Multiple sequence alignment - TraesCS2A01G076000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G076000 chr2A 100.000 4489 0 0 1 4489 33951051 33955539 0.000000e+00 8290
1 TraesCS2A01G076000 chr2A 95.440 2500 112 2 1 2499 33785269 33787767 0.000000e+00 3984
2 TraesCS2A01G076000 chr2A 95.278 1652 70 4 2493 4137 33790456 33792106 0.000000e+00 2612
3 TraesCS2A01G076000 chr2D 94.228 4175 205 15 1 4143 31895135 31899305 0.000000e+00 6342
4 TraesCS2A01G076000 chr2D 95.143 350 15 2 4142 4489 583994348 583993999 6.560000e-153 551
5 TraesCS2A01G076000 chr5D 86.701 3098 365 34 666 3742 227544151 227547222 0.000000e+00 3395
6 TraesCS2A01G076000 chr5D 95.143 350 15 2 4142 4489 52083799 52083450 6.560000e-153 551
7 TraesCS2A01G076000 chr5D 95.143 350 15 2 4142 4489 185531268 185530919 6.560000e-153 551
8 TraesCS2A01G076000 chr5A 87.108 2932 340 30 582 3497 305277995 305280904 0.000000e+00 3286
9 TraesCS2A01G076000 chr5A 81.961 255 32 9 3497 3742 305280968 305281217 2.120000e-48 204
10 TraesCS2A01G076000 chr5B 85.424 3204 382 61 584 3742 250951445 250954608 0.000000e+00 3251
11 TraesCS2A01G076000 chr2B 92.210 2131 119 24 1650 3743 52511921 52509801 0.000000e+00 2972
12 TraesCS2A01G076000 chr2B 91.837 2107 135 18 1650 3743 52223797 52225879 0.000000e+00 2904
13 TraesCS2A01G076000 chr2B 91.127 1375 120 2 232 1604 52222425 52223799 0.000000e+00 1862
14 TraesCS2A01G076000 chr2B 91.055 1375 102 12 232 1604 52513274 52511919 0.000000e+00 1838
15 TraesCS2A01G076000 chr6D 80.864 3125 506 55 550 3609 441714631 441711534 0.000000e+00 2374
16 TraesCS2A01G076000 chr6B 80.667 3119 492 74 567 3609 667248794 667245711 0.000000e+00 2316
17 TraesCS2A01G076000 chr6A 80.341 3108 506 70 550 3583 590896660 590893584 0.000000e+00 2257
18 TraesCS2A01G076000 chr6A 88.088 319 32 6 232 547 467376329 467376644 1.520000e-99 374
19 TraesCS2A01G076000 chr7D 95.143 350 15 2 4142 4489 159416169 159416518 6.560000e-153 551
20 TraesCS2A01G076000 chr4D 95.143 350 15 2 4142 4489 31529533 31529184 6.560000e-153 551
21 TraesCS2A01G076000 chr4D 94.857 350 16 2 4142 4489 321556483 321556134 3.050000e-151 545
22 TraesCS2A01G076000 chr4D 94.857 350 16 2 4142 4489 333146019 333146368 3.050000e-151 545
23 TraesCS2A01G076000 chr1D 94.857 350 16 2 4142 4489 249730081 249730430 3.050000e-151 545
24 TraesCS2A01G076000 chr1D 94.857 350 16 2 4142 4489 310068773 310069122 3.050000e-151 545
25 TraesCS2A01G076000 chr1D 88.050 318 36 2 232 547 21289949 21289632 4.240000e-100 375
26 TraesCS2A01G076000 chr3A 88.438 320 33 4 232 547 466817394 466817075 2.530000e-102 383
27 TraesCS2A01G076000 chr3D 88.050 318 36 2 232 547 36911367 36911684 4.240000e-100 375
28 TraesCS2A01G076000 chr3B 88.050 318 36 2 232 547 631007275 631007592 4.240000e-100 375
29 TraesCS2A01G076000 chr3B 77.733 247 35 7 1 228 717636152 717636397 2.820000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G076000 chr2A 33951051 33955539 4488 False 8290 8290 100.0000 1 4489 1 chr2A.!!$F1 4488
1 TraesCS2A01G076000 chr2A 33785269 33792106 6837 False 3298 3984 95.3590 1 4137 2 chr2A.!!$F2 4136
2 TraesCS2A01G076000 chr2D 31895135 31899305 4170 False 6342 6342 94.2280 1 4143 1 chr2D.!!$F1 4142
3 TraesCS2A01G076000 chr5D 227544151 227547222 3071 False 3395 3395 86.7010 666 3742 1 chr5D.!!$F1 3076
4 TraesCS2A01G076000 chr5A 305277995 305281217 3222 False 1745 3286 84.5345 582 3742 2 chr5A.!!$F1 3160
5 TraesCS2A01G076000 chr5B 250951445 250954608 3163 False 3251 3251 85.4240 584 3742 1 chr5B.!!$F1 3158
6 TraesCS2A01G076000 chr2B 52509801 52513274 3473 True 2405 2972 91.6325 232 3743 2 chr2B.!!$R1 3511
7 TraesCS2A01G076000 chr2B 52222425 52225879 3454 False 2383 2904 91.4820 232 3743 2 chr2B.!!$F1 3511
8 TraesCS2A01G076000 chr6D 441711534 441714631 3097 True 2374 2374 80.8640 550 3609 1 chr6D.!!$R1 3059
9 TraesCS2A01G076000 chr6B 667245711 667248794 3083 True 2316 2316 80.6670 567 3609 1 chr6B.!!$R1 3042
10 TraesCS2A01G076000 chr6A 590893584 590896660 3076 True 2257 2257 80.3410 550 3583 1 chr6A.!!$R1 3033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 1.064952 CAAAACAACCCCACTCGTCAC 59.935 52.381 0.00 0.0 0.00 3.67 F
