3.18
247 248 5.997385 TGCGAGTGAAAAGAGTTTTATTCC 58.003 37.500 0.00 0.00 31.94 3.01
248 249 7.908193 TTTGCGAGTGAAAAGAGTTTTATTC 57.092 32.000 0.00 0.00 31.94 1.75
286 287 7.609532 TCAGGTCCAAAAACAATGTCAATTTTT 59.390 29.630 0.00 0.00 36.26 1.94
288 289 6.538381 GTCAGGTCCAAAAACAATGTCAATTT 59.462 34.615 0.00 0.00 0.00 1.82
289 290 6.048509 GTCAGGTCCAAAAACAATGTCAATT 58.951 36.000 0.00 0.00 0.00 2.32
325 326 2.485835 CCGACTGTTTACCCCTTTGTGA 60.486 50.000 0.00 0.00 0.00 3.58
329 330 1.491754 ACACCGACTGTTTACCCCTTT 59.508 47.619 0.00 0.00 0.00 3.11
330 331 1.134228 ACACCGACTGTTTACCCCTT 58.866 50.000 0.00 0.00 0.00 3.95
331 332 2.014010 TACACCGACTGTTTACCCCT 57.986 50.000 0.00 0.00 33.91 4.79
332 333 2.837532 TTACACCGACTGTTTACCCC 57.162 50.000 0.00 0.00 33.91 4.95
448 456 3.507786 GACCGGGCATTGTTTTTCATAC 58.492 45.455 0.00 0.00 0.00 2.39
517 525 2.896443 GCGTCTCTTCCAGGAGGG 59.104 66.667 0.00 0.00 34.39 4.30
569 580 0.466124 TCGTCCACACATCAACACCA 59.534 50.000 0.00 0.00 0.00 4.17
573 584 1.156736 CCCTTCGTCCACACATCAAC 58.843 55.000 0.00 0.00 0.00 3.18
576 626 2.100631 CGCCCTTCGTCCACACATC 61.101 63.158 0.00 0.00 0.00 3.06
588 638 2.490217 CGATCGTGTCTCGCCCTT 59.510 61.111 7.03 0.00 39.67 3.95
616 666 0.449388 CTTGCTTTCAGGTGATCGGC 59.551 55.000 0.00 0.00 0.00 5.54
682 743 2.930826 ACGTCACAGTTTGGAGGATT 57.069 45.000 0.00 0.00 0.00 3.01
683 744 2.930826 AACGTCACAGTTTGGAGGAT 57.069 45.000 0.00 0.00 0.00 3.24
684 745 2.702592 AAACGTCACAGTTTGGAGGA 57.297 45.000 0.00 0.00 42.12 3.71
718 779 1.361668 GCATCTGGACGCGTCAACAT 61.362 55.000 37.26 19.84 0.00 2.71
847 908 5.598416 ACTCGATTGAATGGTATGAGTGA 57.402 39.130 0.00 0.00 34.21 3.41
850 911 5.051441 CGTTCACTCGATTGAATGGTATGAG 60.051 44.000 23.18 6.41 38.40 2.90
851 912 4.803613 CGTTCACTCGATTGAATGGTATGA 59.196 41.667 23.18 0.00 38.40 2.15
864 986 1.611977 ACCAAGTCATCGTTCACTCGA 59.388 47.619 0.00 0.00 43.86 4.04
869 991 0.677288 ACGGACCAAGTCATCGTTCA 59.323 50.000 0.00 0.00 33.68 3.18
927 1053 0.441533 CGACTGACTGCACAATGCTC 59.558 55.000 2.02 0.00 45.31 4.26
929 1055 0.164647 GTCGACTGACTGCACAATGC 59.835 55.000 8.70 0.00 42.08 3.56
933 1062 0.109735 GATCGTCGACTGACTGCACA 60.110 55.000 14.70 0.00 43.21 4.57
956 1085 2.042831 GGCACTGTGGATGTGGAGC 61.043 63.158 10.21 0.00 36.08 4.70
1018 4125 4.092091 CACAAGAGCCAAGACGAGATAAAC 59.908 45.833 0.00 0.00 0.00 2.01
