Multiple sequence alignment - TraesCS2A01G077900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G077900 chr2A 100.000 2760 0 0 1 2760 35528618 35525859 0.000000e+00 5097.0
1 TraesCS2A01G077900 chr2A 87.420 1097 103 10 716 1796 35589513 35588436 0.000000e+00 1229.0
2 TraesCS2A01G077900 chr2A 91.477 352 23 3 2121 2466 530353225 530352875 6.920000e-131 477.0
3 TraesCS2A01G077900 chr2A 91.618 346 23 2 2128 2467 401204612 401204957 8.950000e-130 473.0
4 TraesCS2A01G077900 chr2A 90.556 360 24 6 2118 2469 690666130 690665773 4.160000e-128 468.0
5 TraesCS2A01G077900 chr2A 91.589 107 4 1 1982 2088 35586379 35586278 2.870000e-30 143.0
6 TraesCS2A01G077900 chr2A 96.078 51 2 0 1779 1829 35588418 35588368 1.760000e-12 84.2
7 TraesCS2A01G077900 chr2D 96.009 2130 67 12 8 2127 32504581 32502460 0.000000e+00 3446.0
8 TraesCS2A01G077900 chr2D 93.919 296 15 1 2465 2760 32502465 32502173 7.010000e-121 444.0
9 TraesCS2A01G077900 chr2B 94.864 1402 42 10 740 2127 53512229 53510844 0.000000e+00 2163.0
10 TraesCS2A01G077900 chr2B 85.848 1286 133 24 716 1969 53525114 53523846 0.000000e+00 1321.0
11 TraesCS2A01G077900 chr2B 83.838 297 26 9 2465 2760 53523222 53522947 2.110000e-66 263.0
12 TraesCS2A01G077900 chr2B 92.308 156 11 1 2465 2619 53510849 53510694 1.290000e-53 220.0
13 TraesCS2A01G077900 chr2B 91.429 140 8 3 2622 2760 53504281 53504145 3.630000e-44 189.0
14 TraesCS2A01G077900 chr2B 85.621 153 11 7 1981 2127 53523364 53523217 1.710000e-32 150.0
15 TraesCS2A01G077900 chr2B 94.444 36 1 1 129 164 235902957 235902991 1.000000e-03 54.7
16 TraesCS2A01G077900 chr7D 93.429 350 16 3 2128 2471 319903681 319904029 1.900000e-141 512.0
17 TraesCS2A01G077900 chr3D 92.754 345 20 1 2127 2466 329488052 329487708 6.870000e-136 494.0
18 TraesCS2A01G077900 chr4A 92.151 344 21 2 2128 2465 744006164 744006507 5.350000e-132 481.0
19 TraesCS2A01G077900 chr6D 91.525 354 21 5 2123 2469 210751978 210751627 1.920000e-131 479.0
20 TraesCS2A01G077900 chr1B 91.477 352 24 2 2124 2470 229262494 229262844 1.920000e-131 479.0
21 TraesCS2A01G077900 chr1A 91.011 356 25 3 2124 2473 479829873 479830227 8.950000e-130 473.0
22 TraesCS2A01G077900 chr5D 85.577 104 12 3 584 685 68232994 68233096 3.760000e-19 106.0
23 TraesCS2A01G077900 chr5B 94.737 38 2 0 640 677 301544503 301544466 2.970000e-05 60.2
24 TraesCS2A01G077900 chr6A 92.500 40 2 1 633 672 83250790 83250752 3.840000e-04 56.5
25 TraesCS2A01G077900 chr3B 100.000 28 0 0 654 681 76391921 76391948 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G077900 chr2A 35525859 35528618 2759 True 5097.0 5097 100.000000 1 2760 1 chr2A.!!$R1 2759
1 TraesCS2A01G077900 chr2A 35586278 35589513 3235 True 485.4 1229 91.695667 716 2088 3 chr2A.!!$R4 1372
2 TraesCS2A01G077900 chr2D 32502173 32504581 2408 True 1945.0 3446 94.964000 8 2760 2 chr2D.!!$R1 2752
3 TraesCS2A01G077900 chr2B 53510694 53512229 1535 True 1191.5 2163 93.586000 740 2619 2 chr2B.!!$R2 1879
4 TraesCS2A01G077900 chr2B 53522947 53525114 2167 True 578.0 1321 85.102333 716 2760 3 chr2B.!!$R3 2044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 286 0.171007 CAAGGTGCCAATTACAGCGG 59.829 55.0 4.7 0.0 40.41 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 4499 0.037605 CACGTGAGAGGGGGTGTTAC 60.038 60.0 10.9 0.0 0.0 2.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 81 4.051922 GAGCTGTATACTGATTGGGTTCG 58.948 47.826 13.44 0.00 0.00 3.95
158 161 5.800296 TCCGATCCAAAATAAGTGTCTTGA 58.200 37.500 0.00 0.00 0.00 3.02
281 286 0.171007 CAAGGTGCCAATTACAGCGG 59.829 55.000 4.70 0.00 40.41 5.52
293 298 4.796495 CAGCGGCACCTAACCCCC 62.796 72.222 1.45 0.00 0.00 5.40
474 480 6.371809 TGTTTGTAGAAAAACTAGCCAGTG 57.628 37.500 0.00 0.00 40.11 3.66
601 607 1.255667 GCAAGTACTCCCTCCGTCCA 61.256 60.000 0.00 0.00 0.00 4.02
646 652 5.752955 AGGTCAAATTTGAAATGAAACCACG 59.247 36.000 22.07 0.00 39.21 4.94
659 665 7.650834 AATGAAACCACGACAATAATTTTGG 57.349 32.000 0.00 0.00 0.00 3.28
665 671 4.083217 CCACGACAATAATTTTGGAACGGA 60.083 41.667 0.00 0.00 0.00 4.69
693 699 8.504005 TGAGTAATTAAGTTAACTGCTCTTTGC 58.496 33.333 18.65 3.48 43.25 3.68
698 704 7.795482 TTAAGTTAACTGCTCTTTGCTTACA 57.205 32.000 9.34 0.00 43.37 2.41
721 727 1.589993 CGAAGCGCGATCCAGATGT 60.590 57.895 12.10 0.00 44.57 3.06
746 752 5.276868 CGTCCTAAGCTTACATATGTTGCAC 60.277 44.000 25.18 16.88 0.00 4.57
757 763 4.584325 ACATATGTTGCACTGAACAAAGGT 59.416 37.500 1.41 0.00 39.25 3.50
887 893 4.497300 TGTGGTATAGTCAACTAAACGCC 58.503 43.478 0.00 0.00 31.39 5.68
1608 1632 3.959991 GAGCGGAGGTGGTCAAGGC 62.960 68.421 0.00 0.00 39.88 4.35
1622 1646 1.923395 AAGGCGGTGGATCTGGGAA 60.923 57.895 0.00 0.00 0.00 3.97
1642 1666 2.337532 GTGACGCACACCCGTAGT 59.662 61.111 5.30 0.00 42.24 2.73
1643 1667 1.300388 GTGACGCACACCCGTAGTT 60.300 57.895 5.30 0.00 42.24 2.24
1644 1668 0.877213 GTGACGCACACCCGTAGTTT 60.877 55.000 5.30 0.00 42.24 2.66
1688 1713 2.706339 AGATGGTTTGCAGCCTCTAG 57.294 50.000 10.19 0.00 0.00 2.43
1697 1722 1.416030 TGCAGCCTCTAGTGTTTCACA 59.584 47.619 2.80 0.00 36.74 3.58
1713 1738 0.786581 CACATCGGCATCATCGCTAC 59.213 55.000 0.00 0.00 0.00 3.58
1733 1761 9.485206 TCGCTACTTATTCCCTTTTATTATGTC 57.515 33.333 0.00 0.00 0.00 3.06
1833 1896 9.321532 TGGGACTATGCATTATATGTTACTACT 57.678 33.333 3.54 0.00 0.00 2.57
2135 4436 7.197017 ACAGTGAGAGTAATATCTGTTAAGCG 58.803 38.462 0.00 0.00 33.26 4.68
2136 4437 7.148052 ACAGTGAGAGTAATATCTGTTAAGCGT 60.148 37.037 0.00 0.00 33.26 5.07
2137 4438 7.377397 CAGTGAGAGTAATATCTGTTAAGCGTC 59.623 40.741 0.00 0.00 0.00 5.19
2138 4439 7.067129 AGTGAGAGTAATATCTGTTAAGCGTCA 59.933 37.037 0.00 0.00 0.00 4.35
2139 4440 7.863375 GTGAGAGTAATATCTGTTAAGCGTCAT 59.137 37.037 0.00 0.00 0.00 3.06
2140 4441 7.862873 TGAGAGTAATATCTGTTAAGCGTCATG 59.137 37.037 0.00 0.00 0.00 3.07
2141 4442 6.642950 AGAGTAATATCTGTTAAGCGTCATGC 59.357 38.462 0.00 0.00 46.98 4.06
2150 4451 3.889227 GCGTCATGCACTAGCCAA 58.111 55.556 0.00 0.00 45.45 4.52
2151 4452 1.425428 GCGTCATGCACTAGCCAAC 59.575 57.895 0.00 0.00 45.45 3.77
2152 4453 1.982073 GCGTCATGCACTAGCCAACC 61.982 60.000 0.00 0.00 45.45 3.77
2153 4454 0.673333 CGTCATGCACTAGCCAACCA 60.673 55.000 0.00 0.00 41.13 3.67
2154 4455 1.533625 GTCATGCACTAGCCAACCAA 58.466 50.000 0.00 0.00 41.13 3.67
2155 4456 1.885887 GTCATGCACTAGCCAACCAAA 59.114 47.619 0.00 0.00 41.13 3.28
2156 4457 2.295909 GTCATGCACTAGCCAACCAAAA 59.704 45.455 0.00 0.00 41.13 2.44
2157 4458 2.557924 TCATGCACTAGCCAACCAAAAG 59.442 45.455 0.00 0.00 41.13 2.27