213 233 1.423921 CACAACTAAGGAACCAGGGGT 59.576 52.381 0.00 0.0 37.65 4.95 F
1857 1914 0.543410 TAGAAGGGTCCAGACGCCAA 60.543 55.000 10.87 0.0 44.27 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 1889 3.118884 GCGTCTGGACCCTTCTATTGTTA 60.119 47.826 0.0 0.0 0.00 2.41 R
1879 1936 5.491070 TCACCTCATGTTCTTCATTGGTAG 58.509 41.667 0.0 0.0 38.13 3.18 R
3798 6700 0.833287 ATGAGTAGGTGCGAGGCAAT 59.167 50.000 0.0 0.0 41.47 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.774217 TCTCCTTGTGGCCCCACTT 60.774 57.895 17.57 0.00 46.30 3.16
51 52 1.301716 CCCCACTTGTCAGGACGTG 60.302 63.158 0.00 0.00 0.00 4.49
81 82 2.522193 GGACCCGGCCCAAAACAA 60.522 61.111 0.00 0.00 0.00 2.83
90 91 2.037871 CCCAAAACAACCCCACTCG 58.962 57.895 0.00 0.00 0.00 4.18
94 95 1.064952 CAAAACAACCCCACTCGTCAC 59.935 52.381 0.00 0.00 0.00 3.67
124 125 2.231235 GGTTAAGCCATTGACCCAACAG 59.769 50.000 0.00 0.00 38.77 3.16
153 173 2.103094 CCAGTTCAGACAAGAGTGTGGA 59.897 50.000 0.00 0.00 39.36 4.02
156 176 3.068873 AGTTCAGACAAGAGTGTGGAGAC 59.931 47.826 0.00 0.00 39.36 3.36
213 233 1.423921 CACAACTAAGGAACCAGGGGT 59.576 52.381 0.00 0.00 37.65 4.95
411 431 4.036262 GCTAAAGTGTTGTTGGTGATCACA 59.964 41.667 26.47 10.65 0.00 3.58
510 532 7.180766 ACCATCATATTGATTGACCCAAACTTT 59.819 33.333 0.00 0.00 34.28 2.66
578 600 7.149202 TCAACTAGGGCTAACATTATCCATT 57.851 36.000 0.00 0.00 0.00 3.16
1266 1310 4.758688 TGCATCGATGTGAATCTACAACT 58.241 39.130 25.47 0.00 33.69 3.16
1415 1461 7.075741 ACGATGTGTTATTTGAAGTAAACAGC 58.924 34.615 0.00 0.00 32.83 4.40
1857 1914 0.543410 TAGAAGGGTCCAGACGCCAA 60.543 55.000 10.87 0.00 44.27 4.52
1879 1936 9.937175 GCCAATAGAAACTATTGATAAAGTGAC 57.063 33.333 24.13 6.67 37.15 3.67
1988 2049 8.988064 TTCTTTGTAGTTGTTAAATGCACAAA 57.012 26.923 0.00 0.00 35.91 2.83
2020 2082 3.243805 CCATGCAAACCACATGTCAAAGA 60.244 43.478 0.00 0.00 42.74 2.52
2352 2436 4.901250 TGCAGGAGTGGAGTATTATGATGA 59.099 41.667 0.00 0.00 0.00 2.92
2547 5326 3.964031 AGGTTTCATGTTGCTTGGGTAAA 59.036 39.130 0.00 0.00 0.00 2.01
2682 5472 1.671979 CCTGATCATGATTGTGGCGT 58.328 50.000 10.14 0.00 0.00 5.68
3044 5843 5.010282 GGATAGTTTCACCTCACCACAAAT 58.990 41.667 0.00 0.00 0.00 2.32
3059 5858 8.499403 TCACCACAAATATTTGATCGATTGTA 57.501 30.769 30.18 7.43 40.55 2.41
3251 6054 0.396435 ATGTTCAAGGTCCGACAGCA 59.604 50.000 0.00 0.00 0.00 4.41
3443 6246 7.060383 AGGTTCTGTTGATGGATATAGTCAG 57.940 40.000 0.00 0.00 0.00 3.51
3638 6536 9.220767 GCTTAGTTTTGATTTCCTCGGATATAT 57.779 33.333 0.00 0.00 0.00 0.86
3772 6674 2.126812 GACTATCTAGCGCGCCCG 60.127 66.667 30.33 19.51 37.57 6.13
3835 6737 1.209019 CATGAAGTCCTAGCTGGCACT 59.791 52.381 0.00 0.00 35.26 4.40
3854 6756 2.945984 CGCGAAAAGGCTCTTGCA 59.054 55.556 0.00 0.00 41.91 4.08
3897 6799 0.175760 GCCTATGAGCCGTCTGTTCA 59.824 55.000 0.00 0.00 38.65 3.18
3965 6869 4.368543 GAACGAGCGAACCCGGGT 62.369 66.667 24.16 24.16 36.06 5.28
3998 6902 1.280710 TGGTCCATGATGGGTGTACAC 59.719 52.381 18.01 18.01 38.32 2.90
4015 6919 1.666553 ACGATTGTGGCGCTTTCGA 60.667 52.632 23.08 0.00 38.10 3.71
4023 6927 2.095252 GGCGCTTTCGAGTCCACTC 61.095 63.158 7.64 0.00 39.55 3.51
4024 6928 2.095252 GCGCTTTCGAGTCCACTCC 61.095 63.158 0.00 0.00 39.79 3.85
4052 6956 1.971505 ATCGTCGGATGCACCCACAT 61.972 55.000 0.00 0.00 34.64 3.21
4086 6990 3.130633 GCACTGTTCACACACATACTCA 58.869 45.455 0.00 0.00 0.00 3.41
4120 7024 1.471676 GGCCAGTTAGAGTGATGTCCG 60.472 57.143 0.00 0.00 0.00 4.79
4147 7051 2.125673 GGCTCGCACGCCTAGAAA 60.126 61.111 6.03 0.00 46.63 2.52
4148 7052 2.453638 GGCTCGCACGCCTAGAAAC 61.454 63.158 6.03 0.00 46.63 2.78
4149 7053 2.453638 GCTCGCACGCCTAGAAACC 61.454 63.158 0.00 0.00 0.00 3.27
4150 7054 1.080093 CTCGCACGCCTAGAAACCA 60.080 57.895 0.00 0.00 0.00 3.67
4151 7055 0.460284 CTCGCACGCCTAGAAACCAT 60.460 55.000 0.00 0.00 0.00 3.55
4152 7056 0.739462 TCGCACGCCTAGAAACCATG 60.739 55.000 0.00 0.00 0.00 3.66
4153 7057 1.019278 CGCACGCCTAGAAACCATGT 61.019 55.000 0.00 0.00 0.00 3.21
4154 7058 0.447801 GCACGCCTAGAAACCATGTG 59.552 55.000 0.00 0.00 0.00 3.21
4155 7059 1.086696 CACGCCTAGAAACCATGTGG 58.913 55.000 0.00 0.00 42.17 4.17
4156 7060 0.981183 ACGCCTAGAAACCATGTGGA 59.019 50.000 5.96 0.00 38.94 4.02
