Multiple sequence alignment - TraesCS2A01G077300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G077300 chr2A 100.000 4881 0 0 1 4881 35405489 35400609 0.000000e+00 9014
1 TraesCS2A01G077300 chrUn 83.102 4184 592 89 2 4137 76371304 76375420 0.000000e+00 3703
2 TraesCS2A01G077300 chrUn 82.510 2287 330 61 1890 4137 345103607 345101352 0.000000e+00 1943
3 TraesCS2A01G077300 chrUn 83.914 1896 257 33 2 1887 355649971 355651828 0.000000e+00 1768
4 TraesCS2A01G077300 chrUn 90.067 594 59 0 2 595 343604193 343603600 0.000000e+00 771
5 TraesCS2A01G077300 chrUn 90.067 594 59 0 2 595 343660538 343659945 0.000000e+00 771
6 TraesCS2A01G077300 chr1A 79.241 4244 729 119 690 4864 563318819 563322979 0.000000e+00 2817
7 TraesCS2A01G077300 chr1A 89.608 587 61 0 15 601 563318127 563318713 0.000000e+00 747
8 TraesCS2A01G077300 chr1A 91.623 191 16 0 2 192 289024298 289024108 1.040000e-66 265
9 TraesCS2A01G077300 chr1A 91.534 189 16 0 2 190 294716862 294716674 1.350000e-65 261
10 TraesCS2A01G077300 chr3B 84.017 2853 399 47 188 3016 622019928 622022747 0.000000e+00 2689
11 TraesCS2A01G077300 chr3B 78.813 1803 315 62 3076 4849 622023173 622024937 0.000000e+00 1151
12 TraesCS2A01G077300 chr3B 78.112 233 41 9 4561 4790 389071279 389071504 6.590000e-29 139
13 TraesCS2A01G077300 chr6B 81.536 1354 205 42 2804 4137 27606316 27604988 0.000000e+00 1074
14 TraesCS2A01G077300 chr6B 90.067 594 59 0 2 595 27609041 27608448 0.000000e+00 771
15 TraesCS2A01G077300 chr6B 78.922 408 76 10 4448 4849 27585389 27584986 8.050000e-68 268
16 TraesCS2A01G077300 chr6B 74.603 504 103 11 3487 3980 174669075 174669563 1.070000e-46 198
17 TraesCS2A01G077300 chr6B 77.253 233 43 9 4561 4790 483072613 483072838 1.430000e-25 128
18 TraesCS2A01G077300 chr5D 80.103 387 65 10 4480 4864 378313333 378312957 1.340000e-70 278
19 TraesCS2A01G077300 chr7B 81.308 321 52 6 4541 4861 128053555 128053867 2.250000e-63 254


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G077300 chr2A 35400609 35405489 4880 True 9014.0 9014 100.0000 1 4881 1 chr2A.!!$R1 4880
1 TraesCS2A01G077300 chrUn 76371304 76375420 4116 False 3703.0 3703 83.1020 2 4137 1 chrUn.!!$F1 4135
2 TraesCS2A01G077300 chrUn 345101352 345103607 2255 True 1943.0 1943 82.5100 1890 4137 1 chrUn.!!$R3 2247
3 TraesCS2A01G077300 chrUn 355649971 355651828 1857 False 1768.0 1768 83.9140 2 1887 1 chrUn.!!$F2 1885
4 TraesCS2A01G077300 chrUn 343603600 343604193 593 True 771.0 771 90.0670 2 595 1 chrUn.!!$R1 593
5 TraesCS2A01G077300 chrUn 343659945 343660538 593 True 771.0 771 90.0670 2 595 1 chrUn.!!$R2 593
6 TraesCS2A01G077300 chr1A 563318127 563322979 4852 False 1782.0 2817 84.4245 15 4864 2 chr1A.!!$F1 4849
7 TraesCS2A01G077300 chr3B 622019928 622024937 5009 False 1920.0 2689 81.4150 188 4849 2 chr3B.!!$F2 4661
8 TraesCS2A01G077300 chr6B 27604988 27609041 4053 True 922.5 1074 85.8015 2 4137 2 chr6B.!!$R2 4135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 658 0.034896 TTGGTTCTCAGGCGAAGTCC 59.965 55.0 0.0 0.0 0.00 3.85 F
1606 1638 0.165295 CAATGACAGACACTGCTGCG 59.835 55.0 0.0 0.0 39.51 5.18 F
2422 2461 0.035458 AGCCAGTGCAAGTGTAGACC 59.965 55.0 0.0 0.0 41.13 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2187 0.032615 TTGACTTGTTGCAAGGGGGT 60.033 50.0 0.00 0.00 0.00 4.95 R
2848 2895 0.107703 CTTCTTCAGTATGGCGCCCA 60.108 55.0 26.77 12.96 38.19 5.36 R
3918 4342 0.037590 ATTTCGCTGGTAGTTGCCCA 59.962 50.0 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.126453 AGCTCCCAAAGATAACCAGGAT 58.874 45.455 0.00 0.00 0.00 3.24
121 122 4.973168 ACAAGGAAGCAAGTTCTATCACA 58.027 39.130 0.00 0.00 35.25 3.58
127 128 5.220491 GGAAGCAAGTTCTATCACAATCGAC 60.220 44.000 0.00 0.00 35.25 4.20
135 136 2.183478 ATCACAATCGACCACAAGCA 57.817 45.000 0.00 0.00 0.00 3.91
154 155 2.324860 CACGACGTGCAGTTCTATGAA 58.675 47.619 16.06 0.00 0.00 2.57
192 193 1.004745 CCTTGGCATACCTTGTGGAGT 59.995 52.381 0.00 0.00 36.63 3.85
203 204 1.444119 TTGTGGAGTTGCGCCTGTTC 61.444 55.000 4.18 0.00 0.00 3.18
212 213 2.267642 CGCCTGTTCGGGATCCAA 59.732 61.111 15.23 0.00 0.00 3.53
216 217 1.815421 CTGTTCGGGATCCAAGGCG 60.815 63.158 15.23 7.99 0.00 5.52
242 243 0.827925 TTCAGAGGAGGTGCTCACGT 60.828 55.000 1.04 0.00 31.08 4.49
265 266 4.458397 AGATCAGAGCCATGTTTGGTATG 58.542 43.478 0.00 0.00 45.57 2.39
269 270 2.515429 AGAGCCATGTTTGGTATGGGAT 59.485 45.455 6.19 0.00 45.57 3.85
283 284 0.252421 TGGGATCAGGAGAGCACAGT 60.252 55.000 0.00 0.00 38.95 3.55
286 287 2.298729 GGGATCAGGAGAGCACAGTATC 59.701 54.545 0.00 0.00 32.64 2.24
301 302 5.396484 CACAGTATCTTGCCAATTGTTGAG 58.604 41.667 4.43 0.00 0.00 3.02
312 313 3.318839 CCAATTGTTGAGGCTGTGAAGAA 59.681 43.478 4.43 0.00 0.00 2.52
367 368 3.117663 AGAACAAGTTCAAAGTGGGGCTA 60.118 43.478 14.69 0.00 41.84 3.93
370 371 3.222603 CAAGTTCAAAGTGGGGCTAGTT 58.777 45.455 0.00 0.00 0.00 2.24
376 377 5.968676 TCAAAGTGGGGCTAGTTATATGT 57.031 39.130 0.00 0.00 0.00 2.29
394 395 1.303309 GTGCATGCACATACCTCCTC 58.697 55.000 39.12 13.39 45.53 3.71
397 398 0.882042 CATGCACATACCTCCTCGCC 60.882 60.000 0.00 0.00 0.00 5.54
442 443 3.081409 ACCGATTACTGGGGCGCT 61.081 61.111 7.64 0.00 0.00 5.92
466 467 0.941463 CCGCGCCTGATCTCATACAC 60.941 60.000 0.00 0.00 0.00 2.90
491 492 2.877786 CACAACTGGTGCAGATACACAA 59.122 45.455 0.00 0.00 42.55 3.33
497 498 4.019860 ACTGGTGCAGATACACAAGAGAAT 60.020 41.667 6.08 0.00 43.23 2.40
500 501 5.187772 TGGTGCAGATACACAAGAGAATAGT 59.812 40.000 0.00 0.00 42.55 2.12
514 515 2.006888 GAATAGTTGCTAGTTGCGGCA 58.993 47.619 0.00 0.00 46.63 5.69
601 602 2.254546 TTCAGGTGACGCTTCAACAT 57.745 45.000 11.23 0.00 42.59 2.71
604 605 1.872952 CAGGTGACGCTTCAACATGAA 59.127 47.619 11.23 0.00 42.59 2.57
611 612 5.734498 GTGACGCTTCAACATGAATCATAAC 59.266 40.000 0.00 0.00 35.59 1.89
616 617 7.651304 ACGCTTCAACATGAATCATAACAAAAA 59.349 29.630 0.00 0.00 35.59 1.94
618 619 9.749490 GCTTCAACATGAATCATAACAAAAATG 57.251 29.630 0.00 0.00 35.59 2.32
640 641 7.945033 ATGTGTAGCTAAACAATGTTTTTGG 57.055 32.000 20.50 8.81 0.00 3.28
647 648 6.980397 AGCTAAACAATGTTTTTGGTTCTCAG 59.020 34.615 16.99 5.97 31.02 3.35
648 649 6.200854 GCTAAACAATGTTTTTGGTTCTCAGG 59.799 38.462 16.99 0.00 31.02 3.86
655 657 1.878953 TTTGGTTCTCAGGCGAAGTC 58.121 50.000 0.00 0.00 0.00 3.01
656 658 0.034896 TTGGTTCTCAGGCGAAGTCC 59.965 55.000 0.00 0.00 0.00 3.85
664 666 1.672356 AGGCGAAGTCCACATGTGC 60.672 57.895 20.81 7.84 0.00 4.57
668 670 1.001378 GCGAAGTCCACATGTGCTTTT 60.001 47.619 20.81 12.69 0.00 2.27
669 671 2.918131 GCGAAGTCCACATGTGCTTTTC 60.918 50.000 20.81 18.71 0.00 2.29
670 672 2.549754 CGAAGTCCACATGTGCTTTTCT 59.450 45.455 20.81 9.88 0.00 2.52
675 677 3.316308 GTCCACATGTGCTTTTCTGAACT 59.684 43.478 20.81 0.00 0.00 3.01
677 679 4.756642 TCCACATGTGCTTTTCTGAACTAG 59.243 41.667 20.81 1.60 0.00 2.57
679 681 5.239306 CCACATGTGCTTTTCTGAACTAGAA 59.761 40.000 20.81 0.00 43.53 2.10
683 685 5.428253 TGTGCTTTTCTGAACTAGAAGTGT 58.572 37.500 0.00 0.00 45.66 3.55
728 749 0.814457 AACCTAGACGCTGCAGAGAG 59.186 55.000 25.03 13.18 0.00 3.20
765 786 1.547372 GTACGACCTAGGGTGAAAGCA 59.453 52.381 14.81 0.00 35.25 3.91
770 791 3.738281 CGACCTAGGGTGAAAGCATACAG 60.738 52.174 14.81 0.00 35.25 2.74
795 816 6.848296 GCTACGCTCTTATGAAAACAATCATC 59.152 38.462 0.00 0.00 40.44 2.92
796 817 6.992063 ACGCTCTTATGAAAACAATCATCT 57.008 33.333 0.00 0.00 40.44 2.90
846 867 1.064003 ACCCTGTTGTGTATGGCAGA 58.936 50.000 0.00 0.00 0.00 4.26
858 879 2.046507 GGCAGACTGCTGGTGAGG 60.047 66.667 25.92 0.00 44.28 3.86
863 884 1.374758 GACTGCTGGTGAGGGTTCG 60.375 63.158 0.00 0.00 0.00 3.95
864 885 1.816863 GACTGCTGGTGAGGGTTCGA 61.817 60.000 0.00 0.00 0.00 3.71
916 940 1.275010 TCCTAATGCAGCGTTCTCACA 59.725 47.619 2.16 0.00 0.00 3.58
918 942 2.679837 CCTAATGCAGCGTTCTCACAAT 59.320 45.455 2.16 0.00 0.00 2.71
919 943 3.871006 CCTAATGCAGCGTTCTCACAATA 59.129 43.478 2.16 0.00 0.00 1.90
921 945 4.542662 AATGCAGCGTTCTCACAATATC 57.457 40.909 0.00 0.00 0.00 1.63
922 946 3.251479 TGCAGCGTTCTCACAATATCT 57.749 42.857 0.00 0.00 0.00 1.98
923 947 3.599343 TGCAGCGTTCTCACAATATCTT 58.401 40.909 0.00 0.00 0.00 2.40