2158 4459 2.065899 TGCACTAGCCAACCAAAAGT 57.934 45.000 0.00 0.00 41.13 2.66
2159 4460 1.953686 TGCACTAGCCAACCAAAAGTC 59.046 47.619 0.00 0.00 41.13 3.01
2160 4461 2.230660 GCACTAGCCAACCAAAAGTCT 58.769 47.619 0.00 0.00 33.58 3.24
2161 4462 2.030805 GCACTAGCCAACCAAAAGTCTG 60.031 50.000 0.00 0.00 33.58 3.51
2162 4463 3.476552 CACTAGCCAACCAAAAGTCTGA 58.523 45.455 0.00 0.00 0.00 3.27
2163 4464 3.882888 CACTAGCCAACCAAAAGTCTGAA 59.117 43.478 0.00 0.00 0.00 3.02
2164 4465 3.883489 ACTAGCCAACCAAAAGTCTGAAC 59.117 43.478 0.00 0.00 0.00 3.18
2165 4466 3.018423 AGCCAACCAAAAGTCTGAACT 57.982 42.857 0.00 0.00 37.32 3.01
2167 4468 4.532834 AGCCAACCAAAAGTCTGAACTTA 58.467 39.130 0.00 0.00 45.07 2.24
2168 4469 5.140454 AGCCAACCAAAAGTCTGAACTTAT 58.860 37.500 0.00 0.00 45.07 1.73
2169 4470 5.010012 AGCCAACCAAAAGTCTGAACTTATG 59.990 40.000 0.00 0.00 45.07 1.90
2170 4471 5.009610 GCCAACCAAAAGTCTGAACTTATGA 59.990 40.000 0.00 0.00 45.07 2.15
2171 4472 6.460953 GCCAACCAAAAGTCTGAACTTATGAA 60.461 38.462 0.00 0.00 45.07 2.57
2172 4473 7.488322 CCAACCAAAAGTCTGAACTTATGAAA 58.512 34.615 0.00 0.00 45.07 2.69
2173 4474 7.978975 CCAACCAAAAGTCTGAACTTATGAAAA 59.021 33.333 0.00 0.00 45.07 2.29
2174 4475 9.023967 CAACCAAAAGTCTGAACTTATGAAAAG 57.976 33.333 0.00 0.00 45.07 2.27
2175 4476 8.519799 ACCAAAAGTCTGAACTTATGAAAAGA 57.480 30.769 0.00 0.00 45.07 2.52
2176 4477 8.624776 ACCAAAAGTCTGAACTTATGAAAAGAG 58.375 33.333 0.00 0.00 45.07 2.85
2177 4478 7.592903 CCAAAAGTCTGAACTTATGAAAAGAGC 59.407 37.037 0.00 0.00 45.07 4.09
2178 4479 8.348507 CAAAAGTCTGAACTTATGAAAAGAGCT 58.651 33.333 0.00 0.00 45.07 4.09
2179 4480 9.561069 AAAAGTCTGAACTTATGAAAAGAGCTA 57.439 29.630 0.00 0.00 45.07 3.32
2180 4481 8.770438 AAGTCTGAACTTATGAAAAGAGCTAG 57.230 34.615 0.00 0.00 43.98 3.42
2181 4482 7.902087 AGTCTGAACTTATGAAAAGAGCTAGT 58.098 34.615 0.00 0.00 28.74 2.57
2182 4483 7.816995 AGTCTGAACTTATGAAAAGAGCTAGTG 59.183 37.037 0.00 0.00 28.74 2.74
2183 4484 6.591834 TCTGAACTTATGAAAAGAGCTAGTGC 59.408 38.462 0.00 0.00 40.05 4.40
2184 4485 6.230472 TGAACTTATGAAAAGAGCTAGTGCA 58.770 36.000 0.00 0.00 42.74 4.57
2185 4486 6.710295 TGAACTTATGAAAAGAGCTAGTGCAA 59.290 34.615 0.00 0.00 42.74 4.08
2186 4487 7.391554 TGAACTTATGAAAAGAGCTAGTGCAAT 59.608 33.333 0.00 0.00 42.74 3.56
2187 4488 7.313951 ACTTATGAAAAGAGCTAGTGCAATC 57.686 36.000 0.00 0.00 42.74 2.67
2188 4489 6.317391 ACTTATGAAAAGAGCTAGTGCAATCC 59.683 38.462 0.00 0.00 42.74 3.01
2189 4490 4.019792 TGAAAAGAGCTAGTGCAATCCA 57.980 40.909 0.00 0.00 42.74 3.41
2190 4491 3.753272 TGAAAAGAGCTAGTGCAATCCAC 59.247 43.478 0.00 0.00 45.01 4.02
2202 4503 5.338614 GTGCAATCCACATATACCGTAAC 57.661 43.478 0.00 0.00 44.06 2.50
2203 4504 4.812091 GTGCAATCCACATATACCGTAACA 59.188 41.667 0.00 0.00 44.06 2.41
2204 4505 4.812091 TGCAATCCACATATACCGTAACAC 59.188 41.667 0.00 0.00 0.00 3.32
2205 4506 4.212636 GCAATCCACATATACCGTAACACC 59.787 45.833 0.00 0.00 0.00 4.16
2206 4507 4.612264 ATCCACATATACCGTAACACCC 57.388 45.455 0.00 0.00 0.00 4.61
2207 4508 2.699846 TCCACATATACCGTAACACCCC 59.300 50.000 0.00 0.00 0.00 4.95
2208 4509 2.224354 CCACATATACCGTAACACCCCC 60.224 54.545 0.00 0.00 0.00 5.40
2209 4510 2.701951 CACATATACCGTAACACCCCCT 59.298 50.000 0.00 0.00 0.00 4.79
2210 4511 2.967887 ACATATACCGTAACACCCCCTC 59.032 50.000 0.00 0.00 0.00 4.30
2211 4512 3.236896 CATATACCGTAACACCCCCTCT 58.763 50.000 0.00 0.00 0.00 3.69
2212 4513 1.785647 ATACCGTAACACCCCCTCTC 58.214 55.000 0.00 0.00 0.00 3.20
2213 4514 0.409092 TACCGTAACACCCCCTCTCA 59.591 55.000 0.00 0.00 0.00 3.27
2214 4515 1.190178 ACCGTAACACCCCCTCTCAC 61.190 60.000 0.00 0.00 0.00 3.51
2215 4516 1.214589 CGTAACACCCCCTCTCACG 59.785 63.158 0.00 0.00 0.00 4.35
2216 4517 1.530013 CGTAACACCCCCTCTCACGT 61.530 60.000 0.00 0.00 0.00 4.49
2217 4518 0.037605 GTAACACCCCCTCTCACGTG 60.038 60.000 9.94 9.94 0.00 4.49
2218 4519 0.470456 TAACACCCCCTCTCACGTGT 60.470 55.000 16.51 0.00 41.07 4.49
2219 4520 2.040009 AACACCCCCTCTCACGTGTG 62.040 60.000 16.51 13.78 39.33 3.82
2220 4521 2.200370 ACCCCCTCTCACGTGTGA 59.800 61.111 18.43 18.43 38.06 3.58
2221 4522 2.207924 ACCCCCTCTCACGTGTGAC 61.208 63.158 16.51 0.00 35.46 3.67
2225 4526 2.258591 CTCTCACGTGTGACGGGG 59.741 66.667 16.51 2.86 46.67 5.73
2226 4527 2.203379 TCTCACGTGTGACGGGGA 60.203 61.111 16.51 0.00 46.67 4.81
2227 4528 1.802337 CTCTCACGTGTGACGGGGAA 61.802 60.000 16.51 0.00 46.67 3.97
2228 4529 1.372997 CTCACGTGTGACGGGGAAG 60.373 63.158 16.51 0.00 46.67 3.46
2229 4530 1.802337 CTCACGTGTGACGGGGAAGA 61.802 60.000 16.51 0.00 46.67 2.87
2230 4531 2.079020 TCACGTGTGACGGGGAAGAC 62.079 60.000 16.51 0.00 46.67 3.01
2231 4532 2.732016 CGTGTGACGGGGAAGACA 59.268 61.111 0.00 0.00 38.08 3.41
2232 4533 1.068417 CGTGTGACGGGGAAGACAA 59.932 57.895 0.00 0.00 38.08 3.18
2233 4534 0.944311 CGTGTGACGGGGAAGACAAG 60.944 60.000 0.00 0.00 38.08 3.16
2234 4535 0.106149 GTGTGACGGGGAAGACAAGT 59.894 55.000 0.00 0.00 0.00 3.16
2235 4536 0.391597 TGTGACGGGGAAGACAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2236 4537 0.391597 GTGACGGGGAAGACAAGTCA 59.608 55.000 2.72 0.00 39.21 3.41
2237 4538 1.124780 TGACGGGGAAGACAAGTCAA 58.875 50.000 2.72 0.00 38.66 3.18
2238 4539 1.202604 TGACGGGGAAGACAAGTCAAC 60.203 52.381 2.72 0.00 38.66 3.18
2239 4540 0.834612 ACGGGGAAGACAAGTCAACA 59.165 50.000 2.72 0.00 0.00 3.33
2240 4541 1.226746 CGGGGAAGACAAGTCAACAC 58.773 55.000 2.72 0.00 0.00 3.32
2241 4542 1.226746 GGGGAAGACAAGTCAACACG 58.773 55.000 2.72 0.00 0.00 4.49
2242 4543 1.474498 GGGGAAGACAAGTCAACACGT 60.474 52.381 2.72 0.00 0.00 4.49
2243 4544 1.597663 GGGAAGACAAGTCAACACGTG 59.402 52.381 15.48 15.48 37.95 4.49
2244 4545 1.003866 GGAAGACAAGTCAACACGTGC 60.004 52.381 17.22 0.00 35.56 5.34
2245 4546 1.663643 GAAGACAAGTCAACACGTGCA 59.336 47.619 17.22 0.00 35.56 4.57
2246 4547 1.732941 AGACAAGTCAACACGTGCAA 58.267 45.000 17.22 0.00 35.56 4.08
2247 4548 1.396996 AGACAAGTCAACACGTGCAAC 59.603 47.619 17.22 11.35 35.56 4.17
2248 4549 0.450184 ACAAGTCAACACGTGCAACC 59.550 50.000 17.22 1.27 35.56 3.77
2249 4550 0.449786 CAAGTCAACACGTGCAACCA 59.550 50.000 17.22 0.00 0.00 3.67
2250 4551 0.732571 AAGTCAACACGTGCAACCAG 59.267 50.000 17.22 0.00 0.00 4.00
2251 4552 0.107897 AGTCAACACGTGCAACCAGA 60.108 50.000 17.22 1.72 0.00 3.86
2252 4553 0.730265 GTCAACACGTGCAACCAGAA 59.270 50.000 17.22 0.00 0.00 3.02
2253 4554 1.013596 TCAACACGTGCAACCAGAAG 58.986 50.000 17.22 0.00 0.00 2.85
2254 4555 1.013596 CAACACGTGCAACCAGAAGA 58.986 50.000 17.22 0.00 0.00 2.87