4157 7061 1.559682 ACGCCTAGAAACCATGTGGAT 59.440 47.619 5.96 0.00 38.94 3.41
4158 7062 2.026262 ACGCCTAGAAACCATGTGGATT 60.026 45.455 5.96 0.00 38.94 3.01
4159 7063 2.355756 CGCCTAGAAACCATGTGGATTG 59.644 50.000 5.96 0.00 38.94 2.67
4160 7064 3.356290 GCCTAGAAACCATGTGGATTGT 58.644 45.455 5.96 1.43 38.94 2.71
4161 7065 3.763897 GCCTAGAAACCATGTGGATTGTT 59.236 43.478 5.96 0.00 38.94 2.83
4162 7066 4.220602 GCCTAGAAACCATGTGGATTGTTT 59.779 41.667 5.96 0.00 38.94 2.83
4163 7067 5.713025 CCTAGAAACCATGTGGATTGTTTG 58.287 41.667 5.96 0.00 38.94 2.93
4164 7068 5.476599 CCTAGAAACCATGTGGATTGTTTGA 59.523 40.000 5.96 0.00 38.94 2.69
4165 7069 5.458041 AGAAACCATGTGGATTGTTTGAG 57.542 39.130 5.96 0.00 38.94 3.02
4166 7070 4.895297 AGAAACCATGTGGATTGTTTGAGT 59.105 37.500 5.96 0.00 38.94 3.41
4167 7071 5.363580 AGAAACCATGTGGATTGTTTGAGTT 59.636 36.000 5.96 0.00 38.94 3.01
4168 7072 4.853924 ACCATGTGGATTGTTTGAGTTC 57.146 40.909 5.96 0.00 38.94 3.01
4169 7073 4.214310 ACCATGTGGATTGTTTGAGTTCA 58.786 39.130 5.96 0.00 38.94 3.18
4170 7074 4.834496 ACCATGTGGATTGTTTGAGTTCAT 59.166 37.500 5.96 0.00 38.94 2.57
4171 7075 5.047802 ACCATGTGGATTGTTTGAGTTCATC 60.048 40.000 5.96 0.00 38.94 2.92
4172 7076 5.047872 CCATGTGGATTGTTTGAGTTCATCA 60.048 40.000 0.00 0.00 37.39 3.07
4173 7077 5.437289 TGTGGATTGTTTGAGTTCATCAC 57.563 39.130 0.00 0.00 37.77 3.06
4174 7078 4.278170 TGTGGATTGTTTGAGTTCATCACC 59.722 41.667 0.00 0.00 37.77 4.02
4175 7079 3.826157 TGGATTGTTTGAGTTCATCACCC 59.174 43.478 0.00 0.00 37.77 4.61
4176 7080 3.826157 GGATTGTTTGAGTTCATCACCCA 59.174 43.478 0.00 0.00 37.77 4.51
4177 7081 4.321230 GGATTGTTTGAGTTCATCACCCAC 60.321 45.833 0.00 0.00 37.77 4.61
4178 7082 2.217750 TGTTTGAGTTCATCACCCACG 58.782 47.619 0.00 0.00 37.77 4.94
4179 7083 1.535462 GTTTGAGTTCATCACCCACGG 59.465 52.381 0.00 0.00 37.77 4.94
4180 7084 0.762418 TTGAGTTCATCACCCACGGT 59.238 50.000 0.00 0.00 37.77 4.83
4189 7093 3.636820 ACCCACGGTGTTGTCTGA 58.363 55.556 7.45 0.00 32.98 3.27
4190 7094 1.445942 ACCCACGGTGTTGTCTGAG 59.554 57.895 7.45 0.00 32.98 3.35
4191 7095 1.335132 ACCCACGGTGTTGTCTGAGT 61.335 55.000 7.45 0.00 32.98 3.41
4192 7096 0.677288 CCCACGGTGTTGTCTGAGTA 59.323 55.000 7.45 0.00 0.00 2.59
4193 7097 1.069513 CCCACGGTGTTGTCTGAGTAA 59.930 52.381 7.45 0.00 0.00 2.24
4194 7098 2.132762 CCACGGTGTTGTCTGAGTAAC 58.867 52.381 7.45 0.00 0.00 2.50
4195 7099 2.132762 CACGGTGTTGTCTGAGTAACC 58.867 52.381 0.00 0.00 0.00 2.85
4196 7100 1.758280 ACGGTGTTGTCTGAGTAACCA 59.242 47.619 0.00 0.00 0.00 3.67
4197 7101 2.367567 ACGGTGTTGTCTGAGTAACCAT 59.632 45.455 0.00 0.00 0.00 3.55
4198 7102 3.181458 ACGGTGTTGTCTGAGTAACCATT 60.181 43.478 0.00 0.00 0.00 3.16
4199 7103 3.813166 CGGTGTTGTCTGAGTAACCATTT 59.187 43.478 0.00 0.00 0.00 2.32
4200 7104 4.319477 CGGTGTTGTCTGAGTAACCATTTG 60.319 45.833 0.00 0.00 0.00 2.32
4201 7105 4.537015 GTGTTGTCTGAGTAACCATTTGC 58.463 43.478 3.23 0.00 0.00 3.68
4202 7106 4.036262 GTGTTGTCTGAGTAACCATTTGCA 59.964 41.667 0.00 0.00 0.00 4.08
4203 7107 4.642437 TGTTGTCTGAGTAACCATTTGCAA 59.358 37.500 0.00 0.00 0.00 4.08
4204 7108 5.301551 TGTTGTCTGAGTAACCATTTGCAAT 59.698 36.000 0.00 0.00 0.00 3.56
4205 7109 6.488344 TGTTGTCTGAGTAACCATTTGCAATA 59.512 34.615 0.00 0.00 0.00 1.90
4206 7110 6.741992 TGTCTGAGTAACCATTTGCAATAG 57.258 37.500 0.00 0.00 0.00 1.73
4207 7111 6.472016 TGTCTGAGTAACCATTTGCAATAGA 58.528 36.000 0.00 0.00 0.00 1.98
4208 7112 6.939730 TGTCTGAGTAACCATTTGCAATAGAA 59.060 34.615 0.00 0.00 0.00 2.10
4209 7113 7.446931 TGTCTGAGTAACCATTTGCAATAGAAA 59.553 33.333 0.00 0.00 0.00 2.52
4210 7114 7.750903 GTCTGAGTAACCATTTGCAATAGAAAC 59.249 37.037 0.00 0.00 0.00 2.78
4211 7115 6.919721 TGAGTAACCATTTGCAATAGAAACC 58.080 36.000 0.00 0.00 0.00 3.27
4212 7116 6.071616 TGAGTAACCATTTGCAATAGAAACCC 60.072 38.462 0.00 0.00 0.00 4.11
4213 7117 4.551702 AACCATTTGCAATAGAAACCCC 57.448 40.909 0.00 0.00 0.00 4.95
4214 7118 3.515562 ACCATTTGCAATAGAAACCCCA 58.484 40.909 0.00 0.00 0.00 4.96
4215 7119 3.906846 ACCATTTGCAATAGAAACCCCAA 59.093 39.130 0.00 0.00 0.00 4.12
4216 7120 4.535692 ACCATTTGCAATAGAAACCCCAAT 59.464 37.500 0.00 0.00 0.00 3.16
4217 7121 5.723887 ACCATTTGCAATAGAAACCCCAATA 59.276 36.000 0.00 0.00 0.00 1.90
