Multiple sequence alignment - TraesCS2A01G077700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G077700 chr2A 100.000 3334 0 0 1 3334 35488796 35492129 0.000000e+00 6157.0
1 TraesCS2A01G077700 chr2A 86.207 116 16 0 580 695 767033319 767033434 3.490000e-25 126.0
2 TraesCS2A01G077700 chr2B 89.531 2474 190 35 301 2769 53147628 53150037 0.000000e+00 3070.0
3 TraesCS2A01G077700 chr2B 82.118 2276 329 49 287 2533 53297979 53300205 0.000000e+00 1877.0
4 TraesCS2A01G077700 chr2B 79.795 2534 405 71 287 2772 53429601 53432075 0.000000e+00 1744.0
5 TraesCS2A01G077700 chr2B 83.242 1832 246 40 168 1968 53406845 53408646 0.000000e+00 1626.0
6 TraesCS2A01G077700 chr2B 85.576 825 100 11 1478 2294 53458981 53459794 0.000000e+00 846.0
7 TraesCS2A01G077700 chr2B 89.577 307 29 1 367 670 53458468 53458774 1.450000e-103 387.0
8 TraesCS2A01G077700 chr2B 88.421 190 12 4 3139 3321 53445597 53445783 1.560000e-53 220.0
9 TraesCS2A01G077700 chr2B 84.653 202 21 4 3139 3333 53402837 53403035 3.390000e-45 193.0
10 TraesCS2A01G077700 chr2B 92.683 82 6 0 2907 2988 53441893 53441974 5.840000e-23 119.0
11 TraesCS2A01G077700 chr2B 93.750 64 4 0 3091 3154 53414105 53414168 2.740000e-16 97.1
12 TraesCS2A01G077700 chr2B 100.000 32 0 0 2841 2872 53413325 53413356 3.590000e-05 60.2
13 TraesCS2A01G077700 chr2D 90.722 2037 144 15 291 2315 32470016 32472019 0.000000e+00 2673.0
14 TraesCS2A01G077700 chr2D 93.596 406 24 1 2929 3332 32472029 32472434 3.680000e-169 604.0
15 TraesCS2A01G077700 chr2D 79.730 148 28 2 580 726 642123545 642123399 4.550000e-19 106.0
16 TraesCS2A01G077700 chr2D 100.000 31 0 0 2842 2872 394052007 394051977 1.290000e-04 58.4
17 TraesCS2A01G077700 chr2D 100.000 31 0 0 2842 2872 558198886 558198856 1.290000e-04 58.4
18 TraesCS2A01G077700 chr6A 79.266 545 99 11 342 879 35150800 35150263 5.250000e-98 368.0
19 TraesCS2A01G077700 chr3D 75.393 573 117 12 342 897 569207973 569208538 4.270000e-64 255.0
20 TraesCS2A01G077700 chrUn 97.222 36 1 0 2835 2870 85643725 85643690 9.990000e-06 62.1
21 TraesCS2A01G077700 chr3A 100.000 32 0 0 2842 2873 15457804 15457835 3.590000e-05 60.2
22 TraesCS2A01G077700 chr5D 100.000 31 0 0 2842 2872 330900395 330900425 1.290000e-04 58.4
23 TraesCS2A01G077700 chr4B 100.000 31 0 0 2842 2872 28960833 28960863 1.290000e-04 58.4
24 TraesCS2A01G077700 chr1D 100.000 31 0 0 2842 2872 58567835 58567865 1.290000e-04 58.4
25 TraesCS2A01G077700 chr1A 100.000 31 0 0 2841 2871 497340029 497340059 1.290000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G077700 chr2A 35488796 35492129 3333 False 6157.0 6157 100.0000 1 3334 1 chr2A.!!$F1 3333
1 TraesCS2A01G077700 chr2B 53147628 53150037 2409 False 3070.0 3070 89.5310 301 2769 1 chr2B.!!$F1 2468
2 TraesCS2A01G077700 chr2B 53297979 53300205 2226 False 1877.0 1877 82.1180 287 2533 1 chr2B.!!$F2 2246
3 TraesCS2A01G077700 chr2B 53429601 53432075 2474 False 1744.0 1744 79.7950 287 2772 1 chr2B.!!$F3 2485
4 TraesCS2A01G077700 chr2B 53402837 53408646 5809 False 909.5 1626 83.9475 168 3333 2 chr2B.!!$F4 3165
5 TraesCS2A01G077700 chr2B 53458468 53459794 1326 False 616.5 846 87.5765 367 2294 2 chr2B.!!$F7 1927
6 TraesCS2A01G077700 chr2D 32470016 32472434 2418 False 1638.5 2673 92.1590 291 3332 2 chr2D.!!$F1 3041
7 TraesCS2A01G077700 chr6A 35150263 35150800 537 True 368.0 368 79.2660 342 879 1 chr6A.!!$R1 537
8 TraesCS2A01G077700 chr3D 569207973 569208538 565 False 255.0 255 75.3930 342 897 1 chr3D.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.031449 GCCGGTCAGCAGTAGATCTC 59.969 60.0 1.9 0.0 0.00 2.75 F
228 4069 0.036765 CAGCTAACCACGGCAGGTAA 60.037 55.0 0.0 0.0 42.25 2.85 F
1614 5484 0.039708 GCTGCTGAAGGAACAACTGC 60.040 55.0 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 5820 0.390603 TCCACGGCCGAGTTGTATTG 60.391 55.0 35.9 17.04 0.00 1.90 R
1951 5833 0.462047 GATCAAATCCACGGCCGAGT 60.462 55.0 35.9 7.50 0.00 4.18 R
2892 6813 0.107703 TTCCAAGCTCCAGCCATACG 60.108 55.0 0.0 0.00 43.38 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.829886 TTTTCACGTGGATGATTGAGC 57.170 42.857 17.00 0.00 0.00 4.26
29 30 2.470983 TTCACGTGGATGATTGAGCA 57.529 45.000 17.00 0.00 0.00 4.26
30 31 2.696989 TCACGTGGATGATTGAGCAT 57.303 45.000 17.00 0.00 0.00 3.79
31 32 3.817709 TCACGTGGATGATTGAGCATA 57.182 42.857 17.00 0.00 0.00 3.14
32 33 4.341366 TCACGTGGATGATTGAGCATAT 57.659 40.909 17.00 0.00 0.00 1.78
35 36 3.811497 ACGTGGATGATTGAGCATATGTG 59.189 43.478 4.29 0.00 0.00 3.21
55 56 9.875691 ATATGTGCTTATATACACTACACCATG 57.124 33.333 7.06 0.00 37.68 3.66
56 57 7.119709 TGTGCTTATATACACTACACCATGT 57.880 36.000 7.06 0.00 37.68 3.21
57 58 7.561251 TGTGCTTATATACACTACACCATGTT 58.439 34.615 7.06 0.00 37.68 2.71
58 59 8.697292 TGTGCTTATATACACTACACCATGTTA 58.303 33.333 7.06 0.00 37.68 2.41
61 62 9.706691 GCTTATATACACTACACCATGTTATGT 57.293 33.333 0.00 0.00 33.59 2.29
63 64 9.902196 TTATATACACTACACCATGTTATGTCG 57.098 33.333 0.00 0.00 32.08 4.35
64 65 3.259064 ACACTACACCATGTTATGTCGC 58.741 45.455 0.00 0.00 0.00 5.19
65 66 3.258228 CACTACACCATGTTATGTCGCA 58.742 45.455 0.00 0.00 0.00 5.10
66 67 3.871006 CACTACACCATGTTATGTCGCAT 59.129 43.478 0.00 0.00 0.00 4.73
67 68 4.025730 CACTACACCATGTTATGTCGCATC 60.026 45.833 0.00 0.00 0.00 3.91
68 69 2.984562 ACACCATGTTATGTCGCATCA 58.015 42.857 0.00 0.00 0.00 3.07
69 70 3.544684 ACACCATGTTATGTCGCATCAT 58.455 40.909 0.00 0.00 0.00 2.45
70 71 4.702831 ACACCATGTTATGTCGCATCATA 58.297 39.130 0.00 0.00 0.00 2.15
72 73 5.179929 ACACCATGTTATGTCGCATCATATG 59.820 40.000 0.00 0.00 31.58 1.78
74 75 4.696877 CCATGTTATGTCGCATCATATGGT 59.303 41.667 15.24 0.00 31.79 3.55
75 76 5.163824 CCATGTTATGTCGCATCATATGGTC 60.164 44.000 15.24 0.00 31.79 4.02