924 948 4.002982 TGCAGCGTTCTCACAATATCTTT 58.997 39.130 0.00 0.00 0.00 2.52
925 949 4.455533 TGCAGCGTTCTCACAATATCTTTT 59.544 37.500 0.00 0.00 0.00 2.27
926 950 5.048782 TGCAGCGTTCTCACAATATCTTTTT 60.049 36.000 0.00 0.00 0.00 1.94
927 951 5.509622 GCAGCGTTCTCACAATATCTTTTTC 59.490 40.000 0.00 0.00 0.00 2.29
963 988 5.404066 CCTAAACATTGTTAACCAAAAGCCG 59.596 40.000 1.76 0.00 36.44 5.52
1010 1035 7.213178 ACCATAGAAACCTTATGAACAGGAT 57.787 36.000 0.00 0.00 35.14 3.24
1035 1060 2.359850 GCGGGCACATCAACAGGA 60.360 61.111 0.00 0.00 0.00 3.86
1040 1065 1.302511 GCACATCAACAGGACCGGT 60.303 57.895 6.92 6.92 0.00 5.28
1100 1125 5.138276 AGACATAAAGGAGGTATAGCACGA 58.862 41.667 4.48 0.00 0.00 4.35
1104 1129 2.438800 AGGAGGTATAGCACGACACT 57.561 50.000 4.48 0.00 0.00 3.55
1107 1132 4.471548 AGGAGGTATAGCACGACACTAAT 58.528 43.478 4.48 0.00 0.00 1.73
1110 1135 6.016443 AGGAGGTATAGCACGACACTAATAAC 60.016 42.308 4.48 0.00 0.00 1.89
1112 1137 7.104043 AGGTATAGCACGACACTAATAACAA 57.896 36.000 4.48 0.00 0.00 2.83
1113 1138 7.723324 AGGTATAGCACGACACTAATAACAAT 58.277 34.615 4.48 0.00 0.00 2.71
1114 1139 8.853126 AGGTATAGCACGACACTAATAACAATA 58.147 33.333 4.48 0.00 0.00 1.90
1115 1140 9.125906 GGTATAGCACGACACTAATAACAATAG 57.874 37.037 0.00 0.00 0.00 1.73
1119 1144 7.094631 AGCACGACACTAATAACAATAGTTGA 58.905 34.615 0.00 0.00 38.69 3.18
1120 1145 7.275779 AGCACGACACTAATAACAATAGTTGAG 59.724 37.037 0.00 0.00 38.69 3.02
1125 1156 7.913789 ACACTAATAACAATAGTTGAGGGTGA 58.086 34.615 0.00 0.00 38.69 4.02
1126 1157 7.822822 ACACTAATAACAATAGTTGAGGGTGAC 59.177 37.037 0.00 0.00 38.69 3.67
1131 1162 5.767816 ACAATAGTTGAGGGTGACAAAAC 57.232 39.130 0.00 0.00 0.00 2.43
1150 1181 6.314896 ACAAAACGCCAAAATGAATCAGAAAA 59.685 30.769 0.00 0.00 0.00 2.29
1157 1188 5.630680 CCAAAATGAATCAGAAAACTGACCG 59.369 40.000 0.00 0.00 36.05 4.79
1185 1217 5.637006 TCTGTGTAAAAATGTGCATACCC 57.363 39.130 0.00 0.00 0.00 3.69
1187 1219 6.477253 TCTGTGTAAAAATGTGCATACCCTA 58.523 36.000 0.00 0.00 0.00 3.53
1196 1228 1.140852 GTGCATACCCTACAGGCATCA 59.859 52.381 0.00 0.00 40.58 3.07
1208 1240 7.457852 ACCCTACAGGCATCATATATTGTCTTA 59.542 37.037 0.00 0.00 40.58 2.10
1314 1346 7.572523 CATTTCAATGGACTAAATAGCCTGA 57.427 36.000 0.00 0.00 32.78 3.86
1403 1435 5.798125 TCTCAATTATCGAGAGGCAAGAT 57.202 39.130 0.00 0.00 34.59 2.40
1474 1506 6.925610 ATGCTTAATTTCTCTTGCATACGA 57.074 33.333 0.00 0.00 39.04 3.43
1487 1519 1.590238 GCATACGACATGTCTGCAGAC 59.410 52.381 35.04 35.04 46.70 3.51
1488 1520 2.196749 CATACGACATGTCTGCAGACC 58.803 52.381 37.23 23.51 44.15 3.85
1496 1528 1.596603 TGTCTGCAGACCATGTGTTG 58.403 50.000 37.23 0.00 44.15 3.33
1497 1529 1.134128 TGTCTGCAGACCATGTGTTGT 60.134 47.619 37.23 0.00 44.15 3.32
1498 1530 1.949525 GTCTGCAGACCATGTGTTGTT 59.050 47.619 32.55 0.00 39.07 2.83
1499 1531 1.948834 TCTGCAGACCATGTGTTGTTG 59.051 47.619 13.74 0.00 0.00 3.33
1502 1534 2.098934 TGCAGACCATGTGTTGTTGTTC 59.901 45.455 0.00 0.00 0.00 3.18
1506 1538 3.115554 GACCATGTGTTGTTGTTCTTGC 58.884 45.455 0.00 0.00 0.00 4.01
1515 1547 1.199624 GTTGTTCTTGCCTGTTTGCG 58.800 50.000 0.00 0.00 0.00 4.85
1528 1560 3.751175 CCTGTTTGCGAAGGACTTCATTA 59.249 43.478 12.12 0.00 39.46 1.90
1531 1563 6.325919 TGTTTGCGAAGGACTTCATTATTT 57.674 33.333 12.12 0.00 39.46 1.40
1532 1564 6.148948 TGTTTGCGAAGGACTTCATTATTTG 58.851 36.000 12.12 0.00 39.46 2.32
1535 1567 4.217334 TGCGAAGGACTTCATTATTTGCAA 59.783 37.500 12.12 0.00 39.46 4.08
1536 1568 4.558860 GCGAAGGACTTCATTATTTGCAAC 59.441 41.667 12.12 0.00 39.46 4.17
1537 1569 5.698832 CGAAGGACTTCATTATTTGCAACA 58.301 37.500 12.12 0.00 39.46 3.33
1557 1589 6.672836 GCAACAAAATATGCAGGTAACAATGC 60.673 38.462 0.00 0.00 42.12 3.56
1578 1610 3.499737 CTCAACGGGATGCCGTGC 61.500 66.667 32.79 0.00 46.11 5.34
1591 1623 3.430862 CGTGCGACACCCCCAATG 61.431 66.667 4.73 0.00 0.00 2.82
1606 1638 0.165295 CAATGACAGACACTGCTGCG 59.835 55.000 0.00 0.00 39.51 5.18
1611 1643 4.299547 AGACACTGCTGCGCCGAA 62.300 61.111 4.18 0.00 0.00 4.30
1641 1673 2.997897 GGCCGAGACACCTCCAGT 60.998 66.667 0.00 0.00 36.04 4.00
1647 1679 1.528292 GAGACACCTCCAGTCAGCGT 61.528 60.000 0.00 0.00 38.46 5.07
1656 1688 0.799917 CCAGTCAGCGTCAGACATCG 60.800 60.000 0.41 0.00 38.46 3.84
1657 1689 0.169009 CAGTCAGCGTCAGACATCGA 59.831 55.000 0.41 0.00 38.46 3.59
1658 1690 0.449786 AGTCAGCGTCAGACATCGAG 59.550 55.000 0.41 0.00 38.46 4.04
1713 1745 4.799428 GGTTTCTCCTCGACGATTTAAGAG 59.201 45.833 0.00 0.67 0.00 2.85
1741 1773 7.559897 ACATCCAAGAAACCAAAGAAAGTAAGA 59.440 33.333 0.00 0.00 0.00 2.10
1771 1803 2.669670 CGAGGCGTCAGATATCATGGAC 60.670 54.545 5.32 8.53 0.00 4.02
1789 1821 4.825422 TGGACATCACAGATTCAGAAGAC 58.175 43.478 0.00 0.00 0.00 3.01
1799 1831 7.714813 TCACAGATTCAGAAGACAATACAAACA 59.285 33.333 0.00 0.00 0.00 2.83
1806 1838 6.770303 TCAGAAGACAATACAAACATGGTCAA 59.230 34.615 0.00 0.00 32.11 3.18
1823 1855 3.157087 GTCAATTCACCAGTTCCACCAT 58.843 45.455 0.00 0.00 0.00 3.55
1829 1861 5.975693 TTCACCAGTTCCACCATTTAATC 57.024 39.130 0.00 0.00 0.00 1.75
1836 1868 3.464720 TCCACCATTTAATCCTGCCAA 57.535 42.857 0.00 0.00 0.00 4.52
1841 1873 3.900601 ACCATTTAATCCTGCCAACACAA 59.099 39.130 0.00 0.00 0.00 3.33
1843 1875 4.871557 CCATTTAATCCTGCCAACACAATG 59.128 41.667 0.00 0.00 0.00 2.82
1887 1919 0.319083 TCGCCCAACTGTAACATCGT 59.681 50.000 0.00 0.00 0.00 3.73
1898 1930 4.106029 TGTAACATCGTTCTAGACAGCC 57.894 45.455 0.00 0.00 0.00 4.85
1900 1932 3.512033 AACATCGTTCTAGACAGCCTC 57.488 47.619 0.00 0.00 0.00 4.70
1921 1953 5.199024 TCATAAGAGAAGCAGAGAGATGC 57.801 43.478 0.00 0.00 46.88 3.91
1922 1954 5.221283 CTCATAAGAGAAGCAGAGAGATGCA 60.221 44.000 1.12 0.00 45.65 3.96
1924 1956 8.630180 CTCATAAGAGAAGCAGAGAGATGCAAC 61.630 44.444 0.00 0.00 45.65 4.17
1940 1975 3.441712 AACAGGGCAGGCAAGCAGT 62.442 57.895 4.37 0.00 35.83 4.40
1944 1979 2.202395 GGGCAGGCAAGCAGTTTGA 61.202 57.895 0.31 0.00 39.21 2.69
1969 2004 2.840066 TTCCGCCGCAACCAACAAG 61.840 57.895 0.00 0.00 0.00 3.16
1999 2034 0.245539 ACATTGTACCAGGGACGTCG 59.754 55.000 9.92 0.00 0.00 5.12
2085 2120 1.693627 AATTACCACAACAACCGCCA 58.306 45.000 0.00 0.00 0.00 5.69
2090 2125 2.518349 ACAACAACCGCCAGTGGG 60.518 61.111 12.15 0.59 37.18 4.61
2119 2154 2.441375 TGATGGACACCCACTTCTTGAA 59.559 45.455 0.00 0.00 46.98 2.69
2131 2166 1.923204 CTTCTTGAAGAGACGCCATCG 59.077 52.381 4.48 0.00 42.43 3.84
2152 2187 0.107643 TTGACTTGGGCGTCATCACA 59.892 50.000 0.00 0.00 42.91 3.58
2174 2209 2.093235 CCCCCTTGCAACAAGTCAAAAA 60.093 45.455 0.00 0.00 0.00 1.94
2182 2217 3.119137 GCAACAAGTCAAAAAGTCCCAGT 60.119 43.478 0.00 0.00 0.00 4.00
2191 2226 4.165372 TCAAAAAGTCCCAGTCTGGTTAGT 59.835 41.667 17.85 5.64 35.17 2.24
2230 2265 1.430992 TCACCCGGAGAGACCTTTTT 58.569 50.000 0.73 0.00 36.31 1.94
2233 2268 0.960861 CCCGGAGAGACCTTTTTGGC 60.961 60.000 0.73 0.00 40.22 4.52
2236 2271 1.497722 GAGAGACCTTTTTGGCGCG 59.502 57.895 0.00 0.00 40.22 6.86
2274 2309 9.710818 AATGAGTACTCCAGGTAATTCTTACTA 57.289 33.333 20.11 0.00 36.39 1.82
2278 2313 8.848182 AGTACTCCAGGTAATTCTTACTATTCG 58.152 37.037 0.00 0.00 36.39 3.34
2280 2315 8.480133 ACTCCAGGTAATTCTTACTATTCGAT 57.520 34.615 0.00 0.00 36.39 3.59
2286 2321 8.305317 AGGTAATTCTTACTATTCGATACAGCC 58.695 37.037 0.00 0.00 36.39 4.85
2287 2322 7.544915 GGTAATTCTTACTATTCGATACAGCCC 59.455 40.741 0.00 0.00 36.39 5.19
2292 2327 4.689612 ACTATTCGATACAGCCCATGTT 57.310 40.909 0.00 0.00 39.96 2.71
2298 2333 2.494059 GATACAGCCCATGTTATGCGT 58.506 47.619 0.00 0.00 39.96 5.24
2300 2335 1.094785 ACAGCCCATGTTATGCGTTC 58.905 50.000 0.00 0.00 39.96 3.95
2302 2337 0.107897 AGCCCATGTTATGCGTTCGA 60.108 50.000 0.00 0.00 0.00 3.71
2308 2343 4.499040 CCCATGTTATGCGTTCGATTTTTC 59.501 41.667 0.00 0.00 0.00 2.29
2315 2350 3.701241 TGCGTTCGATTTTTCTTGCTTT 58.299 36.364 0.00 0.00 0.00 3.51
2322 2357 7.160296 CGTTCGATTTTTCTTGCTTTTGTTTTC 59.840 33.333 0.00 0.00 0.00 2.29
2323 2358 6.691442 TCGATTTTTCTTGCTTTTGTTTTCG 58.309 32.000 0.00 0.00 0.00 3.46
2324 2359 6.528423 TCGATTTTTCTTGCTTTTGTTTTCGA 59.472 30.769 0.00 0.00 0.00 3.71
2326 2361 7.160296 CGATTTTTCTTGCTTTTGTTTTCGAAC 59.840 33.333 0.00 0.00 0.00 3.95
2327 2362 5.428793 TTTCTTGCTTTTGTTTTCGAACG 57.571 34.783 0.00 0.00 0.00 3.95