1038 4145 1.001760 GAGTAGGAGGGGGAGCACA 59.998 63.158 0.00 0.00 0.00 4.57
1064 4171 2.393768 CCGCTGCGCTTTCTGATGT 61.394 57.895 18.00 0.00 0.00 3.06
1545 4655 1.437573 GGTCATGTCCGCGATGAGA 59.562 57.895 8.23 0.00 30.39 3.27
1629 4739 1.014804 ACCCAGAGAGGATCCTGACT 58.985 55.000 22.02 14.96 41.22 3.41
1842 5440 0.114364 TCTGTACCCTGAGGAGCACA 59.886 55.000 0.00 0.00 36.73 4.57
1855 5453 1.449778 GGCCGCCTTCCTTCTGTAC 60.450 63.158 0.71 0.00 0.00 2.90
1878 5476 0.251386 TTCCCATGGTAAAAGGCGCA 60.251 50.000 10.83 0.00 0.00 6.09
1880 5478 0.455815 GCTTCCCATGGTAAAAGGCG 59.544 55.000 11.73 0.00 0.00 5.52
1898 5496 6.018669 GCTTACCACTAATAGACACTTGATGC 60.019 42.308 0.00 0.00 0.00 3.91
1931 5529 9.995003 AGTGAATGAAAACAAAATAATTAGCCA 57.005 25.926 0.00 0.00 0.00 4.75
1993 5695 7.518188 AGAAGAGAAGGTCATTTAACTTCCAA 58.482 34.615 0.00 0.00 41.06 3.53
2017 5719 5.163814 GCACTAAACAAGTCCTGCAGAATAG 60.164 44.000 17.39 7.70 35.76 1.73
2031 5733 1.669760 CGCTCCCGGCACTAAACAA 60.670 57.895 0.00 0.00 41.91 2.83
2126 5828 2.794103 TGTAGGTGGCTACGTACTTCA 58.206 47.619 26.50 10.15 44.45 3.02
2137 5839 1.378646 GCCTTCCCTTGTAGGTGGC 60.379 63.158 0.00 0.00 39.20 5.01
2154 5856 2.442188 CGTCCTCGGTTACGCTTGC 61.442 63.158 0.00 0.00 40.69 4.01
2197 5899 0.534412 CGTCTCCTTGATGACCAGCT 59.466 55.000 0.00 0.00 33.63 4.24
2273 5975 2.785868 GTCGTAGCCGAGGACCTTA 58.214 57.895 0.00 0.00 45.26 2.69
2408 6110 5.221682 TGTGTACTCGAAATTGGTTCCCTTA 60.222 40.000 0.00 0.00 31.99 2.69
2420 6122 1.600164 CCGAACGGTGTGTACTCGAAA 60.600 52.381 4.99 0.00 0.00 3.46
2546 6248 1.079490 TCCTCCTCCATGTCCAACTCT 59.921 52.381 0.00 0.00 0.00 3.24
2658 10600 0.676184 TCTAGTCGATGGCATCCAGC 59.324 55.000 21.20 11.42 44.65 4.85
2659 10601 3.324117 CAATCTAGTCGATGGCATCCAG 58.676 50.000 21.20 12.92 36.75 3.86
2667 10609 4.393371 TCGATCTAGCCAATCTAGTCGATG 59.607 45.833 15.54 0.00 43.89 3.84
2677 10619 4.384056 CTGGAATGTTCGATCTAGCCAAT 58.616 43.478 0.00 0.00 0.00 3.16
2721 10664 2.559698 TACCACCATGACACACTTGG 57.440 50.000 0.00 0.00 45.63 3.61
2873 10938 7.444183 CACACAAGGAGTAGAGTTTGGAAAATA 59.556 37.037 0.00 0.00 0.00 1.40
2883 10948 3.574826 GGAGTTCACACAAGGAGTAGAGT 59.425 47.826 0.00 0.00 0.00 3.24
2884 10949 3.056465 GGGAGTTCACACAAGGAGTAGAG 60.056 52.174 0.00 0.00 0.00 2.43
2909 10974 1.153127 AACGTGGCCGAAAGACCAA 60.153 52.632 0.00 0.00 37.79 3.67