4218 7122 6.214412 ACCATTTGCAATAGAAACCCCAATAA 59.786 34.615 0.00 0.00 0.00 1.40
4219 7123 6.538381 CCATTTGCAATAGAAACCCCAATAAC 59.462 38.462 0.00 0.00 0.00 1.89
4220 7124 5.669164 TTGCAATAGAAACCCCAATAACC 57.331 39.130 0.00 0.00 0.00 2.85
4221 7125 4.678256 TGCAATAGAAACCCCAATAACCA 58.322 39.130 0.00 0.00 0.00 3.67
4222 7126 4.709397 TGCAATAGAAACCCCAATAACCAG 59.291 41.667 0.00 0.00 0.00 4.00
4223 7127 4.099419 GCAATAGAAACCCCAATAACCAGG 59.901 45.833 0.00 0.00 0.00 4.45
4231 7135 4.382386 CCCCAATAACCAGGGTAATAGG 57.618 50.000 0.00 0.00 43.89 2.57
4232 7136 3.499745 CCCCAATAACCAGGGTAATAGGC 60.500 52.174 0.00 0.00 43.89 3.93
4233 7137 3.499745 CCCAATAACCAGGGTAATAGGCC 60.500 52.174 0.00 0.00 40.34 5.19
4234 7138 3.499745 CCAATAACCAGGGTAATAGGCCC 60.500 52.174 0.00 0.00 46.43 5.80
4247 7151 8.465273 GGGTAATAGGCCCATTATTGATAATC 57.535 38.462 6.90 0.00 45.40 1.75
4248 7152 7.505923 GGGTAATAGGCCCATTATTGATAATCC 59.494 40.741 6.90 1.33 45.40 3.01
4249 7153 8.058847 GGTAATAGGCCCATTATTGATAATCCA 58.941 37.037 6.90 0.00 30.91 3.41
4250 7154 9.646522 GTAATAGGCCCATTATTGATAATCCAT 57.353 33.333 6.90 0.00 30.91 3.41
4251 7155 8.543293 AATAGGCCCATTATTGATAATCCATG 57.457 34.615 0.00 0.00 30.91 3.66
4252 7156 5.907421 AGGCCCATTATTGATAATCCATGT 58.093 37.500 0.00 0.00 30.91 3.21
4253 7157 7.043300 AGGCCCATTATTGATAATCCATGTA 57.957 36.000 0.00 0.00 30.91 2.29
4254 7158 6.891908 AGGCCCATTATTGATAATCCATGTAC 59.108 38.462 0.00 0.00 30.91 2.90
4255 7159 6.891908 GGCCCATTATTGATAATCCATGTACT 59.108 38.462 0.00 0.00 30.91 2.73
4256 7160 8.052748 GGCCCATTATTGATAATCCATGTACTA 58.947 37.037 0.00 0.00 30.91 1.82
4257 7161 9.461312 GCCCATTATTGATAATCCATGTACTAA 57.539 33.333 0.00 0.00 30.91 2.24
4289 7193 9.438228 TTGATATTTCGTATAAAACACACCAGA 57.562 29.630 0.00 0.00 0.00 3.86
4290 7194 9.607988 TGATATTTCGTATAAAACACACCAGAT 57.392 29.630 0.00 0.00 0.00 2.90
4296 7200 9.438228 TTCGTATAAAACACACCAGATATTTCA 57.562 29.630 0.00 0.00 0.00 2.69
4297 7201 9.607988 TCGTATAAAACACACCAGATATTTCAT 57.392 29.630 0.00 0.00 0.00 2.57
4302 7206 7.496529 AAACACACCAGATATTTCATATCCG 57.503 36.000 0.90 0.00 42.03 4.18
4303 7207 6.174720 ACACACCAGATATTTCATATCCGT 57.825 37.500 0.90 0.00 42.03 4.69
4304 7208 7.297936 ACACACCAGATATTTCATATCCGTA 57.702 36.000 0.90 0.00 42.03 4.02
4305 7209 7.907389 ACACACCAGATATTTCATATCCGTAT 58.093 34.615 0.90 0.00 42.03 3.06
4306 7210 9.031537 ACACACCAGATATTTCATATCCGTATA 57.968 33.333 0.90 0.00 42.03 1.47
4307 7211 9.869757 CACACCAGATATTTCATATCCGTATAA 57.130 33.333 0.90 0.00 42.03 0.98
4316 7220 7.867305 TTTCATATCCGTATAAAAGCAACCA 57.133 32.000 0.00 0.00 0.00 3.67
4317 7221 8.458573 TTTCATATCCGTATAAAAGCAACCAT 57.541 30.769 0.00 0.00 0.00 3.55
4318 7222 7.433708 TCATATCCGTATAAAAGCAACCATG 57.566 36.000 0.00 0.00 0.00 3.66
4319 7223 7.220740 TCATATCCGTATAAAAGCAACCATGA 58.779 34.615 0.00 0.00 0.00 3.07
4320 7224 7.882791 TCATATCCGTATAAAAGCAACCATGAT 59.117 33.333 0.00 0.00 0.00 2.45
4321 7225 6.959639 ATCCGTATAAAAGCAACCATGATT 57.040 33.333 0.00 0.00 36.56 2.57
4322 7226 6.767524 TCCGTATAAAAGCAACCATGATTT 57.232 33.333 0.00 0.00 46.50 2.17
4323 7227 6.791303 TCCGTATAAAAGCAACCATGATTTC 58.209 36.000 0.00 0.00 43.94 2.17
4324 7228 6.375736 TCCGTATAAAAGCAACCATGATTTCA 59.624 34.615 0.00 0.00 43.94 2.69
4325 7229 7.068103 TCCGTATAAAAGCAACCATGATTTCAT 59.932 33.333 0.00 0.00 43.94 2.57
4326 7230 8.349245 CCGTATAAAAGCAACCATGATTTCATA 58.651 33.333 0.00 0.00 43.94 2.15
4327 7231 9.729023 CGTATAAAAGCAACCATGATTTCATAA 57.271 29.630 0.00 0.00 43.94 1.90
4330 7234 7.760131 AAAAGCAACCATGATTTCATAATCG 57.240 32.000 0.00 0.00 43.94 3.34
4331 7235 6.698008 AAGCAACCATGATTTCATAATCGA 57.302 33.333 0.00 0.00 42.55 3.59
4332 7236 6.698008 AGCAACCATGATTTCATAATCGAA 57.302 33.333 0.00 0.00 42.55 3.71
4333 7237 7.281040 AGCAACCATGATTTCATAATCGAAT 57.719 32.000 0.00 0.00 42.55 3.34
4334 7238 7.719483 AGCAACCATGATTTCATAATCGAATT 58.281 30.769 0.00 0.00 42.55 2.17
4335 7239 8.849168 AGCAACCATGATTTCATAATCGAATTA 58.151 29.630 0.00 0.00 42.55 1.40
4336 7240 8.905702 GCAACCATGATTTCATAATCGAATTAC 58.094 33.333 0.00 0.00 42.55 1.89
4337 7241 9.949174 CAACCATGATTTCATAATCGAATTACA 57.051 29.630 0.00 0.00 42.55 2.41