2328 2363 3.430931 TCTTGCTTTTGTTTTCGAACGG 58.569 40.909 0.00 0.00 0.00 4.44
2331 2366 4.555348 TGCTTTTGTTTTCGAACGGTAT 57.445 36.364 0.00 0.00 0.00 2.73
2332 2367 5.670149 TGCTTTTGTTTTCGAACGGTATA 57.330 34.783 0.00 0.00 0.00 1.47
2338 2373 7.895582 TTTGTTTTCGAACGGTATAAACAAG 57.104 32.000 16.90 0.00 44.54 3.16
2339 2374 5.988092 TGTTTTCGAACGGTATAAACAAGG 58.012 37.500 0.00 0.00 36.20 3.61
2343 2378 5.844301 TCGAACGGTATAAACAAGGAAAC 57.156 39.130 0.00 0.00 0.00 2.78
2354 2391 5.821516 AAACAAGGAAACGTCATGTGTTA 57.178 34.783 6.53 0.00 0.00 2.41
2368 2407 6.170506 GTCATGTGTTATGAAACAGGGTCTA 58.829 40.000 0.00 0.00 46.06 2.59
2386 2425 1.475682 CTACTAACCTCGGGACACCAC 59.524 57.143 0.00 0.00 36.13 4.16
2416 2455 0.806868 CCACATAGCCAGTGCAAGTG 59.193 55.000 0.00 0.00 41.13 3.16
2422 2461 0.035458 AGCCAGTGCAAGTGTAGACC 59.965 55.000 0.00 0.00 41.13 3.85
2430 2469 2.224281 TGCAAGTGTAGACCCAACTCAG 60.224 50.000 0.00 0.00 0.00 3.35
2434 2473 2.639839 AGTGTAGACCCAACTCAGCAAT 59.360 45.455 0.00 0.00 0.00 3.56
2440 2479 1.214589 CCAACTCAGCAATGGCAGC 59.785 57.895 0.00 0.00 44.61 5.25
2446 2485 2.033141 AGCAATGGCAGCTCGTGT 59.967 55.556 0.00 0.00 44.61 4.49
2447 2486 2.177531 GCAATGGCAGCTCGTGTG 59.822 61.111 0.00 0.00 40.72 3.82
2511 2550 4.282195 GGACTCTTGGACTTCAGAGAAGAA 59.718 45.833 13.23 0.00 33.09 2.52
2523 2562 0.915364 GAGAAGAAGTGGGGGCAGAT 59.085 55.000 0.00 0.00 0.00 2.90
2562 2601 4.583871 AGCCAGTAGAGGAAAATTCACTG 58.416 43.478 5.02 5.02 34.54 3.66
2566 2605 6.574465 GCCAGTAGAGGAAAATTCACTGTCTA 60.574 42.308 9.25 2.21 33.23 2.59
2624 2663 0.442699 GGACGATCGCCTTTTGTGAC 59.557 55.000 16.60 0.00 36.02 3.67
2640 2679 2.960170 ACGCAGTACCGTCTGTCC 59.040 61.111 0.00 0.00 41.94 4.02
2643 2682 1.136984 GCAGTACCGTCTGTCCGAG 59.863 63.158 0.00 0.00 37.70 4.63
2679 2718 4.733165 ACGCCACCCACTTATATCTAGTA 58.267 43.478 0.00 0.00 0.00 1.82
2697 2736 2.131183 GTATTCTCGCAGATGAGTGGC 58.869 52.381 0.00 0.00 37.28 5.01
2723 2762 6.910972 GCAGTGTTAAACAAGTAAGTTTCCTC 59.089 38.462 0.00 0.00 41.58 3.71
2732 2774 9.574516 AAACAAGTAAGTTTCCTCTGATACATT 57.425 29.630 0.00 0.00 37.11 2.71
2760 2802 6.951256 TTATTCGGAGATTATCGCATGAAG 57.049 37.500 0.00 0.00 35.04 3.02
2765 2807 4.925646 CGGAGATTATCGCATGAAGATCAA 59.074 41.667 0.00 0.00 0.00 2.57
2771 2813 7.876582 AGATTATCGCATGAAGATCAAGATGAA 59.123 33.333 0.00 0.00 0.00 2.57
2772 2814 5.670149 ATCGCATGAAGATCAAGATGAAC 57.330 39.130 0.00 0.00 0.00 3.18
2799 2846 5.438761 AAACTGAACTGCTTACCAATGTC 57.561 39.130 0.00 0.00 0.00 3.06
2800 2847 4.357918 ACTGAACTGCTTACCAATGTCT 57.642 40.909 0.00 0.00 0.00 3.41
2802 2849 3.674997 TGAACTGCTTACCAATGTCTCC 58.325 45.455 0.00 0.00 0.00 3.71
2831 2878 0.924090 GGGTTGTTAGCCCATACCCT 59.076 55.000 0.00 0.00 44.10 4.34
2848 2895 7.455008 CCCATACCCTAGTTACATAGAACTGAT 59.545 40.741 0.00 0.00 39.96 2.90
2882 2929 1.135523 GAAGCAGCTTAGCGTTGGC 59.864 57.895 7.92 1.83 40.15 4.52
2883 2930 1.577328 GAAGCAGCTTAGCGTTGGCA 61.577 55.000 7.92 0.00 43.41 4.92
2936 2983 1.079127 GCGAAGGTTCCAGCAGCTA 60.079 57.895 0.00 0.00 0.00 3.32
2954 3001 3.009473 AGCTAGAGAATGTTTGGGCAAGA 59.991 43.478 0.00 0.00 0.00 3.02
3007 3054 1.004595 GAGCCGGAATTCGTGGTAAC 58.995 55.000 5.05 5.49 37.11 2.50
3029 3076 6.892310 ACAACAAAAACTTCTTTCATCAGC 57.108 33.333 0.00 0.00 0.00 4.26
3030 3079 6.397272 ACAACAAAAACTTCTTTCATCAGCA 58.603 32.000 0.00 0.00 0.00 4.41
3037 3086 8.579682 AAAACTTCTTTCATCAGCAATGTTAC 57.420 30.769 0.00 0.00 36.68 2.50
3039 3088 4.944962 TCTTTCATCAGCAATGTTACGG 57.055 40.909 0.00 0.00 36.68 4.02
3040 3089 3.689161 TCTTTCATCAGCAATGTTACGGG 59.311 43.478 0.00 0.00 36.68 5.28
3041 3090 3.342377 TTCATCAGCAATGTTACGGGA 57.658 42.857 0.00 0.00 36.68 5.14
3042 3091 3.558931 TCATCAGCAATGTTACGGGAT 57.441 42.857 0.00 0.00 36.68 3.85
3047 3096 0.106918 GCAATGTTACGGGATCCCCA 60.107 55.000 25.73 17.15 45.83 4.96
3050 3099 2.622942 CAATGTTACGGGATCCCCATTG 59.377 50.000 30.25 30.25 45.83 2.82
3054 3103 0.326713 TACGGGATCCCCATTGGTGA 60.327 55.000 25.73 0.00 45.83 4.02
3057 3106 0.397114 GGGATCCCCATTGGTGAACC 60.397 60.000 21.42 5.99 44.65 3.62
3085 3498 4.624336 AATATTTTTGTCGTATGCGCCA 57.376 36.364 4.18 0.00 38.14 5.69
3114 3527 0.033504 CCTGTAGAGCCACGTGTTGT 59.966 55.000 15.65 3.50 0.00 3.32
3137 3550 1.202031 GGCGGTGATTTCATTCGTCAC 60.202 52.381 6.17 0.00 41.07 3.67
3145 3558 2.251869 TTCATTCGTCACGACTACGG 57.748 50.000 0.00 0.00 44.46 4.02
3206 3619 2.872245 CAACAGATGCCCTATGGTAACG 59.128 50.000 0.00 0.00 42.51 3.18
3208 3621 1.128200 AGATGCCCTATGGTAACGCA 58.872 50.000 0.00 0.00 42.51 5.24
3217 3630 4.486887 GGTAACGCACCCACCTTT 57.513 55.556 0.00 0.00 42.07 3.11
3220 3633 1.269361 GGTAACGCACCCACCTTTTTG 60.269 52.381 0.00 0.00 42.07 2.44
3221 3634 0.386113 TAACGCACCCACCTTTTTGC 59.614 50.000 0.00 0.00 0.00 3.68
3222 3635 1.608717 AACGCACCCACCTTTTTGCA 61.609 50.000 0.00 0.00 34.49 4.08
3223 3636 1.367102 CGCACCCACCTTTTTGCAT 59.633 52.632 0.00 0.00 34.49 3.96
3229 3642 3.944015 CACCCACCTTTTTGCATTTTTCA 59.056 39.130 0.00 0.00 0.00 2.69
3230 3643 4.579753 CACCCACCTTTTTGCATTTTTCAT 59.420 37.500 0.00 0.00 0.00 2.57
3231 3644 5.067544 CACCCACCTTTTTGCATTTTTCATT 59.932 36.000 0.00 0.00 0.00 2.57
3232 3645 5.655974 ACCCACCTTTTTGCATTTTTCATTT 59.344 32.000 0.00 0.00 0.00 2.32
3235 3648 7.647318 CCCACCTTTTTGCATTTTTCATTTAAC 59.353 33.333 0.00 0.00 0.00 2.01
3236 3649 8.404765 CCACCTTTTTGCATTTTTCATTTAACT 58.595 29.630 0.00 0.00 0.00 2.24
3237 3650 9.224058 CACCTTTTTGCATTTTTCATTTAACTG 57.776 29.630 0.00 0.00 0.00 3.16
3238 3651 8.955388 ACCTTTTTGCATTTTTCATTTAACTGT 58.045 25.926 0.00 0.00 0.00 3.55
3239 3652 9.224058 CCTTTTTGCATTTTTCATTTAACTGTG 57.776 29.630 0.00 0.00 0.00 3.66
3244 3657 8.883954 TGCATTTTTCATTTAACTGTGATTGA 57.116 26.923 0.00 0.00 0.00 2.57
3245 3658 8.763356 TGCATTTTTCATTTAACTGTGATTGAC 58.237 29.630 0.00 0.00 0.00 3.18
3261 3675 7.710852 GTGATTGACACTAAACGATCAAATG 57.289 36.000 0.00 0.00 45.13 2.32
3264 3678 3.124466 TGACACTAAACGATCAAATGCCG 59.876 43.478 0.00 0.00 0.00 5.69
3265 3679 3.331150 ACACTAAACGATCAAATGCCGA 58.669 40.909 0.00 0.00 0.00 5.54
3266 3680 3.749088 ACACTAAACGATCAAATGCCGAA 59.251 39.130 0.00 0.00 0.00 4.30
3273 3687 2.669364 GATCAAATGCCGAATGCCATC 58.331 47.619 0.00 0.00 40.16 3.51
3280 3696 2.929641 TGCCGAATGCCATCTTCATAA 58.070 42.857 0.00 0.00 40.16 1.90
3286 3702 6.074142 GCCGAATGCCATCTTCATAATTTTTC 60.074 38.462 0.00 0.00 0.00 2.29
3287 3703 6.979817 CCGAATGCCATCTTCATAATTTTTCA 59.020 34.615 0.00 0.00 0.00 2.69
3288 3704 7.043192 CCGAATGCCATCTTCATAATTTTTCAC 60.043 37.037 0.00 0.00 0.00 3.18
3295 3711 9.065871 CCATCTTCATAATTTTTCACGTCTTTC 57.934 33.333 0.00 0.00 0.00 2.62
3296 3712 9.065871 CATCTTCATAATTTTTCACGTCTTTCC 57.934 33.333 0.00 0.00 0.00 3.13
3301 3717 9.458374 TCATAATTTTTCACGTCTTTCCTTTTC 57.542 29.630 0.00 0.00 0.00 2.29
3313 3731 5.412904 GTCTTTCCTTTTCTGGTGTAGATGG 59.587 44.000 0.00 0.00 34.80 3.51
3456 3874 6.857777 AATGAGCACATAAAGATAGCTGAC 57.142 37.500 0.00 0.00 35.36 3.51
3555 3973 0.467290 GGTTCCCAAAGCTGACCACA 60.467 55.000 0.00 0.00 0.00 4.17
3558 3976 2.270986 CCCAAAGCTGACCACAGGC 61.271 63.158 0.00 0.00 43.62 4.85
3572 3990 3.971702 AGGCCCTTGGGTCTGCAC 61.972 66.667 12.63 0.00 0.00 4.57
3596 4014 2.483013 GGTACGAGCTTCATGCCACATA 60.483 50.000 0.00 0.00 44.23 2.29
3598 4016 1.482182 ACGAGCTTCATGCCACATAGA 59.518 47.619 0.00 0.00 44.23 1.98
3608 4028 2.790433 TGCCACATAGAAACACCTTCC 58.210 47.619 0.00 0.00 34.21 3.46
3610 4030 3.010420 GCCACATAGAAACACCTTCCTC 58.990 50.000 0.00 0.00 34.21 3.71
3611 4031 3.559171 GCCACATAGAAACACCTTCCTCA 60.559 47.826 0.00 0.00 34.21 3.86
3613 4033 5.629133 GCCACATAGAAACACCTTCCTCATA 60.629 44.000 0.00 0.00 34.21 2.15
3614 4034 6.595682 CCACATAGAAACACCTTCCTCATAT 58.404 40.000 0.00 0.00 34.21 1.78
3617 4037 7.657761 CACATAGAAACACCTTCCTCATATACC 59.342 40.741 0.00 0.00 34.21 2.73
3618 4038 5.632034 AGAAACACCTTCCTCATATACCC 57.368 43.478 0.00 0.00 34.21 3.69
3620 4040 2.702748 ACACCTTCCTCATATACCCCC 58.297 52.381 0.00 0.00 0.00 5.40
3621 4041 2.021441 ACACCTTCCTCATATACCCCCA 60.021 50.000 0.00 0.00 0.00 4.96