76 77 4.954875 TGTTATGTCGCATCATATGGTCA 58.045 39.130 2.13 0.00 31.58 4.02
78 79 2.531522 TGTCGCATCATATGGTCAGG 57.468 50.000 2.13 0.00 0.00 3.86
79 80 1.762370 TGTCGCATCATATGGTCAGGT 59.238 47.619 2.13 0.00 0.00 4.00
80 81 2.170397 TGTCGCATCATATGGTCAGGTT 59.830 45.455 2.13 0.00 0.00 3.50
82 83 2.146342 CGCATCATATGGTCAGGTTCC 58.854 52.381 2.13 0.00 0.00 3.62
84 85 3.144506 GCATCATATGGTCAGGTTCCAG 58.855 50.000 2.13 0.00 38.42 3.86
86 87 2.195727 TCATATGGTCAGGTTCCAGCA 58.804 47.619 2.13 0.00 38.42 4.41
87 88 2.171237 TCATATGGTCAGGTTCCAGCAG 59.829 50.000 2.13 0.00 38.42 4.24
88 89 0.253044 TATGGTCAGGTTCCAGCAGC 59.747 55.000 0.00 0.00 38.42 5.25
89 90 2.360475 GGTCAGGTTCCAGCAGCC 60.360 66.667 0.00 0.00 0.00 4.85
90 91 2.743928 GTCAGGTTCCAGCAGCCG 60.744 66.667 0.00 0.00 0.00 5.52
91 92 4.020617 TCAGGTTCCAGCAGCCGG 62.021 66.667 0.00 0.00 0.00 6.13
92 93 4.335647 CAGGTTCCAGCAGCCGGT 62.336 66.667 1.90 0.00 0.00 5.28
95 96 2.743928 GTTCCAGCAGCCGGTCAG 60.744 66.667 1.90 0.00 0.00 3.51
99 100 4.694233 CAGCAGCCGGTCAGCAGT 62.694 66.667 15.42 0.00 34.23 4.40
100 101 2.997315 AGCAGCCGGTCAGCAGTA 60.997 61.111 15.42 0.00 34.23 2.74
101 102 2.510238 GCAGCCGGTCAGCAGTAG 60.510 66.667 1.90 0.00 34.23 2.57
102 103 3.006756 GCAGCCGGTCAGCAGTAGA 62.007 63.158 1.90 0.00 34.23 2.59
104 105 0.249238 CAGCCGGTCAGCAGTAGATC 60.249 60.000 1.90 0.00 34.23 2.75
106 107 0.031449 GCCGGTCAGCAGTAGATCTC 59.969 60.000 1.90 0.00 0.00 2.75
107 108 1.393603 CCGGTCAGCAGTAGATCTCA 58.606 55.000 0.00 0.00 0.00 3.27
110 111 3.181471 CCGGTCAGCAGTAGATCTCATTT 60.181 47.826 0.00 0.00 0.00 2.32
111 112 3.801050 CGGTCAGCAGTAGATCTCATTTG 59.199 47.826 0.00 0.00 0.00 2.32
112 113 4.679106 CGGTCAGCAGTAGATCTCATTTGT 60.679 45.833 0.00 0.00 0.00 2.83
113 114 5.181748 GGTCAGCAGTAGATCTCATTTGTT 58.818 41.667 0.00 0.00 0.00 2.83
116 117 6.538021 GTCAGCAGTAGATCTCATTTGTTGAT 59.462 38.462 0.00 0.00 32.72 2.57
117 118 6.760298 TCAGCAGTAGATCTCATTTGTTGATC 59.240 38.462 0.00 0.00 37.46 2.92
118 119 6.018098 CAGCAGTAGATCTCATTTGTTGATCC 60.018 42.308 0.00 0.00 37.80 3.36
119 120 5.238214 GCAGTAGATCTCATTTGTTGATCCC 59.762 44.000 0.00 0.00 37.80 3.85
120 121 6.590068 CAGTAGATCTCATTTGTTGATCCCT 58.410 40.000 0.00 0.00 37.80 4.20
122 123 7.655328 CAGTAGATCTCATTTGTTGATCCCTAC 59.345 40.741 0.00 0.00 37.80 3.18
123 124 6.821616 AGATCTCATTTGTTGATCCCTACT 57.178 37.500 0.00 0.00 37.80 2.57
124 125 6.825610 AGATCTCATTTGTTGATCCCTACTC 58.174 40.000 0.00 0.00 37.80 2.59
125 126 5.011090 TCTCATTTGTTGATCCCTACTCG 57.989 43.478 0.00 0.00 32.72 4.18
126 127 4.709886 TCTCATTTGTTGATCCCTACTCGA 59.290 41.667 0.00 0.00 32.72 4.04
127 128 5.363868 TCTCATTTGTTGATCCCTACTCGAT 59.636 40.000 0.00 0.00 32.72 3.59
128 129 5.601662 TCATTTGTTGATCCCTACTCGATC 58.398 41.667 0.00 0.00 37.29 3.69
129 130 3.710326 TTGTTGATCCCTACTCGATCG 57.290 47.619 9.36 9.36 39.23 3.69
130 131 2.927028 TGTTGATCCCTACTCGATCGA 58.073 47.619 18.32 18.32 39.23 3.59
132 133 1.893544 TGATCCCTACTCGATCGACC 58.106 55.000 15.15 0.00 39.23 4.79
133 134 1.142262 TGATCCCTACTCGATCGACCA 59.858 52.381 15.15 3.62 39.23 4.02
134 135 2.228059 GATCCCTACTCGATCGACCAA 58.772 52.381 15.15 1.30 0.00 3.67
135 136 2.359981 TCCCTACTCGATCGACCAAT 57.640 50.000 15.15 2.71 0.00 3.16
136 137 2.662866 TCCCTACTCGATCGACCAATT 58.337 47.619 15.15 0.00 0.00 2.32
137 138 3.028850 TCCCTACTCGATCGACCAATTT 58.971 45.455 15.15 0.00 0.00 1.82
138 139 3.449737 TCCCTACTCGATCGACCAATTTT 59.550 43.478 15.15 0.00 0.00 1.82
139 140 3.555956 CCCTACTCGATCGACCAATTTTG 59.444 47.826 15.15 4.36 0.00 2.44
141 142 4.630069 CCTACTCGATCGACCAATTTTGTT 59.370 41.667 15.15 0.00 0.00 2.83
142 143 5.121768 CCTACTCGATCGACCAATTTTGTTT 59.878 40.000 15.15 0.00 0.00 2.83
143 144 4.783242 ACTCGATCGACCAATTTTGTTTG 58.217 39.130 15.15 2.02 0.00 2.93
147 148 5.008217 TCGATCGACCAATTTTGTTTGTCTT 59.992 36.000 15.15 0.00 0.00 3.01
148 149 5.339611 CGATCGACCAATTTTGTTTGTCTTC 59.660 40.000 10.26 0.00 0.00 2.87
149 150 5.828299 TCGACCAATTTTGTTTGTCTTCT 57.172 34.783 0.00 0.00 0.00 2.85
150 151 5.577835 TCGACCAATTTTGTTTGTCTTCTG 58.422 37.500 0.00 0.00 0.00 3.02
151 152 4.207019 CGACCAATTTTGTTTGTCTTCTGC 59.793 41.667 0.00 0.00 0.00 4.26
154 155 6.507023 ACCAATTTTGTTTGTCTTCTGCTAG 58.493 36.000 0.00 0.00 0.00 3.42
155 156 5.403466 CCAATTTTGTTTGTCTTCTGCTAGC 59.597 40.000 8.10 8.10 0.00 3.42
157 158 7.362662 CAATTTTGTTTGTCTTCTGCTAGCTA 58.637 34.615 17.23 0.72 0.00 3.32
158 159 5.924475 TTTGTTTGTCTTCTGCTAGCTAC 57.076 39.130 17.23 6.99 0.00 3.58
159 160 4.600692 TGTTTGTCTTCTGCTAGCTACA 57.399 40.909 17.23 9.43 0.00 2.74
160 161 4.307432 TGTTTGTCTTCTGCTAGCTACAC 58.693 43.478 17.23 6.14 0.00 2.90
161 162 3.594603 TTGTCTTCTGCTAGCTACACC 57.405 47.619 17.23 0.27 0.00 4.16
162 163 1.825474 TGTCTTCTGCTAGCTACACCC 59.175 52.381 17.23 0.80 0.00 4.61
163 164 2.104170 GTCTTCTGCTAGCTACACCCT 58.896 52.381 17.23 0.00 0.00 4.34
164 165 3.288964 GTCTTCTGCTAGCTACACCCTA 58.711 50.000 17.23 0.00 0.00 3.53
165 166 3.067040 GTCTTCTGCTAGCTACACCCTAC 59.933 52.174 17.23 0.68 0.00 3.18
167 168 2.656002 TCTGCTAGCTACACCCTACAG 58.344 52.381 17.23 0.40 0.00 2.74
169 170 0.389757 GCTAGCTACACCCTACAGCC 59.610 60.000 7.70 0.00 35.88 4.85
170 171 0.669077 CTAGCTACACCCTACAGCCG 59.331 60.000 0.00 0.00 35.88 5.52
171 172 0.256752 TAGCTACACCCTACAGCCGA 59.743 55.000 0.00 0.00 35.88 5.54
172 173 1.038130 AGCTACACCCTACAGCCGAG 61.038 60.000 0.00 0.00 35.88 4.63
173 174 1.437986 CTACACCCTACAGCCGAGC 59.562 63.158 0.00 0.00 0.00 5.03
174 175 1.000019 TACACCCTACAGCCGAGCT 60.000 57.895 0.00 0.00 40.77 4.09
189 4030 0.527385 GAGCTGGCAGATCGTCTCAC 60.527 60.000 20.86 0.00 0.00 3.51
190 4031 0.969917 AGCTGGCAGATCGTCTCACT 60.970 55.000 20.86 0.00 0.00 3.41
