Multiple sequence alignment - TraesCS2A01G076200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G076200 chr2A 100.000 2717 0 0 1 2717 34095546 34098262 0.000000e+00 5018
1 TraesCS2A01G076200 chr2A 84.564 1043 125 16 736 1763 34152396 34151375 0.000000e+00 1002
2 TraesCS2A01G076200 chr2B 88.300 1906 160 41 690 2573 52624960 52626824 0.000000e+00 2226
3 TraesCS2A01G076200 chr2B 88.701 1416 124 20 777 2167 52340515 52339111 0.000000e+00 1696
4 TraesCS2A01G076200 chr2B 87.618 638 64 4 1 633 52616720 52617347 0.000000e+00 726
5 TraesCS2A01G076200 chr2B 82.261 513 60 15 735 1233 52683496 52683001 5.410000e-112 414
6 TraesCS2A01G076200 chr2B 85.878 262 24 9 2317 2573 52338961 52338708 1.600000e-67 267
7 TraesCS2A01G076200 chr2D 91.364 1378 83 12 710 2068 32035235 32036595 0.000000e+00 1853
8 TraesCS2A01G076200 chr2D 85.630 1023 113 14 741 1744 32071964 32070957 0.000000e+00 1044
9 TraesCS2A01G076200 chr2D 83.158 475 52 15 2118 2580 32036599 32037057 2.520000e-110 409
10 TraesCS2A01G076200 chr2D 98.347 121 2 0 2597 2717 32037042 32037162 2.120000e-51 213
11 TraesCS2A01G076200 chrUn 75.610 246 53 6 429 672 102008470 102008230 6.150000e-22 115
12 TraesCS2A01G076200 chrUn 74.576 236 54 5 429 662 102030099 102029868 6.190000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G076200 chr2A 34095546 34098262 2716 False 5018.0 5018 100.000000 1 2717 1 chr2A.!!$F1 2716
1 TraesCS2A01G076200 chr2A 34151375 34152396 1021 True 1002.0 1002 84.564000 736 1763 1 chr2A.!!$R1 1027
2 TraesCS2A01G076200 chr2B 52624960 52626824 1864 False 2226.0 2226 88.300000 690 2573 1 chr2B.!!$F2 1883
3 TraesCS2A01G076200 chr2B 52338708 52340515 1807 True 981.5 1696 87.289500 777 2573 2 chr2B.!!$R2 1796
4 TraesCS2A01G076200 chr2B 52616720 52617347 627 False 726.0 726 87.618000 1 633 1 chr2B.!!$F1 632
5 TraesCS2A01G076200 chr2D 32070957 32071964 1007 True 1044.0 1044 85.630000 741 1744 1 chr2D.!!$R1 1003
6 TraesCS2A01G076200 chr2D 32035235 32037162 1927 False 825.0 1853 90.956333 710 2717 3 chr2D.!!$F1 2007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.034186 GCATCCCTCAATGGTGGACA 60.034 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2107 0.109689 GAAGGTGAGACGACCGTCAG 60.11 60.0 22.26 0.04 46.76 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.290464 CAAGACGATAGAGGAGACGGT 58.710 52.381 0.00 0.00 41.38 4.83
23 24 3.464907 CAAGACGATAGAGGAGACGGTA 58.535 50.000 0.00 0.00 41.38 4.02
24 25 4.066490 CAAGACGATAGAGGAGACGGTAT 58.934 47.826 0.00 0.00 41.38 2.73
48 49 0.771755 GGTCCCCACTTTCCAACTCT 59.228 55.000 0.00 0.00 0.00 3.24
57 58 4.440112 CCACTTTCCAACTCTTGAACAACC 60.440 45.833 0.00 0.00 0.00 3.77
62 63 2.383855 CAACTCTTGAACAACCCCCAA 58.616 47.619 0.00 0.00 0.00 4.12
72 73 0.960364 CAACCCCCAAGTCCATGTCG 60.960 60.000 0.00 0.00 0.00 4.35
85 86 0.395686 CATGTCGGGCCAGATCTGAT 59.604 55.000 24.62 4.64 0.00 2.90
99 100 1.301558 CTGATCTGCATCTCCCCGC 60.302 63.158 0.00 0.00 0.00 6.13
147 148 4.717629 CGCTGCCACCGAACGAGA 62.718 66.667 0.00 0.00 0.00 4.04
148 149 2.811317 GCTGCCACCGAACGAGAG 60.811 66.667 0.00 0.00 0.00 3.20
149 150 2.125912 CTGCCACCGAACGAGAGG 60.126 66.667 0.00 0.00 0.00 3.69
150 151 4.373116 TGCCACCGAACGAGAGGC 62.373 66.667 13.97 13.97 45.41 4.70
151 152 4.373116 GCCACCGAACGAGAGGCA 62.373 66.667 15.23 0.00 44.59 4.75
152 153 2.342279 CCACCGAACGAGAGGCAA 59.658 61.111 0.00 0.00 0.00 4.52
153 154 1.738099 CCACCGAACGAGAGGCAAG 60.738 63.158 0.00 0.00 0.00 4.01
154 155 1.738099 CACCGAACGAGAGGCAAGG 60.738 63.158 0.00 0.00 0.00 3.61
155 156 1.906824 ACCGAACGAGAGGCAAGGA 60.907 57.895 0.00 0.00 0.00 3.36
156 157 1.258445 ACCGAACGAGAGGCAAGGAT 61.258 55.000 0.00 0.00 0.00 3.24
157 158 0.807667 CCGAACGAGAGGCAAGGATG 60.808 60.000 0.00 0.00 0.00 3.51
191 192 4.567195 TGGTGACAGAGCATCCCT 57.433 55.556 0.00 0.00 33.66 4.20
192 193 2.290847 TGGTGACAGAGCATCCCTC 58.709 57.895 0.00 0.00 41.07 4.30
193 194 0.545071 TGGTGACAGAGCATCCCTCA 60.545 55.000 0.00 0.00 43.31 3.86
194 195 0.615331 GGTGACAGAGCATCCCTCAA 59.385 55.000 0.00 0.00 43.31 3.02
195 196 1.211457 GGTGACAGAGCATCCCTCAAT 59.789 52.381 0.00 0.00 43.31 2.57
196 197 2.286872 GTGACAGAGCATCCCTCAATG 58.713 52.381 0.00 0.00 43.31 2.82
197 198 1.211212 TGACAGAGCATCCCTCAATGG 59.789 52.381 0.00 0.00 43.31 3.16
198 199 1.211457 GACAGAGCATCCCTCAATGGT 59.789 52.381 0.00 0.00 43.31 3.55
199 200 1.064906 ACAGAGCATCCCTCAATGGTG 60.065 52.381 0.00 0.00 43.31 4.17
200 201 0.549950 AGAGCATCCCTCAATGGTGG 59.450 55.000 0.00 0.00 43.31 4.61
201 202 0.548031 GAGCATCCCTCAATGGTGGA 59.452 55.000 0.00 0.00 40.45 4.02
202 203 0.257039 AGCATCCCTCAATGGTGGAC 59.743 55.000 0.00 0.00 36.09 4.02
203 204 0.034186 GCATCCCTCAATGGTGGACA 60.034 55.000 0.00 0.00 0.00 4.02
204 205 2.020694 GCATCCCTCAATGGTGGACAG 61.021 57.143 0.00 0.00 0.00 3.51
205 206 1.561076 CATCCCTCAATGGTGGACAGA 59.439 52.381 0.00 0.00 0.00 3.41
206 207 1.279496 TCCCTCAATGGTGGACAGAG 58.721 55.000 0.00 0.00 0.00 3.35
207 208 0.393537 CCCTCAATGGTGGACAGAGC 60.394 60.000 0.00 0.00 0.00 4.09
208 209 0.617413 CCTCAATGGTGGACAGAGCT 59.383 55.000 0.00 0.00 0.00 4.09
209 210 1.678123 CCTCAATGGTGGACAGAGCTG 60.678 57.143 0.00 0.00 0.00 4.24
210 211 0.325933 TCAATGGTGGACAGAGCTGG 59.674 55.000 0.00 0.00 34.19 4.85
211 212 0.679002 CAATGGTGGACAGAGCTGGG 60.679 60.000 0.00 0.00 34.19 4.45
212 213 0.842030 AATGGTGGACAGAGCTGGGA 60.842 55.000 0.00 0.00 34.19 4.37
213 214 0.842030 ATGGTGGACAGAGCTGGGAA 60.842 55.000 0.00 0.00 34.19 3.97
214 215 1.059584 TGGTGGACAGAGCTGGGAAA 61.060 55.000 0.00 0.00 34.19 3.13
215 216 0.110486 GGTGGACAGAGCTGGGAAAA 59.890 55.000 0.00 0.00 34.19 2.29
216 217 1.528129 GTGGACAGAGCTGGGAAAAG 58.472 55.000 0.00 0.00 34.19 2.27
217 218 1.140312 TGGACAGAGCTGGGAAAAGT 58.860 50.000 0.00 0.00 34.19 2.66
218 219 2.038557 GTGGACAGAGCTGGGAAAAGTA 59.961 50.000 0.00 0.00 34.19 2.24
219 220 2.038557 TGGACAGAGCTGGGAAAAGTAC 59.961 50.000 0.00 0.00 34.19 2.73
220 221 2.338500 GACAGAGCTGGGAAAAGTACG 58.662 52.381 0.00 0.00 34.19 3.67
221 222 1.002087 ACAGAGCTGGGAAAAGTACGG 59.998 52.381 0.00 0.00 34.19 4.02
222 223 0.036294 AGAGCTGGGAAAAGTACGGC 60.036 55.000 0.00 0.00 36.77 5.68
223 224 1.002502 AGCTGGGAAAAGTACGGCC 60.003 57.895 0.00 0.00 37.20 6.13
224 225 2.044555 GCTGGGAAAAGTACGGCCC 61.045 63.158 0.00 8.01 41.08 5.80
225 226 1.378119 CTGGGAAAAGTACGGCCCC 60.378 63.158 0.00 9.75 39.93 5.80
226 227 1.848886 CTGGGAAAAGTACGGCCCCT 61.849 60.000 13.95 0.00 39.93 4.79
227 228 1.077930 GGGAAAAGTACGGCCCCTC 60.078 63.158 0.00 0.00 34.39 4.30
228 229 1.449070 GGAAAAGTACGGCCCCTCG 60.449 63.158 0.00 0.00 0.00 4.63
229 230 1.593265 GAAAAGTACGGCCCCTCGA 59.407 57.895 0.00 0.00 0.00 4.04
230 231 0.738762 GAAAAGTACGGCCCCTCGAC 60.739 60.000 0.00 0.00 0.00 4.20
231 232 2.496828 AAAAGTACGGCCCCTCGACG 62.497 60.000 0.00 0.00 0.00 5.12
232 233 4.729918 AGTACGGCCCCTCGACGT 62.730 66.667 0.00 3.47 43.88 4.34
233 234 4.185059 GTACGGCCCCTCGACGTC 62.185 72.222 5.18 5.18 41.53 4.34
234 235 4.415150 TACGGCCCCTCGACGTCT 62.415 66.667 14.70 0.00 41.53 4.18
238 239 3.827898 GCCCCTCGACGTCTCCTG 61.828 72.222 14.70 0.00 0.00 3.86
239 240 3.827898 CCCCTCGACGTCTCCTGC 61.828 72.222 14.70 0.00 0.00 4.85
240 241 3.062466 CCCTCGACGTCTCCTGCA 61.062 66.667 14.70 0.00 0.00 4.41
241 242 2.179517 CCTCGACGTCTCCTGCAC 59.820 66.667 14.70 0.00 0.00 4.57
242 243 2.626780 CCTCGACGTCTCCTGCACA 61.627 63.158 14.70 0.00 0.00 4.57
243 244 1.285950 CTCGACGTCTCCTGCACAA 59.714 57.895 14.70 0.00 0.00 3.33
244 245 0.318699 CTCGACGTCTCCTGCACAAA 60.319 55.000 14.70 0.00 0.00 2.83
245 246 0.317160 TCGACGTCTCCTGCACAAAT 59.683 50.000 14.70 0.00 0.00 2.32
246 247 0.716108 CGACGTCTCCTGCACAAATC 59.284 55.000 14.70 0.00 0.00 2.17
247 248 1.079503 GACGTCTCCTGCACAAATCC 58.920 55.000 8.70 0.00 0.00 3.01
248 249 0.396435 ACGTCTCCTGCACAAATCCA 59.604 50.000 0.00 0.00 0.00 3.41
249 250 1.081892 CGTCTCCTGCACAAATCCAG 58.918 55.000 0.00 0.00 0.00 3.86
250 251 0.807496 GTCTCCTGCACAAATCCAGC 59.193 55.000 0.00 0.00 0.00 4.85
251 252 0.694771 TCTCCTGCACAAATCCAGCT 59.305 50.000 0.00 0.00 0.00 4.24
252 253 1.074405 TCTCCTGCACAAATCCAGCTT 59.926 47.619 0.00 0.00 0.00 3.74
253 254 1.201647 CTCCTGCACAAATCCAGCTTG 59.798 52.381 0.00 0.00 0.00 4.01
254 255 0.245539 CCTGCACAAATCCAGCTTGG 59.754 55.000 0.00 0.00 39.43 3.61
255 256 0.245539 CTGCACAAATCCAGCTTGGG 59.754 55.000 2.86 0.00 38.32 4.12
256 257 1.186917 TGCACAAATCCAGCTTGGGG 61.187 55.000 2.86 0.00 38.32 4.96
257 258 0.899717 GCACAAATCCAGCTTGGGGA 60.900 55.000 0.00 0.00 38.32 4.81
259 260 1.479323 CACAAATCCAGCTTGGGGATG 59.521 52.381 4.90 0.00 44.30 3.51