2935 11001 3.994931 AACCACCAATACCCTCACTAC 57.005 47.619 0.00 0.00 0.00 2.73
3050 11116 6.169557 ACACCAAGTACACATTCTTAGTCA 57.830 37.500 0.00 0.00 0.00 3.41
3069 11135 0.731855 GTAGACGTCTTGGCGACACC 60.732 60.000 25.44 0.00 42.98 4.16
3075 11141 2.161211 AGTACTTCGTAGACGTCTTGGC 59.839 50.000 25.44 13.26 38.67 4.52
3093 11159 4.293494 AGAAGATCCCATGCTGAAGAGTA 58.707 43.478 0.00 0.00 0.00 2.59
3125 11192 0.867746 CGCTGCTTGTTGACTTAGCA 59.132 50.000 0.00 9.82 42.22 3.49
3146 11282 0.404040 TCTCCGAAAGCCCAAACCAT 59.596 50.000 0.00 0.00 0.00 3.55
3149 11285 2.115343 AGATCTCCGAAAGCCCAAAC 57.885 50.000 0.00 0.00 0.00 2.93
3155 11291 8.801913 CAATTGAAAAATTAGATCTCCGAAAGC 58.198 33.333 0.00 0.00 0.00 3.51
3218 11354 7.860649 ACCTATATATTGGGTACGGAAAAGA 57.139 36.000 16.25 0.00 0.00 2.52
3236 11372 1.417517 TCCCTGTCGAGCGTACCTATA 59.582 52.381 0.00 0.00 0.00 1.31
3245 11381 4.024556 CACATGATATTTTCCCTGTCGAGC 60.025 45.833 0.00 0.00 0.00 5.03
3253 11389 6.147821 CGACTGGTATCACATGATATTTTCCC 59.852 42.308 0.00 2.49 39.03 3.97
3254 11390 6.706270 ACGACTGGTATCACATGATATTTTCC 59.294 38.462 0.00 2.82 39.03 3.13
3255 11391 7.715265 ACGACTGGTATCACATGATATTTTC 57.285 36.000 0.00 0.55 39.03 2.29
3256 11392 9.261180 CTAACGACTGGTATCACATGATATTTT 57.739 33.333 0.00 0.00 39.03 1.82
3257 11393 8.638873 TCTAACGACTGGTATCACATGATATTT 58.361 33.333 0.00 0.00 39.03 1.40
3260 11396 7.447238 TCATCTAACGACTGGTATCACATGATA 59.553 37.037 0.00 0.00 36.05 2.15
3261 11397 6.265422 TCATCTAACGACTGGTATCACATGAT 59.735 38.462 0.00 0.00 38.51 2.45
3262 11398 5.592688 TCATCTAACGACTGGTATCACATGA 59.407 40.000 0.00 0.00 0.00 3.07
3263 11399 5.831997 TCATCTAACGACTGGTATCACATG 58.168 41.667 0.00 0.00 0.00 3.21
3266 11402 6.016527 TGGTATCATCTAACGACTGGTATCAC 60.017 42.308 0.00 0.00 0.00 3.06
3267 11403 6.066032 TGGTATCATCTAACGACTGGTATCA 58.934 40.000 0.00 0.00 0.00 2.15
3268 11404 6.570672 TGGTATCATCTAACGACTGGTATC 57.429 41.667 0.00 0.00 0.00 2.24
3270 11406 6.066032 TCATGGTATCATCTAACGACTGGTA 58.934 40.000 0.00 0.00 0.00 3.25
3272 11408 5.453567 TCATGGTATCATCTAACGACTGG 57.546 43.478 0.00 0.00 0.00 4.00
3273 11409 7.030165 GGTATCATGGTATCATCTAACGACTG 58.970 42.308 0.00 0.00 0.00 3.51
3274 11410 6.719829 TGGTATCATGGTATCATCTAACGACT 59.280 38.462 0.00 0.00 0.00 4.18
3275 11411 6.920817 TGGTATCATGGTATCATCTAACGAC 58.079 40.000 0.00 0.00 0.00 4.34