195 4036 1.599171 GGCAGATCGTCTCACTGATCG 60.599 57.143 0.00 0.00 44.47 3.69
210 4051 1.554617 TGATCGAAGATCAAGCCACCA 59.445 47.619 9.96 0.00 45.12 4.17
221 4062 2.746277 GCCACCAGCTAACCACGG 60.746 66.667 0.00 0.00 38.99 4.94
222 4063 2.746277 CCACCAGCTAACCACGGC 60.746 66.667 0.00 0.00 0.00 5.68
223 4064 2.031919 CACCAGCTAACCACGGCA 59.968 61.111 0.00 0.00 0.00 5.69
224 4065 2.034879 CACCAGCTAACCACGGCAG 61.035 63.158 0.00 0.00 0.00 4.85
225 4066 2.436646 CCAGCTAACCACGGCAGG 60.437 66.667 0.00 0.00 0.00 4.85
226 4067 2.347490 CAGCTAACCACGGCAGGT 59.653 61.111 0.00 0.00 45.91 4.00
227 4068 1.594833 CAGCTAACCACGGCAGGTA 59.405 57.895 0.00 0.00 42.25 3.08
228 4069 0.036765 CAGCTAACCACGGCAGGTAA 60.037 55.000 0.00 0.00 42.25 2.85
229 4070 0.688487 AGCTAACCACGGCAGGTAAA 59.312 50.000 0.00 0.00 42.25 2.01
232 4073 2.610833 GCTAACCACGGCAGGTAAATAC 59.389 50.000 0.00 0.00 42.25 1.89
246 4087 7.148853 GGCAGGTAAATACAAGTTATATCGTCG 60.149 40.741 0.00 0.00 0.00 5.12
252 4093 8.589335 AAATACAAGTTATATCGTCGCATTCT 57.411 30.769 0.00 0.00 0.00 2.40
263 4104 5.389642 TCGTCGCATTCTTATTAGCTTTG 57.610 39.130 0.00 0.00 0.00 2.77
290 4131 2.564771 TGTGACAAAGCTCTGGAAGTG 58.435 47.619 0.00 0.00 33.76 3.16
317 4158 0.596600 AAGTCGTCGTCGTTGCATGT 60.597 50.000 1.33 0.00 38.33 3.21
336 4177 1.611491 GTCCATTTCCAGCGGTGAAAA 59.389 47.619 17.83 9.26 35.52 2.29
337 4178 1.611491 TCCATTTCCAGCGGTGAAAAC 59.389 47.619 17.83 0.00 35.52 2.43
338 4179 1.665735 CCATTTCCAGCGGTGAAAACG 60.666 52.381 17.83 0.00 35.52 3.60
339 4180 1.265635 CATTTCCAGCGGTGAAAACGA 59.734 47.619 17.83 0.70 35.52 3.85
340 4181 1.600023 TTTCCAGCGGTGAAAACGAT 58.400 45.000 17.83 0.00 0.00 3.73
378 4222 2.105930 GCTAGTGGCGCTCTGGAG 59.894 66.667 7.64 0.00 0.00 3.86
577 4436 2.992689 TCGCCGGAGCACCAGTTA 60.993 61.111 5.05 0.00 39.83 2.24
605 4464 1.689233 TGGGCTCCGTTCCTGCTAT 60.689 57.895 0.00 0.00 0.00 2.97
657 4516 2.100197 CTACTCCATCGAGGACAACCA 58.900 52.381 0.00 0.00 43.07 3.67
658 4517 1.573108 ACTCCATCGAGGACAACCAT 58.427 50.000 0.00 0.00 43.07 3.55
916 4775 8.822805 TGAATACCTCACTTATACCAGAACTTT 58.177 33.333 0.00 0.00 0.00 2.66
919 4778 6.702329 ACCTCACTTATACCAGAACTTTGAG 58.298 40.000 0.00 0.00 0.00 3.02
921 4780 6.049955 TCACTTATACCAGAACTTTGAGGG 57.950 41.667 0.00 0.00 0.00 4.30
922 4781 5.783360 TCACTTATACCAGAACTTTGAGGGA 59.217 40.000 0.00 0.00 0.00 4.20
923 4782 6.443849 TCACTTATACCAGAACTTTGAGGGAT 59.556 38.462 0.00 0.00 0.00 3.85
924 4783 6.540189 CACTTATACCAGAACTTTGAGGGATG 59.460 42.308 0.00 0.00 0.00 3.51
1072 4933 1.446792 AACTCTCGCTGATGCACGG 60.447 57.895 0.00 0.00 39.64 4.94
1085 4946 0.108186 TGCACGGCATCTTCTACAGG 60.108 55.000 0.00 0.00 31.71 4.00
1105 4966 5.005740 CAGGAAGAATGAGTTGATCCACAA 58.994 41.667 0.00 0.00 36.02 3.33
1216 5080 4.521130 TCAGCAAAGTAGATCTCGTTGT 57.479 40.909 0.00 0.00 0.00 3.32
1318 5182 2.045438 TTTCACCCGCATCCGCAT 60.045 55.556 0.00 0.00 38.40 4.73
1370 5234 8.258007 AGTCGTCCATTGTTATATCTTCTTGAA 58.742 33.333 0.00 0.00 0.00 2.69
1564 5434 2.093341 ACACACTGGTTTACACGTCCTT 60.093 45.455 0.00 0.00 0.00 3.36
1614 5484 0.039708 GCTGCTGAAGGAACAACTGC 60.040 55.000 0.00 0.00 0.00 4.40
1951 5833 7.862274 AGGTGATCTATCATCTCCAATACAA 57.138 36.000 0.00 0.00 44.64 2.41
1985 5867 5.452356 GGATTTGATCAAGTTAATGCAGGGG 60.452 44.000 8.41 0.00 0.00 4.79
2324 6233 4.271049 TCTGAAGTTCAACAAAGAAGAGCG 59.729 41.667 7.06 0.00 0.00 5.03
2412 6323 3.048600 ACACCACCATAGATAGCACCAT 58.951 45.455 0.00 0.00 0.00 3.55
2537 6449 1.000938 CTCGGTCATCTCGATGCATGA 60.001 52.381 2.46 0.89 38.65 3.07
2543 6455 2.366266 TCATCTCGATGCATGATCACCA 59.634 45.455 2.46 0.00 38.65 4.17
2547 6459 2.036346 CTCGATGCATGATCACCAGGTA 59.964 50.000 2.46 0.00 0.00 3.08
2573 6489 0.605589 CTCCCCGTCCTCATAGATGC 59.394 60.000 0.00 0.00 0.00 3.91
2642 6558 9.672673 CTCTACATATTTCTTTCTCTTTTCCCA 57.327 33.333 0.00 0.00 0.00 4.37
2690 6609 1.019278 GTATGCACCACACCACTCCG 61.019 60.000 0.00 0.00 0.00 4.63
2749 6670 4.992381 AGTCATACTCGAACAAGCAAAC 57.008 40.909 0.00 0.00 0.00 2.93
2752 6673 3.186409 TCATACTCGAACAAGCAAACAGC 59.814 43.478 0.00 0.00 46.19 4.40
2769 6690 4.003584 ACAGCTTAGGTTGGTATAGGGA 57.996 45.455 0.00 0.00 0.00 4.20
2773 6694 6.069029 ACAGCTTAGGTTGGTATAGGGAAAAT 60.069 38.462 0.00 0.00 0.00 1.82
2774 6695 7.128263 ACAGCTTAGGTTGGTATAGGGAAAATA 59.872 37.037 0.00 0.00 0.00 1.40
2775 6696 7.996644 CAGCTTAGGTTGGTATAGGGAAAATAA 59.003 37.037 0.00 0.00 0.00 1.40
2776 6697 8.218488 AGCTTAGGTTGGTATAGGGAAAATAAG 58.782 37.037 0.00 0.00 0.00 1.73
2777 6698 7.997223 GCTTAGGTTGGTATAGGGAAAATAAGT 59.003 37.037 0.00 0.00 0.00 2.24
2778 6699 9.557061 CTTAGGTTGGTATAGGGAAAATAAGTC 57.443 37.037 0.00 0.00 0.00 3.01
2779 6700 7.519347 AGGTTGGTATAGGGAAAATAAGTCA 57.481 36.000 0.00 0.00 0.00 3.41
2780 6701 7.574607 AGGTTGGTATAGGGAAAATAAGTCAG 58.425 38.462 0.00 0.00 0.00 3.51
2781 6702 6.262496 GGTTGGTATAGGGAAAATAAGTCAGC 59.738 42.308 0.00 0.00 0.00 4.26
2782 6703 5.937111 TGGTATAGGGAAAATAAGTCAGCC 58.063 41.667 0.00 0.00 0.00 4.85
2783 6704 5.670361 TGGTATAGGGAAAATAAGTCAGCCT 59.330 40.000 0.00 0.00 0.00 4.58
2784 6705 6.183361 TGGTATAGGGAAAATAAGTCAGCCTC 60.183 42.308 0.00 0.00 0.00 4.70
2785 6706 3.653835 AGGGAAAATAAGTCAGCCTCC 57.346 47.619 0.00 0.00 0.00 4.30
2786 6707 2.919602 AGGGAAAATAAGTCAGCCTCCA 59.080 45.455 0.00 0.00 0.00 3.86
2787 6708 3.529319 AGGGAAAATAAGTCAGCCTCCAT 59.471 43.478 0.00 0.00 0.00 3.41
2788 6709 3.633986 GGGAAAATAAGTCAGCCTCCATG 59.366 47.826 0.00 0.00 0.00 3.66
2789 6710 3.633986 GGAAAATAAGTCAGCCTCCATGG 59.366 47.826 4.97 4.97 39.35 3.66
2790 6711 4.273318 GAAAATAAGTCAGCCTCCATGGT 58.727 43.478 12.58 0.00 38.35 3.55