264 265 2.599597 CAGCTTGGGGATGGAGGG 59.400 66.667 0.00 0.00 0.00 4.30
265 266 2.002977 CAGCTTGGGGATGGAGGGA 61.003 63.158 0.00 0.00 0.00 4.20
266 267 1.230281 AGCTTGGGGATGGAGGGAA 60.230 57.895 0.00 0.00 0.00 3.97
267 268 0.850883 AGCTTGGGGATGGAGGGAAA 60.851 55.000 0.00 0.00 0.00 3.13
268 269 0.684479 GCTTGGGGATGGAGGGAAAC 60.684 60.000 0.00 0.00 0.00 2.78
281 282 3.324207 GGAAACCACCTCACAGTCC 57.676 57.895 0.00 0.00 0.00 3.85
282 283 0.602905 GGAAACCACCTCACAGTCCG 60.603 60.000 0.00 0.00 0.00 4.79
283 284 1.227853 AAACCACCTCACAGTCCGC 60.228 57.895 0.00 0.00 0.00 5.54
284 285 1.696097 AAACCACCTCACAGTCCGCT 61.696 55.000 0.00 0.00 0.00 5.52
285 286 2.100879 AACCACCTCACAGTCCGCTC 62.101 60.000 0.00 0.00 0.00 5.03
286 287 2.574018 CCACCTCACAGTCCGCTCA 61.574 63.158 0.00 0.00 0.00 4.26
287 288 1.373497 CACCTCACAGTCCGCTCAC 60.373 63.158 0.00 0.00 0.00 3.51
288 289 2.262915 CCTCACAGTCCGCTCACC 59.737 66.667 0.00 0.00 0.00 4.02
289 290 2.574018 CCTCACAGTCCGCTCACCA 61.574 63.158 0.00 0.00 0.00 4.17
290 291 1.367471 CTCACAGTCCGCTCACCAA 59.633 57.895 0.00 0.00 0.00 3.67
291 292 0.946221 CTCACAGTCCGCTCACCAAC 60.946 60.000 0.00 0.00 0.00 3.77
292 293 2.029073 ACAGTCCGCTCACCAACG 59.971 61.111 0.00 0.00 0.00 4.10
299 300 3.670377 GCTCACCAACGGGCCAAC 61.670 66.667 4.39 0.00 37.90 3.77
300 301 3.353836 CTCACCAACGGGCCAACG 61.354 66.667 4.39 1.48 37.90 4.10
313 314 4.711949 CAACGCTGGAGCTGCCCT 62.712 66.667 1.53 0.00 39.32 5.19
314 315 4.711949 AACGCTGGAGCTGCCCTG 62.712 66.667 1.53 2.94 39.32 4.45
316 317 4.711949 CGCTGGAGCTGCCCTGTT 62.712 66.667 1.53 0.00 39.32 3.16
317 318 3.060615 GCTGGAGCTGCCCTGTTG 61.061 66.667 1.53 0.00 38.21 3.33
318 319 3.060615 CTGGAGCTGCCCTGTTGC 61.061 66.667 1.53 0.00 34.97 4.17
319 320 4.666253 TGGAGCTGCCCTGTTGCC 62.666 66.667 1.53 0.00 34.97 4.52
329 330 4.012895 CTGTTGCCGCCGTGACAC 62.013 66.667 0.00 0.00 0.00 3.67
337 338 3.936203 GCCGTGACACCACCCAGA 61.936 66.667 0.00 0.00 40.12 3.86
338 339 2.030562 CCGTGACACCACCCAGAC 59.969 66.667 0.00 0.00 40.12 3.51
339 340 2.030562 CGTGACACCACCCAGACC 59.969 66.667 0.00 0.00 40.12 3.85
340 341 2.802724 CGTGACACCACCCAGACCA 61.803 63.158 0.00 0.00 40.12 4.02
341 342 1.227853 GTGACACCACCCAGACCAC 60.228 63.158 0.00 0.00 37.33 4.16
342 343 1.383943 TGACACCACCCAGACCACT 60.384 57.895 0.00 0.00 0.00 4.00
343 344 1.071471 GACACCACCCAGACCACTG 59.929 63.158 0.00 0.00 43.12 3.66
344 345 2.281761 CACCACCCAGACCACTGC 60.282 66.667 0.00 0.00 42.25 4.40
345 346 3.570212 ACCACCCAGACCACTGCC 61.570 66.667 0.00 0.00 42.25 4.85
346 347 3.569210 CCACCCAGACCACTGCCA 61.569 66.667 0.00 0.00 42.25 4.92
347 348 2.759114 CACCCAGACCACTGCCAT 59.241 61.111 0.00 0.00 42.25 4.40
348 349 1.676635 CACCCAGACCACTGCCATG 60.677 63.158 0.00 0.00 42.25 3.66
349 350 2.044650 CCCAGACCACTGCCATGG 60.045 66.667 7.63 7.63 46.10 3.66
350 351 2.044650 CCAGACCACTGCCATGGG 60.045 66.667 15.13 0.00 44.81 4.00
368 369 3.133464 CCGCCATCACGCCACATT 61.133 61.111 0.00 0.00 0.00 2.71
369 370 2.404789 CGCCATCACGCCACATTC 59.595 61.111 0.00 0.00 0.00 2.67
370 371 2.397754 CGCCATCACGCCACATTCA 61.398 57.895 0.00 0.00 0.00 2.57
371 372 1.430632 GCCATCACGCCACATTCAG 59.569 57.895 0.00 0.00 0.00 3.02
372 373 1.026182 GCCATCACGCCACATTCAGA 61.026 55.000 0.00 0.00 0.00 3.27
373 374 1.452110 CCATCACGCCACATTCAGAA 58.548 50.000 0.00 0.00 0.00 3.02
374 375 1.399440 CCATCACGCCACATTCAGAAG 59.601 52.381 0.00 0.00 0.00 2.85
375 376 1.399440 CATCACGCCACATTCAGAAGG 59.601 52.381 0.00 0.00 0.00 3.46
376 377 0.955428 TCACGCCACATTCAGAAGGC 60.955 55.000 2.36 2.36 43.61 4.35
377 378 1.675641 ACGCCACATTCAGAAGGCC 60.676 57.895 0.00 0.00 44.18 5.19
378 379 2.409870 CGCCACATTCAGAAGGCCC 61.410 63.158 0.00 0.00 44.18 5.80
379 380 2.409870 GCCACATTCAGAAGGCCCG 61.410 63.158 0.00 0.00 41.25 6.13
380 381 1.299648 CCACATTCAGAAGGCCCGA 59.700 57.895 0.00 0.00 0.00 5.14
381 382 0.107017 CCACATTCAGAAGGCCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
382 383 1.303309 CACATTCAGAAGGCCCGATC 58.697 55.000 0.00 0.00 0.00 3.69
383 384 0.911769 ACATTCAGAAGGCCCGATCA 59.088 50.000 0.00 0.00 0.00 2.92
384 385 1.492176 ACATTCAGAAGGCCCGATCAT 59.508 47.619 0.00 0.00 0.00 2.45
385 386 2.149578 CATTCAGAAGGCCCGATCATC 58.850 52.381 0.00 0.00 0.00 2.92
386 387 1.203237 TTCAGAAGGCCCGATCATCA 58.797 50.000 0.00 0.00 0.00 3.07
387 388 1.427809 TCAGAAGGCCCGATCATCAT 58.572 50.000 0.00 0.00 0.00 2.45
388 389 1.071228 TCAGAAGGCCCGATCATCATG 59.929 52.381 0.00 0.00 0.00 3.07
389 390 0.250640 AGAAGGCCCGATCATCATGC 60.251 55.000 0.00 0.00 0.00 4.06
390 391 0.535780 GAAGGCCCGATCATCATGCA 60.536 55.000 0.00 0.00 0.00 3.96
391 392 0.536687 AAGGCCCGATCATCATGCAG 60.537 55.000 0.00 0.00 0.00 4.41
392 393 1.071987 GGCCCGATCATCATGCAGA 59.928 57.895 0.00 0.00 0.00 4.26
393 394 1.233285 GGCCCGATCATCATGCAGAC 61.233 60.000 0.00 0.00 0.00 3.51
394 395 0.250209 GCCCGATCATCATGCAGACT 60.250 55.000 0.00 0.00 0.00 3.24
395 396 1.509703 CCCGATCATCATGCAGACTG 58.490 55.000 0.00 0.00 0.00 3.51
396 397 1.069668 CCCGATCATCATGCAGACTGA 59.930 52.381 6.65 0.00 0.00 3.41
397 398 2.289506 CCCGATCATCATGCAGACTGAT 60.290 50.000 6.65 7.23 33.65 2.90
398 399 3.400255 CCGATCATCATGCAGACTGATT 58.600 45.455 6.65 0.00 31.00 2.57
399 400 3.432592 CCGATCATCATGCAGACTGATTC 59.567 47.826 6.65 1.33 31.00 2.52
400 401 4.308265 CGATCATCATGCAGACTGATTCT 58.692 43.478 6.65 0.00 31.00 2.40
401 402 4.750598 CGATCATCATGCAGACTGATTCTT 59.249 41.667 6.65 0.00 31.00 2.52
402 403 5.236695 CGATCATCATGCAGACTGATTCTTT 59.763 40.000 6.65 0.00 31.00 2.52
403 404 5.813080 TCATCATGCAGACTGATTCTTTG 57.187 39.130 6.65 0.00 31.00 2.77
404 405 5.493809 TCATCATGCAGACTGATTCTTTGA 58.506 37.500 6.65 0.00 31.00 2.69
405 406 5.353400 TCATCATGCAGACTGATTCTTTGAC 59.647 40.000 6.65 0.00 31.00 3.18
406 407 4.644498 TCATGCAGACTGATTCTTTGACA 58.356 39.130 6.65 0.00 28.96 3.58
407 408 4.694037 TCATGCAGACTGATTCTTTGACAG 59.306 41.667 6.65 0.00 37.62 3.51
408 409 2.810274 TGCAGACTGATTCTTTGACAGC 59.190 45.455 6.65 0.00 35.38 4.40
409 410 2.159734 GCAGACTGATTCTTTGACAGCG 60.160 50.000 6.65 0.00 35.38 5.18
410 411 2.072298 AGACTGATTCTTTGACAGCGC 58.928 47.619 0.00 0.00 35.38 5.92
411 412 2.072298 GACTGATTCTTTGACAGCGCT 58.928 47.619 2.64 2.64 35.38 5.92
412 413 2.481952 GACTGATTCTTTGACAGCGCTT 59.518 45.455 7.50 0.00 35.38 4.68
413 414 3.664107 ACTGATTCTTTGACAGCGCTTA 58.336 40.909 7.50 0.00 35.38 3.09
414 415 3.433615 ACTGATTCTTTGACAGCGCTTAC 59.566 43.478 7.50 5.25 35.38 2.34
415 416 3.664107 TGATTCTTTGACAGCGCTTACT 58.336 40.909 7.50 0.00 0.00 2.24
416 417 4.065088 TGATTCTTTGACAGCGCTTACTT 58.935 39.130 7.50 0.00 0.00 2.24
417 418 4.152402 TGATTCTTTGACAGCGCTTACTTC 59.848 41.667 7.50 2.24 0.00 3.01
418 419 3.106242 TCTTTGACAGCGCTTACTTCA 57.894 42.857 7.50 5.32 0.00 3.02
419 420 3.059884 TCTTTGACAGCGCTTACTTCAG 58.940 45.455 7.50 0.00 0.00 3.02
420 421 2.526304 TTGACAGCGCTTACTTCAGT 57.474 45.000 7.50 0.00 0.00 3.41
421 422 2.065993 TGACAGCGCTTACTTCAGTC 57.934 50.000 7.50 11.27 0.00 3.51
422 423 1.339929 TGACAGCGCTTACTTCAGTCA 59.660 47.619 17.47 17.47 32.70 3.41
423 424 1.721926 GACAGCGCTTACTTCAGTCAC 59.278 52.381 7.50 0.00 0.00 3.67
424 425 1.068588 ACAGCGCTTACTTCAGTCACA 59.931 47.619 7.50 0.00 0.00 3.58
425 426 1.457303 CAGCGCTTACTTCAGTCACAC 59.543 52.381 7.50 0.00 0.00 3.82
426 427 0.435008 GCGCTTACTTCAGTCACACG 59.565 55.000 0.00 0.00 0.00 4.49
427 428 0.435008 CGCTTACTTCAGTCACACGC 59.565 55.000 0.00 0.00 0.00 5.34
428 429 0.435008 GCTTACTTCAGTCACACGCG 59.565 55.000 3.53 3.53 0.00 6.01
429 430 1.929038 GCTTACTTCAGTCACACGCGA 60.929 52.381 15.93 0.00 0.00 5.87
430 431 2.596452 CTTACTTCAGTCACACGCGAT 58.404 47.619 15.93 0.00 0.00 4.58
431 432 3.754955 CTTACTTCAGTCACACGCGATA 58.245 45.455 15.93 0.00 0.00 2.92
432 433 2.264109 ACTTCAGTCACACGCGATAG 57.736 50.000 15.93 4.52 0.00 2.08
444 445 4.878774 CGATAGCCTGGATCGCTC 57.121 61.111 0.00 0.00 39.71 5.03
445 446 1.154131 CGATAGCCTGGATCGCTCG 60.154 63.158 0.00 0.00 39.71 5.03
446 447 1.214062 GATAGCCTGGATCGCTCGG 59.786 63.158 0.00 0.00 37.79 4.63
447 448 2.827383 GATAGCCTGGATCGCTCGGC 62.827 65.000 0.00 1.43 42.79 5.54
458 459 3.938112 GCTCGGCGTATGGTCATC 58.062 61.111 6.85 0.00 0.00 2.92
459 460 1.364171 GCTCGGCGTATGGTCATCT 59.636 57.895 6.85 0.00 0.00 2.90
460 461 0.249489 GCTCGGCGTATGGTCATCTT 60.249 55.000 6.85 0.00 0.00 2.40
461 462 1.491670 CTCGGCGTATGGTCATCTTG 58.508 55.000 6.85 0.00 0.00 3.02
462 463 0.821517 TCGGCGTATGGTCATCTTGT 59.178 50.000 6.85 0.00 0.00 3.16
463 464 1.206132 TCGGCGTATGGTCATCTTGTT 59.794 47.619 6.85 0.00 0.00 2.83