2255 4556 1.003545 CAACACGTGCAACCAGAAGAG 60.004 52.381 17.22 0.00 0.00 2.85
2256 4557 0.464036 ACACGTGCAACCAGAAGAGA 59.536 50.000 17.22 0.00 0.00 3.10
2257 4558 1.143305 CACGTGCAACCAGAAGAGAG 58.857 55.000 0.82 0.00 0.00 3.20
2258 4559 0.601311 ACGTGCAACCAGAAGAGAGC 60.601 55.000 0.00 0.00 0.00 4.09
2259 4560 1.621301 CGTGCAACCAGAAGAGAGCG 61.621 60.000 0.00 0.00 0.00 5.03
2260 4561 0.319900 GTGCAACCAGAAGAGAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
2261 4562 0.319900 TGCAACCAGAAGAGAGCGAC 60.320 55.000 0.00 0.00 0.00 5.19
2262 4563 1.347817 GCAACCAGAAGAGAGCGACG 61.348 60.000 0.00 0.00 0.00 5.12
2263 4564 0.734253 CAACCAGAAGAGAGCGACGG 60.734 60.000 0.00 0.00 0.00 4.79
2264 4565 2.202676 CCAGAAGAGAGCGACGGC 60.203 66.667 0.00 0.00 40.37 5.68
2265 4566 2.578178 CAGAAGAGAGCGACGGCG 60.578 66.667 6.12 6.12 46.35 6.46
2278 4579 4.851114 CGGCGCGCGAAACTCATG 62.851 66.667 37.18 8.81 0.00 3.07
2279 4580 3.788766 GGCGCGCGAAACTCATGT 61.789 61.111 37.18 0.00 0.00 3.21
2280 4581 2.449525 GGCGCGCGAAACTCATGTA 61.450 57.895 37.18 0.00 0.00 2.29
2281 4582 1.636340 GCGCGCGAAACTCATGTAT 59.364 52.632 37.18 0.00 0.00 2.29
2282 4583 0.651610 GCGCGCGAAACTCATGTATG 60.652 55.000 37.18 0.00 0.00 2.39
2283 4584 0.920664 CGCGCGAAACTCATGTATGA 59.079 50.000 28.94 0.00 35.16 2.15
2284 4585 1.331161 CGCGCGAAACTCATGTATGAC 60.331 52.381 28.94 0.00 32.50 3.06
2285 4586 1.927174 GCGCGAAACTCATGTATGACT 59.073 47.619 12.10 0.00 32.50 3.41
2286 4587 2.034507 GCGCGAAACTCATGTATGACTC 60.035 50.000 12.10 0.00 32.50 3.36
2287 4588 3.179048 CGCGAAACTCATGTATGACTCA 58.821 45.455 0.00 0.00 32.50 3.41
2288 4589 3.612423 CGCGAAACTCATGTATGACTCAA 59.388 43.478 0.00 0.00 32.50 3.02
2289 4590 4.259570 CGCGAAACTCATGTATGACTCAAG 60.260 45.833 0.00 0.00 32.50 3.02
2290 4591 4.864806 GCGAAACTCATGTATGACTCAAGA 59.135 41.667 0.00 0.00 32.50 3.02
2291 4592 5.005203 GCGAAACTCATGTATGACTCAAGAG 59.995 44.000 0.00 0.00 36.90 2.85
2292 4593 5.518128 CGAAACTCATGTATGACTCAAGAGG 59.482 44.000 1.73 0.00 35.72 3.69
2293 4594 4.399004 ACTCATGTATGACTCAAGAGGC 57.601 45.455 1.73 0.00 35.72 4.70
2294 4595 3.133721 ACTCATGTATGACTCAAGAGGCC 59.866 47.826 0.00 0.00 35.72 5.19
2295 4596 3.378512 TCATGTATGACTCAAGAGGCCT 58.621 45.455 3.86 3.86 34.90 5.19
2296 4597 3.386078 TCATGTATGACTCAAGAGGCCTC 59.614 47.826 26.22 26.22 34.90 4.70
2297 4598 3.107402 TGTATGACTCAAGAGGCCTCT 57.893 47.619 30.40 30.40 42.75 3.69
2298 4599 4.251103 TGTATGACTCAAGAGGCCTCTA 57.749 45.455 35.31 20.03 39.39 2.43
2299 4600 3.954904 TGTATGACTCAAGAGGCCTCTAC 59.045 47.826 35.31 25.23 39.39 2.59
2300 4601 1.464734 TGACTCAAGAGGCCTCTACG 58.535 55.000 35.31 27.33 39.39 3.51
2301 4602 1.271982 TGACTCAAGAGGCCTCTACGT 60.272 52.381 35.31 28.54 39.39 3.57
2302 4603 1.133407 GACTCAAGAGGCCTCTACGTG 59.867 57.143 35.31 27.99 39.39 4.49
2303 4604 0.457851 CTCAAGAGGCCTCTACGTGG 59.542 60.000 35.31 20.86 39.39 4.94
2304 4605 0.039180 TCAAGAGGCCTCTACGTGGA 59.961 55.000 35.31 22.61 39.39 4.02
2305 4606 0.173708 CAAGAGGCCTCTACGTGGAC 59.826 60.000 35.31 4.76 39.39 4.02
2306 4607 0.251653 AAGAGGCCTCTACGTGGACA 60.252 55.000 35.31 0.00 39.39 4.02
2307 4608 0.966370 AGAGGCCTCTACGTGGACAC 60.966 60.000 34.40 1.97 38.35 3.67
2308 4609 1.228769 AGGCCTCTACGTGGACACA 60.229 57.895 0.00 0.00 34.31 3.72
2309 4610 0.830444 AGGCCTCTACGTGGACACAA 60.830 55.000 0.00 0.00 34.31 3.33
2310 4611 0.034337 GGCCTCTACGTGGACACAAA 59.966 55.000 0.00 0.00 31.53 2.83
2311 4612 1.338769 GGCCTCTACGTGGACACAAAT 60.339 52.381 0.00 0.00 31.53 2.32
2312 4613 1.732259 GCCTCTACGTGGACACAAATG 59.268 52.381 0.00 0.00 0.00 2.32
2313 4614 2.346803 CCTCTACGTGGACACAAATGG 58.653 52.381 0.00 0.00 0.00 3.16
2314 4615 2.346803 CTCTACGTGGACACAAATGGG 58.653 52.381 0.00 0.00 0.00 4.00
2315 4616 1.002659 TCTACGTGGACACAAATGGGG 59.997 52.381 0.00 0.00 0.00 4.96
2316 4617 0.037017 TACGTGGACACAAATGGGGG 59.963 55.000 0.00 0.00 0.00 5.40
2317 4618 2.635443 CGTGGACACAAATGGGGGC 61.635 63.158 3.12 0.00 0.00 5.80
2318 4619 1.228862 GTGGACACAAATGGGGGCT 60.229 57.895 0.00 0.00 0.00 5.19
2319 4620 0.039035 GTGGACACAAATGGGGGCTA 59.961 55.000 0.00 0.00 0.00 3.93
2320 4621 0.039035 TGGACACAAATGGGGGCTAC 59.961 55.000 0.00 0.00 0.00 3.58
2321 4622 0.683179 GGACACAAATGGGGGCTACC 60.683 60.000 0.00 0.00 39.11 3.18
2322 4623 0.039035 GACACAAATGGGGGCTACCA 59.961 55.000 4.05 4.05 46.24 3.25
2323 4624 0.039618 ACACAAATGGGGGCTACCAG 59.960 55.000 7.47 0.00 45.20 4.00
2324 4625 1.000359 ACAAATGGGGGCTACCAGC 60.000 57.895 7.47 0.00 45.20 4.85
2325 4626 1.000233 CAAATGGGGGCTACCAGCA 60.000 57.895 7.47 0.00 44.75 4.41
2326 4627 0.614415 CAAATGGGGGCTACCAGCAA 60.614 55.000 7.47 0.00 44.75 3.91
2327 4628 0.339510 AAATGGGGGCTACCAGCAAT 59.660 50.000 7.47 0.00 44.75 3.56
2328 4629 0.339510 AATGGGGGCTACCAGCAATT 59.660 50.000 7.47 0.00 44.75 2.32
2329 4630 0.339510 ATGGGGGCTACCAGCAATTT 59.660 50.000 7.47 0.00 44.75 1.82
2330 4631 0.116143 TGGGGGCTACCAGCAATTTT 59.884 50.000 0.00 0.00 44.75 1.82
2331 4632 1.275666 GGGGGCTACCAGCAATTTTT 58.724 50.000 0.00 0.00 44.75 1.94
2332 4633 2.225394 TGGGGGCTACCAGCAATTTTTA 60.225 45.455 0.00 0.00 44.75 1.52
2333 4634 2.835156 GGGGGCTACCAGCAATTTTTAA 59.165 45.455 0.00 0.00 44.75 1.52
2334 4635 3.454447 GGGGGCTACCAGCAATTTTTAAT 59.546 43.478 0.00 0.00 44.75 1.40
2335 4636 4.651962 GGGGGCTACCAGCAATTTTTAATA 59.348 41.667 0.00 0.00 44.75 0.98
2336 4637 5.129650 GGGGGCTACCAGCAATTTTTAATAA 59.870 40.000 0.00 0.00 44.75 1.40
2337 4638 6.352308 GGGGGCTACCAGCAATTTTTAATAAA 60.352 38.462 0.00 0.00 44.75 1.40
2338 4639 7.279615 GGGGCTACCAGCAATTTTTAATAAAT 58.720 34.615 0.00 0.00 44.75 1.40
2339 4640 7.773224 GGGGCTACCAGCAATTTTTAATAAATT 59.227 33.333 0.00 0.00 44.75 1.82
2340 4641 8.611757 GGGCTACCAGCAATTTTTAATAAATTG 58.388 33.333 20.10 20.10 44.75 2.32
2360 4661 1.884235 CGAAAGCCAGGACTTGAACT 58.116 50.000 0.00 0.00 0.00 3.01
2361 4662 1.801178 CGAAAGCCAGGACTTGAACTC 59.199 52.381 0.00 0.00 0.00 3.01
2362 4663 2.806745 CGAAAGCCAGGACTTGAACTCA 60.807 50.000 0.00 0.00 0.00 3.41
2363 4664 3.214328 GAAAGCCAGGACTTGAACTCAA 58.786 45.455 0.00 0.00 0.00 3.02
2376 4677 3.914312 TGAACTCAAGACCTTAGCTTCG 58.086 45.455 0.00 0.00 0.00 3.79
2377 4678 3.572682 TGAACTCAAGACCTTAGCTTCGA 59.427 43.478 0.00 0.00 0.00 3.71
2378 4679 4.220821 TGAACTCAAGACCTTAGCTTCGAT 59.779 41.667 0.00 0.00 0.00 3.59
2379 4680 5.417894 TGAACTCAAGACCTTAGCTTCGATA 59.582 40.000 0.00 0.00 0.00 2.92
2380 4681 5.251601 ACTCAAGACCTTAGCTTCGATAC 57.748 43.478 0.00 0.00 0.00 2.24