3626 4046 5.920664 ACCTTCCTCATATACCCCCATTTTA 59.079 40.000 0.00 0.00 0.00 1.52
3627 4047 6.045577 ACCTTCCTCATATACCCCCATTTTAG 59.954 42.308 0.00 0.00 0.00 1.85
3628 4048 6.045577 CCTTCCTCATATACCCCCATTTTAGT 59.954 42.308 0.00 0.00 0.00 2.24
3630 4050 6.154645 TCCTCATATACCCCCATTTTAGTGA 58.845 40.000 0.00 0.00 0.00 3.41
3631 4051 6.272324 TCCTCATATACCCCCATTTTAGTGAG 59.728 42.308 0.00 0.00 0.00 3.51
3633 4053 5.371176 TCATATACCCCCATTTTAGTGAGCA 59.629 40.000 0.00 0.00 0.00 4.26
3634 4054 4.814224 ATACCCCCATTTTAGTGAGCAT 57.186 40.909 0.00 0.00 0.00 3.79
3639 4059 4.937015 CCCCCATTTTAGTGAGCATTTTTG 59.063 41.667 0.00 0.00 0.00 2.44
3641 4061 4.091800 CCCATTTTAGTGAGCATTTTTGCG 59.908 41.667 0.00 0.00 40.27 4.85
3642 4062 4.922692 CCATTTTAGTGAGCATTTTTGCGA 59.077 37.500 0.00 0.00 40.27 5.10
3645 4065 4.829064 TTAGTGAGCATTTTTGCGAACT 57.171 36.364 11.46 11.46 40.27 3.01
3659 4079 5.651172 TTGCGAACTACATATATGTGTGC 57.349 39.130 25.48 20.01 41.89 4.57
3663 4083 5.558273 GCGAACTACATATATGTGTGCCAAC 60.558 44.000 25.48 10.81 41.89 3.77
3667 4087 6.414732 ACTACATATATGTGTGCCAACTTGT 58.585 36.000 25.48 2.71 41.89 3.16
3675 4096 3.006323 TGTGTGCCAACTTGTTTTTCAGT 59.994 39.130 0.00 0.00 0.00 3.41
3693 4114 4.778143 GCATCCAGCGGGGTCGTT 62.778 66.667 2.05 0.00 38.89 3.85
3744 4165 4.282703 GGGACAAAGTTACAGAGGACACTA 59.717 45.833 0.00 0.00 0.00 2.74
3747 4168 5.710984 ACAAAGTTACAGAGGACACTATCG 58.289 41.667 0.00 0.00 0.00 2.92
3750 4171 2.426024 GTTACAGAGGACACTATCGCCA 59.574 50.000 0.00 0.00 0.00 5.69
3756 4177 1.409427 AGGACACTATCGCCAGTAAGC 59.591 52.381 0.00 0.00 0.00 3.09
3759 4180 3.005472 GGACACTATCGCCAGTAAGCATA 59.995 47.826 0.00 0.00 0.00 3.14
3766 4187 4.054780 TCGCCAGTAAGCATACCTAAAG 57.945 45.455 0.00 0.00 32.08 1.85
3767 4188 3.449737 TCGCCAGTAAGCATACCTAAAGT 59.550 43.478 0.00 0.00 32.08 2.66
3770 4193 5.123344 CGCCAGTAAGCATACCTAAAGTTTT 59.877 40.000 0.00 0.00 32.08 2.43
3773 4196 6.095021 CCAGTAAGCATACCTAAAGTTTTCCC 59.905 42.308 0.00 0.00 32.08 3.97
3897 4321 5.938438 GGATGATCCTGCTTTATGAAGTC 57.062 43.478 3.71 0.00 32.66 3.01
3906 4330 3.265737 TGCTTTATGAAGTCTTGGGCCTA 59.734 43.478 4.53 0.00 35.25 3.93
3927 4351 3.446658 TGGCAACATTGGGCAACTA 57.553 47.368 5.18 0.00 46.17 2.24
3930 4354 0.965439 GCAACATTGGGCAACTACCA 59.035 50.000 0.00 0.00 35.88 3.25
3943 4367 4.295051 GCAACTACCAGCGAAATTCAAAA 58.705 39.130 0.00 0.00 0.00 2.44
3981 4405 0.038801 GAGGAAGCAAGCAAAGTGGC 60.039 55.000 0.00 0.00 0.00 5.01
3989 4413 0.318955 AAGCAAAGTGGCATGTTCGC 60.319 50.000 0.00 0.00 35.83 4.70
3990 4414 1.174712 AGCAAAGTGGCATGTTCGCT 61.175 50.000 0.00 0.00 35.83 4.93
3995 4419 1.007502 GTGGCATGTTCGCTGCAAA 60.008 52.632 0.00 0.00 41.47 3.68
3997 4421 2.090524 GGCATGTTCGCTGCAAAGC 61.091 57.895 0.00 0.00 41.47 3.51
3998 4422 1.080974 GCATGTTCGCTGCAAAGCT 60.081 52.632 0.00 0.00 39.46 3.74
4014 4438 4.620332 GCAAAGCTACTCTCATGAGACACT 60.620 45.833 21.67 12.72 42.73 3.55
4017 4441 2.757868 GCTACTCTCATGAGACACTGGT 59.242 50.000 21.67 18.45 42.73 4.00
4033 4459 2.979678 ACTGGTGTGTCCTACTGGAAAT 59.020 45.455 0.00 0.00 45.18 2.17
4039 4465 3.074412 GTGTCCTACTGGAAATGTGGTG 58.926 50.000 0.00 0.00 45.18 4.17
4051 4477 4.033932 GGAAATGTGGTGTTCAGCAAAAAC 59.966 41.667 6.27 0.00 0.00 2.43
4052 4478 2.663826 TGTGGTGTTCAGCAAAAACC 57.336 45.000 6.27 4.61 0.00 3.27
4055 4481 1.480137 TGGTGTTCAGCAAAAACCCAG 59.520 47.619 8.33 0.00 0.00 4.45
4057 4483 1.134848 GTGTTCAGCAAAAACCCAGCA 60.135 47.619 0.00 0.00 0.00 4.41
4085 4511 1.137404 GTGCGGCAATCACCATGAC 59.863 57.895 3.23 0.00 0.00 3.06
4103 4529 2.299582 TGACCGAATTTAGTTCCCGACA 59.700 45.455 0.00 0.00 33.04 4.35
4107 4533 3.120095 CCGAATTTAGTTCCCGACAAACC 60.120 47.826 0.00 0.00 33.04 3.27
4108 4534 3.749609 CGAATTTAGTTCCCGACAAACCT 59.250 43.478 0.00 0.00 33.04 3.50
4109 4535 4.378046 CGAATTTAGTTCCCGACAAACCTG 60.378 45.833 0.00 0.00 33.04 4.00
4119 4545 1.470632 CGACAAACCTGCTTTTTGCCA 60.471 47.619 5.49 0.00 42.00 4.92
4126 4552 2.101415 ACCTGCTTTTTGCCAAAGAGAC 59.899 45.455 11.56 4.08 42.00 3.36
4128 4554 3.378339 CTGCTTTTTGCCAAAGAGACAG 58.622 45.455 11.56 12.73 42.00 3.51
4129 4555 2.760092 TGCTTTTTGCCAAAGAGACAGT 59.240 40.909 11.56 0.00 42.00 3.55
4130 4556 3.118542 GCTTTTTGCCAAAGAGACAGTG 58.881 45.455 11.56 0.00 35.15 3.66
4138 4565 4.574828 TGCCAAAGAGACAGTGTTTCTTAC 59.425 41.667 24.72 18.22 36.25 2.34
4144 4571 4.686554 AGAGACAGTGTTTCTTACGCATTC 59.313 41.667 10.44 0.00 39.79 2.67
4148 4575 3.185594 CAGTGTTTCTTACGCATTCGGAA 59.814 43.478 0.00 0.00 39.79 4.30
4196 4623 9.283768 TCTGCTCTAAACAGAGATTCTATCTAG 57.716 37.037 5.85 0.00 40.38 2.43
4197 4624 7.881142 TGCTCTAAACAGAGATTCTATCTAGC 58.119 38.462 5.85 0.00 40.38 3.42
4199 4626 6.904498 TCTAAACAGAGATTCTATCTAGCGC 58.096 40.000 0.00 0.00 40.38 5.92
4200 4627 5.782893 AAACAGAGATTCTATCTAGCGCT 57.217 39.130 17.26 17.26 40.38 5.92
4202 4629 4.651778 ACAGAGATTCTATCTAGCGCTCT 58.348 43.478 16.34 0.07 40.38 4.09
4204 4631 6.234920 ACAGAGATTCTATCTAGCGCTCTAA 58.765 40.000 16.34 0.00 40.38 2.10
4205 4632 6.148811 ACAGAGATTCTATCTAGCGCTCTAAC 59.851 42.308 16.34 0.00 40.38 2.34
4207 4634 5.239351 AGATTCTATCTAGCGCTCTAACGA 58.761 41.667 16.34 3.53 38.00 3.85
4208 4635 5.878116 AGATTCTATCTAGCGCTCTAACGAT 59.122 40.000 16.34 11.85 38.00 3.73
4212 4640 4.671880 ATCTAGCGCTCTAACGATGTAG 57.328 45.455 16.34 0.63 31.83 2.74
4220 4648 5.275788 GCGCTCTAACGATGTAGTTTAGTTG 60.276 44.000 0.00 0.00 35.70 3.16
4222 4650 6.327934 GCTCTAACGATGTAGTTTAGTTGGA 58.672 40.000 0.00 0.00 35.70 3.53
4223 4651 6.810182 GCTCTAACGATGTAGTTTAGTTGGAA 59.190 38.462 0.00 0.00 33.24 3.53
4225 4653 9.367444 CTCTAACGATGTAGTTTAGTTGGAAAT 57.633 33.333 0.00 0.00 33.24 2.17
4250 4678 7.751732 TGTTTCCATCTCGACAAAATTATCTG 58.248 34.615 0.00 0.00 0.00 2.90
4251 4679 5.991328 TCCATCTCGACAAAATTATCTGC 57.009 39.130 0.00 0.00 0.00 4.26
4253 4681 4.271049 CCATCTCGACAAAATTATCTGCGT 59.729 41.667 0.00 0.00 0.00 5.24
4254 4682 4.840401 TCTCGACAAAATTATCTGCGTG 57.160 40.909 0.00 0.00 0.00 5.34
4262 4690 7.900864 CGACAAAATTATCTGCGTGTTGTAATA 59.099 33.333 0.00 0.00 0.00 0.98
4293 4721 4.996788 ATGGACTAGTACCGTTCGAAAT 57.003 40.909 1.66 0.00 0.00 2.17
4296 4724 6.266168 TGGACTAGTACCGTTCGAAATTTA 57.734 37.500 1.66 0.00 0.00 1.40
4297 4725 6.686630 TGGACTAGTACCGTTCGAAATTTAA 58.313 36.000 1.66 0.00 0.00 1.52
4298 4726 7.151308 TGGACTAGTACCGTTCGAAATTTAAA 58.849 34.615 1.66 0.00 0.00 1.52
4299 4727 7.329226 TGGACTAGTACCGTTCGAAATTTAAAG 59.671 37.037 1.66 0.00 0.00 1.85
4301 4729 8.816640 ACTAGTACCGTTCGAAATTTAAAGAA 57.183 30.769 0.00 0.00 0.00 2.52
4303 4731 9.521179 CTAGTACCGTTCGAAATTTAAAGAAAC 57.479 33.333 0.00 0.00 0.00 2.78
4321 4749 7.816945 AAGAAACTTTAAATCGCATCATTGG 57.183 32.000 0.00 0.00 0.00 3.16
4322 4750 6.924111 AGAAACTTTAAATCGCATCATTGGT 58.076 32.000 0.00 0.00 0.00 3.67
4323 4751 7.029563 AGAAACTTTAAATCGCATCATTGGTC 58.970 34.615 0.00 0.00 0.00 4.02
4324 4752 5.895636 ACTTTAAATCGCATCATTGGTCA 57.104 34.783 0.00 0.00 0.00 4.02
4329 4757 2.416680 TCGCATCATTGGTCATGGAA 57.583 45.000 0.00 0.00 33.07 3.53
4349 4779 2.997485 AAAAGCAGAGATCGGCAAAC 57.003 45.000 7.68 0.00 39.54 2.93
4354 4784 1.448540 AGAGATCGGCAAACGCAGG 60.449 57.895 0.00 0.00 43.86 4.85
4360 4790 1.082104 CGGCAAACGCAGGAAGTTC 60.082 57.895 0.00 0.00 34.82 3.01
4362 4792 1.082104 GCAAACGCAGGAAGTTCCG 60.082 57.895 16.31 12.06 42.75 4.30
4364 4794 0.941542 CAAACGCAGGAAGTTCCGAA 59.058 50.000 16.31 0.00 42.75 4.30
4402 4833 7.816490 GTTGTTACGATACAGACTGTTTTTG 57.184 36.000 14.50 8.46 0.00 2.44
4403 4834 7.404203 GTTGTTACGATACAGACTGTTTTTGT 58.596 34.615 14.50 13.53 0.00 2.83
4412 4843 4.183101 CAGACTGTTTTTGTGGCAAATGT 58.817 39.130 0.00 0.00 0.00 2.71
4464 4899 6.484977 TGAAAACTAAATGGGGCATTGAAAAC 59.515 34.615 0.00 0.00 34.04 2.43
4468 4903 5.997129 ACTAAATGGGGCATTGAAAACAAAG 59.003 36.000 0.00 0.00 34.04 2.77
4473 4908 1.872952 GGCATTGAAAACAAAGGTGGC 59.127 47.619 0.00 0.00 0.00 5.01
4476 4911 2.307934 TTGAAAACAAAGGTGGCTGC 57.692 45.000 0.00 0.00 0.00 5.25
4478 4913 0.752658 GAAAACAAAGGTGGCTGCCT 59.247 50.000 21.03 0.00 41.41 4.75
4489 4924 2.048877 GCTGCCTTTGCACGCATT 60.049 55.556 2.99 0.00 44.23 3.56