464 465 1.327460 CGGCGTATGGTCATCTTGTTG 59.673 52.381 0.00 0.00 0.00 3.33
465 466 2.356135 GGCGTATGGTCATCTTGTTGT 58.644 47.619 0.00 0.00 0.00 3.32
466 467 2.747446 GGCGTATGGTCATCTTGTTGTT 59.253 45.455 0.00 0.00 0.00 2.83
467 468 3.426159 GGCGTATGGTCATCTTGTTGTTG 60.426 47.826 0.00 0.00 0.00 3.33
468 469 3.435327 GCGTATGGTCATCTTGTTGTTGA 59.565 43.478 0.00 0.00 0.00 3.18
469 470 4.436050 GCGTATGGTCATCTTGTTGTTGAG 60.436 45.833 0.00 0.00 0.00 3.02
470 471 4.929211 CGTATGGTCATCTTGTTGTTGAGA 59.071 41.667 0.00 0.00 0.00 3.27
471 472 5.582269 CGTATGGTCATCTTGTTGTTGAGAT 59.418 40.000 0.00 0.00 33.01 2.75
472 473 6.092670 CGTATGGTCATCTTGTTGTTGAGATT 59.907 38.462 0.00 0.00 30.43 2.40
473 474 7.277760 CGTATGGTCATCTTGTTGTTGAGATTA 59.722 37.037 0.00 0.00 30.43 1.75
474 475 8.946085 GTATGGTCATCTTGTTGTTGAGATTAA 58.054 33.333 0.00 0.00 30.43 1.40
475 476 7.815840 TGGTCATCTTGTTGTTGAGATTAAA 57.184 32.000 0.00 0.00 30.43 1.52
476 477 7.648142 TGGTCATCTTGTTGTTGAGATTAAAC 58.352 34.615 0.00 0.00 30.43 2.01
477 478 7.284261 TGGTCATCTTGTTGTTGAGATTAAACA 59.716 33.333 0.00 0.00 35.78 2.83
478 479 7.591426 GGTCATCTTGTTGTTGAGATTAAACAC 59.409 37.037 0.00 0.00 37.26 3.32
479 480 8.345565 GTCATCTTGTTGTTGAGATTAAACACT 58.654 33.333 0.00 0.00 37.26 3.55
480 481 8.902806 TCATCTTGTTGTTGAGATTAAACACTT 58.097 29.630 0.00 0.00 37.26 3.16
494 495 8.971073 AGATTAAACACTTAATGAAAGATGGGG 58.029 33.333 0.00 0.00 37.76 4.96
495 496 8.893563 ATTAAACACTTAATGAAAGATGGGGA 57.106 30.769 0.00 0.00 36.55 4.81
496 497 6.590234 AAACACTTAATGAAAGATGGGGAC 57.410 37.500 0.00 0.00 38.67 4.46
497 498 5.520748 ACACTTAATGAAAGATGGGGACT 57.479 39.130 0.00 0.00 38.67 3.85
498 499 5.892348 ACACTTAATGAAAGATGGGGACTT 58.108 37.500 0.00 0.00 38.67 3.01
499 500 6.314917 ACACTTAATGAAAGATGGGGACTTT 58.685 36.000 0.00 0.00 39.76 2.66
500 501 7.466804 ACACTTAATGAAAGATGGGGACTTTA 58.533 34.615 0.00 0.00 37.64 1.85
501 502 8.116026 ACACTTAATGAAAGATGGGGACTTTAT 58.884 33.333 0.00 0.00 37.64 1.40
502 503 8.408601 CACTTAATGAAAGATGGGGACTTTATG 58.591 37.037 0.00 0.00 37.64 1.90
503 504 8.336235 ACTTAATGAAAGATGGGGACTTTATGA 58.664 33.333 0.00 0.00 37.64 2.15
504 505 8.519799 TTAATGAAAGATGGGGACTTTATGAC 57.480 34.615 0.00 0.00 37.64 3.06
505 506 4.855340 TGAAAGATGGGGACTTTATGACC 58.145 43.478 0.00 0.00 37.64 4.02
506 507 4.540099 TGAAAGATGGGGACTTTATGACCT 59.460 41.667 0.00 0.00 37.64 3.85
507 508 5.729229 TGAAAGATGGGGACTTTATGACCTA 59.271 40.000 0.00 0.00 37.64 3.08
508 509 5.896073 AAGATGGGGACTTTATGACCTAG 57.104 43.478 0.00 0.00 0.00 3.02
509 510 5.157770 AGATGGGGACTTTATGACCTAGA 57.842 43.478 0.00 0.00 0.00 2.43
510 511 5.538877 AGATGGGGACTTTATGACCTAGAA 58.461 41.667 0.00 0.00 0.00 2.10
511 512 5.970640 AGATGGGGACTTTATGACCTAGAAA 59.029 40.000 0.00 0.00 0.00 2.52
512 513 6.447084 AGATGGGGACTTTATGACCTAGAAAA 59.553 38.462 0.00 0.00 0.00 2.29
513 514 6.652205 TGGGGACTTTATGACCTAGAAAAT 57.348 37.500 0.00 0.00 0.00 1.82
514 515 7.039722 TGGGGACTTTATGACCTAGAAAATT 57.960 36.000 0.00 0.00 0.00 1.82
515 516 7.475299 TGGGGACTTTATGACCTAGAAAATTT 58.525 34.615 0.00 0.00 0.00 1.82
516 517 7.396055 TGGGGACTTTATGACCTAGAAAATTTG 59.604 37.037 0.00 0.00 0.00 2.32
517 518 7.258441 GGGACTTTATGACCTAGAAAATTTGC 58.742 38.462 0.00 0.00 0.00 3.68
518 519 7.258441 GGACTTTATGACCTAGAAAATTTGCC 58.742 38.462 0.00 0.00 0.00 4.52
519 520 6.852664 ACTTTATGACCTAGAAAATTTGCCG 58.147 36.000 0.00 0.00 0.00 5.69
520 521 6.433093 ACTTTATGACCTAGAAAATTTGCCGT 59.567 34.615 0.00 0.00 0.00 5.68
521 522 4.701956 ATGACCTAGAAAATTTGCCGTG 57.298 40.909 0.00 0.00 0.00 4.94
522 523 3.482436 TGACCTAGAAAATTTGCCGTGT 58.518 40.909 0.00 0.00 0.00 4.49
523 524 3.252215 TGACCTAGAAAATTTGCCGTGTG 59.748 43.478 0.00 0.00 0.00 3.82
524 525 2.030274 ACCTAGAAAATTTGCCGTGTGC 60.030 45.455 0.00 0.00 41.77 4.57
536 537 3.837669 CGTGTGCAAAACAGGGTAC 57.162 52.632 0.00 0.00 40.26 3.34
554 555 2.281761 CAGACCGCCTGGCTGTTT 60.282 61.111 17.03 8.84 39.23 2.83
555 556 1.003839 CAGACCGCCTGGCTGTTTA 60.004 57.895 17.03 0.00 39.23 2.01
556 557 0.392998 CAGACCGCCTGGCTGTTTAT 60.393 55.000 17.03 4.21 39.23 1.40
557 558 1.134521 CAGACCGCCTGGCTGTTTATA 60.135 52.381 17.03 0.00 39.23 0.98
558 559 1.139058 AGACCGCCTGGCTGTTTATAG 59.861 52.381 17.03 0.00 39.70 1.31
559 560 0.180406 ACCGCCTGGCTGTTTATAGG 59.820 55.000 17.92 10.17 39.70 2.57
567 568 2.999331 GGCTGTTTATAGGCCAACTGA 58.001 47.619 5.01 0.00 44.69 3.41
568 569 3.352648 GGCTGTTTATAGGCCAACTGAA 58.647 45.455 5.01 0.00 44.69 3.02
569 570 3.954258 GGCTGTTTATAGGCCAACTGAAT 59.046 43.478 5.01 0.00 44.69 2.57
570 571 4.202050 GGCTGTTTATAGGCCAACTGAATG 60.202 45.833 5.01 0.00 44.69 2.67
571 572 4.399303 GCTGTTTATAGGCCAACTGAATGT 59.601 41.667 5.01 0.00 0.00 2.71
572 573 5.677091 GCTGTTTATAGGCCAACTGAATGTG 60.677 44.000 5.01 0.00 0.00 3.21
573 574 4.704540 TGTTTATAGGCCAACTGAATGTGG 59.295 41.667 5.01 0.00 0.00 4.17
574 575 1.767759 ATAGGCCAACTGAATGTGGC 58.232 50.000 5.01 6.12 40.04 5.01
575 576 0.403655 TAGGCCAACTGAATGTGGCA 59.596 50.000 15.97 0.00 41.43 4.92
576 577 1.181098 AGGCCAACTGAATGTGGCAC 61.181 55.000 11.55 11.55 41.43 5.01
577 578 1.181098 GGCCAACTGAATGTGGCACT 61.181 55.000 19.83 0.00 41.43 4.40
578 579 1.533625 GCCAACTGAATGTGGCACTA 58.466 50.000 19.83 5.69 40.29 2.74
579 580 1.200020 GCCAACTGAATGTGGCACTAC 59.800 52.381 19.83 10.33 40.29 2.73
580 581 2.783135 CCAACTGAATGTGGCACTACT 58.217 47.619 19.83 2.62 0.00 2.57
581 582 2.485426 CCAACTGAATGTGGCACTACTG 59.515 50.000 19.83 14.73 0.00 2.74
582 583 2.479566 ACTGAATGTGGCACTACTGG 57.520 50.000 19.83 8.79 0.00 4.00
583 584 1.089920 CTGAATGTGGCACTACTGGC 58.910 55.000 19.83 3.17 43.44 4.85
584 585 0.692476 TGAATGTGGCACTACTGGCT 59.308 50.000 19.83 0.00 43.53 4.75
585 586 1.089920 GAATGTGGCACTACTGGCTG 58.910 55.000 19.83 0.00 43.53 4.85
586 587 0.401738 AATGTGGCACTACTGGCTGT 59.598 50.000 19.83 1.74 43.53 4.40
587 588 1.275666 ATGTGGCACTACTGGCTGTA 58.724 50.000 19.83 4.12 43.53 2.74
588 589 1.275666 TGTGGCACTACTGGCTGTAT 58.724 50.000 19.83 0.00 43.53 2.29
589 590 1.066215 TGTGGCACTACTGGCTGTATG 60.066 52.381 19.83 7.04 43.53 2.39
590 591 0.541392 TGGCACTACTGGCTGTATGG 59.459 55.000 4.63 2.11 43.53 2.74
591 592 0.815615 GGCACTACTGGCTGTATGGC 60.816 60.000 17.12 17.12 39.91 4.40
592 593 0.179000 GCACTACTGGCTGTATGGCT 59.821 55.000 15.47 0.00 42.34 4.75
593 594 1.412710 GCACTACTGGCTGTATGGCTA 59.587 52.381 15.47 0.00 42.34 3.93
594 595 2.803492 GCACTACTGGCTGTATGGCTAC 60.803 54.545 15.47 0.00 42.34 3.58
595 596 2.430694 CACTACTGGCTGTATGGCTACA 59.569 50.000 4.63 0.00 42.34 2.74
596 597 3.070159 CACTACTGGCTGTATGGCTACAT 59.930 47.826 4.63 0.00 42.34 2.29
597 598 2.918712 ACTGGCTGTATGGCTACATC 57.081 50.000 0.00 0.00 42.34 3.06
598 599 2.118679 ACTGGCTGTATGGCTACATCA 58.881 47.619 0.00 0.00 42.34 3.07
599 600 2.707791 ACTGGCTGTATGGCTACATCAT 59.292 45.455 0.00 0.00 42.34 2.45
600 601 3.137176 ACTGGCTGTATGGCTACATCATT 59.863 43.478 0.00 0.00 42.34 2.57
601 602 3.479489 TGGCTGTATGGCTACATCATTG 58.521 45.455 0.00 0.00 42.34 2.82
602 603 2.227388 GGCTGTATGGCTACATCATTGC 59.773 50.000 0.00 0.00 37.24 3.56
608 609 2.355010 GGCTACATCATTGCCCTTCT 57.645 50.000 0.00 0.00 42.87 2.85
609 610 2.659428 GGCTACATCATTGCCCTTCTT 58.341 47.619 0.00 0.00 42.87 2.52
610 611 2.360165 GGCTACATCATTGCCCTTCTTG 59.640 50.000 0.00 0.00 42.87 3.02
611 612 3.019564 GCTACATCATTGCCCTTCTTGT 58.980 45.455 0.00 0.00 0.00 3.16
612 613 4.199310 GCTACATCATTGCCCTTCTTGTA 58.801 43.478 0.00 0.00 0.00 2.41
613 614 4.823989 GCTACATCATTGCCCTTCTTGTAT 59.176 41.667 0.00 0.00 0.00 2.29
614 615 5.300286 GCTACATCATTGCCCTTCTTGTATT 59.700 40.000 0.00 0.00 0.00 1.89
615 616 5.587388 ACATCATTGCCCTTCTTGTATTG 57.413 39.130 0.00 0.00 0.00 1.90
616 617 5.263599 ACATCATTGCCCTTCTTGTATTGA 58.736 37.500 0.00 0.00 0.00 2.57
617 618 5.359009 ACATCATTGCCCTTCTTGTATTGAG 59.641 40.000 0.00 0.00 0.00 3.02
618 619 4.272489 TCATTGCCCTTCTTGTATTGAGG 58.728 43.478 0.00 0.00 0.00 3.86
619 620 2.128771 TGCCCTTCTTGTATTGAGGC 57.871 50.000 0.00 0.00 39.41 4.70
620 621 1.635487 TGCCCTTCTTGTATTGAGGCT 59.365 47.619 0.00 0.00 39.68 4.58
621 622 2.293170 GCCCTTCTTGTATTGAGGCTC 58.707 52.381 7.79 7.79 36.00 4.70
622 623 2.092699 GCCCTTCTTGTATTGAGGCTCT 60.093 50.000 16.72 0.00 36.00 4.09
623 624 3.623453 GCCCTTCTTGTATTGAGGCTCTT 60.623 47.826 16.72 5.93 36.00 2.85
624 625 4.593956 CCCTTCTTGTATTGAGGCTCTTT 58.406 43.478 16.72 5.56 0.00 2.52
625 626 5.012893 CCCTTCTTGTATTGAGGCTCTTTT 58.987 41.667 16.72 2.97 0.00 2.27
626 627 5.105997 CCCTTCTTGTATTGAGGCTCTTTTG 60.106 44.000 16.72 0.13 0.00 2.44