2381 4682 4.098196 ACTCAAGACCTTAGCTTCGATACC 59.902 45.833 0.00 0.00 0.00 2.73
2382 4683 4.021229 TCAAGACCTTAGCTTCGATACCA 58.979 43.478 0.00 0.00 0.00 3.25
2383 4684 4.649674 TCAAGACCTTAGCTTCGATACCAT 59.350 41.667 0.00 0.00 0.00 3.55
2384 4685 4.592485 AGACCTTAGCTTCGATACCATG 57.408 45.455 0.00 0.00 0.00 3.66
2385 4686 3.961408 AGACCTTAGCTTCGATACCATGT 59.039 43.478 0.00 0.00 0.00 3.21
2386 4687 4.406003 AGACCTTAGCTTCGATACCATGTT 59.594 41.667 0.00 0.00 0.00 2.71
2387 4688 5.597182 AGACCTTAGCTTCGATACCATGTTA 59.403 40.000 0.00 0.00 0.00 2.41
2388 4689 6.097839 AGACCTTAGCTTCGATACCATGTTAA 59.902 38.462 0.00 0.00 0.00 2.01
2389 4690 6.047231 ACCTTAGCTTCGATACCATGTTAAC 58.953 40.000 0.00 0.00 0.00 2.01
2390 4691 5.465724 CCTTAGCTTCGATACCATGTTAACC 59.534 44.000 2.48 0.00 0.00 2.85
2391 4692 4.755266 AGCTTCGATACCATGTTAACCT 57.245 40.909 2.48 0.00 0.00 3.50
2392 4693 5.099042 AGCTTCGATACCATGTTAACCTT 57.901 39.130 2.48 0.00 0.00 3.50
2393 4694 5.116882 AGCTTCGATACCATGTTAACCTTC 58.883 41.667 2.48 0.00 0.00 3.46
2394 4695 4.873827 GCTTCGATACCATGTTAACCTTCA 59.126 41.667 2.48 0.00 0.00 3.02
2395 4696 5.527582 GCTTCGATACCATGTTAACCTTCAT 59.472 40.000 2.48 0.00 0.00 2.57
2396 4697 6.511767 GCTTCGATACCATGTTAACCTTCATG 60.512 42.308 2.48 0.04 40.46 3.07
2397 4698 4.814234 TCGATACCATGTTAACCTTCATGC 59.186 41.667 2.48 0.00 39.74 4.06
2398 4699 4.574421 CGATACCATGTTAACCTTCATGCA 59.426 41.667 2.48 0.00 39.74 3.96
2399 4700 5.504010 CGATACCATGTTAACCTTCATGCAC 60.504 44.000 2.48 0.00 39.74 4.57
2400 4701 3.766545 ACCATGTTAACCTTCATGCACT 58.233 40.909 2.48 0.00 39.74 4.40
2401 4702 4.917385 ACCATGTTAACCTTCATGCACTA 58.083 39.130 2.48 0.00 39.74 2.74
2402 4703 4.943705 ACCATGTTAACCTTCATGCACTAG 59.056 41.667 2.48 0.00 39.74 2.57
2403 4704 4.201950 CCATGTTAACCTTCATGCACTAGC 60.202 45.833 2.48 0.00 39.74 3.42
2404 4705 3.343617 TGTTAACCTTCATGCACTAGCC 58.656 45.455 2.48 0.00 41.13 3.93
2405 4706 3.244735 TGTTAACCTTCATGCACTAGCCA 60.245 43.478 2.48 0.00 41.13 4.75
2406 4707 2.584835 AACCTTCATGCACTAGCCAA 57.415 45.000 0.00 0.00 41.13 4.52
2407 4708 1.826385 ACCTTCATGCACTAGCCAAC 58.174 50.000 0.00 0.00 41.13 3.77
2408 4709 0.729116 CCTTCATGCACTAGCCAACG 59.271 55.000 0.00 0.00 41.13 4.10
2409 4710 0.097674 CTTCATGCACTAGCCAACGC 59.902 55.000 0.00 0.00 41.13 4.84
2410 4711 0.605050 TTCATGCACTAGCCAACGCA 60.605 50.000 0.00 0.00 41.13 5.24
2411 4712 0.605050 TCATGCACTAGCCAACGCAA 60.605 50.000 0.00 0.00 41.13 4.85
2412 4713 0.454957 CATGCACTAGCCAACGCAAC 60.455 55.000 0.00 0.00 41.13 4.17
2413 4714 1.586154 ATGCACTAGCCAACGCAACC 61.586 55.000 0.00 0.00 41.13 3.77
2414 4715 2.258013 GCACTAGCCAACGCAACCA 61.258 57.895 0.00 0.00 37.52 3.67
2415 4716 1.791103 GCACTAGCCAACGCAACCAA 61.791 55.000 0.00 0.00 37.52 3.67
2416 4717 0.665835 CACTAGCCAACGCAACCAAA 59.334 50.000 0.00 0.00 37.52 3.28
2417 4718 1.066303 CACTAGCCAACGCAACCAAAA 59.934 47.619 0.00 0.00 37.52 2.44
2418 4719 1.751924 ACTAGCCAACGCAACCAAAAA 59.248 42.857 0.00 0.00 37.52 1.94
2419 4720 2.364002 ACTAGCCAACGCAACCAAAAAT 59.636 40.909 0.00 0.00 37.52 1.82
2420 4721 1.864565 AGCCAACGCAACCAAAAATC 58.135 45.000 0.00 0.00 37.52 2.17
2421 4722 0.865111 GCCAACGCAACCAAAAATCC 59.135 50.000 0.00 0.00 34.03 3.01
2422 4723 1.135867 CCAACGCAACCAAAAATCCG 58.864 50.000 0.00 0.00 0.00 4.18
2423 4724 1.269309 CCAACGCAACCAAAAATCCGA 60.269 47.619 0.00 0.00 0.00 4.55
2424 4725 2.464865 CAACGCAACCAAAAATCCGAA 58.535 42.857 0.00 0.00 0.00 4.30
2425 4726 2.128367 ACGCAACCAAAAATCCGAAC 57.872 45.000 0.00 0.00 0.00 3.95
2426 4727 1.679153 ACGCAACCAAAAATCCGAACT 59.321 42.857 0.00 0.00 0.00 3.01
2427 4728 2.100087 ACGCAACCAAAAATCCGAACTT 59.900 40.909 0.00 0.00 0.00 2.66
2428 4729 3.315749 ACGCAACCAAAAATCCGAACTTA 59.684 39.130 0.00 0.00 0.00 2.24
2429 4730 4.022676 ACGCAACCAAAAATCCGAACTTAT 60.023 37.500 0.00 0.00 0.00 1.73
2430 4731 4.323336 CGCAACCAAAAATCCGAACTTATG 59.677 41.667 0.00 0.00 0.00 1.90
2431 4732 4.625311 GCAACCAAAAATCCGAACTTATGG 59.375 41.667 0.00 0.00 0.00 2.74
2432 4733 5.565834 GCAACCAAAAATCCGAACTTATGGA 60.566 40.000 0.00 0.00 38.95 3.41
2433 4734 6.451393 CAACCAAAAATCCGAACTTATGGAA 58.549 36.000 0.00 0.00 37.90 3.53
2434 4735 6.658188 ACCAAAAATCCGAACTTATGGAAA 57.342 33.333 0.00 0.00 37.90 3.13
2435 4736 6.687604 ACCAAAAATCCGAACTTATGGAAAG 58.312 36.000 0.00 0.00 37.90 2.62
2436 4737 6.492087 ACCAAAAATCCGAACTTATGGAAAGA 59.508 34.615 0.00 0.00 37.90 2.52
2437 4738 7.029563 CCAAAAATCCGAACTTATGGAAAGAG 58.970 38.462 0.00 0.00 37.90 2.85
2438 4739 5.819825 AAATCCGAACTTATGGAAAGAGC 57.180 39.130 0.00 0.00 37.90 4.09
2439 4740 4.762289 ATCCGAACTTATGGAAAGAGCT 57.238 40.909 0.00 0.00 37.90 4.09
2440 4741 5.871396 ATCCGAACTTATGGAAAGAGCTA 57.129 39.130 0.00 0.00 37.90 3.32
2441 4742 5.263968 TCCGAACTTATGGAAAGAGCTAG 57.736 43.478 0.00 0.00 0.00 3.42
2442 4743 4.710375 TCCGAACTTATGGAAAGAGCTAGT 59.290 41.667 0.00 0.00 0.00 2.57
2443 4744 4.806247 CCGAACTTATGGAAAGAGCTAGTG 59.194 45.833 0.00 0.00 0.00 2.74
2444 4745 4.268884 CGAACTTATGGAAAGAGCTAGTGC 59.731 45.833 0.00 0.00 40.05 4.40
2445 4746 4.826274 ACTTATGGAAAGAGCTAGTGCA 57.174 40.909 0.00 0.00 42.74 4.57
2446 4747 5.165961 ACTTATGGAAAGAGCTAGTGCAA 57.834 39.130 0.00 0.00 42.74 4.08
2447 4748 5.749462 ACTTATGGAAAGAGCTAGTGCAAT 58.251 37.500 0.00 0.00 42.74 3.56
2448 4749 5.819901 ACTTATGGAAAGAGCTAGTGCAATC 59.180 40.000 0.00 0.00 42.74 2.67
2449 4750 2.991250 TGGAAAGAGCTAGTGCAATCC 58.009 47.619 0.00 0.00 42.74 3.01
2450 4751 2.305635 TGGAAAGAGCTAGTGCAATCCA 59.694 45.455 0.00 5.08 42.74 3.41
2451 4752 2.680339 GGAAAGAGCTAGTGCAATCCAC 59.320 50.000 0.00 0.00 45.01 4.02
2560 4862 8.077512 ACCCCCATTATACCATTTAAAATCCTT 58.922 33.333 0.00 0.00 0.00 3.36
2596 4898 8.335532 TCTCATAATTACTTGGAACTTTGTGG 57.664 34.615 0.00 0.00 0.00 4.17
2678 4981 5.643339 GTCAAATGACGTGGTAGATCATC 57.357 43.478 0.00 0.00 35.12 2.92
2689 4992 3.116590 TGGTAGATCATCTCAGGGTGGAT 60.117 47.826 0.00 0.00 0.00 3.41
2708 5012 4.407945 TGGATAACCTGTACTTAAGGGAGC 59.592 45.833 7.53 0.00 39.30 4.70
2725 5029 2.030981 GGAGCACGTAGTATAGGAGCAC 60.031 54.545 0.00 0.00 43.74 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.706952 TTTGTCCCTTCGCCTTGGGG 62.707 60.000 0.00 0.00 43.51 4.96
129 132 6.238648 ACACTTATTTTGGATCGGAAAGAGT 58.761 36.000 0.00 0.00 0.00 3.24
191 194 9.962809 AAACATAATTGAATTCATTGGGTTCAT 57.037 25.926 9.40 0.00 32.48 2.57
293 298 0.399949 TATGCACCTCCACCCCCTAG 60.400 60.000 0.00 0.00 0.00 3.02