4491 4926 1.893168 GCTGCCTTTGCACGCATTTG 61.893 55.000 2.99 0.00 44.23 2.32
4514 4949 1.294659 CGTCAGTCTGCTCTTTGGGC 61.295 60.000 0.00 0.00 0.00 5.36
4522 4957 1.372128 GCTCTTTGGGCGCAAACAG 60.372 57.895 23.49 22.60 0.00 3.16
4524 4959 0.239347 CTCTTTGGGCGCAAACAGAG 59.761 55.000 23.49 23.23 0.00 3.35
4527 4962 2.920076 TTTGGGCGCAAACAGAGGGT 62.920 55.000 23.49 0.00 0.00 4.34
4546 4981 2.611518 GTGAAGATCACCAAGACCGAG 58.388 52.381 0.00 0.00 41.37 4.63
4552 4987 1.808411 TCACCAAGACCGAGCATTTC 58.192 50.000 0.00 0.00 0.00 2.17
4592 5028 5.962533 AGCACTTGTAGTGATCATCATCGAC 60.963 44.000 10.82 0.00 41.62 4.20
4670 5107 4.512944 AGAACAACATGTCAAGCACACTAG 59.487 41.667 0.00 0.00 38.04 2.57
4675 5112 2.445565 TGTCAAGCACACTAGCAGAG 57.554 50.000 0.00 0.00 36.85 3.35
4676 5113 1.001293 TGTCAAGCACACTAGCAGAGG 59.999 52.381 0.00 0.00 36.85 3.69
4678 5115 0.322975 CAAGCACACTAGCAGAGGGT 59.677 55.000 0.00 0.00 45.40 4.34
4680 5117 0.610687 AGCACACTAGCAGAGGGTTC 59.389 55.000 0.00 0.00 39.52 3.62
4689 5126 1.538876 CAGAGGGTTCTGGGGTGGA 60.539 63.158 0.00 0.00 45.79 4.02
4693 5130 1.421646 GAGGGTTCTGGGGTGGATATG 59.578 57.143 0.00 0.00 0.00 1.78
4705 5142 3.606687 GGTGGATATGAAAGAACGGTGT 58.393 45.455 0.00 0.00 0.00 4.16
4713 5150 2.940410 TGAAAGAACGGTGTTGTCCTTC 59.060 45.455 0.00 0.00 0.00 3.46
4714 5151 1.963172 AAGAACGGTGTTGTCCTTCC 58.037 50.000 0.00 0.00 0.00 3.46
4721 5158 1.975680 GGTGTTGTCCTTCCTCACCTA 59.024 52.381 0.00 0.00 43.34 3.08
4731 5168 2.024176 TCCTCACCTAAGTTGCTCCA 57.976 50.000 0.00 0.00 0.00 3.86
4736 5173 2.002586 CACCTAAGTTGCTCCACATCG 58.997 52.381 0.00 0.00 0.00 3.84
4791 5228 1.406898 CGCCATTCTCTAGCTCACTGA 59.593 52.381 0.00 0.00 0.00 3.41
4792 5229 2.159184 CGCCATTCTCTAGCTCACTGAA 60.159 50.000 0.00 0.00 0.00 3.02
4799 5236 7.094463 CCATTCTCTAGCTCACTGAACATTTTT 60.094 37.037 0.00 0.00 0.00 1.94
4800 5237 7.426929 TTCTCTAGCTCACTGAACATTTTTC 57.573 36.000 0.00 0.00 0.00 2.29
4809 5246 3.697045 ACTGAACATTTTTCGTTGGGACA 59.303 39.130 0.00 0.00 0.00 4.02
4827 5265 2.187946 GAGGGACCGATGCAGGTG 59.812 66.667 1.69 0.00 46.09 4.00
4850 5288 8.520351 GGTGCAGGAAATAAGTACTAAAACAAT 58.480 33.333 0.00 0.00 0.00 2.71
4851 5289 9.556030 GTGCAGGAAATAAGTACTAAAACAATC 57.444 33.333 0.00 0.00 0.00 2.67
4852 5290 9.290988 TGCAGGAAATAAGTACTAAAACAATCA 57.709 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.649088 TCCATCTCGACGACATATTGTT 57.351 40.909 0.00 0.00 0.00 2.83
38 39 3.731431 TCCTGGTTATCTTTGGGAGCTA 58.269 45.455 0.00 0.00 0.00 3.32
43 44 3.951563 TCCATCCTGGTTATCTTTGGG 57.048 47.619 0.00 0.00 39.03 4.12
60 61 9.507329 GAATAGACATTAAGAAATGCCTATCCA 57.493 33.333 7.20 0.00 43.75 3.41
101 102 5.352569 CGATTGTGATAGAACTTGCTTCCTT 59.647 40.000 0.00 0.00 0.00 3.36
121 122 1.282248 CGTCGTGCTTGTGGTCGATT 61.282 55.000 0.00 0.00 34.93 3.34
135 136 2.228103 TCTTCATAGAACTGCACGTCGT 59.772 45.455 0.00 0.00 0.00 4.34
154 155 5.738909 CCAAGGACAGTATGAACATCTTCT 58.261 41.667 0.00 0.00 39.69 2.85
192 193 2.435938 GATCCCGAACAGGCGCAA 60.436 61.111 10.83 0.00 39.21 4.85
203 204 1.889105 CATGACGCCTTGGATCCCG 60.889 63.158 9.90 7.99 0.00 5.14
212 213 0.976641 TCCTCTGAAACATGACGCCT 59.023 50.000 0.00 0.00 0.00 5.52
216 217 2.079925 GCACCTCCTCTGAAACATGAC 58.920 52.381 0.00 0.00 0.00 3.06
242 243 5.455183 CCATACCAAACATGGCTCTGATCTA 60.455 44.000 0.00 0.00 36.77 1.98
265 266 1.781786 TACTGTGCTCTCCTGATCCC 58.218 55.000 0.00 0.00 0.00 3.85
269 270 2.167281 GCAAGATACTGTGCTCTCCTGA 59.833 50.000 0.00 0.00 37.78 3.86
301 302 2.271800 CCGTATGTCTTCTTCACAGCC 58.728 52.381 0.00 0.00 0.00 4.85
376 377 0.179076 CGAGGAGGTATGTGCATGCA 60.179 55.000 18.46 18.46 0.00 3.96
394 395 1.841663 CGTTCTTCAGTGTTGGGGCG 61.842 60.000 0.00 0.00 0.00 6.13
397 398 2.240493 AGTCGTTCTTCAGTGTTGGG 57.760 50.000 0.00 0.00 0.00 4.12
449 450 1.797046 CATGTGTATGAGATCAGGCGC 59.203 52.381 0.00 0.00 36.36 6.53
451 452 2.547211 GTGCATGTGTATGAGATCAGGC 59.453 50.000 0.00 0.00 36.36 4.85
491 492 3.786635 CCGCAACTAGCAACTATTCTCT 58.213 45.455 0.00 0.00 46.13 3.10
497 498 3.616284 TTGCCGCAACTAGCAACTA 57.384 47.368 0.38 0.00 43.74 2.24
500 501 1.269517 CCTTTTTGCCGCAACTAGCAA 60.270 47.619 4.98 0.00 46.74 3.91
514 515 3.075134 AGAGATCTGCCTTCACCCTTTTT 59.925 43.478 0.00 0.00 0.00 1.94
568 569 5.537188 GTCACCTGAATAAATGGCAAACAA 58.463 37.500 0.00 0.00 0.00 2.83
571 572 3.366883 GCGTCACCTGAATAAATGGCAAA 60.367 43.478 0.00 0.00 0.00 3.68
572 573 2.163412 GCGTCACCTGAATAAATGGCAA 59.837 45.455 0.00 0.00 0.00 4.52
616 617 7.496747 ACCAAAAACATTGTTTAGCTACACAT 58.503 30.769 13.28 2.07 0.00 3.21
618 619 7.704899 AGAACCAAAAACATTGTTTAGCTACAC 59.295 33.333 14.81 2.95 0.00 2.90
619 620 7.777095 AGAACCAAAAACATTGTTTAGCTACA 58.223 30.769 14.81 0.00 0.00 2.74
629 630 3.052036 CGCCTGAGAACCAAAAACATTG 58.948 45.455 0.00 0.00 0.00 2.82
632 633 2.045561 TCGCCTGAGAACCAAAAACA 57.954 45.000 0.00 0.00 0.00 2.83
633 634 2.357952 ACTTCGCCTGAGAACCAAAAAC 59.642 45.455 0.00 0.00 0.00 2.43
640 641 0.033504 TGTGGACTTCGCCTGAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
647 648 1.237285 AAGCACATGTGGACTTCGCC 61.237 55.000 26.55 7.77 0.00 5.54
648 649 0.593128 AAAGCACATGTGGACTTCGC 59.407 50.000 26.55 10.81 0.00 4.70
655 657 3.996150 AGTTCAGAAAAGCACATGTGG 57.004 42.857 26.55 8.69 0.00 4.17
656 658 5.929697 TCTAGTTCAGAAAAGCACATGTG 57.070 39.130 21.83 21.83 0.00 3.21
696 717 7.598278 CAGCGTCTAGGTTATCAAGATAGAAT 58.402 38.462 0.00 0.00 0.00 2.40
703 724 3.119291 CTGCAGCGTCTAGGTTATCAAG 58.881 50.000 0.00 0.00 0.00 3.02
728 749 2.860293 CCGTGTGGTCGATGTTGC 59.140 61.111 0.00 0.00 0.00 4.17
750 771 2.092914 GCTGTATGCTTTCACCCTAGGT 60.093 50.000 8.29 0.00 38.95 3.08
770 791 6.719365 ATGATTGTTTTCATAAGAGCGTAGC 58.281 36.000 0.00 0.00 44.34 3.58
795 816 2.455032 CGCGACTTGACATCCTTCTAG 58.545 52.381 0.00 0.00 0.00 2.43
796 817 1.469251 GCGCGACTTGACATCCTTCTA 60.469 52.381 12.10 0.00 0.00 2.10
846 867 1.407656 TTCGAACCCTCACCAGCAGT 61.408 55.000 0.00 0.00 0.00 4.40
858 879 5.918011 TGAAAAACATGCATAGTTTCGAACC 59.082 36.000 20.22 0.00 38.17 3.62
863 884 5.405269 GGGTGTGAAAAACATGCATAGTTTC 59.595 40.000 20.22 18.30 41.97 2.78
864 885 5.163364 TGGGTGTGAAAAACATGCATAGTTT 60.163 36.000 16.54 16.54 41.97 2.66
940 964 6.210078 TCGGCTTTTGGTTAACAATGTTTAG 58.790 36.000 3.17 0.00 39.21 1.85
946 971 2.560981 CCCTCGGCTTTTGGTTAACAAT 59.439 45.455 8.10 0.00 39.21 2.71
947 972 1.957877 CCCTCGGCTTTTGGTTAACAA 59.042 47.619 8.10 0.00 37.28 2.83
963 988 0.980423 AGACCTCTGTTTCTGCCCTC 59.020 55.000 0.00 0.00 0.00 4.30
998 1023 1.006086 CGCACGCATCCTGTTCATAA 58.994 50.000 0.00 0.00 0.00 1.90
1052 1077 3.780064 CTGCAGCTCGATGCCGCTA 62.780 63.158 0.00 0.00 44.85 4.26
1055 1080 2.806856 GAACTGCAGCTCGATGCCG 61.807 63.158 15.27 4.85 45.91 5.69
1056 1081 2.806856 CGAACTGCAGCTCGATGCC 61.807 63.158 30.63 0.00 45.91 4.40
1100 1125 7.822822 GTCACCCTCAACTATTGTTATTAGTGT 59.177 37.037 0.00 0.00 34.60 3.55
1104 1129 9.575868 TTTTGTCACCCTCAACTATTGTTATTA 57.424 29.630 0.00 0.00 34.60 0.98
1107 1132 6.017770 CGTTTTGTCACCCTCAACTATTGTTA 60.018 38.462 0.00 0.00 34.60 2.41
1110 1135 4.783242 CGTTTTGTCACCCTCAACTATTG 58.217 43.478 0.00 0.00 0.00 1.90
1112 1137 2.812011 GCGTTTTGTCACCCTCAACTAT 59.188 45.455 0.00 0.00 0.00 2.12
1113 1138 2.215196 GCGTTTTGTCACCCTCAACTA 58.785 47.619 0.00 0.00 0.00 2.24
1114 1139 1.021968 GCGTTTTGTCACCCTCAACT 58.978 50.000 0.00 0.00 0.00 3.16
1115 1140 0.030235 GGCGTTTTGTCACCCTCAAC 59.970 55.000 0.00 0.00 0.00 3.18
1117 1142 0.394488 TTGGCGTTTTGTCACCCTCA 60.394 50.000 0.00 0.00 0.00 3.86
1119 1144 1.187087 TTTTGGCGTTTTGTCACCCT 58.813 45.000 0.00 0.00 0.00 4.34
1120 1145 1.864082 CATTTTGGCGTTTTGTCACCC 59.136 47.619 0.00 0.00 0.00 4.61
1125 1156 4.942852 TCTGATTCATTTTGGCGTTTTGT 58.057 34.783 0.00 0.00 0.00 2.83
1126 1157 5.903764 TTCTGATTCATTTTGGCGTTTTG 57.096 34.783 0.00 0.00 0.00 2.44
1163 1194 5.321102 AGGGTATGCACATTTTTACACAGA 58.679 37.500 0.00 0.00 0.00 3.41
1165 1196 6.004574 TGTAGGGTATGCACATTTTTACACA 58.995 36.000 0.00 0.00 0.00 3.72
1166 1197 6.404293 CCTGTAGGGTATGCACATTTTTACAC 60.404 42.308 0.00 0.00 0.00 2.90
1167 1198 5.650266 CCTGTAGGGTATGCACATTTTTACA 59.350 40.000 0.00 0.00 0.00 2.41