2791 6712 3.287867 AATAAGTCAGCCTCCATGGTG 57.712 47.619 12.58 9.53 38.35 4.17
2792 6713 0.911769 TAAGTCAGCCTCCATGGTGG 59.088 55.000 25.75 25.75 39.43 4.61
2793 6714 1.136329 AAGTCAGCCTCCATGGTGGT 61.136 55.000 29.03 16.77 39.03 4.16
2794 6715 1.078143 GTCAGCCTCCATGGTGGTC 60.078 63.158 29.03 21.76 39.03 4.02
2795 6716 2.124983 CAGCCTCCATGGTGGTCG 60.125 66.667 29.03 18.58 39.03 4.79
2796 6717 2.284625 AGCCTCCATGGTGGTCGA 60.285 61.111 29.03 1.52 39.03 4.20
2797 6718 1.918293 AGCCTCCATGGTGGTCGAA 60.918 57.895 29.03 0.77 39.03 3.71
2798 6719 1.224592 GCCTCCATGGTGGTCGAAT 59.775 57.895 29.03 0.00 39.03 3.34
2799 6720 0.394352 GCCTCCATGGTGGTCGAATT 60.394 55.000 29.03 0.00 39.03 2.17
2800 6721 1.955208 GCCTCCATGGTGGTCGAATTT 60.955 52.381 29.03 0.00 39.03 1.82
2801 6722 1.745087 CCTCCATGGTGGTCGAATTTG 59.255 52.381 22.53 0.00 39.03 2.32
2802 6723 2.617788 CCTCCATGGTGGTCGAATTTGA 60.618 50.000 22.53 0.00 39.03 2.69
2803 6724 3.081061 CTCCATGGTGGTCGAATTTGAA 58.919 45.455 12.58 0.00 39.03 2.69
2804 6725 3.491342 TCCATGGTGGTCGAATTTGAAA 58.509 40.909 12.58 0.00 39.03 2.69
2805 6726 4.085733 TCCATGGTGGTCGAATTTGAAAT 58.914 39.130 12.58 0.00 39.03 2.17
2806 6727 4.082300 TCCATGGTGGTCGAATTTGAAATG 60.082 41.667 12.58 0.00 39.03 2.32
2807 6728 4.082300 CCATGGTGGTCGAATTTGAAATGA 60.082 41.667 2.57 0.00 31.35 2.57
2808 6729 5.394443 CCATGGTGGTCGAATTTGAAATGAT 60.394 40.000 2.57 0.00 31.35 2.45
2809 6730 5.309323 TGGTGGTCGAATTTGAAATGATC 57.691 39.130 0.00 0.00 0.00 2.92
2810 6731 4.764308 TGGTGGTCGAATTTGAAATGATCA 59.236 37.500 0.00 0.00 35.85 2.92
2811 6732 5.242615 TGGTGGTCGAATTTGAAATGATCAA 59.757 36.000 0.00 0.00 46.22 2.57
2858 6779 9.959749 TGAAAGGATACAAGTGTGTAAATTTTC 57.040 29.630 0.00 0.00 43.41 2.29
2859 6780 9.959749 GAAAGGATACAAGTGTGTAAATTTTCA 57.040 29.630 0.00 0.00 43.41 2.69
2860 6781 9.965824 AAAGGATACAAGTGTGTAAATTTTCAG 57.034 29.630 0.00 0.00 43.41 3.02
2861 6782 8.110860 AGGATACAAGTGTGTAAATTTTCAGG 57.889 34.615 0.00 0.00 43.41 3.86
2862 6783 7.942341 AGGATACAAGTGTGTAAATTTTCAGGA 59.058 33.333 0.00 0.00 43.41 3.86
2863 6784 8.021396 GGATACAAGTGTGTAAATTTTCAGGAC 58.979 37.037 0.00 0.00 43.41 3.85
2864 6785 5.816919 ACAAGTGTGTAAATTTTCAGGACG 58.183 37.500 0.00 0.00 35.72 4.79
2865 6786 5.587043 ACAAGTGTGTAAATTTTCAGGACGA 59.413 36.000 0.00 0.00 35.72 4.20
2866 6787 6.094325 ACAAGTGTGTAAATTTTCAGGACGAA 59.906 34.615 0.00 0.00 35.72 3.85
2867 6788 6.687081 AGTGTGTAAATTTTCAGGACGAAA 57.313 33.333 0.00 0.00 41.95 3.46
2868 6789 7.272037 AGTGTGTAAATTTTCAGGACGAAAT 57.728 32.000 0.00 0.00 43.12 2.17
2869 6790 8.385898 AGTGTGTAAATTTTCAGGACGAAATA 57.614 30.769 0.00 0.00 43.12 1.40
2870 6791 8.287503 AGTGTGTAAATTTTCAGGACGAAATAC 58.712 33.333 0.00 0.00 43.12 1.89
2871 6792 7.267600 GTGTGTAAATTTTCAGGACGAAATACG 59.732 37.037 0.00 0.00 43.12 3.06
2872 6793 7.171167 TGTGTAAATTTTCAGGACGAAATACGA 59.829 33.333 0.00 0.00 43.12 3.43
2873 6794 7.686938 GTGTAAATTTTCAGGACGAAATACGAG 59.313 37.037 0.00 0.00 43.12 4.18
2874 6795 4.859629 ATTTTCAGGACGAAATACGAGC 57.140 40.909 0.00 0.00 43.12 5.03
2875 6796 3.587797 TTTCAGGACGAAATACGAGCT 57.412 42.857 0.00 0.00 45.77 4.09
2876 6797 2.561733 TCAGGACGAAATACGAGCTG 57.438 50.000 0.00 0.00 45.77 4.24
2877 6798 1.134367 TCAGGACGAAATACGAGCTGG 59.866 52.381 0.00 0.00 45.77 4.85
2878 6799 1.134367 CAGGACGAAATACGAGCTGGA 59.866 52.381 1.44 0.00 45.77 3.86
2879 6800 2.032620 AGGACGAAATACGAGCTGGAT 58.967 47.619 1.44 0.00 45.77 3.41
2880 6801 2.034812 AGGACGAAATACGAGCTGGATC 59.965 50.000 1.44 0.00 45.77 3.36
2881 6802 2.223735 GGACGAAATACGAGCTGGATCA 60.224 50.000 1.44 0.00 45.77 2.92
2882 6803 2.789893 GACGAAATACGAGCTGGATCAC 59.210 50.000 1.44 0.00 45.77 3.06
2883 6804 2.128035 CGAAATACGAGCTGGATCACC 58.872 52.381 1.44 0.00 45.77 4.02
2884 6805 2.128035 GAAATACGAGCTGGATCACCG 58.872 52.381 1.44 0.00 39.42 4.94
2885 6806 1.112113 AATACGAGCTGGATCACCGT 58.888 50.000 1.44 0.59 39.42 4.83
2886 6807 0.385751 ATACGAGCTGGATCACCGTG 59.614 55.000 1.44 0.00 39.42 4.94
2887 6808 2.279502 TACGAGCTGGATCACCGTGC 62.280 60.000 1.44 0.00 39.42 5.34
2888 6809 2.512515 GAGCTGGATCACCGTGCC 60.513 66.667 0.00 0.00 38.40 5.01
2889 6810 3.005539 AGCTGGATCACCGTGCCT 61.006 61.111 0.00 0.00 38.40 4.75
2890 6811 2.512515 GCTGGATCACCGTGCCTC 60.513 66.667 0.00 0.00 39.42 4.70
2891 6812 2.981302 CTGGATCACCGTGCCTCA 59.019 61.111 0.00 0.00 39.42 3.86
2892 6813 1.448540 CTGGATCACCGTGCCTCAC 60.449 63.158 0.00 0.00 39.42 3.51
2903 6824 2.900273 GCCTCACGTATGGCTGGA 59.100 61.111 19.77 0.00 45.26 3.86
2904 6825 1.227380 GCCTCACGTATGGCTGGAG 60.227 63.158 19.77 6.76 45.26 3.86
2905 6826 1.227380 CCTCACGTATGGCTGGAGC 60.227 63.158 0.00 0.00 41.14 4.70
2906 6827 1.680522 CCTCACGTATGGCTGGAGCT 61.681 60.000 0.00 0.00 41.70 4.09
2907 6828 0.176680 CTCACGTATGGCTGGAGCTT 59.823 55.000 0.00 0.00 41.70 3.74
2908 6829 0.108186 TCACGTATGGCTGGAGCTTG 60.108 55.000 0.00 0.00 41.70 4.01
2909 6830 1.091771 CACGTATGGCTGGAGCTTGG 61.092 60.000 0.00 0.00 41.70 3.61
2910 6831 1.264749 ACGTATGGCTGGAGCTTGGA 61.265 55.000 0.00 0.00 41.70 3.53
2911 6832 0.107703 CGTATGGCTGGAGCTTGGAA 60.108 55.000 0.00 0.00 41.70 3.53
2912 6833 1.673168 GTATGGCTGGAGCTTGGAAG 58.327 55.000 0.00 0.00 41.70 3.46
2913 6834 0.548031 TATGGCTGGAGCTTGGAAGG 59.452 55.000 0.00 0.00 41.70 3.46
2914 6835 1.210204 ATGGCTGGAGCTTGGAAGGA 61.210 55.000 0.00 0.00 41.70 3.36
2915 6836 1.210204 TGGCTGGAGCTTGGAAGGAT 61.210 55.000 0.00 0.00 41.70 3.24
2916 6837 0.839946 GGCTGGAGCTTGGAAGGATA 59.160 55.000 0.00 0.00 41.70 2.59
2917 6838 1.212935 GGCTGGAGCTTGGAAGGATAA 59.787 52.381 0.00 0.00 41.70 1.75
2918 6839 2.293170 GCTGGAGCTTGGAAGGATAAC 58.707 52.381 0.00 0.00 38.21 1.89
2919 6840 2.924421 CTGGAGCTTGGAAGGATAACC 58.076 52.381 0.00 0.00 0.00 2.85