627 628 5.376854 TTCTTGTATTGAGGCTCTTTTGC 57.623 39.130 16.72 4.74 0.00 3.68
637 638 2.412421 GCTCTTTTGCCACTTGACTG 57.588 50.000 0.00 0.00 0.00 3.51
638 639 1.678101 GCTCTTTTGCCACTTGACTGT 59.322 47.619 0.00 0.00 0.00 3.55
639 640 2.878406 GCTCTTTTGCCACTTGACTGTA 59.122 45.455 0.00 0.00 0.00 2.74
640 641 3.315191 GCTCTTTTGCCACTTGACTGTAA 59.685 43.478 0.00 0.00 0.00 2.41
641 642 4.789802 GCTCTTTTGCCACTTGACTGTAAC 60.790 45.833 0.00 0.00 0.00 2.50
642 643 3.630312 TCTTTTGCCACTTGACTGTAACC 59.370 43.478 0.00 0.00 0.00 2.85
643 644 3.290948 TTTGCCACTTGACTGTAACCT 57.709 42.857 0.00 0.00 0.00 3.50
644 645 3.290948 TTGCCACTTGACTGTAACCTT 57.709 42.857 0.00 0.00 0.00 3.50
645 646 4.425180 TTGCCACTTGACTGTAACCTTA 57.575 40.909 0.00 0.00 0.00 2.69
646 647 4.634012 TGCCACTTGACTGTAACCTTAT 57.366 40.909 0.00 0.00 0.00 1.73
647 648 4.575885 TGCCACTTGACTGTAACCTTATC 58.424 43.478 0.00 0.00 0.00 1.75
648 649 4.041075 TGCCACTTGACTGTAACCTTATCA 59.959 41.667 0.00 0.00 0.00 2.15
649 650 5.186198 GCCACTTGACTGTAACCTTATCAT 58.814 41.667 0.00 0.00 0.00 2.45
650 651 5.648092 GCCACTTGACTGTAACCTTATCATT 59.352 40.000 0.00 0.00 0.00 2.57
651 652 6.821665 GCCACTTGACTGTAACCTTATCATTA 59.178 38.462 0.00 0.00 0.00 1.90
652 653 7.499232 GCCACTTGACTGTAACCTTATCATTAT 59.501 37.037 0.00 0.00 0.00 1.28
653 654 8.830580 CCACTTGACTGTAACCTTATCATTATG 58.169 37.037 0.00 0.00 0.00 1.90
654 655 9.599866 CACTTGACTGTAACCTTATCATTATGA 57.400 33.333 0.00 0.00 0.00 2.15
733 734 4.474226 AGTTGAAAATCACTTCGACAGC 57.526 40.909 6.51 0.00 40.74 4.40
815 819 2.353889 TGGTCAACGTACGATAGCTCTC 59.646 50.000 24.41 4.19 42.67 3.20
821 825 1.726251 CGTACGATAGCTCTCCATGCG 60.726 57.143 10.44 0.00 42.67 4.73
831 836 2.444706 TCCATGCGAGCTAGCCCT 60.445 61.111 16.65 0.54 36.02 5.19
832 837 1.152546 TCCATGCGAGCTAGCCCTA 60.153 57.895 16.65 0.00 36.02 3.53
1022 1028 3.223435 TGGCTATCTCTACCAGTAGTGC 58.777 50.000 4.81 3.80 34.84 4.40
1027 1051 3.451402 TCTCTACCAGTAGTGCCTTCA 57.549 47.619 4.81 0.00 34.84 3.02
1057 1081 2.287915 ACGCTCTTGTGTTTTGCTACAG 59.712 45.455 0.00 0.00 32.25 2.74
1059 1083 3.493129 CGCTCTTGTGTTTTGCTACAGTA 59.507 43.478 0.00 0.00 0.00 2.74
1084 1108 1.740332 TTCACCTGTCAACGCGAGGA 61.740 55.000 15.93 6.77 0.00 3.71
1108 1132 0.250038 CCCTCGTATCCATGGCAGTG 60.250 60.000 6.96 0.00 0.00 3.66
1164 1188 0.034896 GGCCGTTCTCAAGGTCAAGA 59.965 55.000 0.00 0.00 31.24 3.02
1178 1202 0.756294 TCAAGAGACGGTTCTGGCAA 59.244 50.000 0.00 0.00 29.47 4.52
1528 1585 4.083862 GTGGAGGAGGTGACGGCC 62.084 72.222 0.00 0.00 0.00 6.13
1590 1647 4.424711 GGCAATGCCGTGGGGAGA 62.425 66.667 9.14 0.00 39.62 3.71
1605 1662 2.203938 AGAGGCCAAGGTTCCGGA 60.204 61.111 5.01 0.00 0.00 5.14
1830 1895 3.535280 TCTGCAGTGTCAGTGTGTAAA 57.465 42.857 14.67 0.00 35.63 2.01
1874 1945 2.838736 CATGTAGGTCCATGTAGGCAC 58.161 52.381 0.00 0.00 37.91 5.01
1884 1955 3.068165 TCCATGTAGGCACGAGTATGAAG 59.932 47.826 0.00 0.00 37.29 3.02
1896 1971 5.174035 CACGAGTATGAAGTAAGCTATGTGC 59.826 44.000 0.00 0.00 43.29 4.57
1931 2006 9.965902 ATTGATGAATAATATGGGAGAACCTAC 57.034 33.333 0.00 0.00 41.11 3.18
1954 2029 9.906660 CTACAAAACAGGTGCTGAATTTATTTA 57.093 29.630 0.00 0.00 35.18 1.40
1956 2031 9.777297 ACAAAACAGGTGCTGAATTTATTTATT 57.223 25.926 0.00 0.00 35.18 1.40
2016 2101 5.057149 ACTCCATTCGCTATAACCATTGTC 58.943 41.667 0.00 0.00 0.00 3.18
2017 2102 5.029807 TCCATTCGCTATAACCATTGTCA 57.970 39.130 0.00 0.00 0.00 3.58
2020 2105 2.816689 TCGCTATAACCATTGTCACGG 58.183 47.619 0.00 0.00 0.00 4.94
2021 2106 1.260561 CGCTATAACCATTGTCACGGC 59.739 52.381 0.00 0.00 0.00 5.68
2022 2107 1.602377 GCTATAACCATTGTCACGGCC 59.398 52.381 0.00 0.00 0.00 6.13
2024 2109 1.750193 ATAACCATTGTCACGGCCTG 58.250 50.000 0.00 0.00 0.00 4.85
2051 2138 2.558795 CGTCTCACCTTCTTTCTCCTCA 59.441 50.000 0.00 0.00 0.00 3.86
2055 2142 1.699634 CACCTTCTTTCTCCTCACCCA 59.300 52.381 0.00 0.00 0.00 4.51
2084 2171 0.032678 CTTCTCATCCATCCCGACGG 59.967 60.000 6.99 6.99 0.00 4.79
2109 2196 0.914417 CCCTCCAACCAAGGCCTAGA 60.914 60.000 5.16 0.00 32.15 2.43
2111 2198 0.984230 CTCCAACCAAGGCCTAGACA 59.016 55.000 5.16 0.00 0.00 3.41
2113 2200 0.322546 CCAACCAAGGCCTAGACACC 60.323 60.000 5.16 0.00 0.00 4.16
2116 2203 2.125106 CAAGGCCTAGACACCGGC 60.125 66.667 5.16 0.00 45.55 6.13
2154 2241 4.351054 CCTGCCCAAGCCGGTTCT 62.351 66.667 1.90 0.00 38.50 3.01
2167 2254 2.357034 GTTCTTCCGGCGTGCTGA 60.357 61.111 6.01 0.00 0.00 4.26
2169 2256 3.876589 TTCTTCCGGCGTGCTGACC 62.877 63.158 6.01 0.00 0.00 4.02
2187 2274 1.619807 CCCCGTACCGAACATCCCTT 61.620 60.000 0.00 0.00 0.00 3.95
2189 2276 1.365699 CCGTACCGAACATCCCTTTG 58.634 55.000 0.00 0.00 0.00 2.77
2190 2277 1.338389 CCGTACCGAACATCCCTTTGT 60.338 52.381 0.00 0.00 0.00 2.83
2191 2278 2.094078 CCGTACCGAACATCCCTTTGTA 60.094 50.000 0.00 0.00 0.00 2.41
2192 2279 3.587923 CGTACCGAACATCCCTTTGTAA 58.412 45.455 0.00 0.00 0.00 2.41
2193 2280 4.186159 CGTACCGAACATCCCTTTGTAAT 58.814 43.478 0.00 0.00 0.00 1.89
2194 2281 4.632688 CGTACCGAACATCCCTTTGTAATT 59.367 41.667 0.00 0.00 0.00 1.40
2195 2282 5.122711 CGTACCGAACATCCCTTTGTAATTT 59.877 40.000 0.00 0.00 0.00 1.82
2196 2283 5.385509 ACCGAACATCCCTTTGTAATTTG 57.614 39.130 0.00 0.00 0.00 2.32
2204 2291 7.471890 ACATCCCTTTGTAATTTGTACCCTTA 58.528 34.615 0.00 0.00 0.00 2.69
2267 2354 2.032681 GCTGTCAACCTCGGCCTT 59.967 61.111 0.00 0.00 0.00 4.35
2279 2366 2.046023 GGCCTTGCCCCAATTTGC 60.046 61.111 0.00 0.00 44.06 3.68
2290 2509 2.548493 CCCCAATTTGCAAGACAAGGTG 60.548 50.000 0.00 0.00 40.06 4.00
2371 2602 1.153667 GTGCTGCCTCTTCTCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
2373 2604 2.720134 GCTGCCTCTTCTCCTCGCT 61.720 63.158 0.00 0.00 0.00 4.93
2431 2663 4.323417 ACAACTGACGATTAGCAAATCCA 58.677 39.130 0.00 0.00 38.66 3.41
2437 2669 7.220030 ACTGACGATTAGCAAATCCAGAATAT 58.780 34.615 9.77 0.00 38.66 1.28
2438 2670 8.367911 ACTGACGATTAGCAAATCCAGAATATA 58.632 33.333 9.77 0.00 38.66 0.86
2439 2671 9.376075 CTGACGATTAGCAAATCCAGAATATAT 57.624 33.333 0.00 0.00 38.66 0.86
2478 2710 4.637483 TTTCTTGCTGTCCAACTCAAAG 57.363 40.909 0.00 0.00 0.00 2.77
2494 2730 6.594284 ACTCAAAGAAAAATTTGCTTGCTC 57.406 33.333 0.00 0.00 39.51 4.26
2495 2731 5.232838 ACTCAAAGAAAAATTTGCTTGCTCG 59.767 36.000 0.00 0.00 39.51 5.03
2519 2757 6.519043 CGAACCATGGATATGTAGATTCCTGT 60.519 42.308 21.47 0.00 32.21 4.00
2526 2764 8.956446 TGGATATGTAGATTCCTGTCATTCTA 57.044 34.615 0.00 0.00 0.00 2.10
2553 2792 3.566351 ACTTTGGAAAGCTGCCTAGTTT 58.434 40.909 7.34 0.00 39.63 2.66
2573 2812 9.630098 CTAGTTTGTTCCTCGTTAATTACTACA 57.370 33.333 0.00 0.00 0.00 2.74
2575 2814 9.148104 AGTTTGTTCCTCGTTAATTACTACATC 57.852 33.333 0.00 0.00 0.00 3.06
2576 2815 9.148104 GTTTGTTCCTCGTTAATTACTACATCT 57.852 33.333 0.00 0.00 0.00 2.90
2577 2816 8.697846 TTGTTCCTCGTTAATTACTACATCTG 57.302 34.615 0.00 0.00 0.00 2.90
2578 2817 6.755141 TGTTCCTCGTTAATTACTACATCTGC 59.245 38.462 0.00 0.00 0.00 4.26
2579 2818 6.710597 TCCTCGTTAATTACTACATCTGCT 57.289 37.500 0.00 0.00 0.00 4.24
2580 2819 7.108841 TCCTCGTTAATTACTACATCTGCTT 57.891 36.000 0.00 0.00 0.00 3.91
2581 2820 7.553334 TCCTCGTTAATTACTACATCTGCTTT 58.447 34.615 0.00 0.00 0.00 3.51
2582 2821 7.705325 TCCTCGTTAATTACTACATCTGCTTTC 59.295 37.037 0.00 0.00 0.00 2.62
2583 2822 7.306051 CCTCGTTAATTACTACATCTGCTTTCG 60.306 40.741 0.00 0.00 0.00 3.46
2584 2823 6.020121 TCGTTAATTACTACATCTGCTTTCGC 60.020 38.462 0.00 0.00 0.00 4.70
2585 2824 6.419771 GTTAATTACTACATCTGCTTTCGCC 58.580 40.000 0.00 0.00 34.43 5.54
2586 2825 2.203800 TACTACATCTGCTTTCGCCG 57.796 50.000 0.00 0.00 34.43 6.46
2587 2826 1.084370 ACTACATCTGCTTTCGCCGC 61.084 55.000 0.00 0.00 34.43 6.53
2588 2827 1.079474 TACATCTGCTTTCGCCGCA 60.079 52.632 0.00 0.00 35.80 5.69
2589 2828 0.672091 TACATCTGCTTTCGCCGCAA 60.672 50.000 0.00 0.00 36.88 4.85
2590 2829 1.209898 CATCTGCTTTCGCCGCAAA 59.790 52.632 0.00 0.00 36.88 3.68
2591 2830 0.387112 CATCTGCTTTCGCCGCAAAA 60.387 50.000 0.00 0.00 36.88 2.44
2592 2831 0.313672 ATCTGCTTTCGCCGCAAAAA 59.686 45.000 0.00 0.00 36.88 1.94
2593 2832 0.317770 TCTGCTTTCGCCGCAAAAAG 60.318 50.000 9.76 9.76 36.88 2.27
2594 2833 0.317770 CTGCTTTCGCCGCAAAAAGA 60.318 50.000 15.85 4.39 36.88 2.52
2595 2834 0.101399 TGCTTTCGCCGCAAAAAGAA 59.899 45.000 15.85 5.82 35.02 2.52
2596 2835 1.204792 GCTTTCGCCGCAAAAAGAAA 58.795 45.000 15.85 5.21 35.02 2.52
2597 2836 1.590698 GCTTTCGCCGCAAAAAGAAAA 59.409 42.857 15.85 0.00 35.02 2.29
2598 2837 2.220824 GCTTTCGCCGCAAAAAGAAAAT 59.779 40.909 15.85 0.00 35.02 1.82
2599 2838 3.303066 GCTTTCGCCGCAAAAAGAAAATT 60.303 39.130 15.85 0.00 35.02 1.82