1168 1199 5.449999 GCCTGTAGGGTATGCACATTTTTAC 60.450 44.000 0.00 0.00 37.43 2.01
1179 1211 7.568349 ACAATATATGATGCCTGTAGGGTATG 58.432 38.462 0.00 0.00 40.53 2.39
1185 1217 9.579768 GTCTAAGACAATATATGATGCCTGTAG 57.420 37.037 0.00 0.00 32.09 2.74
1187 1219 7.966812 TGTCTAAGACAATATATGATGCCTGT 58.033 34.615 0.00 0.00 39.78 4.00
1208 1240 8.408043 TGGATGTGAACTTTGATATTTTGTCT 57.592 30.769 0.00 0.00 0.00 3.41
1314 1346 6.339730 TGATTGTGTGTTGAGCTGAATTTTT 58.660 32.000 0.00 0.00 0.00 1.94
1328 1360 1.271597 GCCTCCCTCTTGATTGTGTGT 60.272 52.381 0.00 0.00 0.00 3.72
1403 1435 2.636412 CCTTGTCCTCGTCTCGGCA 61.636 63.158 0.00 0.00 0.00 5.69
1411 1443 1.479709 ATCACTCCTCCTTGTCCTCG 58.520 55.000 0.00 0.00 0.00 4.63
1448 1480 8.243426 TCGTATGCAAGAGAAATTAAGCATTTT 58.757 29.630 0.00 0.00 42.16 1.82
1454 1486 7.688372 ACATGTCGTATGCAAGAGAAATTAAG 58.312 34.615 0.00 0.00 0.00 1.85
1458 1490 5.292834 CAGACATGTCGTATGCAAGAGAAAT 59.707 40.000 19.85 0.00 28.36 2.17
1469 1501 1.824852 TGGTCTGCAGACATGTCGTAT 59.175 47.619 39.71 0.00 46.47 3.06
1474 1506 1.072806 ACACATGGTCTGCAGACATGT 59.927 47.619 39.71 36.68 46.47 3.21
1487 1519 2.101249 AGGCAAGAACAACAACACATGG 59.899 45.455 0.00 0.00 0.00 3.66
1488 1520 3.117794 CAGGCAAGAACAACAACACATG 58.882 45.455 0.00 0.00 0.00 3.21
1496 1528 1.199624 CGCAAACAGGCAAGAACAAC 58.800 50.000 0.00 0.00 0.00 3.32
1497 1529 1.098869 TCGCAAACAGGCAAGAACAA 58.901 45.000 0.00 0.00 0.00 2.83
1498 1530 1.065401 CTTCGCAAACAGGCAAGAACA 59.935 47.619 0.00 0.00 0.00 3.18
1499 1531 1.600413 CCTTCGCAAACAGGCAAGAAC 60.600 52.381 0.00 0.00 0.00 3.01
1502 1534 0.040067 GTCCTTCGCAAACAGGCAAG 60.040 55.000 0.00 0.00 0.00 4.01
1506 1538 1.593196 TGAAGTCCTTCGCAAACAGG 58.407 50.000 2.82 0.00 42.28 4.00
1515 1547 7.945033 TTTGTTGCAAATAATGAAGTCCTTC 57.055 32.000 0.00 0.00 39.91 3.46
1531 1563 5.459536 TGTTACCTGCATATTTTGTTGCA 57.540 34.783 0.00 0.00 46.03 4.08
1532 1564 6.672836 GCATTGTTACCTGCATATTTTGTTGC 60.673 38.462 0.00 0.00 38.28 4.17
1535 1567 5.046735 TGGCATTGTTACCTGCATATTTTGT 60.047 36.000 8.79 0.00 40.18 2.83
1536 1568 5.417811 TGGCATTGTTACCTGCATATTTTG 58.582 37.500 8.79 0.00 40.18 2.44
1537 1569 5.674052 TGGCATTGTTACCTGCATATTTT 57.326 34.783 8.79 0.00 40.18 1.82
1557 1589 3.590824 GGCATCCCGTTGAGTTGG 58.409 61.111 0.00 0.00 0.00 3.77
1578 1610 0.673644 GTCTGTCATTGGGGGTGTCG 60.674 60.000 0.00 0.00 0.00 4.35
1579 1611 0.400213 TGTCTGTCATTGGGGGTGTC 59.600 55.000 0.00 0.00 0.00 3.67
1580 1612 0.110486 GTGTCTGTCATTGGGGGTGT 59.890 55.000 0.00 0.00 0.00 4.16
1583 1615 0.962356 GCAGTGTCTGTCATTGGGGG 60.962 60.000 0.00 0.00 34.89 5.40
1624 1656 2.997897 ACTGGAGGTGTCTCGGCC 60.998 66.667 0.00 0.00 40.85 6.13
1629 1661 1.528292 GACGCTGACTGGAGGTGTCT 61.528 60.000 0.00 0.00 37.46 3.41
1641 1673 1.803289 CCTCGATGTCTGACGCTGA 59.197 57.895 2.98 0.00 0.00 4.26
1647 1679 1.550327 AGAGTTGCCTCGATGTCTGA 58.450 50.000 0.00 0.00 42.86 3.27
1656 1688 4.051922 CGGTGATATGTTAGAGTTGCCTC 58.948 47.826 0.00 0.00 38.04 4.70
1657 1689 3.181465 CCGGTGATATGTTAGAGTTGCCT 60.181 47.826 0.00 0.00 0.00 4.75
1658 1690 3.131396 CCGGTGATATGTTAGAGTTGCC 58.869 50.000 0.00 0.00 0.00 4.52
1664 1696 2.882761 CGACCTCCGGTGATATGTTAGA 59.117 50.000 4.76 0.00 35.25 2.10
1699 1731 3.697542 TGGATGTCCTCTTAAATCGTCGA 59.302 43.478 0.00 0.00 36.82 4.20
1705 1737 6.552008 TGGTTTCTTGGATGTCCTCTTAAAT 58.448 36.000 0.09 0.00 36.82 1.40
1708 1740 5.576563 TTGGTTTCTTGGATGTCCTCTTA 57.423 39.130 0.09 0.00 36.82 2.10
1713 1745 5.069119 ACTTTCTTTGGTTTCTTGGATGTCC 59.931 40.000 0.00 0.00 0.00 4.02
1718 1750 8.533569 AATCTTACTTTCTTTGGTTTCTTGGA 57.466 30.769 0.00 0.00 0.00 3.53
1741 1773 2.202623 GACGCCTCGCACTCGAAT 60.203 61.111 0.00 0.00 44.98 3.34
1771 1803 7.838771 TGTATTGTCTTCTGAATCTGTGATG 57.161 36.000 0.00 0.00 0.00 3.07
1789 1821 6.453943 TGGTGAATTGACCATGTTTGTATTG 58.546 36.000 13.25 0.00 41.30 1.90
1799 1831 3.157087 GTGGAACTGGTGAATTGACCAT 58.843 45.455 17.59 3.34 45.19 3.55
1806 1838 5.422012 GGATTAAATGGTGGAACTGGTGAAT 59.578 40.000 0.00 0.00 36.74 2.57
1817 1849 2.830923 TGTTGGCAGGATTAAATGGTGG 59.169 45.455 0.00 0.00 0.00 4.61
1823 1855 3.260380 CCCATTGTGTTGGCAGGATTAAA 59.740 43.478 0.00 0.00 35.29 1.52
1829 1861 0.251297 TCTCCCATTGTGTTGGCAGG 60.251 55.000 0.00 0.00 35.29 4.85
1836 1868 2.224523 ACGTGACAATCTCCCATTGTGT 60.225 45.455 4.72 0.00 41.76 3.72
1841 1873 3.338249 CTTCAACGTGACAATCTCCCAT 58.662 45.455 0.00 0.00 0.00 4.00
1843 1875 2.076863 CCTTCAACGTGACAATCTCCC 58.923 52.381 0.00 0.00 0.00 4.30
1848 1880 2.774439 GTTGCCTTCAACGTGACAAT 57.226 45.000 0.00 0.00 42.55 2.71
1877 1909 3.762288 AGGCTGTCTAGAACGATGTTACA 59.238 43.478 0.00 0.00 0.00 2.41
1878 1910 4.142447 TGAGGCTGTCTAGAACGATGTTAC 60.142 45.833 0.00 0.00 0.00 2.50
1879 1911 4.014406 TGAGGCTGTCTAGAACGATGTTA 58.986 43.478 0.00 0.00 0.00 2.41
1887 1919 5.068460 GCTTCTCTTATGAGGCTGTCTAGAA 59.932 44.000 0.00 0.00 40.58 2.10
1898 1930 5.221283 TGCATCTCTCTGCTTCTCTTATGAG 60.221 44.000 0.00 0.00 42.75 2.90
1900 1932 4.946445 TGCATCTCTCTGCTTCTCTTATG 58.054 43.478 0.00 0.00 42.75 1.90
1921 1953 2.913578 TGCTTGCCTGCCCTGTTG 60.914 61.111 0.00 0.00 0.00 3.33
1922 1954 2.599578 CTGCTTGCCTGCCCTGTT 60.600 61.111 0.00 0.00 0.00 3.16
1924 1956 2.205152 AAACTGCTTGCCTGCCCTG 61.205 57.895 0.00 0.00 0.00 4.45
1927 1959 0.389426 CATCAAACTGCTTGCCTGCC 60.389 55.000 0.00 0.00 34.76 4.85
1940 1975 1.019278 GCGGCGGAACTCTCATCAAA 61.019 55.000 9.78 0.00 0.00 2.69
1944 1979 1.741770 GTTGCGGCGGAACTCTCAT 60.742 57.895 32.49 0.00 0.00 2.90
1969 2004 5.299279 CCCTGGTACAATGTCCATAATTGAC 59.701 44.000 3.32 0.00 38.70 3.18
2019 2054 1.869132 GTTGATGCAACATCCGCGC 60.869 57.895 0.00 0.00 43.09 6.86
2020 2055 4.365287 GTTGATGCAACATCCGCG 57.635 55.556 0.00 0.00 43.09 6.46
2090 2125 0.831307 GGGTGTCCATCAGGGTAGTC 59.169 60.000 0.00 0.00 38.11 2.59
2152 2187 0.032615 TTGACTTGTTGCAAGGGGGT 60.033 50.000 0.00 0.00 0.00 4.95
2174 2209 3.197983 GCAATACTAACCAGACTGGGACT 59.802 47.826 25.34 11.73 43.37 3.85
2182 2217 5.070446 CCTCATGGTAGCAATACTAACCAGA 59.930 44.000 0.00 0.00 37.83 3.86
2191 2226 3.973305 TGATGTCCCTCATGGTAGCAATA 59.027 43.478 0.00 0.00 36.83 1.90
2233 2268 3.124921 ATTCCAAAGTCGCCCGCG 61.125 61.111 0.00 0.00 41.35 6.46
2236 2271 2.007608 GTACTCATTCCAAAGTCGCCC 58.992 52.381 0.00 0.00 0.00 6.13
2274 2309 3.753272 GCATAACATGGGCTGTATCGAAT 59.247 43.478 0.00 0.00 36.98 3.34
2277 2312 1.460743 CGCATAACATGGGCTGTATCG 59.539 52.381 0.00 0.00 36.98 2.92
2278 2313 2.494059 ACGCATAACATGGGCTGTATC 58.506 47.619 0.00 0.00 46.03 2.24
2280 2315 2.285083 GAACGCATAACATGGGCTGTA 58.715 47.619 0.00 0.00 46.03 2.74
2286 2321 5.331902 AGAAAAATCGAACGCATAACATGG 58.668 37.500 0.00 0.00 0.00 3.66
2287 2322 6.676385 CAAGAAAAATCGAACGCATAACATG 58.324 36.000 0.00 0.00 0.00 3.21
2292 2327 4.678509 AGCAAGAAAAATCGAACGCATA 57.321 36.364 0.00 0.00 0.00 3.14
2298 2333 7.062371 TCGAAAACAAAAGCAAGAAAAATCGAA 59.938 29.630 0.00 0.00 31.16 3.71
2300 2335 6.691442 TCGAAAACAAAAGCAAGAAAAATCG 58.309 32.000 0.00 0.00 0.00 3.34
2302 2337 6.953189 CGTTCGAAAACAAAAGCAAGAAAAAT 59.047 30.769 0.00 0.00 34.93 1.82
2308 2343 3.175929 ACCGTTCGAAAACAAAAGCAAG 58.824 40.909 0.00 0.00 34.93 4.01
2315 2350 6.259608 TCCTTGTTTATACCGTTCGAAAACAA 59.740 34.615 16.76 16.76 43.77 2.83
2322 2357 4.150451 ACGTTTCCTTGTTTATACCGTTCG 59.850 41.667 0.00 0.00 0.00 3.95
2323 2358 5.177327 TGACGTTTCCTTGTTTATACCGTTC 59.823 40.000 0.00 0.00 0.00 3.95
2324 2359 5.055812 TGACGTTTCCTTGTTTATACCGTT 58.944 37.500 0.00 0.00 0.00 4.44
2326 2361 5.121142 ACATGACGTTTCCTTGTTTATACCG 59.879 40.000 0.00 0.00 0.00 4.02
2327 2362 6.072893 ACACATGACGTTTCCTTGTTTATACC 60.073 38.462 0.00 0.00 0.00 2.73
2328 2363 6.894828 ACACATGACGTTTCCTTGTTTATAC 58.105 36.000 0.00 0.00 0.00 1.47
2331 2366 5.821516 AACACATGACGTTTCCTTGTTTA 57.178 34.783 0.00 0.00 0.00 2.01
2332 2367 4.712122 AACACATGACGTTTCCTTGTTT 57.288 36.364 0.00 0.00 0.00 2.83
2338 2373 5.753744 TGTTTCATAACACATGACGTTTCC 58.246 37.500 0.00 0.00 39.29 3.13
2339 2374 5.851177 CCTGTTTCATAACACATGACGTTTC 59.149 40.000 0.00 0.00 39.29 2.78
2343 2378 3.751175 ACCCTGTTTCATAACACATGACG 59.249 43.478 0.00 0.00 39.29 4.35