414 419 9.197694 GATCAACTATAGTAGGCACACATTAAG 57.802 37.037 5.65 0.00 0.00 1.85
415 420 8.700973 TGATCAACTATAGTAGGCACACATTAA 58.299 33.333 5.65 0.00 0.00 1.40
458 464 4.816925 GTCAACTCACTGGCTAGTTTTTCT 59.183 41.667 0.00 0.00 33.72 2.52
474 480 6.434018 ACAAGTATAGTACGAGGTCAACTC 57.566 41.667 0.00 0.00 43.02 3.01
542 548 7.767659 TGATTTCTCTGACACCTGAGATTTATG 59.232 37.037 0.00 0.00 43.72 1.90
551 557 6.019237 CGTATTCATGATTTCTCTGACACCTG 60.019 42.308 0.00 0.00 0.00 4.00
623 629 5.751028 TCGTGGTTTCATTTCAAATTTGACC 59.249 36.000 20.35 16.31 36.83 4.02
624 630 6.254589 TGTCGTGGTTTCATTTCAAATTTGAC 59.745 34.615 20.35 7.77 36.83 3.18
646 652 6.072673 ACTCACTCCGTTCCAAAATTATTGTC 60.073 38.462 0.00 0.00 0.00 3.18
659 665 8.645487 CAGTTAACTTAATTACTCACTCCGTTC 58.355 37.037 5.07 0.00 0.00 3.95
665 671 9.780186 AAAGAGCAGTTAACTTAATTACTCACT 57.220 29.630 5.07 0.00 0.00 3.41
703 709 1.543941 GACATCTGGATCGCGCTTCG 61.544 60.000 5.56 0.00 40.15 3.79
721 727 5.047847 GCAACATATGTAAGCTTAGGACGA 58.952 41.667 20.17 0.00 0.00 4.20
746 752 3.316029 TCATGTGCTTCACCTTTGTTCAG 59.684 43.478 0.00 0.00 32.73 3.02
757 763 3.714391 CTCGATCATCTCATGTGCTTCA 58.286 45.455 0.00 0.00 0.00 3.02
887 893 0.107703 TGGCCGATGGAGCTTAAGTG 60.108 55.000 4.02 0.00 0.00 3.16
1371 1395 9.388506 GAATATCCACCGAAATCATAATGAGAT 57.611 33.333 0.00 0.00 0.00 2.75
1518 1542 7.922699 AGCATTTAGATAACTAGGTCCTCTT 57.077 36.000 0.00 0.00 0.00 2.85
1596 1620 3.953775 CCACCGCCTTGACCACCT 61.954 66.667 0.00 0.00 0.00 4.00
1608 1632 0.464373 CACCATTCCCAGATCCACCG 60.464 60.000 0.00 0.00 0.00 4.94
1697 1722 3.876274 ATAAGTAGCGATGATGCCGAT 57.124 42.857 0.00 0.00 34.65 4.18
1733 1761 4.099419 GGCCCCTTAATACATGAAACAAGG 59.901 45.833 0.00 6.81 33.76 3.61
2110 4410 7.148052 ACGCTTAACAGATATTACTCTCACTGT 60.148 37.037 0.00 0.00 39.70 3.55
2111 4411 7.197017 ACGCTTAACAGATATTACTCTCACTG 58.803 38.462 0.00 0.00 0.00 3.66
2127 4428 1.999735 GCTAGTGCATGACGCTTAACA 59.000 47.619 0.00 0.00 43.06 2.41
2128 4429 1.327764 GGCTAGTGCATGACGCTTAAC 59.672 52.381 0.00 0.00 43.06 2.01
2129 4430 1.066502 TGGCTAGTGCATGACGCTTAA 60.067 47.619 0.00 0.00 43.06 1.85
2130 4431 0.534873 TGGCTAGTGCATGACGCTTA 59.465 50.000 0.00 0.00 43.06 3.09
2131 4432 0.321564 TTGGCTAGTGCATGACGCTT 60.322 50.000 0.00 0.00 43.06 4.68
2132 4433 1.021390 GTTGGCTAGTGCATGACGCT 61.021 55.000 0.00 2.47 43.06 5.07
2133 4434 1.425428 GTTGGCTAGTGCATGACGC 59.575 57.895 0.00 0.00 41.91 5.19
2134 4435 0.673333 TGGTTGGCTAGTGCATGACG 60.673 55.000 0.00 0.00 41.91 4.35
2135 4436 1.533625 TTGGTTGGCTAGTGCATGAC 58.466 50.000 0.00 0.00 41.91 3.06
2136 4437 2.284754 TTTGGTTGGCTAGTGCATGA 57.715 45.000 0.00 0.00 41.91 3.07
2137 4438 2.297033 ACTTTTGGTTGGCTAGTGCATG 59.703 45.455 0.00 0.00 41.91 4.06
2138 4439 2.558359 GACTTTTGGTTGGCTAGTGCAT 59.442 45.455 0.00 0.00 41.91 3.96
2139 4440 1.953686 GACTTTTGGTTGGCTAGTGCA 59.046 47.619 0.00 0.00 41.91 4.57
2140 4441 2.030805 CAGACTTTTGGTTGGCTAGTGC 60.031 50.000 0.00 0.00 38.76 4.40
2141 4442 3.476552 TCAGACTTTTGGTTGGCTAGTG 58.523 45.455 0.00 0.00 0.00 2.74
2142 4443 3.857157 TCAGACTTTTGGTTGGCTAGT 57.143 42.857 0.00 0.00 0.00 2.57
2143 4444 4.137543 AGTTCAGACTTTTGGTTGGCTAG 58.862 43.478 0.00 0.00 29.87 3.42
2144 4445 4.164843 AGTTCAGACTTTTGGTTGGCTA 57.835 40.909 0.00 0.00 29.87 3.93
2145 4446 3.018423 AGTTCAGACTTTTGGTTGGCT 57.982 42.857 0.00 0.00 29.87 4.75
2146 4447 3.801114 AAGTTCAGACTTTTGGTTGGC 57.199 42.857 0.00 0.00 43.48 4.52
2147 4448 6.633500 TCATAAGTTCAGACTTTTGGTTGG 57.367 37.500 8.96 0.00 43.48 3.77
2148 4449 8.925161 TTTTCATAAGTTCAGACTTTTGGTTG 57.075 30.769 8.96 0.00 43.48 3.77
2149 4450 8.966868 TCTTTTCATAAGTTCAGACTTTTGGTT 58.033 29.630 8.96 0.00 43.48 3.67
2150 4451 8.519799 TCTTTTCATAAGTTCAGACTTTTGGT 57.480 30.769 8.96 0.00 43.48 3.67
2151 4452 7.592903 GCTCTTTTCATAAGTTCAGACTTTTGG 59.407 37.037 8.96 0.00 43.48 3.28
2152 4453 8.348507 AGCTCTTTTCATAAGTTCAGACTTTTG 58.651 33.333 0.00 0.90 43.48 2.44
2153 4454 8.457238 AGCTCTTTTCATAAGTTCAGACTTTT 57.543 30.769 0.00 0.00 43.48 2.27
2154 4455 9.213799 CTAGCTCTTTTCATAAGTTCAGACTTT 57.786 33.333 0.00 0.00 43.48 2.66
2156 4457 7.816995 CACTAGCTCTTTTCATAAGTTCAGACT 59.183 37.037 0.00 0.00 37.87 3.24
2157 4458 7.412455 GCACTAGCTCTTTTCATAAGTTCAGAC 60.412 40.741 0.00 0.00 37.91 3.51
2158 4459 6.591834 GCACTAGCTCTTTTCATAAGTTCAGA 59.408 38.462 0.00 0.00 37.91 3.27
2159 4460 6.369890 TGCACTAGCTCTTTTCATAAGTTCAG 59.630 38.462 0.00 0.00 42.74 3.02
2160 4461 6.230472 TGCACTAGCTCTTTTCATAAGTTCA 58.770 36.000 0.00 0.00 42.74 3.18
2161 4462 6.727824 TGCACTAGCTCTTTTCATAAGTTC 57.272 37.500 0.00 0.00 42.74 3.01
2162 4463 7.148171 GGATTGCACTAGCTCTTTTCATAAGTT 60.148 37.037 0.00 0.00 42.74 2.66
2163 4464 6.317391 GGATTGCACTAGCTCTTTTCATAAGT 59.683 38.462 0.00 0.00 42.74 2.24
2164 4465 6.317140 TGGATTGCACTAGCTCTTTTCATAAG 59.683 38.462 0.00 0.00 42.74 1.73
2165 4466 6.094048 GTGGATTGCACTAGCTCTTTTCATAA 59.906 38.462 0.45 0.00 42.74 1.90
2166 4467 5.586243 GTGGATTGCACTAGCTCTTTTCATA 59.414 40.000 0.45 0.00 42.74 2.15
2167 4468 4.397417 GTGGATTGCACTAGCTCTTTTCAT 59.603 41.667 0.45 0.00 42.74 2.57
2168 4469 3.753272 GTGGATTGCACTAGCTCTTTTCA 59.247 43.478 0.45 0.00 42.74 2.69
2169 4470 3.753272 TGTGGATTGCACTAGCTCTTTTC 59.247 43.478 9.80 0.00 42.74 2.29
2170 4471 3.754965 TGTGGATTGCACTAGCTCTTTT 58.245 40.909 9.80 0.00 42.74 2.27
2171 4472 3.423539 TGTGGATTGCACTAGCTCTTT 57.576 42.857 9.80 0.00 42.74 2.52
2172 4473 3.641434 ATGTGGATTGCACTAGCTCTT 57.359 42.857 9.80 0.00 42.74 2.85
2173 4474 4.970860 ATATGTGGATTGCACTAGCTCT 57.029 40.909 9.80 0.00 42.74 4.09
2174 4475 4.932200 GGTATATGTGGATTGCACTAGCTC 59.068 45.833 9.80 0.00 42.74 4.09
2175 4476 4.561530 CGGTATATGTGGATTGCACTAGCT 60.562 45.833 9.80 0.00 42.74 3.32
2176 4477 3.679980 CGGTATATGTGGATTGCACTAGC 59.320 47.826 9.80 3.10 42.57 3.42
2177 4478 4.883083 ACGGTATATGTGGATTGCACTAG 58.117 43.478 9.80 0.00 0.00 2.57
2178 4479 4.948341 ACGGTATATGTGGATTGCACTA 57.052 40.909 9.80 0.72 0.00 2.74
2179 4480 3.838244 ACGGTATATGTGGATTGCACT 57.162 42.857 9.80 0.00 0.00 4.40
2180 4481 4.812091 TGTTACGGTATATGTGGATTGCAC 59.188 41.667 0.72 0.72 0.00 4.57
2181 4482 4.812091 GTGTTACGGTATATGTGGATTGCA 59.188 41.667 0.00 0.00 0.00 4.08
2182 4483 4.212636 GGTGTTACGGTATATGTGGATTGC 59.787 45.833 0.00 0.00 0.00 3.56
2183 4484 4.753107 GGGTGTTACGGTATATGTGGATTG 59.247 45.833 0.00 0.00 0.00 2.67
2184 4485 4.202388 GGGGTGTTACGGTATATGTGGATT 60.202 45.833 0.00 0.00 0.00 3.01