4350 7254 7.573916 AATCGAATTACATCAGATAGCTTCG 57.426 36.000 0.00 8.96 36.50 3.79
4351 7255 5.461526 TCGAATTACATCAGATAGCTTCGG 58.538 41.667 0.00 0.00 36.02 4.30
4352 7256 4.090642 CGAATTACATCAGATAGCTTCGGC 59.909 45.833 0.00 0.00 42.17 5.54
4353 7257 4.607293 ATTACATCAGATAGCTTCGGCA 57.393 40.909 0.00 0.00 44.74 5.69
4354 7258 2.231215 ACATCAGATAGCTTCGGCAC 57.769 50.000 0.00 0.00 44.74 5.01
4355 7259 1.759445 ACATCAGATAGCTTCGGCACT 59.241 47.619 0.00 0.00 44.74 4.40
4356 7260 2.223923 ACATCAGATAGCTTCGGCACTC 60.224 50.000 0.00 0.00 44.74 3.51
4357 7261 1.474330 TCAGATAGCTTCGGCACTCA 58.526 50.000 0.00 0.00 44.74 3.41
4358 7262 1.406898 TCAGATAGCTTCGGCACTCAG 59.593 52.381 0.00 0.00 44.74 3.35
4359 7263 1.135915 CAGATAGCTTCGGCACTCAGT 59.864 52.381 0.00 0.00 44.74 3.41
4360 7264 1.827969 AGATAGCTTCGGCACTCAGTT 59.172 47.619 0.00 0.00 44.74 3.16
4361 7265 3.024547 AGATAGCTTCGGCACTCAGTTA 58.975 45.455 0.00 0.00 44.74 2.24
4362 7266 2.649331 TAGCTTCGGCACTCAGTTAC 57.351 50.000 0.00 0.00 44.74 2.50
4363 7267 0.388649 AGCTTCGGCACTCAGTTACG 60.389 55.000 0.00 0.00 44.74 3.18
4364 7268 1.956620 GCTTCGGCACTCAGTTACGC 61.957 60.000 0.00 0.00 41.33 4.42
4365 7269 1.352156 CTTCGGCACTCAGTTACGCC 61.352 60.000 0.00 0.00 41.30 5.68
4366 7270 2.048597 CGGCACTCAGTTACGCCA 60.049 61.111 5.54 0.00 45.14 5.69
4367 7271 1.447838 CGGCACTCAGTTACGCCAT 60.448 57.895 5.54 0.00 45.14 4.40
4368 7272 1.019278 CGGCACTCAGTTACGCCATT 61.019 55.000 5.54 0.00 45.14 3.16
4369 7273 1.737696 CGGCACTCAGTTACGCCATTA 60.738 52.381 5.54 0.00 45.14 1.90
4370 7274 2.561569 GGCACTCAGTTACGCCATTAT 58.438 47.619 0.00 0.00 44.25 1.28
4371 7275 3.724374 GGCACTCAGTTACGCCATTATA 58.276 45.455 0.00 0.00 44.25 0.98
4372 7276 3.493503 GGCACTCAGTTACGCCATTATAC 59.506 47.826 0.00 0.00 44.25 1.47
4373 7277 4.116961 GCACTCAGTTACGCCATTATACA 58.883 43.478 0.00 0.00 0.00 2.29
4374 7278 4.569162 GCACTCAGTTACGCCATTATACAA 59.431 41.667 0.00 0.00 0.00 2.41
4375 7279 5.501897 GCACTCAGTTACGCCATTATACAAC 60.502 44.000 0.00 0.00 0.00 3.32
4376 7280 5.579119 CACTCAGTTACGCCATTATACAACA 59.421 40.000 0.00 0.00 0.00 3.33
4377 7281 5.810587 ACTCAGTTACGCCATTATACAACAG 59.189 40.000 0.00 0.00 0.00 3.16
4378 7282 4.569162 TCAGTTACGCCATTATACAACAGC 59.431 41.667 0.00 0.00 0.00 4.40
4379 7283 4.331443 CAGTTACGCCATTATACAACAGCA 59.669 41.667 0.00 0.00 0.00 4.41
4380 7284 4.331717 AGTTACGCCATTATACAACAGCAC 59.668 41.667 0.00 0.00 0.00 4.40
4381 7285 2.014128 ACGCCATTATACAACAGCACC 58.986 47.619 0.00 0.00 0.00 5.01
4382 7286 2.013400 CGCCATTATACAACAGCACCA 58.987 47.619 0.00 0.00 0.00 4.17
4383 7287 2.421775 CGCCATTATACAACAGCACCAA 59.578 45.455 0.00 0.00 0.00 3.67
4384 7288 3.487376 CGCCATTATACAACAGCACCAAG 60.487 47.826 0.00 0.00 0.00 3.61
4385 7289 3.443681 GCCATTATACAACAGCACCAAGT 59.556 43.478 0.00 0.00 0.00 3.16
4386 7290 4.082245 GCCATTATACAACAGCACCAAGTT 60.082 41.667 0.00 0.00 0.00 2.66
4387 7291 5.566627 GCCATTATACAACAGCACCAAGTTT 60.567 40.000 0.00 0.00 0.00 2.66
4388 7292 6.092748 CCATTATACAACAGCACCAAGTTTC 58.907 40.000 0.00 0.00 0.00 2.78
4389 7293 6.294453 CCATTATACAACAGCACCAAGTTTCA 60.294 38.462 0.00 0.00 0.00 2.69
4390 7294 2.939460 ACAACAGCACCAAGTTTCAC 57.061 45.000 0.00 0.00 0.00 3.18
4391 7295 2.166829 ACAACAGCACCAAGTTTCACA 58.833 42.857 0.00 0.00 0.00 3.58
4392 7296 2.760092 ACAACAGCACCAAGTTTCACAT 59.240 40.909 0.00 0.00 0.00 3.21
4393 7297 3.117794 CAACAGCACCAAGTTTCACATG 58.882 45.455 0.00 0.00 0.00 3.21
4394 7298 1.067516 ACAGCACCAAGTTTCACATGC 59.932 47.619 0.00 0.00 0.00 4.06
4395 7299 1.067364 CAGCACCAAGTTTCACATGCA 59.933 47.619 0.00 0.00 35.51 3.96
4396 7300 1.338973 AGCACCAAGTTTCACATGCAG 59.661 47.619 0.00 0.00 35.51 4.41
4397 7301 1.774639 CACCAAGTTTCACATGCAGC 58.225 50.000 0.00 0.00 0.00 5.25
4398 7302 1.067364 CACCAAGTTTCACATGCAGCA 59.933 47.619 0.00 0.00 0.00 4.41
4399 7303 1.965643 ACCAAGTTTCACATGCAGCAT 59.034 42.857 0.52 0.52 0.00 3.79
4400 7304 2.029649 ACCAAGTTTCACATGCAGCATC 60.030 45.455 4.38 0.00 0.00 3.91
4401 7305 2.029739 CCAAGTTTCACATGCAGCATCA 60.030 45.455 4.38 0.00 0.00 3.07
4402 7306 3.553302 CCAAGTTTCACATGCAGCATCAA 60.553 43.478 4.38 0.00 0.00 2.57