2920 6841 2.239654 CTGGAGCTTGGAAGGATAACCA 59.760 50.000 0.00 0.00 38.94 3.67
2921 6842 2.852449 TGGAGCTTGGAAGGATAACCAT 59.148 45.455 0.00 0.00 38.94 3.55
2922 6843 3.217626 GGAGCTTGGAAGGATAACCATG 58.782 50.000 0.00 0.00 38.94 3.66
2924 6845 1.334869 GCTTGGAAGGATAACCATGCG 59.665 52.381 0.00 0.00 43.54 4.73
2925 6846 2.643551 CTTGGAAGGATAACCATGCGT 58.356 47.619 0.00 0.00 38.94 5.24
2926 6847 2.799126 TGGAAGGATAACCATGCGTT 57.201 45.000 5.16 5.16 38.94 4.84
2927 6848 3.080300 TGGAAGGATAACCATGCGTTT 57.920 42.857 5.12 0.00 38.94 3.60
2996 6917 6.660521 AGCATCTCAAATATGTGGAACTTCAA 59.339 34.615 0.00 0.00 38.04 2.69
3002 6923 6.657541 TCAAATATGTGGAACTTCAAGGGTAC 59.342 38.462 0.00 0.00 38.04 3.34
3027 6950 7.342799 ACCGTTATAAGTTTATGACACTAGGGA 59.657 37.037 0.00 0.00 31.32 4.20
3058 6981 3.495331 TGCAAGTTTTCTTATGGCTGGA 58.505 40.909 0.00 0.00 38.17 3.86
3097 7020 1.378531 TGCGAATGATGTAAGGTGGC 58.621 50.000 0.00 0.00 0.00 5.01
3146 7069 0.178767 TGAATGGAGGAGCGACATGG 59.821 55.000 0.00 0.00 0.00 3.66
3150 7073 1.068250 GGAGGAGCGACATGGCTAC 59.932 63.158 0.00 0.00 44.93 3.58
3160 7083 1.476891 GACATGGCTACTCTCCAACGA 59.523 52.381 0.00 0.00 37.13 3.85
3184 7107 1.325338 GTTGACAGTTACAACGTGCGT 59.675 47.619 0.00 0.00 38.23 5.24
3193 7116 0.522495 ACAACGTGCGTGAAGTTTGC 60.522 50.000 0.00 0.00 0.00 3.68
3203 7126 3.490526 GCGTGAAGTTTGCATTGTTTGAT 59.509 39.130 0.00 0.00 0.00 2.57
3218 7141 5.414789 TGTTTGATCTCGGGATTAGAACA 57.585 39.130 14.32 14.32 31.98 3.18
3221 7144 5.414789 TTGATCTCGGGATTAGAACAACA 57.585 39.130 0.00 0.00 32.71 3.33
3240 7163 4.928661 ACACAATCGAGTAAGCATCAAC 57.071 40.909 0.00 0.00 0.00 3.18
3243 7166 5.577164 ACACAATCGAGTAAGCATCAACTAC 59.423 40.000 0.00 0.00 0.00 2.73
3332 7255 2.926838 GACTGAATCTTTCTCGGTCAGC 59.073 50.000 6.87 0.00 45.03 4.26
3333 7256 1.923204 CTGAATCTTTCTCGGTCAGCG 59.077 52.381 0.00 0.00 30.20 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.567585 TGCTCAATCATCCACGTGAAAAA 59.432 39.130 19.30 0.00 0.00 1.94
11 12 2.696989 ATGCTCAATCATCCACGTGA 57.303 45.000 19.30 3.36 0.00 4.35
28 29 9.875691 ATGGTGTAGTGTATATAAGCACATATG 57.124 33.333 0.00 0.00 38.02 1.78
29 30 9.875691 CATGGTGTAGTGTATATAAGCACATAT 57.124 33.333 11.11 0.00 38.02 1.78
30 31 8.866093 ACATGGTGTAGTGTATATAAGCACATA 58.134 33.333 0.00 0.00 38.02 2.29
31 32 7.735917 ACATGGTGTAGTGTATATAAGCACAT 58.264 34.615 0.00 0.00 38.02 3.21
32 33 7.119709 ACATGGTGTAGTGTATATAAGCACA 57.880 36.000 0.00 0.00 38.02 4.57
35 36 9.706691 ACATAACATGGTGTAGTGTATATAAGC 57.293 33.333 0.00 0.00 29.94 3.09
37 38 9.902196 CGACATAACATGGTGTAGTGTATATAA 57.098 33.333 0.00 0.00 31.25 0.98
38 39 8.024865 GCGACATAACATGGTGTAGTGTATATA 58.975 37.037 0.00 0.00 31.25 0.86
39 40 6.866770 GCGACATAACATGGTGTAGTGTATAT 59.133 38.462 0.00 0.00 31.25 0.86
40 41 6.183360 TGCGACATAACATGGTGTAGTGTATA 60.183 38.462 0.00 0.00 31.25 1.47
41 42 5.047847 GCGACATAACATGGTGTAGTGTAT 58.952 41.667 0.00 0.00 31.25 2.29
42 43 4.082136 TGCGACATAACATGGTGTAGTGTA 60.082 41.667 0.00 0.00 31.25 2.90
43 44 3.259064 GCGACATAACATGGTGTAGTGT 58.741 45.455 0.00 0.00 32.95 3.55
44 45 3.258228 TGCGACATAACATGGTGTAGTG 58.742 45.455 0.00 0.00 33.60 2.74
46 47 4.119136 TGATGCGACATAACATGGTGTAG 58.881 43.478 0.00 0.00 33.60 2.74
47 48 4.130286 TGATGCGACATAACATGGTGTA 57.870 40.909 0.00 0.00 33.60 2.90
48 49 2.984562 TGATGCGACATAACATGGTGT 58.015 42.857 0.00 0.00 33.60 4.16
49 50 5.391203 CCATATGATGCGACATAACATGGTG 60.391 44.000 3.65 0.00 36.53 4.17
50 51 4.696877 CCATATGATGCGACATAACATGGT 59.303 41.667 3.65 0.00 36.53 3.55
51 52 4.696877 ACCATATGATGCGACATAACATGG 59.303 41.667 3.65 11.00 36.90 3.66
52 53 5.409214 TGACCATATGATGCGACATAACATG 59.591 40.000 3.65 0.00 36.53 3.21
55 56 4.389992 CCTGACCATATGATGCGACATAAC 59.610 45.833 3.65 2.01 36.53 1.89
56 57 4.040339 ACCTGACCATATGATGCGACATAA 59.960 41.667 3.65 0.00 36.53 1.90
57 58 3.578282 ACCTGACCATATGATGCGACATA 59.422 43.478 3.65 5.39 37.20 2.29
58 59 2.369860 ACCTGACCATATGATGCGACAT 59.630 45.455 3.65 1.41 0.00 3.06
61 62 2.224281 GGAACCTGACCATATGATGCGA 60.224 50.000 3.65 0.00 0.00 5.10
62 63 2.146342 GGAACCTGACCATATGATGCG 58.854 52.381 3.65 0.00 0.00 4.73
63 64 3.144506 CTGGAACCTGACCATATGATGC 58.855 50.000 3.65 0.00 36.79 3.91
64 65 3.144506 GCTGGAACCTGACCATATGATG 58.855 50.000 3.65 0.00 36.79 3.07
65 66 2.779430 TGCTGGAACCTGACCATATGAT 59.221 45.455 3.65 0.00 36.79 2.45
66 67 2.171237 CTGCTGGAACCTGACCATATGA 59.829 50.000 3.65 0.00 36.79 2.15
67 68 2.569059 CTGCTGGAACCTGACCATATG 58.431 52.381 0.00 0.00 36.79 1.78
68 69 1.133976 GCTGCTGGAACCTGACCATAT 60.134 52.381 2.01 0.00 36.79 1.78
69 70 0.253044 GCTGCTGGAACCTGACCATA 59.747 55.000 2.01 0.00 36.79 2.74
70 71 1.001641 GCTGCTGGAACCTGACCAT 60.002 57.895 2.01 0.00 36.79 3.55
72 73 2.360475 GGCTGCTGGAACCTGACC 60.360 66.667 0.00 0.00 0.00 4.02
74 75 4.020617 CCGGCTGCTGGAACCTGA 62.021 66.667 23.22 0.00 29.82 3.86
75 76 4.335647 ACCGGCTGCTGGAACCTG 62.336 66.667 33.15 6.56 33.36 4.00
76 77 4.021925 GACCGGCTGCTGGAACCT 62.022 66.667 33.15 11.49 33.36 3.50
78 79 2.743928 CTGACCGGCTGCTGGAAC 60.744 66.667 33.15 23.96 33.36 3.62
79 80 4.704833 GCTGACCGGCTGCTGGAA 62.705 66.667 33.15 19.03 38.32 3.53
82 83 3.300934 TACTGCTGACCGGCTGCTG 62.301 63.158 22.23 22.23 43.04 4.41
84 85 2.303549 ATCTACTGCTGACCGGCTGC 62.304 60.000 16.79 16.79 41.36 5.25
86 87 0.396417 AGATCTACTGCTGACCGGCT 60.396 55.000 0.00 0.00 0.00 5.52
87 88 0.031449 GAGATCTACTGCTGACCGGC 59.969 60.000 0.00 0.00 0.00 6.13
88 89 1.393603 TGAGATCTACTGCTGACCGG 58.606 55.000 0.00 0.00 0.00 5.28
89 90 3.724508 AATGAGATCTACTGCTGACCG 57.275 47.619 0.00 0.00 0.00 4.79
90 91 4.764172 ACAAATGAGATCTACTGCTGACC 58.236 43.478 0.00 0.00 0.00 4.02