2185 4486 3.325716 GGGGTGTTACGGTATATGTGGAT 59.674 47.826 0.00 0.00 0.00 3.41
2186 4487 2.699846 GGGGTGTTACGGTATATGTGGA 59.300 50.000 0.00 0.00 0.00 4.02
2187 4488 2.224354 GGGGGTGTTACGGTATATGTGG 60.224 54.545 0.00 0.00 0.00 4.17
2188 4489 2.701951 AGGGGGTGTTACGGTATATGTG 59.298 50.000 0.00 0.00 0.00 3.21
2189 4490 2.967887 GAGGGGGTGTTACGGTATATGT 59.032 50.000 0.00 0.00 0.00 2.29
2190 4491 3.236896 AGAGGGGGTGTTACGGTATATG 58.763 50.000 0.00 0.00 0.00 1.78
2191 4492 3.117016 TGAGAGGGGGTGTTACGGTATAT 60.117 47.826 0.00 0.00 0.00 0.86
2192 4493 2.244510 TGAGAGGGGGTGTTACGGTATA 59.755 50.000 0.00 0.00 0.00 1.47
2193 4494 1.007479 TGAGAGGGGGTGTTACGGTAT 59.993 52.381 0.00 0.00 0.00 2.73
2194 4495 0.409092 TGAGAGGGGGTGTTACGGTA 59.591 55.000 0.00 0.00 0.00 4.02
2195 4496 1.156803 TGAGAGGGGGTGTTACGGT 59.843 57.895 0.00 0.00 0.00 4.83
2196 4497 1.595357 GTGAGAGGGGGTGTTACGG 59.405 63.158 0.00 0.00 0.00 4.02
2197 4498 1.214589 CGTGAGAGGGGGTGTTACG 59.785 63.158 0.00 0.00 0.00 3.18
2198 4499 0.037605 CACGTGAGAGGGGGTGTTAC 60.038 60.000 10.90 0.00 0.00 2.50
2199 4500 0.470456 ACACGTGAGAGGGGGTGTTA 60.470 55.000 25.01 0.00 40.46 2.41
2200 4501 1.764854 ACACGTGAGAGGGGGTGTT 60.765 57.895 25.01 0.00 40.46 3.32
2201 4502 2.122989 ACACGTGAGAGGGGGTGT 60.123 61.111 25.01 0.00 38.69 4.16
2202 4503 2.207229 TCACACGTGAGAGGGGGTG 61.207 63.158 25.01 7.41 34.14 4.61
2203 4504 2.200370 TCACACGTGAGAGGGGGT 59.800 61.111 25.01 0.00 34.14 4.95
2204 4505 2.657237 GTCACACGTGAGAGGGGG 59.343 66.667 25.01 0.00 40.75 5.40
2205 4506 2.258591 CGTCACACGTGAGAGGGG 59.741 66.667 25.01 8.32 40.75 4.79
2206 4507 2.258591 CCGTCACACGTGAGAGGG 59.741 66.667 30.75 30.75 40.58 4.30
2207 4508 2.258591 CCCGTCACACGTGAGAGG 59.741 66.667 25.01 23.93 40.58 3.69
2208 4509 1.802337 TTCCCCGTCACACGTGAGAG 61.802 60.000 25.01 13.12 40.58 3.20
2209 4510 1.802337 CTTCCCCGTCACACGTGAGA 61.802 60.000 25.01 18.14 40.58 3.27
2210 4511 1.372997 CTTCCCCGTCACACGTGAG 60.373 63.158 25.01 15.63 40.58 3.51
2211 4512 1.829096 TCTTCCCCGTCACACGTGA 60.829 57.895 25.01 0.00 40.58 4.35
2212 4513 1.663702 GTCTTCCCCGTCACACGTG 60.664 63.158 15.48 15.48 40.58 4.49
2213 4514 1.678598 TTGTCTTCCCCGTCACACGT 61.679 55.000 0.00 0.00 40.58 4.49
2214 4515 0.944311 CTTGTCTTCCCCGTCACACG 60.944 60.000 0.00 0.00 42.11 4.49
2215 4516 0.106149 ACTTGTCTTCCCCGTCACAC 59.894 55.000 0.00 0.00 0.00 3.82
2216 4517 0.391597 GACTTGTCTTCCCCGTCACA 59.608 55.000 0.00 0.00 0.00 3.58
2217 4518 0.391597 TGACTTGTCTTCCCCGTCAC 59.608 55.000 2.35 0.00 30.41 3.67
2218 4519 1.124780 TTGACTTGTCTTCCCCGTCA 58.875 50.000 2.35 0.00 33.25 4.35
2219 4520 1.202604 TGTTGACTTGTCTTCCCCGTC 60.203 52.381 2.35 0.00 0.00 4.79
2220 4521 0.834612 TGTTGACTTGTCTTCCCCGT 59.165 50.000 2.35 0.00 0.00 5.28
2221 4522 1.226746 GTGTTGACTTGTCTTCCCCG 58.773 55.000 2.35 0.00 0.00 5.73
2222 4523 1.226746 CGTGTTGACTTGTCTTCCCC 58.773 55.000 2.35 0.00 0.00 4.81
2223 4524 1.597663 CACGTGTTGACTTGTCTTCCC 59.402 52.381 7.58 0.00 0.00 3.97
2224 4525 1.003866 GCACGTGTTGACTTGTCTTCC 60.004 52.381 18.38 0.00 0.00 3.46
2225 4526 1.663643 TGCACGTGTTGACTTGTCTTC 59.336 47.619 18.38 0.00 0.00 2.87
2226 4527 1.732941 TGCACGTGTTGACTTGTCTT 58.267 45.000 18.38 0.00 0.00 3.01
2227 4528 1.396996 GTTGCACGTGTTGACTTGTCT 59.603 47.619 18.38 0.00 0.00 3.41
2228 4529 1.531058 GGTTGCACGTGTTGACTTGTC 60.531 52.381 18.38 0.00 0.00 3.18
2229 4530 0.450184 GGTTGCACGTGTTGACTTGT 59.550 50.000 18.38 0.00 0.00 3.16
2230 4531 0.449786 TGGTTGCACGTGTTGACTTG 59.550 50.000 18.38 0.00 0.00 3.16
2231 4532 0.732571 CTGGTTGCACGTGTTGACTT 59.267 50.000 18.38 0.00 0.00 3.01
2232 4533 0.107897 TCTGGTTGCACGTGTTGACT 60.108 50.000 18.38 0.00 0.00 3.41
2233 4534 0.730265 TTCTGGTTGCACGTGTTGAC 59.270 50.000 18.38 12.75 0.00 3.18
2234 4535 1.013596 CTTCTGGTTGCACGTGTTGA 58.986 50.000 18.38 0.13 0.00 3.18
2235 4536 1.003545 CTCTTCTGGTTGCACGTGTTG 60.004 52.381 18.38 1.70 0.00 3.33
2236 4537 1.134521 TCTCTTCTGGTTGCACGTGTT 60.135 47.619 18.38 0.00 0.00 3.32
2237 4538 0.464036 TCTCTTCTGGTTGCACGTGT 59.536 50.000 18.38 0.00 0.00 4.49
2238 4539 1.143305 CTCTCTTCTGGTTGCACGTG 58.857 55.000 12.28 12.28 0.00 4.49
2239 4540 0.601311 GCTCTCTTCTGGTTGCACGT 60.601 55.000 0.00 0.00 0.00 4.49
2240 4541 1.621301 CGCTCTCTTCTGGTTGCACG 61.621 60.000 0.00 0.00 0.00 5.34
2241 4542 0.319900 TCGCTCTCTTCTGGTTGCAC 60.320 55.000 0.00 0.00 0.00 4.57
2242 4543 0.319900 GTCGCTCTCTTCTGGTTGCA 60.320 55.000 0.00 0.00 0.00 4.08
2243 4544 1.347817 CGTCGCTCTCTTCTGGTTGC 61.348 60.000 0.00 0.00 0.00 4.17
2244 4545 0.734253 CCGTCGCTCTCTTCTGGTTG 60.734 60.000 0.00 0.00 0.00 3.77
2245 4546 1.587054 CCGTCGCTCTCTTCTGGTT 59.413 57.895 0.00 0.00 0.00 3.67
2246 4547 2.995872 GCCGTCGCTCTCTTCTGGT 61.996 63.158 0.00 0.00 0.00 4.00
2247 4548 2.202676 GCCGTCGCTCTCTTCTGG 60.203 66.667 0.00 0.00 0.00 3.86
2248 4549 2.578178 CGCCGTCGCTCTCTTCTG 60.578 66.667 0.00 0.00 0.00 3.02
2261 4562 4.851114 CATGAGTTTCGCGCGCCG 62.851 66.667 27.95 20.60 38.61 6.46
2262 4563 1.762222 ATACATGAGTTTCGCGCGCC 61.762 55.000 27.95 15.44 0.00 6.53
2263 4564 0.651610 CATACATGAGTTTCGCGCGC 60.652 55.000 27.95 23.91 0.00 6.86
2264 4565 0.920664 TCATACATGAGTTTCGCGCG 59.079 50.000 26.76 26.76 32.11 6.86
2265 4566 1.927174 AGTCATACATGAGTTTCGCGC 59.073 47.619 0.00 0.00 37.15 6.86
2266 4567 3.179048 TGAGTCATACATGAGTTTCGCG 58.821 45.455 0.00 0.00 40.38 5.87
2267 4568 4.864806 TCTTGAGTCATACATGAGTTTCGC 59.135 41.667 0.00 0.00 40.38 4.70
2268 4569 5.518128 CCTCTTGAGTCATACATGAGTTTCG 59.482 44.000 0.00 0.00 40.38 3.46
2269 4570 5.293079 GCCTCTTGAGTCATACATGAGTTTC 59.707 44.000 0.00 0.00 40.38 2.78
2270 4571 5.181748 GCCTCTTGAGTCATACATGAGTTT 58.818 41.667 0.00 0.00 40.38 2.66
2271 4572 4.383552 GGCCTCTTGAGTCATACATGAGTT 60.384 45.833 0.00 0.00 40.38 3.01
2272 4573 3.133721 GGCCTCTTGAGTCATACATGAGT 59.866 47.826 0.00 0.00 42.85 3.41
2273 4574 3.387374 AGGCCTCTTGAGTCATACATGAG 59.613 47.826 0.00 0.00 37.51 2.90
2274 4575 3.378512 AGGCCTCTTGAGTCATACATGA 58.621 45.455 0.00 0.00 0.00 3.07
2275 4576 3.387374 AGAGGCCTCTTGAGTCATACATG 59.613 47.826 30.40 0.00 36.31 3.21
2276 4577 3.652055 AGAGGCCTCTTGAGTCATACAT 58.348 45.455 30.40 2.58 36.31 2.29
2277 4578 3.107402 AGAGGCCTCTTGAGTCATACA 57.893 47.619 30.40 0.00 36.31 2.29
2278 4579 3.003897 CGTAGAGGCCTCTTGAGTCATAC 59.996 52.174 39.23 25.89 40.93 2.39
2279 4580 3.215151 CGTAGAGGCCTCTTGAGTCATA 58.785 50.000 39.23 17.06 40.93 2.15
2280 4581 2.028130 CGTAGAGGCCTCTTGAGTCAT 58.972 52.381 39.23 16.15 40.93 3.06