4403 7307 4.052608 CAAGTTTCACATGCAGCATCAAA 58.947 39.130 4.38 2.32 0.00 2.69
4404 7308 4.325028 AGTTTCACATGCAGCATCAAAA 57.675 36.364 4.38 3.71 0.00 2.44
4405 7309 4.053295 AGTTTCACATGCAGCATCAAAAC 58.947 39.130 19.86 19.86 0.00 2.43
4406 7310 2.728690 TCACATGCAGCATCAAAACC 57.271 45.000 4.38 0.00 0.00 3.27
4407 7311 2.241160 TCACATGCAGCATCAAAACCT 58.759 42.857 4.38 0.00 0.00 3.50
4408 7312 2.629137 TCACATGCAGCATCAAAACCTT 59.371 40.909 4.38 0.00 0.00 3.50
4409 7313 3.069872 TCACATGCAGCATCAAAACCTTT 59.930 39.130 4.38 0.00 0.00 3.11
4410 7314 3.185594 CACATGCAGCATCAAAACCTTTG 59.814 43.478 4.38 0.00 0.00 2.77
4411 7315 2.529780 TGCAGCATCAAAACCTTTGG 57.470 45.000 0.00 0.00 0.00 3.28
4412 7316 2.037901 TGCAGCATCAAAACCTTTGGA 58.962 42.857 0.00 0.00 0.00 3.53
4413 7317 2.433604 TGCAGCATCAAAACCTTTGGAA 59.566 40.909 0.00 0.00 0.00 3.53
4414 7318 3.118482 TGCAGCATCAAAACCTTTGGAAA 60.118 39.130 0.00 0.00 0.00 3.13
4415 7319 3.495753 GCAGCATCAAAACCTTTGGAAAG 59.504 43.478 0.00 0.00 35.79 2.62
4416 7320 4.696455 CAGCATCAAAACCTTTGGAAAGT 58.304 39.130 0.00 0.00 34.20 2.66
4417 7321 5.738783 GCAGCATCAAAACCTTTGGAAAGTA 60.739 40.000 0.00 0.00 34.20 2.24
4418 7322 5.922544 CAGCATCAAAACCTTTGGAAAGTAG 59.077 40.000 0.00 0.00 34.20 2.57
4419 7323 4.686091 GCATCAAAACCTTTGGAAAGTAGC 59.314 41.667 0.00 0.00 34.20 3.58
4420 7324 5.738783 GCATCAAAACCTTTGGAAAGTAGCA 60.739 40.000 0.00 0.00 34.20 3.49
4421 7325 6.458210 CATCAAAACCTTTGGAAAGTAGCAT 58.542 36.000 0.00 0.00 34.20 3.79
4422 7326 6.084326 TCAAAACCTTTGGAAAGTAGCATC 57.916 37.500 0.00 0.00 34.20 3.91
4423 7327 5.596361 TCAAAACCTTTGGAAAGTAGCATCA 59.404 36.000 0.00 0.00 34.20 3.07
4424 7328 6.267471 TCAAAACCTTTGGAAAGTAGCATCAT 59.733 34.615 0.00 0.00 34.20 2.45
4425 7329 7.450014 TCAAAACCTTTGGAAAGTAGCATCATA 59.550 33.333 0.00 0.00 34.20 2.15
4426 7330 6.759497 AACCTTTGGAAAGTAGCATCATAC 57.241 37.500 0.00 0.00 34.20 2.39
4427 7331 5.815581 ACCTTTGGAAAGTAGCATCATACA 58.184 37.500 0.00 0.00 34.20 2.29
4428 7332 5.648092 ACCTTTGGAAAGTAGCATCATACAC 59.352 40.000 0.00 0.00 34.20 2.90
4429 7333 5.220662 CCTTTGGAAAGTAGCATCATACACG 60.221 44.000 0.00 0.00 34.20 4.49
4430 7334 3.792401 TGGAAAGTAGCATCATACACGG 58.208 45.455 0.00 0.00 0.00 4.94
4431 7335 3.196901 TGGAAAGTAGCATCATACACGGT 59.803 43.478 0.00 0.00 0.00 4.83
4432 7336 4.403113 TGGAAAGTAGCATCATACACGGTA 59.597 41.667 0.00 0.00 0.00 4.02
4433 7337 5.105269 TGGAAAGTAGCATCATACACGGTAA 60.105 40.000 0.00 0.00 0.00 2.85
4434 7338 5.813672 GGAAAGTAGCATCATACACGGTAAA 59.186 40.000 0.00 0.00 0.00 2.01
4435 7339 6.482308 GGAAAGTAGCATCATACACGGTAAAT 59.518 38.462 0.00 0.00 0.00 1.40
4436 7340 7.654520 GGAAAGTAGCATCATACACGGTAAATA 59.345 37.037 0.00 0.00 0.00 1.40
4437 7341 8.589335 AAAGTAGCATCATACACGGTAAATAG 57.411 34.615 0.00 0.00 0.00 1.73
4438 7342 7.520451 AGTAGCATCATACACGGTAAATAGA 57.480 36.000 0.00 0.00 0.00 1.98
4439 7343 7.368833 AGTAGCATCATACACGGTAAATAGAC 58.631 38.462 0.00 0.00 0.00 2.59
4440 7344 6.156748 AGCATCATACACGGTAAATAGACA 57.843 37.500 0.00 0.00 0.00 3.41
4441 7345 6.216569 AGCATCATACACGGTAAATAGACAG 58.783 40.000 0.00 0.00 0.00 3.51
4442 7346 6.040504 AGCATCATACACGGTAAATAGACAGA 59.959 38.462 0.00 0.00 0.00 3.41
4443 7347 6.868864 GCATCATACACGGTAAATAGACAGAT 59.131 38.462 0.00 0.00 0.00 2.90
4444 7348 7.148738 GCATCATACACGGTAAATAGACAGATG 60.149 40.741 0.00 0.00 0.00 2.90
4445 7349 7.576861 TCATACACGGTAAATAGACAGATGA 57.423 36.000 0.00 0.00 0.00 2.92
4446 7350 8.002984 TCATACACGGTAAATAGACAGATGAA 57.997 34.615 0.00 0.00 0.00 2.57
4447 7351 8.638873 TCATACACGGTAAATAGACAGATGAAT 58.361 33.333 0.00 0.00 0.00 2.57
4448 7352 8.916654 CATACACGGTAAATAGACAGATGAATC 58.083 37.037 0.00 0.00 0.00 2.52
4449 7353 7.113658 ACACGGTAAATAGACAGATGAATCT 57.886 36.000 0.00 0.00 37.72 2.40
4450 7354 7.203910 ACACGGTAAATAGACAGATGAATCTC 58.796 38.462 0.00 0.00 34.22 2.75
4451 7355 7.147897 ACACGGTAAATAGACAGATGAATCTCA 60.148 37.037 0.00 0.00 34.22 3.27
4452 7356 7.869937 CACGGTAAATAGACAGATGAATCTCAT 59.130 37.037 0.00 0.00 40.34 2.90
4464 7368 3.614092 TGAATCTCATCTGGGAAACTGC 58.386 45.455 0.00 0.00 0.00 4.40
4465 7369 3.009363 TGAATCTCATCTGGGAAACTGCA 59.991 43.478 0.00 0.00 0.00 4.41