2354 2391 4.159879 CGAGGTTAGTAGACCCTGTTTCAT 59.840 45.833 0.00 0.00 40.73 2.57
2368 2407 1.190178 GGTGGTGTCCCGAGGTTAGT 61.190 60.000 0.00 0.00 0.00 2.24
2386 2425 0.451783 GCTATGTGGAAAGGCGTTGG 59.548 55.000 0.00 0.00 0.00 3.77
2416 2455 2.359900 CCATTGCTGAGTTGGGTCTAC 58.640 52.381 0.00 0.00 0.00 2.59
2422 2461 1.214589 GCTGCCATTGCTGAGTTGG 59.785 57.895 0.00 0.00 38.61 3.77
2430 2469 2.177531 CACACGAGCTGCCATTGC 59.822 61.111 0.00 0.00 38.26 3.56
2434 2473 2.280119 GTCACACACGAGCTGCCA 60.280 61.111 0.00 0.00 0.00 4.92
2460 2499 3.560636 ACAGACCTTGTGCAACTAACT 57.439 42.857 0.00 0.00 38.99 2.24
2511 2550 1.380302 GACACAATCTGCCCCCACT 59.620 57.895 0.00 0.00 0.00 4.00
2516 2555 1.168714 GAGGTTGACACAATCTGCCC 58.831 55.000 1.90 0.00 0.00 5.36
2523 2562 1.748493 GGCTTGTTGAGGTTGACACAA 59.252 47.619 0.00 0.00 0.00 3.33
2562 2601 0.600782 TTTTCGGTGGCGGTGTAGAC 60.601 55.000 0.00 0.00 0.00 2.59
2566 2605 2.593436 CCTTTTCGGTGGCGGTGT 60.593 61.111 0.00 0.00 0.00 4.16
2616 2655 1.202440 AGACGGTACTGCGTCACAAAA 60.202 47.619 21.48 0.00 37.57 2.44
2624 2663 2.202440 CGGACAGACGGTACTGCG 60.202 66.667 0.23 0.00 41.06 5.18
2640 2679 3.755628 TTTCCCGACGCCCTCTCG 61.756 66.667 0.00 0.00 0.00 4.04
2679 2718 3.376218 GCCACTCATCTGCGAGAAT 57.624 52.632 0.00 0.00 36.47 2.40
2697 2736 5.679792 GGAAACTTACTTGTTTAACACTGCG 59.320 40.000 0.00 0.00 39.86 5.18
2732 2774 9.430623 TCATGCGATAATCTCCGAATAAAAATA 57.569 29.630 0.00 0.00 0.00 1.40
2735 2777 7.655732 TCTTCATGCGATAATCTCCGAATAAAA 59.344 33.333 0.00 0.00 0.00 1.52
2738 2780 6.267496 TCTTCATGCGATAATCTCCGAATA 57.733 37.500 0.00 0.00 0.00 1.75
2743 2785 6.162079 TCTTGATCTTCATGCGATAATCTCC 58.838 40.000 0.00 0.00 0.00 3.71
2744 2786 7.544915 TCATCTTGATCTTCATGCGATAATCTC 59.455 37.037 0.00 0.00 0.00 2.75
2746 2788 7.592439 TCATCTTGATCTTCATGCGATAATC 57.408 36.000 0.00 0.00 0.00 1.75
2747 2789 7.443272 TGTTCATCTTGATCTTCATGCGATAAT 59.557 33.333 0.00 0.00 0.00 1.28
2749 2791 6.282930 TGTTCATCTTGATCTTCATGCGATA 58.717 36.000 0.00 0.00 0.00 2.92
2787 2829 1.009829 CTGCGGAGACATTGGTAAGC 58.990 55.000 0.00 0.00 0.00 3.09
2792 2834 0.957395 AGTTGCTGCGGAGACATTGG 60.957 55.000 8.65 0.00 0.00 3.16
2799 2846 2.281761 AACCCAGTTGCTGCGGAG 60.282 61.111 0.00 0.00 0.00 4.63
2800 2847 2.594303 CAACCCAGTTGCTGCGGA 60.594 61.111 0.00 0.00 36.73 5.54
2802 2849 0.238289 CTAACAACCCAGTTGCTGCG 59.762 55.000 7.36 0.00 46.20 5.18
2831 2878 4.500887 GCGCCCATCAGTTCTATGTAACTA 60.501 45.833 0.00 0.00 37.61 2.24
2848 2895 0.107703 CTTCTTCAGTATGGCGCCCA 60.108 55.000 26.77 12.96 38.19 5.36
2912 2959 1.098050 GCTGGAACCTTCGCATGAAT 58.902 50.000 0.00 0.00 32.61 2.57
2919 2966 0.532573 TCTAGCTGCTGGAACCTTCG 59.467 55.000 13.65 0.00 0.00 3.79
2924 2971 3.258971 ACATTCTCTAGCTGCTGGAAC 57.741 47.619 16.64 0.00 0.00 3.62
2936 2983 5.813513 ATTTTCTTGCCCAAACATTCTCT 57.186 34.783 0.00 0.00 0.00 3.10
2954 3001 5.110814 TCCAGGATGAATCACCGTATTTT 57.889 39.130 0.00 0.00 39.69 1.82
3007 3054 6.890663 TGCTGATGAAAGAAGTTTTTGTTG 57.109 33.333 0.00 0.00 0.00 3.33
3016 3063 5.327091 CCGTAACATTGCTGATGAAAGAAG 58.673 41.667 7.50 0.00 39.15 2.85
3019 3066 3.689161 TCCCGTAACATTGCTGATGAAAG 59.311 43.478 7.50 0.00 39.15 2.62
3023 3070 2.549754 GGATCCCGTAACATTGCTGATG 59.450 50.000 0.00 0.00 41.71 3.07
3026 3073 1.308998 GGGATCCCGTAACATTGCTG 58.691 55.000 17.02 0.00 0.00 4.41
3039 3088 0.334676 TGGTTCACCAATGGGGATCC 59.665 55.000 21.81 21.81 43.39 3.36
3040 3089 3.998560 TGGTTCACCAATGGGGATC 57.001 52.632 4.48 4.22 44.35 3.36
3050 3099 7.696453 CGACAAAAATATTAGACATGGTTCACC 59.304 37.037 0.00 0.00 0.00 4.02
3057 3106 7.058354 GCGCATACGACAAAAATATTAGACATG 59.942 37.037 0.30 0.00 43.93 3.21
3085 3498 1.842381 GCTCTACAGGGTTGGCCAGT 61.842 60.000 5.11 2.01 36.17 4.00
3093 3506 1.119574 AACACGTGGCTCTACAGGGT 61.120 55.000 21.57 0.00 0.00 4.34
3114 3527 1.800032 GAATGAAATCACCGCCGCA 59.200 52.632 0.00 0.00 0.00 5.69
3137 3550 4.212636 ACAAAAATGTTCCTTCCGTAGTCG 59.787 41.667 0.00 0.00 0.00 4.18
3145 3558 3.559655 GTGGCCAACAAAAATGTTCCTTC 59.440 43.478 7.24 0.00 0.00 3.46
3206 3619 1.965935 AAATGCAAAAAGGTGGGTGC 58.034 45.000 0.00 0.00 37.51 5.01
3208 3621 4.227864 TGAAAAATGCAAAAAGGTGGGT 57.772 36.364 0.00 0.00 0.00 4.51
3217 3630 9.932699 CAATCACAGTTAAATGAAAAATGCAAA 57.067 25.926 10.35 0.00 0.00 3.68
3220 3633 8.763356 TGTCAATCACAGTTAAATGAAAAATGC 58.237 29.630 10.35 0.00 0.00 3.56
3237 3650 6.249260 GCATTTGATCGTTTAGTGTCAATCAC 59.751 38.462 0.00 0.00 46.46 3.06
3238 3651 6.314018 GCATTTGATCGTTTAGTGTCAATCA 58.686 36.000 0.00 0.00 31.39 2.57
3239 3652 5.739161 GGCATTTGATCGTTTAGTGTCAATC 59.261 40.000 0.00 0.00 31.39 2.67
3244 3657 3.331150 TCGGCATTTGATCGTTTAGTGT 58.669 40.909 0.00 0.00 0.00 3.55
3245 3658 4.335082 TTCGGCATTTGATCGTTTAGTG 57.665 40.909 0.00 0.00 0.00 2.74
3248 3661 3.690422 GCATTCGGCATTTGATCGTTTA 58.310 40.909 0.00 0.00 43.97 2.01
3261 3675 4.510038 AATTATGAAGATGGCATTCGGC 57.490 40.909 0.00 0.00 43.74 5.54
3264 3678 7.489113 ACGTGAAAAATTATGAAGATGGCATTC 59.511 33.333 0.00 0.00 0.00 2.67
3265 3679 7.322664 ACGTGAAAAATTATGAAGATGGCATT 58.677 30.769 0.00 0.00 0.00 3.56
3266 3680 6.866480 ACGTGAAAAATTATGAAGATGGCAT 58.134 32.000 0.00 0.00 0.00 4.40
3273 3687 9.463443 AAAGGAAAGACGTGAAAAATTATGAAG 57.537 29.630 0.00 0.00 0.00 3.02
3280 3696 6.127451 ACCAGAAAAGGAAAGACGTGAAAAAT 60.127 34.615 0.00 0.00 0.00 1.82
3286 3702 2.943033 ACACCAGAAAAGGAAAGACGTG 59.057 45.455 0.00 0.00 0.00 4.49
3287 3703 3.277142 ACACCAGAAAAGGAAAGACGT 57.723 42.857 0.00 0.00 0.00 4.34
3288 3704 4.628074 TCTACACCAGAAAAGGAAAGACG 58.372 43.478 0.00 0.00 0.00 4.18
3295 3711 5.772521 CAAAACCATCTACACCAGAAAAGG 58.227 41.667 0.00 0.00 36.67 3.11
3296 3712 5.222631 GCAAAACCATCTACACCAGAAAAG 58.777 41.667 0.00 0.00 36.67 2.27
3301 3717 2.513753 TGGCAAAACCATCTACACCAG 58.486 47.619 0.00 0.00 46.36 4.00
3327 3745 2.094757 TAGACCAGGCGTGTGTGTGG 62.095 60.000 5.57 0.00 36.05 4.17
3432 3850 6.018425 CGTCAGCTATCTTTATGTGCTCATTT 60.018 38.462 6.57 0.00 35.70 2.32
3468 3886 1.065401 GCTATGCAAACCATTAGCGCA 59.935 47.619 11.47 0.00 35.34 6.09
3519 3937 1.341080 ACCAATTCTGCCACCCTTTG 58.659 50.000 0.00 0.00 0.00 2.77
3549 3967 3.569200 GACCCAAGGGCCTGTGGTC 62.569 68.421 28.84 28.84 38.78 4.02
3555 3973 3.971702 GTGCAGACCCAAGGGCCT 61.972 66.667 0.00 0.00 39.32 5.19
3572 3990 1.883084 GCATGAAGCTCGTACCGGG 60.883 63.158 6.32 0.00 41.15 5.73
3590 4008 4.286297 TGAGGAAGGTGTTTCTATGTGG 57.714 45.455 0.00 0.00 36.03 4.17
3596 4014 4.412528 GGGGTATATGAGGAAGGTGTTTCT 59.587 45.833 0.00 0.00 36.03 2.52
3598 4016 3.462205 GGGGGTATATGAGGAAGGTGTTT 59.538 47.826 0.00 0.00 0.00 2.83
3608 4028 5.940470 GCTCACTAAAATGGGGGTATATGAG 59.060 44.000 0.00 0.00 34.36 2.90
3610 4030 5.630121 TGCTCACTAAAATGGGGGTATATG 58.370 41.667 0.00 0.00 0.00 1.78
3611 4031 5.922960 TGCTCACTAAAATGGGGGTATAT 57.077 39.130 0.00 0.00 0.00 0.86
3613 4033 4.814224 ATGCTCACTAAAATGGGGGTAT 57.186 40.909 0.00 0.00 0.00 2.73
3614 4034 4.601406 AATGCTCACTAAAATGGGGGTA 57.399 40.909 0.00 0.00 0.00 3.69
3617 4037 4.392754 GCAAAAATGCTCACTAAAATGGGG 59.607 41.667 0.00 0.00 0.00 4.96
3618 4038 4.091800 CGCAAAAATGCTCACTAAAATGGG 59.908 41.667 0.00 0.00 0.00 4.00
3620 4040 6.144402 AGTTCGCAAAAATGCTCACTAAAATG 59.856 34.615 0.00 0.00 0.00 2.32
3621 4041 6.215845 AGTTCGCAAAAATGCTCACTAAAAT 58.784 32.000 0.00 0.00 0.00 1.82
3626 4046 3.563808 TGTAGTTCGCAAAAATGCTCACT 59.436 39.130 0.00 3.66 0.00 3.41
3627 4047 3.884169 TGTAGTTCGCAAAAATGCTCAC 58.116 40.909 0.00 0.00 0.00 3.51
3628 4048 4.764679 ATGTAGTTCGCAAAAATGCTCA 57.235 36.364 0.00 0.00 0.00 4.26
3630 4050 7.857389 CACATATATGTAGTTCGCAAAAATGCT 59.143 33.333 17.86 0.00 39.39 3.79
3631 4051 7.643764 ACACATATATGTAGTTCGCAAAAATGC 59.356 33.333 17.86 0.00 39.39 3.56
3633 4053 7.643764 GCACACATATATGTAGTTCGCAAAAAT 59.356 33.333 17.86 0.00 39.39 1.82
3634 4054 6.964370 GCACACATATATGTAGTTCGCAAAAA 59.036 34.615 17.86 0.00 39.39 1.94
3639 4059 4.055360 TGGCACACATATATGTAGTTCGC 58.945 43.478 17.86 16.01 39.39 4.70
3641 4061 7.065803 ACAAGTTGGCACACATATATGTAGTTC 59.934 37.037 17.86 12.15 39.29 3.01