2600 2839 4.084797 GCTTTCGCCGCAAAAAGAAAATTA 60.085 37.500 15.85 0.00 35.02 1.40
2601 2840 4.957832 TTCGCCGCAAAAAGAAAATTAC 57.042 36.364 0.00 0.00 0.00 1.89
2602 2841 4.231718 TCGCCGCAAAAAGAAAATTACT 57.768 36.364 0.00 0.00 0.00 2.24
2603 2842 5.359716 TCGCCGCAAAAAGAAAATTACTA 57.640 34.783 0.00 0.00 0.00 1.82
2604 2843 5.148568 TCGCCGCAAAAAGAAAATTACTAC 58.851 37.500 0.00 0.00 0.00 2.73
2618 2857 7.491696 AGAAAATTACTACATCTGCTAACGGTC 59.508 37.037 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.631753 TGGACTTGGGGGTTGTTCAA 59.368 50.000 0.00 0.00 0.00 2.69
57 58 2.272146 CCCGACATGGACTTGGGG 59.728 66.667 0.00 0.00 42.00 4.96
62 63 1.690219 GATCTGGCCCGACATGGACT 61.690 60.000 0.00 0.00 42.00 3.85
85 86 2.688666 AAGGCGGGGAGATGCAGA 60.689 61.111 0.00 0.00 0.00 4.26
140 141 2.388347 GCATCCTTGCCTCTCGTTC 58.612 57.895 0.00 0.00 43.38 3.95
141 142 4.625800 GCATCCTTGCCTCTCGTT 57.374 55.556 0.00 0.00 43.38 3.85
169 170 0.322975 GATGCTCTGTCACCAGTGGT 59.677 55.000 9.70 9.70 39.82 4.16
170 171 0.392193 GGATGCTCTGTCACCAGTGG 60.392 60.000 7.91 7.91 39.82 4.00
171 172 0.392193 GGGATGCTCTGTCACCAGTG 60.392 60.000 0.00 0.00 39.82 3.66
172 173 0.546267 AGGGATGCTCTGTCACCAGT 60.546 55.000 0.00 0.00 39.82 4.00
173 174 0.177604 GAGGGATGCTCTGTCACCAG 59.822 60.000 0.00 0.00 40.25 4.00
174 175 0.545071 TGAGGGATGCTCTGTCACCA 60.545 55.000 0.00 0.00 0.00 4.17
175 176 0.615331 TTGAGGGATGCTCTGTCACC 59.385 55.000 0.00 0.00 0.00 4.02
176 177 2.286872 CATTGAGGGATGCTCTGTCAC 58.713 52.381 0.00 0.00 0.00 3.67
177 178 1.211212 CCATTGAGGGATGCTCTGTCA 59.789 52.381 0.00 0.00 0.00 3.58
178 179 1.211457 ACCATTGAGGGATGCTCTGTC 59.789 52.381 0.00 0.00 43.89 3.51
179 180 1.064906 CACCATTGAGGGATGCTCTGT 60.065 52.381 0.00 0.00 43.89 3.41
180 181 1.676746 CACCATTGAGGGATGCTCTG 58.323 55.000 0.00 0.00 43.89 3.35
181 182 0.549950 CCACCATTGAGGGATGCTCT 59.450 55.000 0.00 0.00 43.89 4.09
182 183 0.548031 TCCACCATTGAGGGATGCTC 59.452 55.000 0.00 0.00 43.89 4.26
183 184 0.257039 GTCCACCATTGAGGGATGCT 59.743 55.000 0.52 0.00 43.89 3.79
184 185 0.034186 TGTCCACCATTGAGGGATGC 60.034 55.000 0.52 0.00 43.89 3.91
185 186 1.561076 TCTGTCCACCATTGAGGGATG 59.439 52.381 0.52 0.00 43.89 3.51
186 187 1.842562 CTCTGTCCACCATTGAGGGAT 59.157 52.381 0.52 0.00 43.89 3.85
187 188 1.279496 CTCTGTCCACCATTGAGGGA 58.721 55.000 0.00 0.00 43.89 4.20
188 189 0.393537 GCTCTGTCCACCATTGAGGG 60.394 60.000 0.00 0.00 43.89 4.30
189 190 0.617413 AGCTCTGTCCACCATTGAGG 59.383 55.000 0.00 0.00 45.67 3.86
190 191 1.678123 CCAGCTCTGTCCACCATTGAG 60.678 57.143 0.00 0.00 0.00 3.02
191 192 0.325933 CCAGCTCTGTCCACCATTGA 59.674 55.000 0.00 0.00 0.00 2.57
192 193 0.679002 CCCAGCTCTGTCCACCATTG 60.679 60.000 0.00 0.00 0.00 2.82
193 194 0.842030 TCCCAGCTCTGTCCACCATT 60.842 55.000 0.00 0.00 0.00 3.16
194 195 0.842030 TTCCCAGCTCTGTCCACCAT 60.842 55.000 0.00 0.00 0.00 3.55
195 196 1.059584 TTTCCCAGCTCTGTCCACCA 61.060 55.000 0.00 0.00 0.00 4.17
196 197 0.110486 TTTTCCCAGCTCTGTCCACC 59.890 55.000 0.00 0.00 0.00 4.61
197 198 1.202818 ACTTTTCCCAGCTCTGTCCAC 60.203 52.381 0.00 0.00 0.00 4.02
198 199 1.140312 ACTTTTCCCAGCTCTGTCCA 58.860 50.000 0.00 0.00 0.00 4.02
199 200 2.701107 GTACTTTTCCCAGCTCTGTCC 58.299 52.381 0.00 0.00 0.00 4.02
200 201 2.338500 CGTACTTTTCCCAGCTCTGTC 58.662 52.381 0.00 0.00 0.00 3.51
201 202 1.002087 CCGTACTTTTCCCAGCTCTGT 59.998 52.381 0.00 0.00 0.00 3.41
202 203 1.726853 CCGTACTTTTCCCAGCTCTG 58.273 55.000 0.00 0.00 0.00 3.35
203 204 0.036294 GCCGTACTTTTCCCAGCTCT 60.036 55.000 0.00 0.00 0.00 4.09
204 205 1.025113 GGCCGTACTTTTCCCAGCTC 61.025 60.000 0.00 0.00 0.00 4.09
205 206 1.002502 GGCCGTACTTTTCCCAGCT 60.003 57.895 0.00 0.00 0.00 4.24
206 207 2.044555 GGGCCGTACTTTTCCCAGC 61.045 63.158 0.00 0.00 38.62 4.85
207 208 1.378119 GGGGCCGTACTTTTCCCAG 60.378 63.158 0.00 0.00 40.53 4.45
208 209 1.844544 GAGGGGCCGTACTTTTCCCA 61.845 60.000 0.00 0.00 40.53 4.37
209 210 1.077930 GAGGGGCCGTACTTTTCCC 60.078 63.158 0.00 0.00 38.03 3.97
210 211 1.449070 CGAGGGGCCGTACTTTTCC 60.449 63.158 0.00 0.00 0.00 3.13
211 212 0.738762 GTCGAGGGGCCGTACTTTTC 60.739 60.000 0.00 0.00 0.00 2.29
212 213 1.294459 GTCGAGGGGCCGTACTTTT 59.706 57.895 0.00 0.00 0.00 2.27
213 214 2.976356 GTCGAGGGGCCGTACTTT 59.024 61.111 0.00 0.00 0.00 2.66
214 215 3.446570 CGTCGAGGGGCCGTACTT 61.447 66.667 0.00 0.00 0.00 2.24
215 216 4.729918 ACGTCGAGGGGCCGTACT 62.730 66.667 10.27 0.00 32.22 2.73
216 217 4.185059 GACGTCGAGGGGCCGTAC 62.185 72.222 10.27 0.00 34.51 3.67
217 218 4.415150 AGACGTCGAGGGGCCGTA 62.415 66.667 10.46 0.00 34.51 4.02
221 222 3.827898 CAGGAGACGTCGAGGGGC 61.828 72.222 10.46 1.17 0.00 5.80
222 223 3.827898 GCAGGAGACGTCGAGGGG 61.828 72.222 10.46 1.47 0.00 4.79
223 224 3.062466 TGCAGGAGACGTCGAGGG 61.062 66.667 10.46 2.96 0.00 4.30
224 225 2.142357 TTGTGCAGGAGACGTCGAGG 62.142 60.000 10.46 3.03 0.00 4.63
225 226 0.318699 TTTGTGCAGGAGACGTCGAG 60.319 55.000 10.46 2.62 0.00 4.04
226 227 0.317160 ATTTGTGCAGGAGACGTCGA 59.683 50.000 10.46 0.00 0.00 4.20
227 228 0.716108 GATTTGTGCAGGAGACGTCG 59.284 55.000 10.46 0.00 0.00 5.12
228 229 1.079503 GGATTTGTGCAGGAGACGTC 58.920 55.000 7.70 7.70 0.00 4.34
229 230 0.396435 TGGATTTGTGCAGGAGACGT 59.604 50.000 0.00 0.00 0.00 4.34
230 231 1.081892 CTGGATTTGTGCAGGAGACG 58.918 55.000 0.00 0.00 0.00 4.18
231 232 0.807496 GCTGGATTTGTGCAGGAGAC 59.193 55.000 0.00 0.00 0.00 3.36
232 233 0.694771 AGCTGGATTTGTGCAGGAGA 59.305 50.000 0.00 0.00 0.00 3.71
233 234 1.201647 CAAGCTGGATTTGTGCAGGAG 59.798 52.381 0.00 0.00 0.00 3.69
234 235 1.250328 CAAGCTGGATTTGTGCAGGA 58.750 50.000 0.00 0.00 0.00 3.86
235 236 0.245539 CCAAGCTGGATTTGTGCAGG 59.754 55.000 0.00 0.00 40.96 4.85
236 237 0.245539 CCCAAGCTGGATTTGTGCAG 59.754 55.000 4.00 0.00 40.96 4.41
237 238 1.186917 CCCCAAGCTGGATTTGTGCA 61.187 55.000 4.00 0.00 40.96 4.57
238 239 0.899717 TCCCCAAGCTGGATTTGTGC 60.900 55.000 4.00 0.00 40.96 4.57
239 240 1.479323 CATCCCCAAGCTGGATTTGTG 59.521 52.381 1.32 0.00 40.96 3.33
240 241 1.620524 CCATCCCCAAGCTGGATTTGT 60.621 52.381 1.32 0.00 40.96 2.83
241 242 1.117150 CCATCCCCAAGCTGGATTTG 58.883 55.000 1.32 0.00 40.96 2.32
242 243 1.009997 TCCATCCCCAAGCTGGATTT 58.990 50.000 1.32 0.00 40.96 2.17
243 244 0.554792 CTCCATCCCCAAGCTGGATT 59.445 55.000 1.32 0.00 40.96 3.01
244 245 1.358830 CCTCCATCCCCAAGCTGGAT 61.359 60.000 0.00 0.00 40.96 3.41
245 246 2.002977 CCTCCATCCCCAAGCTGGA 61.003 63.158 4.00 0.00 40.96 3.86
246 247 2.599597 CCTCCATCCCCAAGCTGG 59.400 66.667 0.00 0.00 37.25 4.85
247 248 1.574526 TTCCCTCCATCCCCAAGCTG 61.575 60.000 0.00 0.00 0.00 4.24
248 249 0.850883 TTTCCCTCCATCCCCAAGCT 60.851 55.000 0.00 0.00 0.00 3.74
249 250 0.684479 GTTTCCCTCCATCCCCAAGC 60.684 60.000 0.00 0.00 0.00 4.01
250 251 0.033109 GGTTTCCCTCCATCCCCAAG 60.033 60.000 0.00 0.00 0.00 3.61
251 252 0.778078 TGGTTTCCCTCCATCCCCAA 60.778 55.000 0.00 0.00 0.00 4.12
252 253 1.151474 TGGTTTCCCTCCATCCCCA 60.151 57.895 0.00 0.00 0.00 4.96
253 254 1.306633 GTGGTTTCCCTCCATCCCC 59.693 63.158 0.00 0.00 37.30 4.81
254 255 1.214992 AGGTGGTTTCCCTCCATCCC 61.215 60.000 2.96 0.00 45.30 3.85
255 256 0.256177 GAGGTGGTTTCCCTCCATCC 59.744 60.000 2.96 0.00 45.30 3.51
256 257 0.991920 TGAGGTGGTTTCCCTCCATC 59.008 55.000 4.12 0.00 46.64 3.51
257 258 0.698818 GTGAGGTGGTTTCCCTCCAT 59.301 55.000 4.12 0.00 46.64 3.41
258 259 0.696143 TGTGAGGTGGTTTCCCTCCA 60.696 55.000 4.12 0.00 46.64 3.86
259 260 0.036875 CTGTGAGGTGGTTTCCCTCC 59.963 60.000 4.12 0.00 46.64 4.30
261 262 0.765510 GACTGTGAGGTGGTTTCCCT 59.234 55.000 0.00 0.00 34.11 4.20
262 263 0.250770 GGACTGTGAGGTGGTTTCCC 60.251 60.000 0.00 0.00 0.00 3.97
263 264 0.602905 CGGACTGTGAGGTGGTTTCC 60.603 60.000 0.00 0.00 0.00 3.13
264 265 1.228657 GCGGACTGTGAGGTGGTTTC 61.229 60.000 0.00 0.00 0.00 2.78
265 266 1.227853 GCGGACTGTGAGGTGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
266 267 2.100879 GAGCGGACTGTGAGGTGGTT 62.101 60.000 0.00 0.00 0.00 3.67
267 268 2.524394 AGCGGACTGTGAGGTGGT 60.524 61.111 0.00 0.00 0.00 4.16
268 269 2.262915 GAGCGGACTGTGAGGTGG 59.737 66.667 0.00 0.00 0.00 4.61
269 270 1.373497 GTGAGCGGACTGTGAGGTG 60.373 63.158 0.00 0.00 0.00 4.00
270 271 2.574955 GGTGAGCGGACTGTGAGGT 61.575 63.158 0.00 0.00 0.00 3.85
271 272 2.099652 TTGGTGAGCGGACTGTGAGG 62.100 60.000 0.00 0.00 0.00 3.86
272 273 0.946221 GTTGGTGAGCGGACTGTGAG 60.946 60.000 0.00 0.00 0.00 3.51
273 274 1.069090 GTTGGTGAGCGGACTGTGA 59.931 57.895 0.00 0.00 0.00 3.58
274 275 2.310233 CGTTGGTGAGCGGACTGTG 61.310 63.158 0.00 0.00 0.00 3.66
275 276 2.029073 CGTTGGTGAGCGGACTGT 59.971 61.111 0.00 0.00 0.00 3.55