91 92 5.871524 TCAACAAATGAGATCTACTGCTGAC 59.128 40.000 0.00 0.00 33.04 3.51
92 93 6.041423 TCAACAAATGAGATCTACTGCTGA 57.959 37.500 0.00 0.00 33.04 4.26
95 96 5.238214 GGGATCAACAAATGAGATCTACTGC 59.762 44.000 0.00 0.00 42.53 4.40
98 99 7.731054 AGTAGGGATCAACAAATGAGATCTAC 58.269 38.462 0.00 11.97 42.53 2.59
99 100 7.255625 CGAGTAGGGATCAACAAATGAGATCTA 60.256 40.741 0.00 0.00 42.53 1.98
100 101 6.462207 CGAGTAGGGATCAACAAATGAGATCT 60.462 42.308 0.00 0.00 42.53 2.75
101 102 5.694006 CGAGTAGGGATCAACAAATGAGATC 59.306 44.000 0.00 10.17 42.53 2.75
102 103 5.363868 TCGAGTAGGGATCAACAAATGAGAT 59.636 40.000 0.00 0.00 42.53 2.75
104 105 5.011090 TCGAGTAGGGATCAACAAATGAG 57.989 43.478 0.00 0.00 42.53 2.90
106 107 4.445718 CGATCGAGTAGGGATCAACAAATG 59.554 45.833 10.26 0.00 40.21 2.32
107 108 4.341235 TCGATCGAGTAGGGATCAACAAAT 59.659 41.667 15.15 0.00 40.21 2.32
110 111 2.617308 GTCGATCGAGTAGGGATCAACA 59.383 50.000 20.09 0.00 40.21 3.33
111 112 2.030981 GGTCGATCGAGTAGGGATCAAC 60.031 54.545 20.09 2.12 40.21 3.18
112 113 2.228059 GGTCGATCGAGTAGGGATCAA 58.772 52.381 20.09 0.00 40.21 2.57
113 114 1.142262 TGGTCGATCGAGTAGGGATCA 59.858 52.381 20.09 0.00 40.21 2.92
116 117 2.359981 ATTGGTCGATCGAGTAGGGA 57.640 50.000 20.09 2.05 0.00 4.20
117 118 3.454371 AAATTGGTCGATCGAGTAGGG 57.546 47.619 20.09 0.00 0.00 3.53
118 119 4.181578 ACAAAATTGGTCGATCGAGTAGG 58.818 43.478 20.09 5.61 0.00 3.18
119 120 5.779806 AACAAAATTGGTCGATCGAGTAG 57.220 39.130 20.09 5.47 0.00 2.57
120 121 5.467399 ACAAACAAAATTGGTCGATCGAGTA 59.533 36.000 20.09 7.65 34.56 2.59
122 123 4.783242 ACAAACAAAATTGGTCGATCGAG 58.217 39.130 20.09 6.62 34.56 4.04
123 124 4.513692 AGACAAACAAAATTGGTCGATCGA 59.486 37.500 15.15 15.15 34.56 3.59
124 125 4.783242 AGACAAACAAAATTGGTCGATCG 58.217 39.130 9.36 9.36 34.56 3.69
125 126 6.360681 CAGAAGACAAACAAAATTGGTCGATC 59.639 38.462 0.00 0.00 34.56 3.69
126 127 6.208644 CAGAAGACAAACAAAATTGGTCGAT 58.791 36.000 0.00 0.00 34.56 3.59
127 128 5.577835 CAGAAGACAAACAAAATTGGTCGA 58.422 37.500 0.00 0.00 34.56 4.20
128 129 4.207019 GCAGAAGACAAACAAAATTGGTCG 59.793 41.667 0.00 0.00 34.56 4.79
129 130 5.351458 AGCAGAAGACAAACAAAATTGGTC 58.649 37.500 0.00 0.00 34.56 4.02
130 131 5.343307 AGCAGAAGACAAACAAAATTGGT 57.657 34.783 0.00 0.00 34.56 3.67
132 133 6.211515 AGCTAGCAGAAGACAAACAAAATTG 58.788 36.000 18.83 0.00 36.37 2.32
133 134 6.396829 AGCTAGCAGAAGACAAACAAAATT 57.603 33.333 18.83 0.00 0.00 1.82
134 135 6.486657 TGTAGCTAGCAGAAGACAAACAAAAT 59.513 34.615 18.83 0.00 0.00 1.82
135 136 5.820423 TGTAGCTAGCAGAAGACAAACAAAA 59.180 36.000 18.83 0.00 0.00 2.44
136 137 5.236478 GTGTAGCTAGCAGAAGACAAACAAA 59.764 40.000 18.83 0.00 0.00 2.83
137 138 4.750098 GTGTAGCTAGCAGAAGACAAACAA 59.250 41.667 18.83 0.00 0.00 2.83
138 139 4.307432 GTGTAGCTAGCAGAAGACAAACA 58.693 43.478 18.83 3.96 0.00 2.83
139 140 3.680458 GGTGTAGCTAGCAGAAGACAAAC 59.320 47.826 18.83 5.88 0.00 2.93
141 142 2.233922 GGGTGTAGCTAGCAGAAGACAA 59.766 50.000 18.83 0.00 0.00 3.18
142 143 1.825474 GGGTGTAGCTAGCAGAAGACA 59.175 52.381 18.83 9.64 0.00 3.41
143 144 2.104170 AGGGTGTAGCTAGCAGAAGAC 58.896 52.381 18.83 10.19 0.00 3.01
147 148 2.656002 CTGTAGGGTGTAGCTAGCAGA 58.344 52.381 18.83 0.56 0.00 4.26
148 149 1.067821 GCTGTAGGGTGTAGCTAGCAG 59.932 57.143 18.83 2.08 34.70 4.24
149 150 1.112113 GCTGTAGGGTGTAGCTAGCA 58.888 55.000 18.83 0.00 34.70 3.49
150 151 0.389757 GGCTGTAGGGTGTAGCTAGC 59.610 60.000 6.62 6.62 37.58 3.42
151 152 0.669077 CGGCTGTAGGGTGTAGCTAG 59.331 60.000 0.00 0.00 37.58 3.42
154 155 1.437986 CTCGGCTGTAGGGTGTAGC 59.562 63.158 0.00 0.00 36.74 3.58
155 156 1.038130 AGCTCGGCTGTAGGGTGTAG 61.038 60.000 0.00 0.00 37.57 2.74
157 158 2.283966 AGCTCGGCTGTAGGGTGT 60.284 61.111 0.00 0.00 37.57 4.16
169 170 1.299014 GAGACGATCTGCCAGCTCG 60.299 63.158 15.74 15.74 39.49 5.03
170 171 0.527385 GTGAGACGATCTGCCAGCTC 60.527 60.000 0.00 0.00 0.00 4.09
171 172 0.969917 AGTGAGACGATCTGCCAGCT 60.970 55.000 0.00 0.00 0.00 4.24
172 173 0.805322 CAGTGAGACGATCTGCCAGC 60.805 60.000 0.00 0.00 0.00 4.85
173 174 0.813821 TCAGTGAGACGATCTGCCAG 59.186 55.000 0.00 0.00 0.00 4.85
174 175 1.406898 GATCAGTGAGACGATCTGCCA 59.593 52.381 0.00 0.00 36.04 4.92
177 4018 3.311048 TCTTCGATCAGTGAGACGATCTG 59.689 47.826 20.28 14.95 36.66 2.90
183 4024 3.796178 GCTTGATCTTCGATCAGTGAGAC 59.204 47.826 0.00 0.00 0.00 3.36
189 4030 2.208431 GGTGGCTTGATCTTCGATCAG 58.792 52.381 6.64 3.73 0.00 2.90
190 4031 1.554617 TGGTGGCTTGATCTTCGATCA 59.445 47.619 2.59 2.59 0.00 2.92
210 4051 0.688487 TTTACCTGCCGTGGTTAGCT 59.312 50.000 0.00 0.00 41.22 3.32
215 4056 2.039348 ACTTGTATTTACCTGCCGTGGT 59.961 45.455 0.00 0.00 43.66 4.16
216 4057 2.706890 ACTTGTATTTACCTGCCGTGG 58.293 47.619 0.00 0.00 0.00 4.94
217 4058 7.358931 CGATATAACTTGTATTTACCTGCCGTG 60.359 40.741 0.00 0.00 0.00 4.94
218 4059 6.643770 CGATATAACTTGTATTTACCTGCCGT 59.356 38.462 0.00 0.00 0.00 5.68
220 4061 7.148853 CGACGATATAACTTGTATTTACCTGCC 60.149 40.741 0.00 0.00 0.00 4.85
221 4062 7.618751 GCGACGATATAACTTGTATTTACCTGC 60.619 40.741 0.00 0.00 0.00 4.85
222 4063 7.380333 TGCGACGATATAACTTGTATTTACCTG 59.620 37.037 0.00 0.00 0.00 4.00
223 4064 7.428020 TGCGACGATATAACTTGTATTTACCT 58.572 34.615 0.00 0.00 0.00 3.08
224 4065 7.627585 TGCGACGATATAACTTGTATTTACC 57.372 36.000 0.00 0.00 0.00 2.85
225 4066 9.723299 GAATGCGACGATATAACTTGTATTTAC 57.277 33.333 0.00 0.00 0.00 2.01
226 4067 9.687210 AGAATGCGACGATATAACTTGTATTTA 57.313 29.630 0.00 0.00 0.00 1.40
227 4068 8.589335 AGAATGCGACGATATAACTTGTATTT 57.411 30.769 0.00 0.00 0.00 1.40
228 4069 8.589335 AAGAATGCGACGATATAACTTGTATT 57.411 30.769 0.00 0.00 0.00 1.89