3276 11412 7.232737 AGTTGGTATCATGGTATCATCTAACGA 59.767 37.037 7.89 0.00 0.00 3.85
3278 11414 8.993121 CAAGTTGGTATCATGGTATCATCTAAC 58.007 37.037 9.73 1.16 0.00 2.34
3280 11416 7.161404 GCAAGTTGGTATCATGGTATCATCTA 58.839 38.462 9.73 0.00 0.00 1.98
3281 11417 6.000219 GCAAGTTGGTATCATGGTATCATCT 59.000 40.000 0.00 1.74 0.00 2.90
3282 11418 5.764686 TGCAAGTTGGTATCATGGTATCATC 59.235 40.000 0.00 0.00 0.00 2.92
3283 11419 5.693961 TGCAAGTTGGTATCATGGTATCAT 58.306 37.500 0.00 0.00 0.00 2.45
3285 11421 6.449635 TTTGCAAGTTGGTATCATGGTATC 57.550 37.500 4.75 0.00 0.00 2.24
3287 11423 5.772672 AGTTTTGCAAGTTGGTATCATGGTA 59.227 36.000 4.75 0.00 0.00 3.25
3289 11425 5.138125 AGTTTTGCAAGTTGGTATCATGG 57.862 39.130 4.75 0.00 0.00 3.66
3290 11426 5.771469 TGAGTTTTGCAAGTTGGTATCATG 58.229 37.500 4.75 0.00 0.00 3.07
3293 11429 7.713764 AATTTGAGTTTTGCAAGTTGGTATC 57.286 32.000 4.75 0.00 0.00 2.24
3294 11430 9.606631 TTAAATTTGAGTTTTGCAAGTTGGTAT 57.393 25.926 4.75 0.00 0.00 2.73
3295 11431 9.436957 TTTAAATTTGAGTTTTGCAAGTTGGTA 57.563 25.926 4.75 0.00 0.00 3.25
3296 11432 7.913674 TTAAATTTGAGTTTTGCAAGTTGGT 57.086 28.000 4.75 0.00 0.00 3.67
3297 11433 8.663911 TCTTTAAATTTGAGTTTTGCAAGTTGG 58.336 29.630 4.75 0.00 0.00 3.77
3301 11437 9.853921 GACATCTTTAAATTTGAGTTTTGCAAG 57.146 29.630 0.00 0.00 0.00 4.01
3302 11438 9.376075 TGACATCTTTAAATTTGAGTTTTGCAA 57.624 25.926 0.00 0.00 0.00 4.08
3303 11439 8.939201 TGACATCTTTAAATTTGAGTTTTGCA 57.061 26.923 0.00 0.00 0.00 4.08
3344 11480 9.358406 ACATATGTATTGTGAACATCCATGATT 57.642 29.630 6.56 0.00 38.49 2.57
3345 11481 8.929260 ACATATGTATTGTGAACATCCATGAT 57.071 30.769 6.56 0.00 38.49 2.45
3346 11482 7.992033 TGACATATGTATTGTGAACATCCATGA 59.008 33.333 8.71 0.00 38.49 3.07
3347 11483 8.156994 TGACATATGTATTGTGAACATCCATG 57.843 34.615 8.71 0.00 38.49 3.66
3348 11484 8.623903 GTTGACATATGTATTGTGAACATCCAT 58.376 33.333 8.71 0.00 39.84 3.41
3349 11485 7.609532 TGTTGACATATGTATTGTGAACATCCA 59.390 33.333 8.71 0.00 43.20 3.41
3350 11486 7.984391 TGTTGACATATGTATTGTGAACATCC 58.016 34.615 8.71 0.00 43.20 3.51
3351 11487 9.277565 GTTGTTGACATATGTATTGTGAACATC 57.722 33.333 8.71 5.82 45.87 3.06
3352 11488 8.243426 GGTTGTTGACATATGTATTGTGAACAT 58.757 33.333 8.71 0.00 45.87 2.71
3353 11489 7.308891 GGGTTGTTGACATATGTATTGTGAACA 60.309 37.037 8.71 1.18 45.26 3.18