282 283 3.670377 GTTGGCCCGTTGGTGAGC 61.670 66.667 0.00 0.00 0.00 4.26
283 284 3.353836 CGTTGGCCCGTTGGTGAG 61.354 66.667 0.00 0.00 0.00 3.51
300 301 3.060615 CAACAGGGCAGCTCCAGC 61.061 66.667 0.00 0.00 42.49 4.85
301 302 3.060615 GCAACAGGGCAGCTCCAG 61.061 66.667 0.00 0.00 36.21 3.86
302 303 4.666253 GGCAACAGGGCAGCTCCA 62.666 66.667 0.00 0.00 42.77 3.86
312 313 4.012895 GTGTCACGGCGGCAACAG 62.013 66.667 13.24 0.00 0.00 3.16
320 321 3.936203 TCTGGGTGGTGTCACGGC 61.936 66.667 0.00 0.00 44.50 5.68
321 322 2.030562 GTCTGGGTGGTGTCACGG 59.969 66.667 0.00 0.00 44.50 4.94
322 323 2.030562 GGTCTGGGTGGTGTCACG 59.969 66.667 0.00 0.00 44.50 4.35
323 324 1.227853 GTGGTCTGGGTGGTGTCAC 60.228 63.158 0.00 0.00 42.91 3.67
324 325 1.383943 AGTGGTCTGGGTGGTGTCA 60.384 57.895 0.00 0.00 0.00 3.58
325 326 1.071471 CAGTGGTCTGGGTGGTGTC 59.929 63.158 0.00 0.00 37.97 3.67
326 327 3.120086 GCAGTGGTCTGGGTGGTGT 62.120 63.158 0.00 0.00 41.57 4.16
327 328 2.281761 GCAGTGGTCTGGGTGGTG 60.282 66.667 0.00 0.00 41.57 4.17
328 329 3.570212 GGCAGTGGTCTGGGTGGT 61.570 66.667 0.00 0.00 41.57 4.16
329 330 2.910737 ATGGCAGTGGTCTGGGTGG 61.911 63.158 0.00 0.00 41.57 4.61
330 331 1.676635 CATGGCAGTGGTCTGGGTG 60.677 63.158 0.00 0.00 41.57 4.61
331 332 2.759114 CATGGCAGTGGTCTGGGT 59.241 61.111 0.00 0.00 41.57 4.51
332 333 2.044650 CCATGGCAGTGGTCTGGG 60.045 66.667 0.00 0.00 41.57 4.45
333 334 2.044650 CCCATGGCAGTGGTCTGG 60.045 66.667 6.09 5.58 41.57 3.86
353 354 1.026182 TCTGAATGTGGCGTGATGGC 61.026 55.000 0.00 0.00 45.12 4.40
354 355 1.399440 CTTCTGAATGTGGCGTGATGG 59.601 52.381 0.00 0.00 0.00 3.51
355 356 1.399440 CCTTCTGAATGTGGCGTGATG 59.601 52.381 0.00 0.00 0.00 3.07
356 357 1.742761 CCTTCTGAATGTGGCGTGAT 58.257 50.000 0.00 0.00 0.00 3.06
357 358 0.955428 GCCTTCTGAATGTGGCGTGA 60.955 55.000 3.74 0.00 35.79 4.35
358 359 1.503542 GCCTTCTGAATGTGGCGTG 59.496 57.895 3.74 0.00 35.79 5.34
359 360 1.675641 GGCCTTCTGAATGTGGCGT 60.676 57.895 11.57 0.00 45.75 5.68
360 361 2.409870 GGGCCTTCTGAATGTGGCG 61.410 63.158 0.84 0.00 45.75 5.69
361 362 2.409870 CGGGCCTTCTGAATGTGGC 61.410 63.158 0.84 9.90 44.22 5.01
362 363 0.107017 ATCGGGCCTTCTGAATGTGG 60.107 55.000 0.84 0.00 33.91 4.17
363 364 1.303309 GATCGGGCCTTCTGAATGTG 58.697 55.000 0.84 0.00 33.91 3.21
364 365 0.911769 TGATCGGGCCTTCTGAATGT 59.088 50.000 0.84 0.00 33.91 2.71
365 366 2.149578 GATGATCGGGCCTTCTGAATG 58.850 52.381 0.84 0.00 33.91 2.67
366 367 1.770658 TGATGATCGGGCCTTCTGAAT 59.229 47.619 0.84 0.00 33.91 2.57
367 368 1.203237 TGATGATCGGGCCTTCTGAA 58.797 50.000 0.84 0.00 33.91 3.02
368 369 1.071228 CATGATGATCGGGCCTTCTGA 59.929 52.381 0.84 0.00 34.85 3.27
369 370 1.520494 CATGATGATCGGGCCTTCTG 58.480 55.000 0.84 0.00 0.00 3.02
370 371 0.250640 GCATGATGATCGGGCCTTCT 60.251 55.000 0.84 0.00 0.00 2.85
371 372 0.535780 TGCATGATGATCGGGCCTTC 60.536 55.000 0.84 0.00 0.00 3.46
372 373 0.536687 CTGCATGATGATCGGGCCTT 60.537 55.000 0.84 0.00 0.00 4.35
373 374 1.072678 CTGCATGATGATCGGGCCT 59.927 57.895 0.84 0.00 0.00 5.19
374 375 1.071987 TCTGCATGATGATCGGGCC 59.928 57.895 0.00 0.00 0.00 5.80
375 376 0.250209 AGTCTGCATGATGATCGGGC 60.250 55.000 0.00 1.74 0.00 6.13
376 377 1.069668 TCAGTCTGCATGATGATCGGG 59.930 52.381 0.00 0.00 0.00 5.14
377 378 2.521105 TCAGTCTGCATGATGATCGG 57.479 50.000 0.00 0.00 0.00 4.18
378 379 4.308265 AGAATCAGTCTGCATGATGATCG 58.692 43.478 2.12 0.00 37.46 3.69
379 380 6.260271 TCAAAGAATCAGTCTGCATGATGATC 59.740 38.462 2.12 0.00 37.46 2.92
380 381 6.038382 GTCAAAGAATCAGTCTGCATGATGAT 59.962 38.462 2.12 2.45 37.46 2.45
381 382 5.353400 GTCAAAGAATCAGTCTGCATGATGA 59.647 40.000 2.12 0.10 37.46 2.92
382 383 5.123344 TGTCAAAGAATCAGTCTGCATGATG 59.877 40.000 2.12 0.00 37.46 3.07
383 384 5.250982 TGTCAAAGAATCAGTCTGCATGAT 58.749 37.500 0.00 0.00 39.06 2.45
384 385 4.644498 TGTCAAAGAATCAGTCTGCATGA 58.356 39.130 0.00 0.00 36.40 3.07
385 386 4.672024 GCTGTCAAAGAATCAGTCTGCATG 60.672 45.833 0.00 0.00 36.40 4.06
386 387 3.439476 GCTGTCAAAGAATCAGTCTGCAT 59.561 43.478 0.00 0.00 36.40 3.96
387 388 2.810274 GCTGTCAAAGAATCAGTCTGCA 59.190 45.455 0.00 0.00 36.40 4.41
388 389 2.159734 CGCTGTCAAAGAATCAGTCTGC 60.160 50.000 0.00 0.00 36.40 4.26
389 390 2.159734 GCGCTGTCAAAGAATCAGTCTG 60.160 50.000 0.00 0.00 36.40 3.51
390 391 2.072298 GCGCTGTCAAAGAATCAGTCT 58.928 47.619 0.00 0.00 38.69 3.24
391 392 2.072298 AGCGCTGTCAAAGAATCAGTC 58.928 47.619 10.39 0.00 0.00 3.51
392 393 2.175878 AGCGCTGTCAAAGAATCAGT 57.824 45.000 10.39 0.00 0.00 3.41
393 394 3.681897 AGTAAGCGCTGTCAAAGAATCAG 59.318 43.478 12.58 0.00 0.00 2.90
394 395 3.664107 AGTAAGCGCTGTCAAAGAATCA 58.336 40.909 12.58 0.00 0.00 2.57
395 396 4.152402 TGAAGTAAGCGCTGTCAAAGAATC 59.848 41.667 12.58 0.88 0.00 2.52
396 397 4.065088 TGAAGTAAGCGCTGTCAAAGAAT 58.935 39.130 12.58 0.00 0.00 2.40
397 398 3.462982 TGAAGTAAGCGCTGTCAAAGAA 58.537 40.909 12.58 0.00 0.00 2.52
398 399 3.059884 CTGAAGTAAGCGCTGTCAAAGA 58.940 45.455 12.58 0.00 0.00 2.52
399 400 2.802816 ACTGAAGTAAGCGCTGTCAAAG 59.197 45.455 12.58 7.73 0.00 2.77
400 401 2.800544 GACTGAAGTAAGCGCTGTCAAA 59.199 45.455 12.58 0.00 32.76 2.69
401 402 2.223947 TGACTGAAGTAAGCGCTGTCAA 60.224 45.455 18.67 6.09 37.49 3.18
402 403 1.339929 TGACTGAAGTAAGCGCTGTCA 59.660 47.619 12.58 15.76 37.89 3.58
403 404 1.721926 GTGACTGAAGTAAGCGCTGTC 59.278 52.381 12.58 12.99 0.00 3.51
404 405 1.068588 TGTGACTGAAGTAAGCGCTGT 59.931 47.619 12.58 1.18 0.00 4.40
405 406 1.457303 GTGTGACTGAAGTAAGCGCTG 59.543 52.381 12.58 0.00 0.00 5.18
406 407 1.784525 GTGTGACTGAAGTAAGCGCT 58.215 50.000 2.64 2.64 0.00 5.92
407 408 0.435008 CGTGTGACTGAAGTAAGCGC 59.565 55.000 0.00 0.00 0.00 5.92
408 409 0.435008 GCGTGTGACTGAAGTAAGCG 59.565 55.000 0.00 0.00 0.00 4.68
409 410 0.435008 CGCGTGTGACTGAAGTAAGC 59.565 55.000 0.00 0.00 0.00 3.09
410 411 2.046283 TCGCGTGTGACTGAAGTAAG 57.954 50.000 5.77 0.00 0.00 2.34
411 412 2.717580 ATCGCGTGTGACTGAAGTAA 57.282 45.000 5.77 0.00 0.00 2.24
412 413 2.477357 GCTATCGCGTGTGACTGAAGTA 60.477 50.000 5.77 0.00 0.00 2.24
413 414 1.732732 GCTATCGCGTGTGACTGAAGT 60.733 52.381 5.77 0.00 0.00 3.01
414 415 0.917259 GCTATCGCGTGTGACTGAAG 59.083 55.000 5.77 0.00 0.00 3.02
415 416 0.457853 GGCTATCGCGTGTGACTGAA 60.458 55.000 5.77 0.00 36.88 3.02
416 417 1.138883 GGCTATCGCGTGTGACTGA 59.861 57.895 5.77 0.00 36.88 3.41
417 418 1.139734 AGGCTATCGCGTGTGACTG 59.860 57.895 5.77 0.00 36.88 3.51
418 419 1.139734 CAGGCTATCGCGTGTGACT 59.860 57.895 5.77 1.24 44.64 3.41
419 420 3.693245 CAGGCTATCGCGTGTGAC 58.307 61.111 5.77 0.00 44.64 3.67
424 425 2.645567 CGATCCAGGCTATCGCGT 59.354 61.111 5.77 0.00 39.70 6.01
427 428 1.154131 CGAGCGATCCAGGCTATCG 60.154 63.158 13.90 13.90 46.94 2.92
428 429 1.214062 CCGAGCGATCCAGGCTATC 59.786 63.158 0.00 0.00 41.72 2.08
429 430 2.936912 GCCGAGCGATCCAGGCTAT 61.937 63.158 11.72 0.00 45.67 2.97
430 431 3.606662 GCCGAGCGATCCAGGCTA 61.607 66.667 11.72 0.00 45.67 3.93
441 442 0.249489 AAGATGACCATACGCCGAGC 60.249 55.000 0.00 0.00 0.00 5.03
442 443 1.202417 ACAAGATGACCATACGCCGAG 60.202 52.381 0.00 0.00 0.00 4.63
443 444 0.821517 ACAAGATGACCATACGCCGA 59.178 50.000 0.00 0.00 0.00 5.54
444 445 1.327460 CAACAAGATGACCATACGCCG 59.673 52.381 0.00 0.00 0.00 6.46
445 446 2.356135 ACAACAAGATGACCATACGCC 58.644 47.619 0.00 0.00 0.00 5.68
446 447 3.435327 TCAACAACAAGATGACCATACGC 59.565 43.478 0.00 0.00 0.00 4.42
447 448 4.929211 TCTCAACAACAAGATGACCATACG 59.071 41.667 0.00 0.00 0.00 3.06
448 449 6.992063 ATCTCAACAACAAGATGACCATAC 57.008 37.500 0.00 0.00 31.09 2.39
449 450 9.513906 TTTAATCTCAACAACAAGATGACCATA 57.486 29.630 0.00 0.00 32.62 2.74
450 451 8.299570 GTTTAATCTCAACAACAAGATGACCAT 58.700 33.333 0.00 0.00 32.62 3.55
451 452 7.284261 TGTTTAATCTCAACAACAAGATGACCA 59.716 33.333 0.00 0.00 32.62 4.02
452 453 7.591426 GTGTTTAATCTCAACAACAAGATGACC 59.409 37.037 0.00 0.00 35.91 4.02
453 454 8.345565 AGTGTTTAATCTCAACAACAAGATGAC 58.654 33.333 0.00 0.00 35.91 3.06
454 455 8.450578 AGTGTTTAATCTCAACAACAAGATGA 57.549 30.769 0.00 0.00 35.91 2.92
468 469 8.971073 CCCCATCTTTCATTAAGTGTTTAATCT 58.029 33.333 0.00 0.00 37.38 2.40
469 470 8.966868 TCCCCATCTTTCATTAAGTGTTTAATC 58.033 33.333 0.00 0.00 37.38 1.75
470 471 8.749354 GTCCCCATCTTTCATTAAGTGTTTAAT 58.251 33.333 0.00 0.00 39.49 1.40
471 472 7.947890 AGTCCCCATCTTTCATTAAGTGTTTAA 59.052 33.333 0.00 0.00 35.28 1.52
472 473 7.466804 AGTCCCCATCTTTCATTAAGTGTTTA 58.533 34.615 0.00 0.00 35.28 2.01
473 474 6.314917 AGTCCCCATCTTTCATTAAGTGTTT 58.685 36.000 0.00 0.00 35.28 2.83
474 475 5.892348 AGTCCCCATCTTTCATTAAGTGTT 58.108 37.500 0.00 0.00 35.28 3.32