2281 4582 1.271982 ACGTAGAGGCCTCTTGAGTCA 60.272 52.381 39.23 18.66 40.93 3.41
2282 4583 1.133407 CACGTAGAGGCCTCTTGAGTC 59.867 57.143 39.23 21.72 40.93 3.36
2283 4584 1.178276 CACGTAGAGGCCTCTTGAGT 58.822 55.000 39.23 29.96 40.93 3.41
2284 4585 0.457851 CCACGTAGAGGCCTCTTGAG 59.542 60.000 39.23 29.35 40.93 3.02
2285 4586 0.039180 TCCACGTAGAGGCCTCTTGA 59.961 55.000 39.23 21.08 40.93 3.02
2286 4587 0.173708 GTCCACGTAGAGGCCTCTTG 59.826 60.000 39.23 31.23 40.93 3.02
2287 4588 0.251653 TGTCCACGTAGAGGCCTCTT 60.252 55.000 39.23 20.28 40.93 2.85
2288 4589 0.966370 GTGTCCACGTAGAGGCCTCT 60.966 60.000 36.62 36.62 43.40 3.69
2289 4590 1.248785 TGTGTCCACGTAGAGGCCTC 61.249 60.000 26.22 26.22 38.46 4.70
2290 4591 0.830444 TTGTGTCCACGTAGAGGCCT 60.830 55.000 3.86 3.86 38.46 5.19
2291 4592 0.034337 TTTGTGTCCACGTAGAGGCC 59.966 55.000 0.00 0.00 38.46 5.19
2292 4593 1.732259 CATTTGTGTCCACGTAGAGGC 59.268 52.381 0.00 0.00 38.46 4.70
2293 4594 2.346803 CCATTTGTGTCCACGTAGAGG 58.653 52.381 0.00 0.00 40.53 3.69
2294 4595 2.346803 CCCATTTGTGTCCACGTAGAG 58.653 52.381 0.00 0.00 0.00 2.43
2295 4596 1.002659 CCCCATTTGTGTCCACGTAGA 59.997 52.381 0.00 0.00 0.00 2.59
2296 4597 1.448985 CCCCATTTGTGTCCACGTAG 58.551 55.000 0.00 0.00 0.00 3.51
2297 4598 0.037017 CCCCCATTTGTGTCCACGTA 59.963 55.000 0.00 0.00 0.00 3.57
2298 4599 1.228429 CCCCCATTTGTGTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
2299 4600 2.635443 GCCCCCATTTGTGTCCACG 61.635 63.158 0.00 0.00 0.00 4.94
2300 4601 0.039035 TAGCCCCCATTTGTGTCCAC 59.961 55.000 0.00 0.00 0.00 4.02
2301 4602 0.039035 GTAGCCCCCATTTGTGTCCA 59.961 55.000 0.00 0.00 0.00 4.02
2302 4603 0.683179 GGTAGCCCCCATTTGTGTCC 60.683 60.000 0.00 0.00 0.00 4.02
2303 4604 0.039035 TGGTAGCCCCCATTTGTGTC 59.961 55.000 0.00 0.00 0.00 3.67
2304 4605 0.039618 CTGGTAGCCCCCATTTGTGT 59.960 55.000 0.00 0.00 33.00 3.72
2305 4606 1.322538 GCTGGTAGCCCCCATTTGTG 61.323 60.000 0.00 0.00 34.48 3.33
2306 4607 1.000359 GCTGGTAGCCCCCATTTGT 60.000 57.895 0.00 0.00 34.48 2.83
2307 4608 0.614415 TTGCTGGTAGCCCCCATTTG 60.614 55.000 0.00 0.00 41.51 2.32
2308 4609 0.339510 ATTGCTGGTAGCCCCCATTT 59.660 50.000 0.00 0.00 41.51 2.32
2309 4610 0.339510 AATTGCTGGTAGCCCCCATT 59.660 50.000 0.00 0.00 41.51 3.16
2310 4611 0.339510 AAATTGCTGGTAGCCCCCAT 59.660 50.000 0.00 0.00 41.51 4.00
2311 4612 0.116143 AAAATTGCTGGTAGCCCCCA 59.884 50.000 0.00 0.00 41.51 4.96
2312 4613 1.275666 AAAAATTGCTGGTAGCCCCC 58.724 50.000 0.00 0.00 41.51 5.40
2313 4614 4.753516 ATTAAAAATTGCTGGTAGCCCC 57.246 40.909 0.00 0.00 41.51 5.80
2314 4615 8.611757 CAATTTATTAAAAATTGCTGGTAGCCC 58.388 33.333 16.05 0.00 41.51 5.19
2324 4625 9.264782 CTGGCTTTCGCAATTTATTAAAAATTG 57.735 29.630 20.10 20.10 45.53 2.32
2325 4626 8.450180 CCTGGCTTTCGCAATTTATTAAAAATT 58.550 29.630 0.00 3.83 38.10 1.82
2326 4627 7.821846 TCCTGGCTTTCGCAATTTATTAAAAAT 59.178 29.630 0.00 0.00 38.10 1.82
2327 4628 7.117092 GTCCTGGCTTTCGCAATTTATTAAAAA 59.883 33.333 0.00 0.00 38.10 1.94
2328 4629 6.588373 GTCCTGGCTTTCGCAATTTATTAAAA 59.412 34.615 0.00 0.00 38.10 1.52
2329 4630 6.071616 AGTCCTGGCTTTCGCAATTTATTAAA 60.072 34.615 0.00 0.00 38.10 1.52
2330 4631 5.417580 AGTCCTGGCTTTCGCAATTTATTAA 59.582 36.000 0.00 0.00 38.10 1.40
2331 4632 4.947388 AGTCCTGGCTTTCGCAATTTATTA 59.053 37.500 0.00 0.00 38.10 0.98
2332 4633 3.763897 AGTCCTGGCTTTCGCAATTTATT 59.236 39.130 0.00 0.00 38.10 1.40
2333 4634 3.356290 AGTCCTGGCTTTCGCAATTTAT 58.644 40.909 0.00 0.00 38.10 1.40
2334 4635 2.790433 AGTCCTGGCTTTCGCAATTTA 58.210 42.857 0.00 0.00 38.10 1.40
2335 4636 1.620822 AGTCCTGGCTTTCGCAATTT 58.379 45.000 0.00 0.00 38.10 1.82
2336 4637 1.270550 CAAGTCCTGGCTTTCGCAATT 59.729 47.619 1.37 0.00 38.10 2.32
2337 4638 0.883833 CAAGTCCTGGCTTTCGCAAT 59.116 50.000 1.37 0.00 38.10 3.56
2338 4639 0.179032 TCAAGTCCTGGCTTTCGCAA 60.179 50.000 1.37 0.00 38.10 4.85
2339 4640 0.179032 TTCAAGTCCTGGCTTTCGCA 60.179 50.000 1.37 0.00 38.10 5.10
2340 4641 0.238553 GTTCAAGTCCTGGCTTTCGC 59.761 55.000 1.37 0.00 0.00 4.70
2341 4642 1.801178 GAGTTCAAGTCCTGGCTTTCG 59.199 52.381 1.37 0.00 0.00 3.46
2342 4643 2.851195 TGAGTTCAAGTCCTGGCTTTC 58.149 47.619 1.37 0.00 0.00 2.62
2343 4644 3.217626 CTTGAGTTCAAGTCCTGGCTTT 58.782 45.455 12.61 0.00 46.11 3.51
2344 4645 2.856222 CTTGAGTTCAAGTCCTGGCTT 58.144 47.619 12.61 0.00 46.11 4.35
2345 4646 2.557920 CTTGAGTTCAAGTCCTGGCT 57.442 50.000 12.61 0.00 46.11 4.75
2354 4655 4.038763 TCGAAGCTAAGGTCTTGAGTTCAA 59.961 41.667 0.00 0.00 0.00 2.69
2355 4656 3.572682 TCGAAGCTAAGGTCTTGAGTTCA 59.427 43.478 0.00 0.00 0.00 3.18
2356 4657 4.175787 TCGAAGCTAAGGTCTTGAGTTC 57.824 45.455 0.00 0.00 0.00 3.01
2357 4658 4.810191 ATCGAAGCTAAGGTCTTGAGTT 57.190 40.909 0.00 0.00 0.00 3.01
2358 4659 4.098196 GGTATCGAAGCTAAGGTCTTGAGT 59.902 45.833 0.00 0.00 0.00 3.41
2359 4660 4.098044 TGGTATCGAAGCTAAGGTCTTGAG 59.902 45.833 0.00 0.00 0.00 3.02
2360 4661 4.021229 TGGTATCGAAGCTAAGGTCTTGA 58.979 43.478 0.00 0.00 0.00 3.02
2361 4662 4.386867 TGGTATCGAAGCTAAGGTCTTG 57.613 45.455 0.00 0.00 0.00 3.02
2362 4663 4.406003 ACATGGTATCGAAGCTAAGGTCTT 59.594 41.667 0.00 0.00 0.00 3.01
2363 4664 3.961408 ACATGGTATCGAAGCTAAGGTCT 59.039 43.478 0.00 0.00 0.00 3.85
2364 4665 4.323553 ACATGGTATCGAAGCTAAGGTC 57.676 45.455 0.00 0.00 0.00 3.85
2365 4666 4.755266 AACATGGTATCGAAGCTAAGGT 57.245 40.909 0.00 0.00 0.00 3.50
2366 4667 5.465724 GGTTAACATGGTATCGAAGCTAAGG 59.534 44.000 8.10 0.00 0.00 2.69
2367 4668 6.281405 AGGTTAACATGGTATCGAAGCTAAG 58.719 40.000 8.10 0.00 0.00 2.18
2368 4669 6.229936 AGGTTAACATGGTATCGAAGCTAA 57.770 37.500 8.10 0.00 0.00 3.09
2369 4670 5.864418 AGGTTAACATGGTATCGAAGCTA 57.136 39.130 8.10 0.00 0.00 3.32
2370 4671 4.755266 AGGTTAACATGGTATCGAAGCT 57.245 40.909 8.10 0.00 0.00 3.74
2371 4672 4.873827 TGAAGGTTAACATGGTATCGAAGC 59.126 41.667 8.10 0.00 0.00 3.86
2372 4673 6.511767 GCATGAAGGTTAACATGGTATCGAAG 60.512 42.308 8.10 0.00 42.53 3.79
2373 4674 5.295787 GCATGAAGGTTAACATGGTATCGAA 59.704 40.000 8.10 0.00 42.53 3.71
2374 4675 4.814234 GCATGAAGGTTAACATGGTATCGA 59.186 41.667 8.10 0.00 42.53 3.59
2375 4676 4.574421 TGCATGAAGGTTAACATGGTATCG 59.426 41.667 8.10 0.00 42.53 2.92
2376 4677 5.590259 AGTGCATGAAGGTTAACATGGTATC 59.410 40.000 8.10 0.00 42.53 2.24
2377 4678 5.509498 AGTGCATGAAGGTTAACATGGTAT 58.491 37.500 8.10 0.00 42.53 2.73
2378 4679 4.917385 AGTGCATGAAGGTTAACATGGTA 58.083 39.130 8.10 0.00 42.53 3.25
2379 4680 3.766545 AGTGCATGAAGGTTAACATGGT 58.233 40.909 8.10 0.00 42.53 3.55