3354 11490 7.027161 GGGTTGTTGACATATGTATTGTGAAC 58.973 38.462 8.71 7.25 40.29 3.18
3355 11491 6.151985 GGGGTTGTTGACATATGTATTGTGAA 59.848 38.462 8.71 0.00 0.00 3.18
3356 11492 5.650266 GGGGTTGTTGACATATGTATTGTGA 59.350 40.000 8.71 0.00 0.00 3.58
3357 11493 5.652014 AGGGGTTGTTGACATATGTATTGTG 59.348 40.000 8.71 0.00 0.00 3.33
3358 11494 5.826643 AGGGGTTGTTGACATATGTATTGT 58.173 37.500 8.71 0.00 0.00 2.71
3359 11495 7.873719 TTAGGGGTTGTTGACATATGTATTG 57.126 36.000 8.71 0.00 0.00 1.90
3360 11496 8.887264 TTTTAGGGGTTGTTGACATATGTATT 57.113 30.769 8.71 0.00 0.00 1.89
3361 11497 8.887264 TTTTTAGGGGTTGTTGACATATGTAT 57.113 30.769 8.71 0.00 0.00 2.29
3388 11524 9.270640 CCTCTCTATTTCGAATTTTGATCTGAT 57.729 33.333 0.00 0.00 0.00 2.90
3389 11525 7.712639 CCCTCTCTATTTCGAATTTTGATCTGA 59.287 37.037 0.00 0.00 0.00 3.27
3390 11526 7.712639 TCCCTCTCTATTTCGAATTTTGATCTG 59.287 37.037 0.00 0.00 0.00 2.90
3391 11527 7.796054 TCCCTCTCTATTTCGAATTTTGATCT 58.204 34.615 0.00 0.00 0.00 2.75
3392 11528 7.928706 TCTCCCTCTCTATTTCGAATTTTGATC 59.071 37.037 0.00 0.00 0.00 2.92
3393 11529 7.796054 TCTCCCTCTCTATTTCGAATTTTGAT 58.204 34.615 0.00 0.00 0.00 2.57
3394 11530 7.182817 TCTCCCTCTCTATTTCGAATTTTGA 57.817 36.000 0.00 0.00 0.00 2.69
3395 11531 7.849804 TTCTCCCTCTCTATTTCGAATTTTG 57.150 36.000 0.00 0.00 0.00 2.44
3396 11532 8.322091 TCTTTCTCCCTCTCTATTTCGAATTTT 58.678 33.333 0.00 0.00 0.00 1.82
3397 11533 7.852263 TCTTTCTCCCTCTCTATTTCGAATTT 58.148 34.615 0.00 0.00 0.00 1.82
3398 11534 7.425224 TCTTTCTCCCTCTCTATTTCGAATT 57.575 36.000 0.00 0.00 0.00 2.17
3399 11535 7.425224 TTCTTTCTCCCTCTCTATTTCGAAT 57.575 36.000 0.00 0.00 0.00 3.34
3400 11536 6.852420 TTCTTTCTCCCTCTCTATTTCGAA 57.148 37.500 0.00 0.00 0.00 3.71
3401 11537 6.852420 TTTCTTTCTCCCTCTCTATTTCGA 57.148 37.500 0.00 0.00 0.00 3.71
3402 11538 7.907214 TTTTTCTTTCTCCCTCTCTATTTCG 57.093 36.000 0.00 0.00 0.00 3.46
3423 11559 9.865321 CACTATTCATGATGGATTTGTCTTTTT 57.135 29.630 0.00 0.00 0.00 1.94
3424 11560 9.028284 ACACTATTCATGATGGATTTGTCTTTT 57.972 29.630 0.00 0.00 0.00 2.27
3425 11561 8.585471 ACACTATTCATGATGGATTTGTCTTT 57.415 30.769 0.00 0.00 0.00 2.52
3426 11562 7.830697 TGACACTATTCATGATGGATTTGTCTT 59.169 33.333 20.28 1.99 32.63 3.01
3427 11563 7.341030 TGACACTATTCATGATGGATTTGTCT 58.659 34.615 20.28 0.57 32.63 3.41