475 476 5.520748 AGTCCCCATCTTTCATTAAGTGT 57.479 39.130 0.00 0.00 35.28 3.55
476 477 6.840780 AAAGTCCCCATCTTTCATTAAGTG 57.159 37.500 0.00 0.00 35.28 3.16
477 478 8.336235 TCATAAAGTCCCCATCTTTCATTAAGT 58.664 33.333 0.00 0.00 36.65 2.24
478 479 8.624776 GTCATAAAGTCCCCATCTTTCATTAAG 58.375 37.037 0.00 0.00 36.65 1.85
479 480 7.559897 GGTCATAAAGTCCCCATCTTTCATTAA 59.440 37.037 0.00 0.00 36.65 1.40
480 481 7.060421 GGTCATAAAGTCCCCATCTTTCATTA 58.940 38.462 0.00 0.00 36.65 1.90
481 482 5.893824 GGTCATAAAGTCCCCATCTTTCATT 59.106 40.000 0.00 0.00 36.65 2.57
482 483 5.194537 AGGTCATAAAGTCCCCATCTTTCAT 59.805 40.000 0.00 0.00 36.65 2.57
483 484 4.540099 AGGTCATAAAGTCCCCATCTTTCA 59.460 41.667 0.00 0.00 36.65 2.69
484 485 5.117406 AGGTCATAAAGTCCCCATCTTTC 57.883 43.478 0.00 0.00 36.65 2.62
485 486 5.970640 TCTAGGTCATAAAGTCCCCATCTTT 59.029 40.000 0.00 0.00 38.45 2.52
486 487 5.538877 TCTAGGTCATAAAGTCCCCATCTT 58.461 41.667 0.00 0.00 0.00 2.40
487 488 5.157770 TCTAGGTCATAAAGTCCCCATCT 57.842 43.478 0.00 0.00 0.00 2.90
488 489 5.888982 TTCTAGGTCATAAAGTCCCCATC 57.111 43.478 0.00 0.00 0.00 3.51
489 490 6.652205 TTTTCTAGGTCATAAAGTCCCCAT 57.348 37.500 0.00 0.00 0.00 4.00
490 491 6.652205 ATTTTCTAGGTCATAAAGTCCCCA 57.348 37.500 0.00 0.00 0.00 4.96
491 492 7.630728 GCAAATTTTCTAGGTCATAAAGTCCCC 60.631 40.741 0.00 0.00 0.00 4.81
492 493 7.258441 GCAAATTTTCTAGGTCATAAAGTCCC 58.742 38.462 0.00 0.00 0.00 4.46
493 494 7.258441 GGCAAATTTTCTAGGTCATAAAGTCC 58.742 38.462 0.00 0.00 0.00 3.85
494 495 6.967199 CGGCAAATTTTCTAGGTCATAAAGTC 59.033 38.462 0.00 0.00 0.00 3.01
495 496 6.433093 ACGGCAAATTTTCTAGGTCATAAAGT 59.567 34.615 0.00 0.00 0.00 2.66
496 497 6.747280 CACGGCAAATTTTCTAGGTCATAAAG 59.253 38.462 0.00 0.00 0.00 1.85
497 498 6.207810 ACACGGCAAATTTTCTAGGTCATAAA 59.792 34.615 0.00 0.00 0.00 1.40
498 499 5.708230 ACACGGCAAATTTTCTAGGTCATAA 59.292 36.000 0.00 0.00 0.00 1.90
499 500 5.123186 CACACGGCAAATTTTCTAGGTCATA 59.877 40.000 0.00 0.00 0.00 2.15
500 501 4.079253 ACACGGCAAATTTTCTAGGTCAT 58.921 39.130 0.00 0.00 0.00 3.06
501 502 3.252215 CACACGGCAAATTTTCTAGGTCA 59.748 43.478 0.00 0.00 0.00 4.02
502 503 3.821841 CACACGGCAAATTTTCTAGGTC 58.178 45.455 0.00 0.00 0.00 3.85
503 504 2.030274 GCACACGGCAAATTTTCTAGGT 60.030 45.455 0.00 0.00 43.97 3.08
504 505 2.595386 GCACACGGCAAATTTTCTAGG 58.405 47.619 0.00 0.00 43.97 3.02
516 517 1.448922 TACCCTGTTTTGCACACGGC 61.449 55.000 0.00 0.00 45.13 5.68
517 518 0.309612 GTACCCTGTTTTGCACACGG 59.690 55.000 0.00 0.00 37.53 4.94
518 519 0.309612 GGTACCCTGTTTTGCACACG 59.690 55.000 0.00 0.00 0.00 4.49
519 520 1.336755 CTGGTACCCTGTTTTGCACAC 59.663 52.381 10.07 0.00 0.00 3.82
520 521 1.213182 TCTGGTACCCTGTTTTGCACA 59.787 47.619 10.07 0.00 0.00 4.57
521 522 1.607148 GTCTGGTACCCTGTTTTGCAC 59.393 52.381 10.07 0.00 0.00 4.57
522 523 1.477923 GGTCTGGTACCCTGTTTTGCA 60.478 52.381 10.07 0.00 43.16 4.08
523 524 1.244816 GGTCTGGTACCCTGTTTTGC 58.755 55.000 10.07 0.00 43.16 3.68
524 525 1.519408 CGGTCTGGTACCCTGTTTTG 58.481 55.000 10.07 0.00 46.62 2.44
525 526 0.250597 GCGGTCTGGTACCCTGTTTT 60.251 55.000 10.07 0.00 46.62 2.43
526 527 1.373812 GCGGTCTGGTACCCTGTTT 59.626 57.895 10.07 0.00 46.62 2.83
527 528 2.590114 GGCGGTCTGGTACCCTGTT 61.590 63.158 10.07 0.00 46.62 3.16
528 529 3.001406 GGCGGTCTGGTACCCTGT 61.001 66.667 10.07 0.00 46.62 4.00
529 530 2.683933 AGGCGGTCTGGTACCCTG 60.684 66.667 10.07 2.26 46.62 4.45
530 531 2.683933 CAGGCGGTCTGGTACCCT 60.684 66.667 10.07 0.00 46.62 4.34
537 538 0.392998 ATAAACAGCCAGGCGGTCTG 60.393 55.000 18.45 7.30 43.00 3.51
538 539 1.139058 CTATAAACAGCCAGGCGGTCT 59.861 52.381 18.45 6.75 35.69 3.85
539 540 1.583054 CTATAAACAGCCAGGCGGTC 58.417 55.000 18.45 0.00 35.69 4.79
540 541 0.180406 CCTATAAACAGCCAGGCGGT 59.820 55.000 12.08 12.08 38.82 5.68
541 542 1.166531 GCCTATAAACAGCCAGGCGG 61.167 60.000 10.48 10.48 43.80 6.13
542 543 2.321213 GCCTATAAACAGCCAGGCG 58.679 57.895 5.55 3.56 43.80 5.52
548 549 4.399303 ACATTCAGTTGGCCTATAAACAGC 59.601 41.667 3.32 0.00 0.00 4.40
549 550 5.163622 CCACATTCAGTTGGCCTATAAACAG 60.164 44.000 3.32 0.00 0.00 3.16
550 551 4.704540 CCACATTCAGTTGGCCTATAAACA 59.295 41.667 3.32 0.00 0.00 2.83
551 552 4.440112 GCCACATTCAGTTGGCCTATAAAC 60.440 45.833 3.32 0.00 38.01 2.01
552 553 3.699038 GCCACATTCAGTTGGCCTATAAA 59.301 43.478 3.32 0.00 38.01 1.40
553 554 3.287222 GCCACATTCAGTTGGCCTATAA 58.713 45.455 3.32 0.00 38.01 0.98
554 555 2.240921 TGCCACATTCAGTTGGCCTATA 59.759 45.455 3.32 0.00 41.09 1.31
555 556 1.005805 TGCCACATTCAGTTGGCCTAT 59.994 47.619 3.32 0.00 41.09 2.57
556 557 0.403655 TGCCACATTCAGTTGGCCTA 59.596 50.000 3.32 0.00 41.09 3.93
557 558 1.153524 TGCCACATTCAGTTGGCCT 59.846 52.632 3.32 0.00 41.09 5.19
558 559 1.181098 AGTGCCACATTCAGTTGGCC 61.181 55.000 10.03 0.00 41.09 5.36
559 560 1.200020 GTAGTGCCACATTCAGTTGGC 59.800 52.381 5.63 5.63 41.71 4.52
560 561 2.485426 CAGTAGTGCCACATTCAGTTGG 59.515 50.000 0.00 0.00 0.00 3.77
561 562 2.485426 CCAGTAGTGCCACATTCAGTTG 59.515 50.000 0.00 0.00 0.00 3.16
562 563 2.783135 CCAGTAGTGCCACATTCAGTT 58.217 47.619 0.00 0.00 0.00 3.16
563 564 1.611673 GCCAGTAGTGCCACATTCAGT 60.612 52.381 0.00 0.00 0.00 3.41
564 565 1.089920 GCCAGTAGTGCCACATTCAG 58.910 55.000 0.00 0.00 0.00 3.02
565 566 0.692476 AGCCAGTAGTGCCACATTCA 59.308 50.000 0.00 0.00 0.00 2.57
566 567 1.089920 CAGCCAGTAGTGCCACATTC 58.910 55.000 0.00 0.00 0.00 2.67
567 568 0.401738 ACAGCCAGTAGTGCCACATT 59.598 50.000 0.00 0.00 0.00 2.71
568 569 1.275666 TACAGCCAGTAGTGCCACAT 58.724 50.000 0.00 0.00 0.00 3.21
569 570 1.066215 CATACAGCCAGTAGTGCCACA 60.066 52.381 0.00 0.00 35.85 4.17
570 571 1.656652 CATACAGCCAGTAGTGCCAC 58.343 55.000 0.00 0.00 35.85 5.01
571 572 0.541392 CCATACAGCCAGTAGTGCCA 59.459 55.000 0.00 0.00 35.85 4.92
572 573 0.815615 GCCATACAGCCAGTAGTGCC 60.816 60.000 0.00 0.00 35.85 5.01
573 574 0.179000 AGCCATACAGCCAGTAGTGC 59.821 55.000 0.00 3.62 35.85 4.40
574 575 2.430694 TGTAGCCATACAGCCAGTAGTG 59.569 50.000 0.00 0.00 36.98 2.74
575 576 2.747177 TGTAGCCATACAGCCAGTAGT 58.253 47.619 0.00 0.00 36.98 2.73
576 577 3.321968 TGATGTAGCCATACAGCCAGTAG 59.678 47.826 1.64 0.00 45.68 2.57
577 578 3.304829 TGATGTAGCCATACAGCCAGTA 58.695 45.455 1.64 0.00 45.68 2.74
578 579 2.118679 TGATGTAGCCATACAGCCAGT 58.881 47.619 1.64 0.00 45.68 4.00
579 580 2.916702 TGATGTAGCCATACAGCCAG 57.083 50.000 1.64 0.00 45.68 4.85
580 581 3.479489 CAATGATGTAGCCATACAGCCA 58.521 45.455 1.64 0.00 45.68 4.75
581 582 2.227388 GCAATGATGTAGCCATACAGCC 59.773 50.000 1.64 0.00 45.68 4.85
582 583 2.227388 GGCAATGATGTAGCCATACAGC 59.773 50.000 0.00 0.00 46.30 4.40
590 591 3.019564 ACAAGAAGGGCAATGATGTAGC 58.980 45.455 0.00 0.00 0.00 3.58
591 592 6.543465 TCAATACAAGAAGGGCAATGATGTAG 59.457 38.462 0.00 0.00 0.00 2.74
592 593 6.422333 TCAATACAAGAAGGGCAATGATGTA 58.578 36.000 0.00 0.00 0.00 2.29
593 594 5.263599 TCAATACAAGAAGGGCAATGATGT 58.736 37.500 0.00 0.00 0.00 3.06
594 595 5.221185 CCTCAATACAAGAAGGGCAATGATG 60.221 44.000 0.00 0.00 0.00 3.07
595 596 4.891756 CCTCAATACAAGAAGGGCAATGAT 59.108 41.667 0.00 0.00 0.00 2.45
596 597 4.272489 CCTCAATACAAGAAGGGCAATGA 58.728 43.478 0.00 0.00 0.00 2.57
597 598 3.181483 GCCTCAATACAAGAAGGGCAATG 60.181 47.826 0.00 0.00 38.16 2.82
598 599 3.026694 GCCTCAATACAAGAAGGGCAAT 58.973 45.455 0.00 0.00 38.16 3.56
599 600 2.041620 AGCCTCAATACAAGAAGGGCAA 59.958 45.455 0.00 0.00 40.40 4.52
600 601 1.635487 AGCCTCAATACAAGAAGGGCA 59.365 47.619 0.00 0.00 40.40 5.36
601 602 2.092699 AGAGCCTCAATACAAGAAGGGC 60.093 50.000 0.00 0.00 38.50 5.19
602 603 3.922171 AGAGCCTCAATACAAGAAGGG 57.078 47.619 0.00 0.00 0.00 3.95
603 604 5.620879 GCAAAAGAGCCTCAATACAAGAAGG 60.621 44.000 0.00 0.00 0.00 3.46
604 605 5.397326 GCAAAAGAGCCTCAATACAAGAAG 58.603 41.667 0.00 0.00 0.00 2.85
605 606 5.376854 GCAAAAGAGCCTCAATACAAGAA 57.623 39.130 0.00 0.00 0.00 2.52
618 619 1.678101 ACAGTCAAGTGGCAAAAGAGC 59.322 47.619 0.00 0.00 0.00 4.09
619 620 4.261197 GGTTACAGTCAAGTGGCAAAAGAG 60.261 45.833 0.00 0.00 0.00 2.85
620 621 3.630312 GGTTACAGTCAAGTGGCAAAAGA 59.370 43.478 0.00 0.00 0.00 2.52
621 622 3.632145 AGGTTACAGTCAAGTGGCAAAAG 59.368 43.478 0.00 0.00 0.00 2.27
622 623 3.626930 AGGTTACAGTCAAGTGGCAAAA 58.373 40.909 0.00 0.00 0.00 2.44
623 624 3.290948 AGGTTACAGTCAAGTGGCAAA 57.709 42.857 0.00 0.00 0.00 3.68
624 625 3.290948 AAGGTTACAGTCAAGTGGCAA 57.709 42.857 0.00 0.00 0.00 4.52
625 626 4.041075 TGATAAGGTTACAGTCAAGTGGCA 59.959 41.667 0.00 0.00 0.00 4.92
626 627 4.575885 TGATAAGGTTACAGTCAAGTGGC 58.424 43.478 0.00 0.00 0.00 5.01
627 628 8.830580 CATAATGATAAGGTTACAGTCAAGTGG 58.169 37.037 0.00 0.00 0.00 4.00