229 4070 9.856488 ATAAGAATGCGACGATATAACTTGTAT 57.144 29.630 0.00 0.00 0.00 2.29
263 4104 6.072112 TCCAGAGCTTTGTCACAATTAAAC 57.928 37.500 3.25 0.00 0.00 2.01
280 4121 4.681942 CGACTTTTGAGTACACTTCCAGAG 59.318 45.833 0.00 0.00 0.00 3.35
290 4131 2.644078 ACGACGACGACTTTTGAGTAC 58.356 47.619 15.32 0.00 42.66 2.73
317 4158 1.611491 GTTTTCACCGCTGGAAATGGA 59.389 47.619 1.50 0.00 34.50 3.41
336 4177 2.108425 TCTAGTCCTCCTGCCATATCGT 59.892 50.000 0.00 0.00 0.00 3.73
337 4178 2.796557 TCTAGTCCTCCTGCCATATCG 58.203 52.381 0.00 0.00 0.00 2.92
338 4179 4.348486 TGATCTAGTCCTCCTGCCATATC 58.652 47.826 0.00 0.00 0.00 1.63
339 4180 4.352009 CTGATCTAGTCCTCCTGCCATAT 58.648 47.826 0.00 0.00 0.00 1.78
340 4181 3.772387 CTGATCTAGTCCTCCTGCCATA 58.228 50.000 0.00 0.00 0.00 2.74
378 4222 0.543749 CACTTGGATCCCCCACTCTC 59.456 60.000 9.90 0.00 46.62 3.20
427 4271 1.513158 CGCCGTGATGAGGAGAGTT 59.487 57.895 0.00 0.00 0.00 3.01
429 4273 2.121538 TCCGCCGTGATGAGGAGAG 61.122 63.158 0.00 0.00 0.00 3.20
460 4304 0.389426 TTAGCACGCCGGAGTCTTTC 60.389 55.000 8.30 0.00 0.00 2.62
577 4436 4.021925 GGAGCCCAGAACGCCACT 62.022 66.667 0.00 0.00 0.00 4.00
605 4464 2.521465 CTGGCCACCAAGGTGCAA 60.521 61.111 13.75 2.59 44.16 4.08
890 4749 7.973048 AGTTCTGGTATAAGTGAGGTATTCA 57.027 36.000 0.00 0.00 0.00 2.57
894 4753 7.093465 CCTCAAAGTTCTGGTATAAGTGAGGTA 60.093 40.741 7.56 0.00 42.98 3.08
916 4775 3.782523 AGCTAGAAATTGTCCATCCCTCA 59.217 43.478 0.00 0.00 0.00 3.86
919 4778 4.156455 TGAGCTAGAAATTGTCCATCCC 57.844 45.455 0.00 0.00 0.00 3.85
921 4780 6.054295 AGTCATGAGCTAGAAATTGTCCATC 58.946 40.000 0.00 0.00 0.00 3.51
922 4781 5.999044 AGTCATGAGCTAGAAATTGTCCAT 58.001 37.500 0.00 0.00 0.00 3.41
923 4782 5.426689 AGTCATGAGCTAGAAATTGTCCA 57.573 39.130 0.00 0.00 0.00 4.02
924 4783 5.645497 ACAAGTCATGAGCTAGAAATTGTCC 59.355 40.000 0.00 0.00 0.00 4.02
1105 4966 2.808933 CGGATGCAATACCCGTACCAAT 60.809 50.000 10.70 0.00 38.55 3.16
1216 5080 5.227569 TCCAGAGAGCAAAACATAAGTGA 57.772 39.130 0.00 0.00 0.00 3.41
1297 5161 1.963855 CGGATGCGGGTGAAACACA 60.964 57.895 0.00 0.00 43.96 3.72
1318 5182 3.330701 AGGAGGCATACAACAAGGAAGAA 59.669 43.478 0.00 0.00 0.00 2.52
1370 5234 4.018050 AGCTCCCCAGATTGAAATACAAGT 60.018 41.667 0.00 0.00 42.02 3.16
1500 5370 0.590732 CATCTCGCGATTTTGCTGCC 60.591 55.000 10.36 0.00 0.00 4.85
1523 5393 0.787084 TCCACCAGTCCTCTCTTCCT 59.213 55.000 0.00 0.00 0.00 3.36
1564 5434 2.473891 TAGCGAGACGGGGACAGACA 62.474 60.000 0.00 0.00 0.00 3.41
1944 5820 0.390603 TCCACGGCCGAGTTGTATTG 60.391 55.000 35.90 17.04 0.00 1.90
1951 5833 0.462047 GATCAAATCCACGGCCGAGT 60.462 55.000 35.90 7.50 0.00 4.18
2202 6111 3.925630 AATCTGGCCTGCACCGGTG 62.926 63.158 30.66 30.66 37.37 4.94
2301 6210 4.271049 CGCTCTTCTTTGTTGAACTTCAGA 59.729 41.667 0.00 0.00 0.00 3.27
2324 6233 1.225704 CTCCCCAACTCAGCATCCC 59.774 63.158 0.00 0.00 0.00 3.85
2480 6392 2.561373 GGAAAGCAAAGCCCGACG 59.439 61.111 0.00 0.00 0.00 5.12
2537 6449 2.173569 GGGAGCAAGAATACCTGGTGAT 59.826 50.000 10.23 0.00 0.00 3.06
2543 6455 0.831307 GACGGGGAGCAAGAATACCT 59.169 55.000 0.00 0.00 0.00 3.08
2547 6459 0.909610 TGAGGACGGGGAGCAAGAAT 60.910 55.000 0.00 0.00 0.00 2.40
2573 6489 0.176680 ACTCAGATACAAGCTGCCGG 59.823 55.000 0.00 0.00 33.45 6.13
2642 6558 9.959721 ACACAAGTGGTTAAGATTAGTGAATAT 57.040 29.630 5.08 0.00 34.19 1.28
2643 6559 9.214957 CACACAAGTGGTTAAGATTAGTGAATA 57.785 33.333 5.08 0.00 42.13 1.75
2690 6609 0.173708 AGTACTGCTAGCAAGACCGC 59.826 55.000 19.86 6.12 0.00 5.68
2749 6670 5.367945 TTTCCCTATACCAACCTAAGCTG 57.632 43.478 0.00 0.00 0.00 4.24
2752 6673 9.557061 GACTTATTTTCCCTATACCAACCTAAG 57.443 37.037 0.00 0.00 0.00 2.18
2757 6678 6.262496 GGCTGACTTATTTTCCCTATACCAAC 59.738 42.308 0.00 0.00 0.00 3.77
2761 6682 6.183361 TGGAGGCTGACTTATTTTCCCTATAC 60.183 42.308 0.00 0.00 0.00 1.47
2765 6686 2.919602 TGGAGGCTGACTTATTTTCCCT 59.080 45.455 0.00 0.00 0.00 4.20
2769 6690 4.019174 CACCATGGAGGCTGACTTATTTT 58.981 43.478 21.47 0.00 43.14 1.82
2773 6694 0.911769 CCACCATGGAGGCTGACTTA 59.088 55.000 21.47 0.00 40.96 2.24
2774 6695 1.136329 ACCACCATGGAGGCTGACTT 61.136 55.000 26.47 4.54 40.96 3.01
2775 6696 1.539869 ACCACCATGGAGGCTGACT 60.540 57.895 26.47 5.29 40.96 3.41
2776 6697 1.078143 GACCACCATGGAGGCTGAC 60.078 63.158 26.47 12.60 40.96 3.51
2777 6698 2.659063 CGACCACCATGGAGGCTGA 61.659 63.158 26.47 0.00 40.96 4.26
2778 6699 2.124983 CGACCACCATGGAGGCTG 60.125 66.667 26.47 15.81 40.96 4.85
2779 6700 1.274703 ATTCGACCACCATGGAGGCT 61.275 55.000 26.47 14.47 40.96 4.58
2780 6701 0.394352 AATTCGACCACCATGGAGGC 60.394 55.000 26.47 17.86 40.96 4.70
2781 6702 1.745087 CAAATTCGACCACCATGGAGG 59.255 52.381 25.14 25.14 40.96 4.30
2782 6703 2.710377 TCAAATTCGACCACCATGGAG 58.290 47.619 21.47 11.19 40.96 3.86
2783 6704 2.869101 TCAAATTCGACCACCATGGA 57.131 45.000 21.47 0.00 40.96 3.41
2784 6705 3.932545 TTTCAAATTCGACCACCATGG 57.067 42.857 11.19 11.19 45.02 3.66
2785 6706 5.058149 TCATTTCAAATTCGACCACCATG 57.942 39.130 0.00 0.00 0.00 3.66
2786 6707 5.418524 TGATCATTTCAAATTCGACCACCAT 59.581 36.000 0.00 0.00 0.00 3.55
2787 6708 4.764308 TGATCATTTCAAATTCGACCACCA 59.236 37.500 0.00 0.00 0.00 4.17
2788 6709 5.309323 TGATCATTTCAAATTCGACCACC 57.691 39.130 0.00 0.00 0.00 4.61
2832 6753 9.959749 GAAAATTTACACACTTGTATCCTTTCA 57.040 29.630 0.00 0.00 38.05 2.69
2833 6754 9.959749 TGAAAATTTACACACTTGTATCCTTTC 57.040 29.630 0.00 0.00 38.05 2.62
2834 6755 9.965824 CTGAAAATTTACACACTTGTATCCTTT 57.034 29.630 0.00 0.00 38.05 3.11
2835 6756 8.576442 CCTGAAAATTTACACACTTGTATCCTT 58.424 33.333 0.00 0.00 38.05 3.36
2836 6757 7.942341 TCCTGAAAATTTACACACTTGTATCCT 59.058 33.333 0.00 0.00 38.05 3.24
2837 6758 8.021396 GTCCTGAAAATTTACACACTTGTATCC 58.979 37.037 0.00 0.00 38.05 2.59