3428 11564 7.558161 TGACACTATTCATGATGGATTTGTC 57.442 36.000 15.95 15.95 0.00 3.18
3429 11565 7.943079 TTGACACTATTCATGATGGATTTGT 57.057 32.000 0.00 0.00 0.00 2.83
3430 11566 9.297586 CTTTTGACACTATTCATGATGGATTTG 57.702 33.333 0.00 0.00 0.00 2.32
3431 11567 9.246670 TCTTTTGACACTATTCATGATGGATTT 57.753 29.630 0.00 0.00 0.00 2.17
3432 11568 8.812513 TCTTTTGACACTATTCATGATGGATT 57.187 30.769 0.00 0.00 0.00 3.01
3433 11569 8.812513 TTCTTTTGACACTATTCATGATGGAT 57.187 30.769 0.00 0.00 0.00 3.41
3434 11570 8.102676 TCTTCTTTTGACACTATTCATGATGGA 58.897 33.333 0.00 0.00 0.00 3.41
3435 11571 8.180267 GTCTTCTTTTGACACTATTCATGATGG 58.820 37.037 0.00 0.00 34.80 3.51
3436 11572 8.724229 TGTCTTCTTTTGACACTATTCATGATG 58.276 33.333 0.00 0.00 39.23 3.07
3437 11573 8.853077 TGTCTTCTTTTGACACTATTCATGAT 57.147 30.769 0.00 0.00 39.23 2.45
3438 11574 8.675705 TTGTCTTCTTTTGACACTATTCATGA 57.324 30.769 0.00 0.00 43.13 3.07
3439 11575 9.734620 TTTTGTCTTCTTTTGACACTATTCATG 57.265 29.630 0.00 0.00 43.13 3.07
3440 11576 9.956720 CTTTTGTCTTCTTTTGACACTATTCAT 57.043 29.630 0.00 0.00 43.13 2.57
3441 11577 7.915397 GCTTTTGTCTTCTTTTGACACTATTCA 59.085 33.333 0.00 0.00 43.13 2.57
3442 11578 8.131731 AGCTTTTGTCTTCTTTTGACACTATTC 58.868 33.333 0.00 0.00 43.13 1.75
3443 11579 8.000780 AGCTTTTGTCTTCTTTTGACACTATT 57.999 30.769 0.00 0.00 43.13 1.73
3444 11580 7.573968 AGCTTTTGTCTTCTTTTGACACTAT 57.426 32.000 0.00 0.00 43.13 2.12
3445 11581 7.985184 TCTAGCTTTTGTCTTCTTTTGACACTA 59.015 33.333 0.00 0.00 43.13 2.74
3446 11582 5.904362 AGCTTTTGTCTTCTTTTGACACT 57.096 34.783 0.00 0.00 43.13 3.55
3447 11583 7.016361 TCTAGCTTTTGTCTTCTTTTGACAC 57.984 36.000 0.00 0.00 43.13 3.67
3448 11584 7.624360 TTCTAGCTTTTGTCTTCTTTTGACA 57.376 32.000 0.00 0.00 41.94 3.58
3449 11585 7.114106 GCATTCTAGCTTTTGTCTTCTTTTGAC 59.886 37.037 0.00 0.00 35.21 3.18
3450 11586 7.141363 GCATTCTAGCTTTTGTCTTCTTTTGA 58.859 34.615 0.00 0.00 0.00 2.69
3451 11587 6.364435 GGCATTCTAGCTTTTGTCTTCTTTTG 59.636 38.462 0.00 0.00 34.17 2.44
3454 11590 5.048434 GTGGCATTCTAGCTTTTGTCTTCTT 60.048 40.000 0.00 0.00 34.17 2.52
3459 11595 6.094048 TGAATAGTGGCATTCTAGCTTTTGTC 59.906 38.462 0.00 0.00 36.16 3.18
3461 11597 6.127925 TGTGAATAGTGGCATTCTAGCTTTTG 60.128 38.462 0.00 0.00 36.16 2.44
3466 11602 6.875726 TCATATGTGAATAGTGGCATTCTAGC 59.124 38.462 1.90 0.00 36.16 3.42