4466 7370 2.775911 TCTCATCTGGGAAACTGCAG 57.224 50.000 13.48 13.48 0.00 4.41
4467 7371 2.259917 TCTCATCTGGGAAACTGCAGA 58.740 47.619 23.35 0.00 33.92 4.26
4468 7372 2.639347 TCTCATCTGGGAAACTGCAGAA 59.361 45.455 23.35 0.00 33.28 3.02
4469 7373 3.008330 CTCATCTGGGAAACTGCAGAAG 58.992 50.000 23.35 7.73 33.28 2.85
4470 7374 1.471684 CATCTGGGAAACTGCAGAAGC 59.528 52.381 23.35 8.31 42.57 3.86
4471 7375 0.603707 TCTGGGAAACTGCAGAAGCG 60.604 55.000 23.35 0.00 46.23 4.68
4488 7392 2.125461 GCGGAAGGCAAATATTGAGC 57.875 50.000 4.92 4.92 42.87 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 0.470456 TAACTGGTGACGAGTGGGGT 60.470 55.000 0.00 0.00 0.00 4.95
106 107 1.202989 TGCTGTTGGGTCAATGGCTTA 60.203 47.619 0.00 0.00 0.00 3.09
124 125 1.295792 TGTCTGAACTGGACGTTTGC 58.704 50.000 0.00 0.00 35.56 3.68
153 173 5.008118 GCTCTAAAGTTTTGCTCACTTGTCT 59.992 40.000 0.00 0.00 34.59 3.41
156 176 4.214437 CGCTCTAAAGTTTTGCTCACTTG 58.786 43.478 0.00 0.00 34.59 3.16
292 312 6.427242 CACTGAATCACATATTCCTGGATCAG 59.573 42.308 13.74 13.74 0.00 2.90
369 389 1.684450 GCTAGTCCTAGAGGCAAGACC 59.316 57.143 5.52 0.00 35.21 3.85
411 431 9.640963 CTTAACGATATCTAAGATCCGGAAAAT 57.359 33.333 9.01 0.00 0.00 1.82
486 507 9.090692 GAAAAGTTTGGGTCAATCAATATGATG 57.909 33.333 0.00 0.00 37.15 3.07
536 558 6.017400 AGTTGATTGCTGTTTGATTACAGG 57.983 37.500 5.97 0.00 44.50 4.00
578 600 6.872585 AAATCTTCTCAATTAATGCCCCAA 57.127 33.333 0.00 0.00 0.00 4.12
716 741 9.387397 TCATATGGATAATGTTGACCCTAGTTA 57.613 33.333 2.13 0.00 0.00 2.24
870 899 6.453926 TGCATTGCTAGAATAAAAGATGCA 57.546 33.333 10.49 1.95 44.23 3.96
992 1034 5.726980 TGGATTTTCTTTCATGGTGGAAG 57.273 39.130 0.00 0.00 0.00 3.46
1266 1310 3.654273 AGTAGTGGATGGCTAAAGGCTA 58.346 45.455 5.07 0.00 41.69 3.93
1395 1441 4.615541 GCCGCTGTTTACTTCAAATAACAC 59.384 41.667 0.00 0.00 0.00 3.32
1576 1625 3.882888 AGTTTGCCTTTCTTCGTGATCAA 59.117 39.130 0.00 0.00 0.00 2.57
1584 1633 4.810491 TGAATTTGCAGTTTGCCTTTCTTC 59.190 37.500 0.00 0.00 44.23 2.87
1823 1880 6.147328 GGACCCTTCTATTGTTACGCAATATC 59.853 42.308 0.89 0.00 45.73 1.63
1832 1889 3.118884 GCGTCTGGACCCTTCTATTGTTA 60.119 47.826 0.00 0.00 0.00 2.41
1879 1936 5.491070 TCACCTCATGTTCTTCATTGGTAG 58.509 41.667 0.00 0.00 38.13 3.18
1914 1973 9.450807 CCATTATAACCGAATCACTCAAAAATC 57.549 33.333 0.00 0.00 0.00 2.17
2213 2290 5.506730 TTGGTGGACATCACTTAATGGTA 57.493 39.130 0.00 0.00 45.38 3.25
2338 2422 9.757227 GTTCCATATAGCTCATCATAATACTCC 57.243 37.037 0.00 0.00 0.00 3.85
2352 2436 1.004918 GCCCGCGTTCCATATAGCT 60.005 57.895 4.92 0.00 0.00 3.32
2554 5333 9.958180 TTGAAGAACATGTATCCAGAGAAATAA 57.042 29.630 0.00 0.00 0.00 1.40
2682 5472 3.625764 ACTTGAGCTAACTTGCACGAAAA 59.374 39.130 0.00 0.00 34.99 2.29
3059 5858 9.715121 AATGCTTCAACATAGTTGAAATGAATT 57.285 25.926 21.36 15.32 37.89 2.17
3251 6054 4.384978 CCCATTTGTGGAGAGTCTGATGAT 60.385 45.833 0.00 0.00 0.00 2.45
3419 6222 6.613271 ACTGACTATATCCATCAACAGAACCT 59.387 38.462 0.00 0.00 0.00 3.50
3443 6246 5.646360 ACCATAGTAAGTATGCACACCAAAC 59.354 40.000 0.00 0.00 37.76 2.93
3750 6652 2.030551 CGCGCTAGATAGTCCACCA 58.969 57.895 5.56 0.00 0.00 4.17
3772 6674 2.362889 CCCAATGACAGTGGCCCC 60.363 66.667 16.55 0.00 34.56 5.80
3798 6700 0.833287 ATGAGTAGGTGCGAGGCAAT 59.167 50.000 0.00 0.00 41.47 3.56
3835 6737 2.945984 CAAGAGCCTTTTCGCGCA 59.054 55.556 8.75 0.00 0.00 6.09
3854 6756 1.876156 CTTCAGCCGAAAGAAGCACTT 59.124 47.619 0.00 0.00 40.98 3.16
3998 6902 1.059369 CTCGAAAGCGCCACAATCG 59.941 57.895 2.29 7.70 37.46 3.34
4015 6919 1.561542 GATGTCCCATTGGAGTGGACT 59.438 52.381 3.62 0.00 46.97 3.85
4023 6927 0.106708 ATCCGACGATGTCCCATTGG 59.893 55.000 0.00 0.00 0.00 3.16
4024 6928 1.220529 CATCCGACGATGTCCCATTG 58.779 55.000 0.00 0.00 40.97 2.82
4042 6946 2.282391 GCCTCACATGTGGGTGCA 60.282 61.111 25.34 8.71 38.66 4.57
4052 6956 3.259314 AGTGCATGGGGCCTCACA 61.259 61.111 7.99 0.00 43.89 3.58
4104 7008 0.179134 GCGCGGACATCACTCTAACT 60.179 55.000 8.83 0.00 0.00 2.24
4137 7041 0.981183 TCCACATGGTTTCTAGGCGT 59.019 50.000 0.00 0.00 36.34 5.68
4143 7047 4.895297 ACTCAAACAATCCACATGGTTTCT 59.105 37.500 0.00 0.00 36.34 2.52
4144 7048 5.200368 ACTCAAACAATCCACATGGTTTC 57.800 39.130 0.00 0.00 36.34 2.78