2838 6759 7.744715 CGTCCTGAAAATTTACACACTTGTATC 59.255 37.037 0.00 0.00 38.05 2.24
2839 6760 7.442969 TCGTCCTGAAAATTTACACACTTGTAT 59.557 33.333 0.00 0.00 38.05 2.29
2840 6761 6.762187 TCGTCCTGAAAATTTACACACTTGTA 59.238 34.615 0.00 0.00 37.15 2.41
2841 6762 5.587043 TCGTCCTGAAAATTTACACACTTGT 59.413 36.000 0.00 0.00 40.02 3.16
2842 6763 6.055231 TCGTCCTGAAAATTTACACACTTG 57.945 37.500 0.00 0.00 0.00 3.16
2843 6764 6.687081 TTCGTCCTGAAAATTTACACACTT 57.313 33.333 0.00 0.00 32.37 3.16
2844 6765 6.687081 TTTCGTCCTGAAAATTTACACACT 57.313 33.333 0.00 0.00 43.46 3.55
2856 6777 2.416836 CCAGCTCGTATTTCGTCCTGAA 60.417 50.000 0.00 0.00 39.22 3.02
2857 6778 1.134367 CCAGCTCGTATTTCGTCCTGA 59.866 52.381 0.00 0.00 39.22 3.86
2858 6779 1.134367 TCCAGCTCGTATTTCGTCCTG 59.866 52.381 0.00 0.00 40.80 3.86
2859 6780 1.471119 TCCAGCTCGTATTTCGTCCT 58.529 50.000 0.00 0.00 40.80 3.85
2860 6781 2.223735 TGATCCAGCTCGTATTTCGTCC 60.224 50.000 0.00 0.00 40.80 4.79
2861 6782 2.789893 GTGATCCAGCTCGTATTTCGTC 59.210 50.000 0.00 0.00 40.80 4.20
2862 6783 2.481449 GGTGATCCAGCTCGTATTTCGT 60.481 50.000 0.00 0.00 40.80 3.85
2863 6784 2.128035 GGTGATCCAGCTCGTATTTCG 58.872 52.381 0.00 0.00 41.41 3.46
2864 6785 2.128035 CGGTGATCCAGCTCGTATTTC 58.872 52.381 0.00 0.00 0.00 2.17
2865 6786 1.480954 ACGGTGATCCAGCTCGTATTT 59.519 47.619 0.00 0.00 32.03 1.40
2866 6787 1.112113 ACGGTGATCCAGCTCGTATT 58.888 50.000 0.00 0.00 32.03 1.89
2867 6788 0.385751 CACGGTGATCCAGCTCGTAT 59.614 55.000 0.74 0.00 32.56 3.06
2868 6789 1.807226 CACGGTGATCCAGCTCGTA 59.193 57.895 0.74 0.00 32.56 3.43
2869 6790 2.573869 CACGGTGATCCAGCTCGT 59.426 61.111 0.74 0.00 34.19 4.18
2870 6791 2.887568 GCACGGTGATCCAGCTCG 60.888 66.667 13.29 0.00 33.46 5.03
2871 6792 2.512515 GGCACGGTGATCCAGCTC 60.513 66.667 13.29 0.00 35.58 4.09
2872 6793 3.005539 AGGCACGGTGATCCAGCT 61.006 61.111 13.29 0.00 35.58 4.24
2873 6794 2.512515 GAGGCACGGTGATCCAGC 60.513 66.667 13.29 0.00 34.84 4.85
2874 6795 1.448540 GTGAGGCACGGTGATCCAG 60.449 63.158 13.29 0.00 0.00 3.86
2875 6796 2.662596 GTGAGGCACGGTGATCCA 59.337 61.111 13.29 2.57 0.00 3.41
2887 6808 1.227380 GCTCCAGCCATACGTGAGG 60.227 63.158 0.00 0.04 34.31 3.86
2888 6809 0.176680 AAGCTCCAGCCATACGTGAG 59.823 55.000 0.00 0.00 43.38 3.51
2889 6810 0.108186 CAAGCTCCAGCCATACGTGA 60.108 55.000 0.00 0.00 43.38 4.35
2890 6811 1.091771 CCAAGCTCCAGCCATACGTG 61.092 60.000 0.00 0.00 43.38 4.49
2891 6812 1.221840 CCAAGCTCCAGCCATACGT 59.778 57.895 0.00 0.00 43.38 3.57
2892 6813 0.107703 TTCCAAGCTCCAGCCATACG 60.108 55.000 0.00 0.00 43.38 3.06
2893 6814 1.673168 CTTCCAAGCTCCAGCCATAC 58.327 55.000 0.00 0.00 43.38 2.39
2894 6815 0.548031 CCTTCCAAGCTCCAGCCATA 59.452 55.000 0.00 0.00 43.38 2.74
2895 6816 1.210204 TCCTTCCAAGCTCCAGCCAT 61.210 55.000 0.00 0.00 43.38 4.40
2896 6817 1.210204 ATCCTTCCAAGCTCCAGCCA 61.210 55.000 0.00 0.00 43.38 4.75
2897 6818 0.839946 TATCCTTCCAAGCTCCAGCC 59.160 55.000 0.00 0.00 43.38 4.85
2898 6819 2.293170 GTTATCCTTCCAAGCTCCAGC 58.707 52.381 0.00 0.00 42.49 4.85
2899 6820 2.239654 TGGTTATCCTTCCAAGCTCCAG 59.760 50.000 0.00 0.00 34.23 3.86
2900 6821 2.274542 TGGTTATCCTTCCAAGCTCCA 58.725 47.619 0.00 0.00 34.23 3.86
2901 6822 3.217626 CATGGTTATCCTTCCAAGCTCC 58.782 50.000 0.00 0.00 37.27 4.70
2902 6823 2.620585 GCATGGTTATCCTTCCAAGCTC 59.379 50.000 0.00 0.00 42.67 4.09
2903 6824 2.659428 GCATGGTTATCCTTCCAAGCT 58.341 47.619 0.00 0.00 42.67 3.74
2904 6825 1.334869 CGCATGGTTATCCTTCCAAGC 59.665 52.381 0.00 0.00 42.58 4.01
2905 6826 2.643551 ACGCATGGTTATCCTTCCAAG 58.356 47.619 0.00 0.00 37.27 3.61
2906 6827 2.799126 ACGCATGGTTATCCTTCCAA 57.201 45.000 0.00 0.00 37.27 3.53
2907 6828 2.752354 CAAACGCATGGTTATCCTTCCA 59.248 45.455 0.00 0.00 38.08 3.53
2908 6829 2.099098 CCAAACGCATGGTTATCCTTCC 59.901 50.000 0.00 0.00 38.08 3.46
2909 6830 3.013921 TCCAAACGCATGGTTATCCTTC 58.986 45.455 6.93 0.00 41.46 3.46
2910 6831 2.752903 GTCCAAACGCATGGTTATCCTT 59.247 45.455 6.93 0.00 41.46 3.36
2911 6832 2.365582 GTCCAAACGCATGGTTATCCT 58.634 47.619 6.93 0.00 41.46 3.24
2912 6833 1.063469 CGTCCAAACGCATGGTTATCC 59.937 52.381 6.93 0.00 42.82 2.59
2913 6834 2.452006 CGTCCAAACGCATGGTTATC 57.548 50.000 6.93 0.00 42.82 1.75
2924 6845 2.725641 GGTTGCCACCGTCCAAAC 59.274 61.111 0.00 0.00 31.60 2.93
2938 6859 7.934120 GGCAGATAATAGTATCAACTTCTGGTT 59.066 37.037 12.40 0.00 37.35 3.67
2996 6917 7.124750 AGTGTCATAAACTTATAACGGTACCCT 59.875 37.037 6.25 0.00 0.00 4.34
3002 6923 7.719483 TCCCTAGTGTCATAAACTTATAACGG 58.281 38.462 0.00 0.00 0.00 4.44
3007 6928 9.268282 TCTTCTTCCCTAGTGTCATAAACTTAT 57.732 33.333 0.00 0.00 0.00 1.73
3017 6938 5.003804 TGCAAATTCTTCTTCCCTAGTGTC 58.996 41.667 0.00 0.00 0.00 3.67
3027 6950 9.264719 CCATAAGAAAACTTGCAAATTCTTCTT 57.735 29.630 25.58 23.76 41.15 2.52
3030 6953 7.172019 CAGCCATAAGAAAACTTGCAAATTCTT 59.828 33.333 25.33 25.33 42.82 2.52
3058 6981 1.075659 GGCCCTGAGGACTTTTGCT 59.924 57.895 0.00 0.00 38.67 3.91
3160 7083 3.308866 GCACGTTGTAACTGTCAACTTCT 59.691 43.478 9.71 0.00 41.76 2.85
3179 7102 1.838913 ACAATGCAAACTTCACGCAC 58.161 45.000 0.00 0.00 38.73 5.34
3184 7107 5.214417 CGAGATCAAACAATGCAAACTTCA 58.786 37.500 0.00 0.00 0.00 3.02
3193 7116 6.316140 TGTTCTAATCCCGAGATCAAACAATG 59.684 38.462 0.00 0.00 30.97 2.82
3203 7126 4.610605 TTGTGTTGTTCTAATCCCGAGA 57.389 40.909 0.00 0.00 0.00 4.04
3218 7141 4.997395 AGTTGATGCTTACTCGATTGTGTT 59.003 37.500 0.00 0.00 0.00 3.32
3221 7144 5.967088 AGTAGTTGATGCTTACTCGATTGT 58.033 37.500 0.00 0.00 0.00 2.71
3240 7163 2.743636 TCTCCCGTGAAGCAAAGTAG 57.256 50.000 0.00 0.00 0.00 2.57
3243 7166 2.099141 TCATCTCCCGTGAAGCAAAG 57.901 50.000 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.