3500 11636 9.796120 ATTCGAAATACACAAGAGAAACAAAAA 57.204 25.926 0.00 0.00 0.00 1.94
3502 11638 9.796120 AAATTCGAAATACACAAGAGAAACAAA 57.204 25.926 0.00 0.00 0.00 2.83
3504 11640 9.232082 CAAAATTCGAAATACACAAGAGAAACA 57.768 29.630 0.00 0.00 0.00 2.83
3505 11641 9.445786 TCAAAATTCGAAATACACAAGAGAAAC 57.554 29.630 0.00 0.00 0.00 2.78
3508 11644 9.219603 AGATCAAAATTCGAAATACACAAGAGA 57.780 29.630 0.00 0.00 0.00 3.10
3509 11645 9.270576 CAGATCAAAATTCGAAATACACAAGAG 57.729 33.333 0.00 0.00 0.00 2.85
3510 11646 8.998377 TCAGATCAAAATTCGAAATACACAAGA 58.002 29.630 0.00 0.00 0.00 3.02
3511 11647 9.611284 TTCAGATCAAAATTCGAAATACACAAG 57.389 29.630 0.00 0.00 0.00 3.16
3539 11675 6.487331 ACACATATGTCGACAACCCTTAAAAA 59.513 34.615 24.13 0.00 31.55 1.94
3540 11676 5.998981 ACACATATGTCGACAACCCTTAAAA 59.001 36.000 24.13 0.00 31.55 1.52
3541 11677 5.553123 ACACATATGTCGACAACCCTTAAA 58.447 37.500 24.13 0.00 31.55 1.52
3542 11678 5.155278 ACACATATGTCGACAACCCTTAA 57.845 39.130 24.13 2.71 31.55 1.85
3543 11679 4.811969 ACACATATGTCGACAACCCTTA 57.188 40.909 24.13 10.40 31.55 2.69
3545 11681 3.244422 ACAACACATATGTCGACAACCCT 60.244 43.478 24.13 8.61 38.45 4.34
3548 11684 4.983215 TCACAACACATATGTCGACAAC 57.017 40.909 24.13 0.00 38.45 3.32
3549 11685 7.841915 ATATTCACAACACATATGTCGACAA 57.158 32.000 24.13 12.36 38.45 3.18
3550 11686 7.547370 TGAATATTCACAACACATATGTCGACA 59.453 33.333 22.48 22.48 32.60 4.35
3551 11687 7.905126 TGAATATTCACAACACATATGTCGAC 58.095 34.615 14.23 9.11 32.60 4.20
3552 11688 8.661352 ATGAATATTCACAACACATATGTCGA 57.339 30.769 20.19 0.00 40.49 4.20
3601 11737 8.233190 CCAACTTGCAAAACTCAAATTTAAACA 58.767 29.630 0.00 0.00 0.00 2.83
3602 11738 8.233868 ACCAACTTGCAAAACTCAAATTTAAAC 58.766 29.630 0.00 0.00 0.00 2.01
3606 11742 7.768120 TGATACCAACTTGCAAAACTCAAATTT 59.232 29.630 0.00 0.00 0.00 1.82
3607 11743 7.271511 TGATACCAACTTGCAAAACTCAAATT 58.728 30.769 0.00 0.00 0.00 1.82
3608 11744 6.815089 TGATACCAACTTGCAAAACTCAAAT 58.185 32.000 0.00 0.00 0.00 2.32
3609 11745 6.214191 TGATACCAACTTGCAAAACTCAAA 57.786 33.333 0.00 0.00 0.00 2.69
3610 11746 5.843673 TGATACCAACTTGCAAAACTCAA 57.156 34.783 0.00 0.00 0.00 3.02
3613 11749 4.588528 ACCATGATACCAACTTGCAAAACT 59.411 37.500 0.00 0.00 0.00 2.66
3614 11750 4.881920 ACCATGATACCAACTTGCAAAAC 58.118 39.130 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.