3642 4062 6.884295 ACAAGTTGGCACACATATATGTAGTT 59.116 34.615 17.86 7.96 39.29 2.24
3645 4065 7.695480 AAACAAGTTGGCACACATATATGTA 57.305 32.000 17.86 0.00 39.29 2.29
3659 4079 3.803778 GGATGCACTGAAAAACAAGTTGG 59.196 43.478 7.96 0.00 0.00 3.77
3663 4083 3.054878 GCTGGATGCACTGAAAAACAAG 58.945 45.455 0.00 0.00 42.31 3.16
3667 4087 0.597568 CCGCTGGATGCACTGAAAAA 59.402 50.000 0.00 0.00 43.06 1.94
3688 4109 1.722464 TGCGTAATGTAGTGCAACGAC 59.278 47.619 8.90 1.49 45.86 4.34
3693 4114 1.083489 GCCTTGCGTAATGTAGTGCA 58.917 50.000 0.00 0.00 35.15 4.57
3736 4157 1.409427 GCTTACTGGCGATAGTGTCCT 59.591 52.381 2.66 0.00 39.35 3.85
3744 4165 4.101119 ACTTTAGGTATGCTTACTGGCGAT 59.899 41.667 9.39 0.00 34.52 4.58
3747 4168 6.404403 GGAAAACTTTAGGTATGCTTACTGGC 60.404 42.308 9.39 0.00 0.00 4.85
3750 4171 6.011893 AGGGGAAAACTTTAGGTATGCTTACT 60.012 38.462 9.39 0.00 0.00 2.24
3841 4264 6.781014 TCGAACTCATCCCCTATTTGTATAGT 59.219 38.462 0.00 0.00 33.29 2.12
3842 4265 7.091443 GTCGAACTCATCCCCTATTTGTATAG 58.909 42.308 0.00 0.00 34.67 1.31
3843 4266 6.014840 GGTCGAACTCATCCCCTATTTGTATA 60.015 42.308 0.00 0.00 0.00 1.47
3849 4273 2.759355 TGGTCGAACTCATCCCCTATT 58.241 47.619 0.33 0.00 0.00 1.73
3906 4330 1.837947 TTGCCCAATGTTGCCAGCT 60.838 52.632 0.00 0.00 0.00 4.24
3918 4342 0.037590 ATTTCGCTGGTAGTTGCCCA 59.962 50.000 0.00 0.00 0.00 5.36
3927 4351 3.578688 GCAGATTTTGAATTTCGCTGGT 58.421 40.909 0.00 0.00 0.00 4.00
3930 4354 3.507233 TCTGGCAGATTTTGAATTTCGCT 59.493 39.130 14.43 0.00 0.00 4.93
3970 4394 0.318955 GCGAACATGCCACTTTGCTT 60.319 50.000 0.00 0.00 0.00 3.91
3989 4413 3.864583 GTCTCATGAGAGTAGCTTTGCAG 59.135 47.826 25.76 0.00 42.66 4.41
3990 4414 3.259123 TGTCTCATGAGAGTAGCTTTGCA 59.741 43.478 25.76 13.44 42.66 4.08
3995 4419 3.023119 CCAGTGTCTCATGAGAGTAGCT 58.977 50.000 25.76 16.76 42.66 3.32
3997 4421 3.761218 ACACCAGTGTCTCATGAGAGTAG 59.239 47.826 25.76 14.93 40.24 2.57
3998 4422 3.507622 CACACCAGTGTCTCATGAGAGTA 59.492 47.826 25.76 14.85 42.83 2.59
4014 4438 2.708861 ACATTTCCAGTAGGACACACCA 59.291 45.455 0.00 0.00 45.73 4.17
4017 4441 2.708861 ACCACATTTCCAGTAGGACACA 59.291 45.455 0.00 0.00 45.73 3.72
4021 4445 3.392947 TGAACACCACATTTCCAGTAGGA 59.607 43.478 0.00 0.00 43.93 2.94
4033 4459 1.205893 GGGTTTTTGCTGAACACCACA 59.794 47.619 9.77 0.00 0.00 4.17
4039 4465 1.408702 TCTGCTGGGTTTTTGCTGAAC 59.591 47.619 0.00 0.00 33.10 3.18
4051 4477 1.584380 GCACTTTGCTCTCTGCTGGG 61.584 60.000 0.00 0.00 40.96 4.45
4052 4478 1.874562 GCACTTTGCTCTCTGCTGG 59.125 57.895 0.00 0.00 40.96 4.85
4055 4481 2.866028 CCGCACTTTGCTCTCTGC 59.134 61.111 0.00 0.00 42.25 4.26
4057 4483 0.607489 ATTGCCGCACTTTGCTCTCT 60.607 50.000 0.00 0.00 42.25 3.10
4064 4490 0.244450 CATGGTGATTGCCGCACTTT 59.756 50.000 0.00 0.00 36.53 2.66
4067 4493 1.137404 GTCATGGTGATTGCCGCAC 59.863 57.895 0.00 0.00 35.56 5.34
4071 4497 1.392589 ATTCGGTCATGGTGATTGCC 58.607 50.000 0.00 0.00 0.00 4.52
4085 4511 3.120095 GGTTTGTCGGGAACTAAATTCGG 60.120 47.826 0.00 0.00 38.31 4.30
4109 4535 3.118542 CACTGTCTCTTTGGCAAAAAGC 58.881 45.455 14.43 7.35 44.65 3.51
4119 4545 4.439057 TGCGTAAGAAACACTGTCTCTTT 58.561 39.130 3.07 0.00 43.02 2.52
4126 4552 2.734606 TCCGAATGCGTAAGAAACACTG 59.265 45.455 0.00 0.00 43.02 3.66
4128 4554 3.732943 CTTCCGAATGCGTAAGAAACAC 58.267 45.455 0.00 0.00 35.74 3.32
4129 4555 2.158841 GCTTCCGAATGCGTAAGAAACA 59.841 45.455 1.99 0.00 35.74 2.83
4130 4556 2.415512 AGCTTCCGAATGCGTAAGAAAC 59.584 45.455 1.99 0.00 35.74 2.78
4138 4565 2.619013 AAAAAGAGCTTCCGAATGCG 57.381 45.000 0.00 0.00 37.24 4.73
4195 4622 3.505464 AAACTACATCGTTAGAGCGCT 57.495 42.857 11.27 11.27 0.00 5.92
4196 4623 4.349501 ACTAAACTACATCGTTAGAGCGC 58.650 43.478 0.00 0.00 0.00 5.92
4197 4624 5.229469 CCAACTAAACTACATCGTTAGAGCG 59.771 44.000 0.00 0.00 0.00 5.03
4199 4626 8.752766 TTTCCAACTAAACTACATCGTTAGAG 57.247 34.615 0.00 0.00 0.00 2.43
4200 4627 9.146984 CATTTCCAACTAAACTACATCGTTAGA 57.853 33.333 0.00 0.00 0.00 2.10
4202 4629 8.836268 ACATTTCCAACTAAACTACATCGTTA 57.164 30.769 0.00 0.00 0.00 3.18
4204 4631 7.739498 AACATTTCCAACTAAACTACATCGT 57.261 32.000 0.00 0.00 0.00 3.73
4205 4632 8.655378 GAAACATTTCCAACTAAACTACATCG 57.345 34.615 0.00 0.00 0.00 3.84
4236 4664 4.463209 ACAACACGCAGATAATTTTGTCG 58.537 39.130 0.00 0.00 0.00 4.35
4267 4695 4.218200 TCGAACGGTACTAGTCCATTTGAA 59.782 41.667 0.00 0.00 0.00 2.69
4296 4724 7.872483 ACCAATGATGCGATTTAAAGTTTCTTT 59.128 29.630 0.00 0.59 0.00 2.52
4297 4725 7.378181 ACCAATGATGCGATTTAAAGTTTCTT 58.622 30.769 0.00 0.00 0.00 2.52
4298 4726 6.924111 ACCAATGATGCGATTTAAAGTTTCT 58.076 32.000 0.00 0.00 0.00 2.52
4299 4727 6.806249 TGACCAATGATGCGATTTAAAGTTTC 59.194 34.615 0.00 0.00 0.00 2.78
4301 4729 6.266168 TGACCAATGATGCGATTTAAAGTT 57.734 33.333 0.00 0.00 0.00 2.66
4303 4731 5.688621 CCATGACCAATGATGCGATTTAAAG 59.311 40.000 0.00 0.00 38.72 1.85
4307 4735 3.289836 TCCATGACCAATGATGCGATTT 58.710 40.909 0.00 0.00 38.72 2.17
4309 4737 2.643995 TCCATGACCAATGATGCGAT 57.356 45.000 0.00 0.00 38.72 4.58
4311 4739 3.507103 TTTTCCATGACCAATGATGCG 57.493 42.857 0.00 0.00 38.72 4.73
4329 4757 2.350772 CGTTTGCCGATCTCTGCTTTTT 60.351 45.455 0.00 0.00 39.56 1.94
4340 4770 0.889186 AACTTCCTGCGTTTGCCGAT 60.889 50.000 0.00 0.00 41.78 4.18
4343 4773 1.285950 GGAACTTCCTGCGTTTGCC 59.714 57.895 0.00 0.00 41.78 4.52
4349 4779 1.901650 GCAGTTCGGAACTTCCTGCG 61.902 60.000 20.27 9.57 40.46 5.18
4354 4784 0.599204 TGACGGCAGTTCGGAACTTC 60.599 55.000 20.27 15.64 40.46 3.01
4381 4812 6.360329 CCACAAAAACAGTCTGTATCGTAAC 58.640 40.000 5.77 0.00 0.00 2.50
4440 4875 6.484977 TGTTTTCAATGCCCCATTTAGTTTTC 59.515 34.615 0.00 0.00 31.05 2.29
4450 4885 2.122768 ACCTTTGTTTTCAATGCCCCA 58.877 42.857 0.00 0.00 39.70 4.96
4476 4911 1.010419 GGCTCAAATGCGTGCAAAGG 61.010 55.000 0.00 0.00 0.00 3.11
4478 4913 1.371512 CGGCTCAAATGCGTGCAAA 60.372 52.632 0.00 0.00 0.00 3.68
4489 4924 3.459823 AGCAGACTGACGGCTCAA 58.540 55.556 6.65 0.00 46.10 3.02
4514 4949 1.734465 GATCTTCACCCTCTGTTTGCG 59.266 52.381 0.00 0.00 0.00 4.85
4527 4962 1.066858 GCTCGGTCTTGGTGATCTTCA 60.067 52.381 0.00 0.00 0.00 3.02
4538 4973 1.209747 GGTAGGGAAATGCTCGGTCTT 59.790 52.381 0.00 0.00 0.00 3.01
4542 4977 0.474184 ATGGGTAGGGAAATGCTCGG 59.526 55.000 0.00 0.00 0.00 4.63
4543 4978 1.949525 CAATGGGTAGGGAAATGCTCG 59.050 52.381 0.00 0.00 0.00 5.03
4546 4981 2.099098 CGTTCAATGGGTAGGGAAATGC 59.901 50.000 0.00 0.00 0.00 3.56
4552 4987 0.251916 TGCTCGTTCAATGGGTAGGG 59.748 55.000 0.00 0.00 0.00 3.53
4592 5028 1.362355 GGCAACCTTTTCACCACCG 59.638 57.895 0.00 0.00 0.00 4.94
4670 5107 2.352805 CACCCCAGAACCCTCTGC 59.647 66.667 0.00 0.00 46.76 4.26
4675 5112 1.518367 TCATATCCACCCCAGAACCC 58.482 55.000 0.00 0.00 0.00 4.11
4676 5113 3.202151 TCTTTCATATCCACCCCAGAACC 59.798 47.826 0.00 0.00 0.00 3.62
4678 5115 4.625324 CGTTCTTTCATATCCACCCCAGAA 60.625 45.833 0.00 0.00 0.00 3.02
4680 5117 3.206150 CGTTCTTTCATATCCACCCCAG 58.794 50.000 0.00 0.00 0.00 4.45
4684 5121 3.606687 ACACCGTTCTTTCATATCCACC 58.393 45.455 0.00 0.00 0.00 4.61
4687 5124 4.094442 GGACAACACCGTTCTTTCATATCC 59.906 45.833 0.00 0.00 0.00 2.59
4689 5126 4.906618 AGGACAACACCGTTCTTTCATAT 58.093 39.130 0.00 0.00 34.73 1.78
4693 5130 2.289820 GGAAGGACAACACCGTTCTTTC 59.710 50.000 0.00 0.00 34.73 2.62
4705 5142 3.496160 GCAACTTAGGTGAGGAAGGACAA 60.496 47.826 0.00 0.00 0.00 3.18
4713 5150 1.347707 TGTGGAGCAACTTAGGTGAGG 59.652 52.381 0.00 0.00 0.00 3.86
4714 5151 2.839486 TGTGGAGCAACTTAGGTGAG 57.161 50.000 0.00 0.00 0.00 3.51
4721 5158 2.034879 CGCCGATGTGGAGCAACTT 61.035 57.895 0.00 0.00 42.00 2.66
4736 5173 2.485122 CAATCTCAAACCGGCGCC 59.515 61.111 19.07 19.07 0.00 6.53
4781 5218 5.277779 CCAACGAAAAATGTTCAGTGAGCTA 60.278 40.000 8.54 0.00 0.00 3.32
4791 5228 3.317993 CCTCTGTCCCAACGAAAAATGTT 59.682 43.478 0.00 0.00 0.00 2.71
4792 5229 2.884639 CCTCTGTCCCAACGAAAAATGT 59.115 45.455 0.00 0.00 0.00 2.71
4799 5236 1.911766 GGTCCCTCTGTCCCAACGA 60.912 63.158 0.00 0.00 0.00 3.85
4800 5237 2.663196 GGTCCCTCTGTCCCAACG 59.337 66.667 0.00 0.00 0.00 4.10
4809 5246 2.039624 ACCTGCATCGGTCCCTCT 59.960 61.111 0.00 0.00 29.14 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.