2380 4681 4.201950 GCTAGTGCATGAAGGTTAACATGG 60.202 45.833 8.10 0.00 42.53 3.66
2381 4682 4.201950 GGCTAGTGCATGAAGGTTAACATG 60.202 45.833 8.10 3.79 44.32 3.21
2382 4683 3.947834 GGCTAGTGCATGAAGGTTAACAT 59.052 43.478 8.10 0.00 41.91 2.71
2383 4684 3.244735 TGGCTAGTGCATGAAGGTTAACA 60.245 43.478 8.10 0.00 41.91 2.41
2384 4685 3.343617 TGGCTAGTGCATGAAGGTTAAC 58.656 45.455 0.00 0.00 41.91 2.01
2385 4686 3.712016 TGGCTAGTGCATGAAGGTTAA 57.288 42.857 0.00 0.00 41.91 2.01
2386 4687 3.343617 GTTGGCTAGTGCATGAAGGTTA 58.656 45.455 0.00 0.00 41.91 2.85
2387 4688 2.162681 GTTGGCTAGTGCATGAAGGTT 58.837 47.619 0.00 0.00 41.91 3.50
2388 4689 1.826385 GTTGGCTAGTGCATGAAGGT 58.174 50.000 0.00 0.00 41.91 3.50
2389 4690 0.729116 CGTTGGCTAGTGCATGAAGG 59.271 55.000 0.00 0.00 41.91 3.46
2390 4691 0.097674 GCGTTGGCTAGTGCATGAAG 59.902 55.000 0.00 0.00 41.91 3.02
2391 4692 0.605050 TGCGTTGGCTAGTGCATGAA 60.605 50.000 0.00 0.00 41.91 2.57
2392 4693 0.605050 TTGCGTTGGCTAGTGCATGA 60.605 50.000 0.00 0.00 41.91 3.07
2393 4694 0.454957 GTTGCGTTGGCTAGTGCATG 60.455 55.000 0.00 0.00 41.91 4.06
2394 4695 1.586154 GGTTGCGTTGGCTAGTGCAT 61.586 55.000 0.00 0.00 41.91 3.96
2395 4696 2.258013 GGTTGCGTTGGCTAGTGCA 61.258 57.895 0.00 0.00 41.91 4.57
2396 4697 1.791103 TTGGTTGCGTTGGCTAGTGC 61.791 55.000 0.00 0.00 40.82 4.40
2397 4698 0.665835 TTTGGTTGCGTTGGCTAGTG 59.334 50.000 0.00 0.00 40.82 2.74
2398 4699 1.394618 TTTTGGTTGCGTTGGCTAGT 58.605 45.000 0.00 0.00 40.82 2.57
2399 4700 2.500509 TTTTTGGTTGCGTTGGCTAG 57.499 45.000 0.00 0.00 40.82 3.42
2400 4701 2.288518 GGATTTTTGGTTGCGTTGGCTA 60.289 45.455 0.00 0.00 40.82 3.93
2401 4702 1.540146 GGATTTTTGGTTGCGTTGGCT 60.540 47.619 0.00 0.00 40.82 4.75
2402 4703 0.865111 GGATTTTTGGTTGCGTTGGC 59.135 50.000 0.00 0.00 40.52 4.52
2403 4704 1.135867 CGGATTTTTGGTTGCGTTGG 58.864 50.000 0.00 0.00 0.00 3.77
2404 4705 2.126914 TCGGATTTTTGGTTGCGTTG 57.873 45.000 0.00 0.00 0.00 4.10
2405 4706 2.100087 AGTTCGGATTTTTGGTTGCGTT 59.900 40.909 0.00 0.00 0.00 4.84
2406 4707 1.679153 AGTTCGGATTTTTGGTTGCGT 59.321 42.857 0.00 0.00 0.00 5.24
2407 4708 2.415697 AGTTCGGATTTTTGGTTGCG 57.584 45.000 0.00 0.00 0.00 4.85
2408 4709 4.625311 CCATAAGTTCGGATTTTTGGTTGC 59.375 41.667 0.91 0.00 0.00 4.17
2409 4710 6.019779 TCCATAAGTTCGGATTTTTGGTTG 57.980 37.500 8.03 0.00 29.67 3.77
2410 4711 6.658188 TTCCATAAGTTCGGATTTTTGGTT 57.342 33.333 8.03 0.00 29.67 3.67
2411 4712 6.492087 TCTTTCCATAAGTTCGGATTTTTGGT 59.508 34.615 8.03 0.00 29.67 3.67
2412 4713 6.919721 TCTTTCCATAAGTTCGGATTTTTGG 58.080 36.000 2.48 2.48 0.00 3.28
2413 4714 6.528072 GCTCTTTCCATAAGTTCGGATTTTTG 59.472 38.462 0.00 0.00 0.00 2.44
2414 4715 6.434340 AGCTCTTTCCATAAGTTCGGATTTTT 59.566 34.615 0.00 0.00 0.00 1.94
2415 4716 5.946377 AGCTCTTTCCATAAGTTCGGATTTT 59.054 36.000 0.00 0.00 0.00 1.82
2416 4717 5.501156 AGCTCTTTCCATAAGTTCGGATTT 58.499 37.500 0.00 0.00 0.00 2.17
2417 4718 5.104259 AGCTCTTTCCATAAGTTCGGATT 57.896 39.130 0.00 0.00 0.00 3.01
2418 4719 4.762289 AGCTCTTTCCATAAGTTCGGAT 57.238 40.909 0.00 0.00 0.00 4.18
2419 4720 4.710375 ACTAGCTCTTTCCATAAGTTCGGA 59.290 41.667 0.00 0.00 0.00 4.55
2420 4721 4.806247 CACTAGCTCTTTCCATAAGTTCGG 59.194 45.833 0.00 0.00 0.00 4.30
2421 4722 4.268884 GCACTAGCTCTTTCCATAAGTTCG 59.731 45.833 0.00 0.00 37.91 3.95
2422 4723 5.178797 TGCACTAGCTCTTTCCATAAGTTC 58.821 41.667 0.00 0.00 42.74 3.01
2423 4724 5.165961 TGCACTAGCTCTTTCCATAAGTT 57.834 39.130 0.00 0.00 42.74 2.66
2424 4725 4.826274 TGCACTAGCTCTTTCCATAAGT 57.174 40.909 0.00 0.00 42.74 2.24
2425 4726 5.238214 GGATTGCACTAGCTCTTTCCATAAG 59.762 44.000 0.00 0.00 42.74 1.73
2426 4727 5.126067 GGATTGCACTAGCTCTTTCCATAA 58.874 41.667 0.00 0.00 42.74 1.90
2427 4728 4.164030 TGGATTGCACTAGCTCTTTCCATA 59.836 41.667 0.00 0.00 42.74 2.74
2428 4729 3.054139 TGGATTGCACTAGCTCTTTCCAT 60.054 43.478 0.00 0.00 42.74 3.41
2429 4730 2.305635 TGGATTGCACTAGCTCTTTCCA 59.694 45.455 0.00 0.00 42.74 3.53
2430 4731 2.680339 GTGGATTGCACTAGCTCTTTCC 59.320 50.000 0.45 0.00 42.74 3.13
2431 4732 3.338249 TGTGGATTGCACTAGCTCTTTC 58.662 45.455 9.80 0.00 42.74 2.62
2432 4733 3.423539 TGTGGATTGCACTAGCTCTTT 57.576 42.857 9.80 0.00 42.74 2.52
2433 4734 3.641434 ATGTGGATTGCACTAGCTCTT 57.359 42.857 9.80 0.00 42.74 2.85
2434 4735 4.970860 ATATGTGGATTGCACTAGCTCT 57.029 40.909 9.80 0.00 42.74 4.09
2435 4736 6.652481 ACAATATATGTGGATTGCACTAGCTC 59.348 38.462 9.80 0.00 41.93 4.09
2436 4737 6.537355 ACAATATATGTGGATTGCACTAGCT 58.463 36.000 9.80 0.00 41.93 3.32
2437 4738 6.808008 ACAATATATGTGGATTGCACTAGC 57.192 37.500 9.80 0.00 41.93 3.42
2438 4739 9.271828 TGTTACAATATATGTGGATTGCACTAG 57.728 33.333 9.80 0.00 43.77 2.57
2439 4740 9.620259 TTGTTACAATATATGTGGATTGCACTA 57.380 29.630 9.80 0.72 43.77 2.74
2440 4741 8.518430 TTGTTACAATATATGTGGATTGCACT 57.482 30.769 9.80 0.00 43.77 4.40
2455 4756 9.537192 CGGGAACTACTTGATATTGTTACAATA 57.463 33.333 18.47 18.47 0.00 1.90
2456 4757 8.044908 ACGGGAACTACTTGATATTGTTACAAT 58.955 33.333 15.22 15.22 0.00 2.71
2457 4758 7.332430 CACGGGAACTACTTGATATTGTTACAA 59.668 37.037 0.00 0.00 0.00 2.41
2458 4759 6.814644 CACGGGAACTACTTGATATTGTTACA 59.185 38.462 0.00 0.00 0.00 2.41
2459 4760 6.815142 ACACGGGAACTACTTGATATTGTTAC 59.185 38.462 0.00 0.00 0.00 2.50
2460 4761 6.938507 ACACGGGAACTACTTGATATTGTTA 58.061 36.000 0.00 0.00 0.00 2.41
2461 4762 5.801380 ACACGGGAACTACTTGATATTGTT 58.199 37.500 0.00 0.00 0.00 2.83
2462 4763 5.416271 ACACGGGAACTACTTGATATTGT 57.584 39.130 0.00 0.00 0.00 2.71
2463 4764 9.706691 ATTATACACGGGAACTACTTGATATTG 57.293 33.333 0.00 0.00 0.00 1.90
2464 4765 9.924650 GATTATACACGGGAACTACTTGATATT 57.075 33.333 0.00 0.00 0.00 1.28
2465 4766 9.085645 TGATTATACACGGGAACTACTTGATAT 57.914 33.333 0.00 0.00 0.00 1.63
2466 4767 8.467963 TGATTATACACGGGAACTACTTGATA 57.532 34.615 0.00 0.00 0.00 2.15
2467 4768 7.356089 TGATTATACACGGGAACTACTTGAT 57.644 36.000 0.00 0.00 0.00 2.57
2468 4769 6.778834 TGATTATACACGGGAACTACTTGA 57.221 37.500 0.00 0.00 0.00 3.02
2469 4770 7.042051 CCATTGATTATACACGGGAACTACTTG 60.042 40.741 0.00 0.00 0.00 3.16
2472 4773 5.699458 CCCATTGATTATACACGGGAACTAC 59.301 44.000 0.00 0.00 33.83 2.73
2474 4775 4.714632 CCCATTGATTATACACGGGAACT 58.285 43.478 0.00 0.00 33.83 3.01
2596 4898 8.090214 ACAATATGTATTGATAAAAGCCATGGC 58.910 33.333 30.12 30.12 44.40 4.40
2689 4992 3.194116 CGTGCTCCCTTAAGTACAGGTTA 59.806 47.826 0.97 0.00 32.06 2.85
2708 5012 2.357952 TGCAGTGCTCCTATACTACGTG 59.642 50.000 17.60 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.