628 629 9.599866 TCATAATGATAAGGTTACAGTCAAGTG 57.400 33.333 0.00 0.00 0.00 3.16
673 674 9.830975 ATGCCTTTACAAGAAAAATTTACAAGT 57.169 25.926 0.00 0.00 0.00 3.16
675 676 9.606631 ACATGCCTTTACAAGAAAAATTTACAA 57.393 25.926 0.00 0.00 0.00 2.41
676 677 9.039870 CACATGCCTTTACAAGAAAAATTTACA 57.960 29.630 0.00 0.00 0.00 2.41
677 678 9.040939 ACACATGCCTTTACAAGAAAAATTTAC 57.959 29.630 0.00 0.00 0.00 2.01
678 679 9.606631 AACACATGCCTTTACAAGAAAAATTTA 57.393 25.926 0.00 0.00 0.00 1.40
679 680 8.504812 AACACATGCCTTTACAAGAAAAATTT 57.495 26.923 0.00 0.00 0.00 1.82
680 681 9.777297 ATAACACATGCCTTTACAAGAAAAATT 57.223 25.926 0.00 0.00 0.00 1.82
681 682 9.777297 AATAACACATGCCTTTACAAGAAAAAT 57.223 25.926 0.00 0.00 0.00 1.82
682 683 9.606631 AAATAACACATGCCTTTACAAGAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
733 734 1.806542 CATTTCCGAATGGCTATCCCG 59.193 52.381 0.00 0.00 39.17 5.14
815 819 1.135915 CTATAGGGCTAGCTCGCATGG 59.864 57.143 15.72 7.89 0.00 3.66
821 825 3.245336 ACCAGGTACTATAGGGCTAGCTC 60.245 52.174 15.72 11.51 36.02 4.09
831 836 5.113383 CGTTGCATGAAACCAGGTACTATA 58.887 41.667 11.12 0.00 36.02 1.31
832 837 3.938963 CGTTGCATGAAACCAGGTACTAT 59.061 43.478 11.12 0.00 36.02 2.12
864 869 1.534729 AGTTGGCTTTGGATCGAACC 58.465 50.000 4.46 4.46 0.00 3.62
1022 1028 1.480137 AGAGCGTGAGGAAGATGAAGG 59.520 52.381 0.00 0.00 0.00 3.46
1027 1051 1.620819 ACACAAGAGCGTGAGGAAGAT 59.379 47.619 0.00 0.00 39.34 2.40
1057 1081 2.609737 CGTTGACAGGTGAAGGGAGTAC 60.610 54.545 0.00 0.00 0.00 2.73
1059 1083 0.393077 CGTTGACAGGTGAAGGGAGT 59.607 55.000 0.00 0.00 0.00 3.85
1084 1108 2.174639 TGCCATGGATACGAGGGAAATT 59.825 45.455 18.40 0.00 42.51 1.82
1164 1188 1.675641 GCCATTGCCAGAACCGTCT 60.676 57.895 0.00 0.00 32.85 4.18
1301 1328 3.699894 CAGCACTGCCTCCCTCGT 61.700 66.667 0.00 0.00 0.00 4.18
1590 1647 2.757077 CTTCCGGAACCTTGGCCT 59.243 61.111 14.35 0.00 0.00 5.19
1727 1788 2.238942 ATGCATGCATGGCAATTGAG 57.761 45.000 31.74 0.00 45.60 3.02
1749 1812 2.100916 TGCTTCCTACGTGGATTAGCTC 59.899 50.000 21.08 5.23 44.85 4.09
1815 1880 3.906720 ACAGGTTTACACACTGACACT 57.093 42.857 0.00 0.00 36.17 3.55
1816 1881 4.510340 CCTTACAGGTTTACACACTGACAC 59.490 45.833 0.00 0.00 36.17 3.67
1817 1882 4.443739 CCCTTACAGGTTTACACACTGACA 60.444 45.833 0.00 0.00 36.17 3.58
1818 1883 4.062991 CCCTTACAGGTTTACACACTGAC 58.937 47.826 0.00 0.00 36.17 3.51
1819 1884 3.071892 CCCCTTACAGGTTTACACACTGA 59.928 47.826 0.00 0.00 36.17 3.41
1820 1885 3.181448 ACCCCTTACAGGTTTACACACTG 60.181 47.826 0.00 0.00 32.05 3.66
1830 1895 0.761702 ACACGTCACCCCTTACAGGT 60.762 55.000 0.00 0.00 38.48 4.00
1864 1929 4.046938 ACTTCATACTCGTGCCTACATG 57.953 45.455 0.00 0.00 0.00 3.21
1866 1931 4.439700 GCTTACTTCATACTCGTGCCTACA 60.440 45.833 0.00 0.00 0.00 2.74
1868 1933 3.952323 AGCTTACTTCATACTCGTGCCTA 59.048 43.478 0.00 0.00 0.00 3.93
1869 1934 2.761208 AGCTTACTTCATACTCGTGCCT 59.239 45.455 0.00 0.00 0.00 4.75
1870 1935 3.166489 AGCTTACTTCATACTCGTGCC 57.834 47.619 0.00 0.00 0.00 5.01
1874 1945 4.380087 CGCACATAGCTTACTTCATACTCG 59.620 45.833 0.00 0.00 42.61 4.18
1884 1955 2.927477 TGCTTACACGCACATAGCTTAC 59.073 45.455 0.00 0.00 42.61 2.34
1896 1971 7.964559 CCCATATTATTCATCAATGCTTACACG 59.035 37.037 0.00 0.00 0.00 4.49
1954 2029 9.822185 AAATTCTTTTCTTGCTGTGTAGAAAAT 57.178 25.926 9.61 0.00 44.69 1.82
1992 2074 5.437060 ACAATGGTTATAGCGAATGGAGTT 58.563 37.500 0.00 0.00 0.00 3.01
1997 2079 4.318760 CCGTGACAATGGTTATAGCGAATG 60.319 45.833 0.00 0.00 0.00 2.67
2005 2087 1.280710 TCAGGCCGTGACAATGGTTAT 59.719 47.619 0.00 0.00 34.60 1.89
2006 2088 0.687920 TCAGGCCGTGACAATGGTTA 59.312 50.000 0.00 0.00 34.60 2.85
2020 2105 2.126424 GTGAGACGACCGTCAGGC 60.126 66.667 22.26 12.50 46.76 4.85
2021 2106 1.524863 AAGGTGAGACGACCGTCAGG 61.525 60.000 22.26 0.00 46.76 3.86
2022 2107 0.109689 GAAGGTGAGACGACCGTCAG 60.110 60.000 22.26 0.04 46.76 3.51
2024 2109 0.597072 AAGAAGGTGAGACGACCGTC 59.403 55.000 14.03 14.03 42.87 4.79
2051 2138 2.418669 TGAGAAGGAAGAAGGTTGGGT 58.581 47.619 0.00 0.00 0.00 4.51
2055 2142 4.080072 GGATGGATGAGAAGGAAGAAGGTT 60.080 45.833 0.00 0.00 0.00 3.50
2084 2171 4.966787 TTGGTTGGAGGGCGGCAC 62.967 66.667 12.47 0.00 0.00 5.01
2169 2256 5.243703 TACAAAGGGATGTTCGGTACGGG 62.244 52.174 0.05 0.00 43.18 5.28
2174 2261 4.830600 ACAAATTACAAAGGGATGTTCGGT 59.169 37.500 0.00 0.00 34.75 4.69
2187 2274 8.943594 AAGAATGGTAAGGGTACAAATTACAA 57.056 30.769 13.04 5.48 32.27 2.41
2189 2276 8.803397 AGAAGAATGGTAAGGGTACAAATTAC 57.197 34.615 0.00 0.63 31.21 1.89
2190 2277 8.050930 GGAGAAGAATGGTAAGGGTACAAATTA 58.949 37.037 0.00 0.00 31.21 1.40
2191 2278 6.890268 GGAGAAGAATGGTAAGGGTACAAATT 59.110 38.462 0.00 0.00 31.21 1.82
2192 2279 6.424032 GGAGAAGAATGGTAAGGGTACAAAT 58.576 40.000 0.00 0.00 31.21 2.32
2193 2280 5.570034 CGGAGAAGAATGGTAAGGGTACAAA 60.570 44.000 0.00 0.00 31.21 2.83
2194 2281 4.081309 CGGAGAAGAATGGTAAGGGTACAA 60.081 45.833 0.00 0.00 31.21 2.41
2195 2282 3.449737 CGGAGAAGAATGGTAAGGGTACA 59.550 47.826 0.00 0.00 31.21 2.90
2196 2283 3.703052 TCGGAGAAGAATGGTAAGGGTAC 59.297 47.826 0.00 0.00 0.00 3.34
2204 2291 1.218316 GGCGTCGGAGAAGAATGGT 59.782 57.895 0.00 0.00 38.59 3.55
2241 2328 2.031163 GTTGACAGCTCGGGTGCT 59.969 61.111 3.45 0.00 45.18 4.40
2242 2329 3.050275 GGTTGACAGCTCGGGTGC 61.050 66.667 3.45 0.00 34.04 5.01
2250 2337 2.032681 AAGGCCGAGGTTGACAGC 59.967 61.111 0.00 0.00 0.00 4.40
2252 2339 2.281484 GCAAGGCCGAGGTTGACA 60.281 61.111 6.64 0.00 0.00 3.58
2267 2354 1.070445 CTTGTCTTGCAAATTGGGGCA 59.930 47.619 0.00 0.00 36.53 5.36
2271 2358 3.383761 GACACCTTGTCTTGCAAATTGG 58.616 45.455 0.00 1.49 43.73 3.16
2290 2509 3.753070 GACCGGAGCCGACGATGAC 62.753 68.421 9.46 0.00 42.83 3.06
2440 2672 8.928733 CAGCAAGAAATTAAGCACATAAACAAT 58.071 29.630 0.00 0.00 0.00 2.71
2441 2673 7.925483 ACAGCAAGAAATTAAGCACATAAACAA 59.075 29.630 0.00 0.00 0.00 2.83
2446 2678 5.709631 TGGACAGCAAGAAATTAAGCACATA 59.290 36.000 0.00 0.00 0.00 2.29
2478 2710 3.801594 TGGTTCGAGCAAGCAAATTTTTC 59.198 39.130 0.53 0.00 39.60 2.29
2494 2730 5.871524 CAGGAATCTACATATCCATGGTTCG 59.128 44.000 12.58 1.12 36.39 3.95
2495 2731 6.773638 ACAGGAATCTACATATCCATGGTTC 58.226 40.000 12.58 4.54 36.39 3.62
2519 2757 9.912634 CAGCTTTCCAAAGTAAAAATAGAATGA 57.087 29.630 1.14 0.00 38.28 2.57
2526 2764 5.551305 AGGCAGCTTTCCAAAGTAAAAAT 57.449 34.783 4.72 0.00 38.28 1.82
2533 2772 3.319122 ACAAACTAGGCAGCTTTCCAAAG 59.681 43.478 4.72 4.21 39.03 2.77
2553 2792 6.755141 GCAGATGTAGTAATTAACGAGGAACA 59.245 38.462 0.00 0.00 0.00 3.18
2578 2817 4.451379 AATTTTCTTTTTGCGGCGAAAG 57.549 36.364 12.98 16.21 34.87 2.62
2579 2818 5.044558 AGTAATTTTCTTTTTGCGGCGAAA 58.955 33.333 12.98 11.29 0.00 3.46
2580 2819 4.612943 AGTAATTTTCTTTTTGCGGCGAA 58.387 34.783 12.98 0.00 0.00 4.70
2581 2820 4.231718 AGTAATTTTCTTTTTGCGGCGA 57.768 36.364 12.98 0.00 0.00 5.54
2582 2821 4.912766 TGTAGTAATTTTCTTTTTGCGGCG 59.087 37.500 0.51 0.51 0.00 6.46
2583 2822 6.806739 AGATGTAGTAATTTTCTTTTTGCGGC 59.193 34.615 0.00 0.00 0.00 6.53
2584 2823 7.201350 GCAGATGTAGTAATTTTCTTTTTGCGG 60.201 37.037 0.00 0.00 0.00 5.69
2585 2824 7.538678 AGCAGATGTAGTAATTTTCTTTTTGCG 59.461 33.333 0.00 0.00 0.00 4.85
2586 2825 8.748380 AGCAGATGTAGTAATTTTCTTTTTGC 57.252 30.769 0.00 0.00 0.00 3.68
2590 2829 8.665685 CCGTTAGCAGATGTAGTAATTTTCTTT 58.334 33.333 0.00 0.00 0.00 2.52
2591 2830 7.822822 ACCGTTAGCAGATGTAGTAATTTTCTT 59.177 33.333 0.00 0.00 0.00 2.52
2592 2831 7.328737 ACCGTTAGCAGATGTAGTAATTTTCT 58.671 34.615 0.00 0.00 0.00 2.52
2593 2832 7.491696 AGACCGTTAGCAGATGTAGTAATTTTC 59.508 37.037 0.00 0.00 0.00 2.29
2594 2833 7.277981 CAGACCGTTAGCAGATGTAGTAATTTT 59.722 37.037 0.00 0.00 0.00 1.82
2595 2834 6.757010 CAGACCGTTAGCAGATGTAGTAATTT 59.243 38.462 0.00 0.00 0.00 1.82
2596 2835 6.096423 TCAGACCGTTAGCAGATGTAGTAATT 59.904 38.462 0.00 0.00 0.00 1.40
2597 2836 5.593095 TCAGACCGTTAGCAGATGTAGTAAT 59.407 40.000 0.00 0.00 0.00 1.89
2598 2837 4.945543 TCAGACCGTTAGCAGATGTAGTAA 59.054 41.667 0.00 0.00 0.00 2.24
2599 2838 4.520179 TCAGACCGTTAGCAGATGTAGTA 58.480 43.478 0.00 0.00 0.00 1.82
2600 2839 3.353557 TCAGACCGTTAGCAGATGTAGT 58.646 45.455 0.00 0.00 0.00 2.73
2601 2840 3.793801 GCTCAGACCGTTAGCAGATGTAG 60.794 52.174 0.00 0.00 36.26 2.74
2602 2841 2.099263 GCTCAGACCGTTAGCAGATGTA 59.901 50.000 0.00 0.00 36.26 2.29
2603 2842 1.134965 GCTCAGACCGTTAGCAGATGT 60.135 52.381 0.00 0.00 36.26 3.06
2604 2843 1.565305 GCTCAGACCGTTAGCAGATG 58.435 55.000 0.00 0.00 36.26 2.90
2618 2857 1.150567 CTGGATTCCGCTTCGCTCAG 61.151 60.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.