4145 7049 5.128499 TGAACTCAAACAATCCACATGGTTT 59.872 36.000 0.00 0.00 36.34 3.27
4146 7050 4.648762 TGAACTCAAACAATCCACATGGTT 59.351 37.500 0.00 0.00 36.34 3.67
4147 7051 4.214310 TGAACTCAAACAATCCACATGGT 58.786 39.130 0.00 0.00 36.34 3.55
4148 7052 4.852134 TGAACTCAAACAATCCACATGG 57.148 40.909 0.00 0.00 0.00 3.66
4149 7053 5.860182 GTGATGAACTCAAACAATCCACATG 59.140 40.000 0.00 0.00 35.07 3.21
4150 7054 5.047802 GGTGATGAACTCAAACAATCCACAT 60.048 40.000 0.00 0.00 35.07 3.21
4151 7055 4.278170 GGTGATGAACTCAAACAATCCACA 59.722 41.667 0.00 0.00 35.07 4.17
4152 7056 4.321230 GGGTGATGAACTCAAACAATCCAC 60.321 45.833 0.00 0.00 35.07 4.02
4153 7057 3.826157 GGGTGATGAACTCAAACAATCCA 59.174 43.478 0.00 0.00 35.07 3.41
4154 7058 3.826157 TGGGTGATGAACTCAAACAATCC 59.174 43.478 0.00 0.00 35.87 3.01
4155 7059 4.613622 CGTGGGTGATGAACTCAAACAATC 60.614 45.833 0.00 0.00 42.35 2.67
4156 7060 3.253188 CGTGGGTGATGAACTCAAACAAT 59.747 43.478 0.00 0.00 42.35 2.71
4157 7061 2.616376 CGTGGGTGATGAACTCAAACAA 59.384 45.455 0.00 0.00 42.35 2.83
4158 7062 2.217750 CGTGGGTGATGAACTCAAACA 58.782 47.619 0.00 0.00 42.35 2.83
4159 7063 1.535462 CCGTGGGTGATGAACTCAAAC 59.465 52.381 0.00 0.00 42.35 2.93
4160 7064 1.142060 ACCGTGGGTGATGAACTCAAA 59.858 47.619 0.00 0.00 42.35 2.69
4161 7065 0.762418 ACCGTGGGTGATGAACTCAA 59.238 50.000 0.00 0.00 42.35 3.02
4162 7066 2.447630 ACCGTGGGTGATGAACTCA 58.552 52.632 0.00 0.00 36.72 3.41
4172 7076 1.335132 ACTCAGACAACACCGTGGGT 61.335 55.000 3.03 0.45 35.62 4.51
4173 7077 0.677288 TACTCAGACAACACCGTGGG 59.323 55.000 3.03 0.00 0.00 4.61
4174 7078 2.132762 GTTACTCAGACAACACCGTGG 58.867 52.381 3.03 0.00 0.00 4.94
4175 7079 2.132762 GGTTACTCAGACAACACCGTG 58.867 52.381 0.00 0.00 0.00 4.94
4176 7080 1.758280 TGGTTACTCAGACAACACCGT 59.242 47.619 0.00 0.00 0.00 4.83
4177 7081 2.519377 TGGTTACTCAGACAACACCG 57.481 50.000 0.00 0.00 0.00 4.94
4178 7082 4.556699 GCAAATGGTTACTCAGACAACACC 60.557 45.833 0.00 0.00 0.00 4.16
4179 7083 4.036262 TGCAAATGGTTACTCAGACAACAC 59.964 41.667 0.00 0.00 0.00 3.32
4180 7084 4.203226 TGCAAATGGTTACTCAGACAACA 58.797 39.130 0.00 0.00 0.00 3.33
4181 7085 4.829064 TGCAAATGGTTACTCAGACAAC 57.171 40.909 0.00 0.00 0.00 3.32
4182 7086 6.939730 TCTATTGCAAATGGTTACTCAGACAA 59.060 34.615 1.71 0.00 0.00 3.18
4183 7087 6.472016 TCTATTGCAAATGGTTACTCAGACA 58.528 36.000 1.71 0.00 0.00 3.41
4184 7088 6.985188 TCTATTGCAAATGGTTACTCAGAC 57.015 37.500 1.71 0.00 0.00 3.51
4185 7089 7.094377 GGTTTCTATTGCAAATGGTTACTCAGA 60.094 37.037 1.71 0.00 0.00 3.27
4186 7090 7.029563 GGTTTCTATTGCAAATGGTTACTCAG 58.970 38.462 1.71 0.00 0.00 3.35
4187 7091 6.071616 GGGTTTCTATTGCAAATGGTTACTCA 60.072 38.462 1.71 0.00 0.00 3.41
4188 7092 6.330278 GGGTTTCTATTGCAAATGGTTACTC 58.670 40.000 1.71 0.00 0.00 2.59
4189 7093 5.186992 GGGGTTTCTATTGCAAATGGTTACT 59.813 40.000 1.71 0.00 0.00 2.24
4190 7094 5.046950 TGGGGTTTCTATTGCAAATGGTTAC 60.047 40.000 1.71 0.00 0.00 2.50
4191 7095 5.087323 TGGGGTTTCTATTGCAAATGGTTA 58.913 37.500 1.71 0.00 0.00 2.85
4192 7096 3.906846 TGGGGTTTCTATTGCAAATGGTT 59.093 39.130 1.71 0.00 0.00 3.67
4193 7097 3.515562 TGGGGTTTCTATTGCAAATGGT 58.484 40.909 1.71 0.00 0.00 3.55
4194 7098 4.550076 TTGGGGTTTCTATTGCAAATGG 57.450 40.909 1.71 0.00 0.00 3.16
4195 7099 6.538381 GGTTATTGGGGTTTCTATTGCAAATG 59.462 38.462 1.71 0.00 0.00 2.32
4196 7100 6.214412 TGGTTATTGGGGTTTCTATTGCAAAT 59.786 34.615 1.71 0.00 0.00 2.32
4197 7101 5.544176 TGGTTATTGGGGTTTCTATTGCAAA 59.456 36.000 1.71 0.00 0.00 3.68
4198 7102 5.087323 TGGTTATTGGGGTTTCTATTGCAA 58.913 37.500 0.00 0.00 0.00 4.08
4199 7103 4.678256 TGGTTATTGGGGTTTCTATTGCA 58.322 39.130 0.00 0.00 0.00 4.08
4200 7104 4.099419 CCTGGTTATTGGGGTTTCTATTGC 59.901 45.833 0.00 0.00 0.00 3.56
4201 7105 4.649218 CCCTGGTTATTGGGGTTTCTATTG 59.351 45.833 0.00 0.00 39.76 1.90
4202 7106 4.878968 CCCTGGTTATTGGGGTTTCTATT 58.121 43.478 0.00 0.00 39.76 1.73
4203 7107 4.536295 CCCTGGTTATTGGGGTTTCTAT 57.464 45.455 0.00 0.00 39.76 1.98
4205 7109 2.919772 CCCTGGTTATTGGGGTTTCT 57.080 50.000 0.00 0.00 39.76 2.52
4212 7116 3.499745 GGGCCTATTACCCTGGTTATTGG 60.500 52.174 0.84 10.26 44.68 3.16
4213 7117 3.763057 GGGCCTATTACCCTGGTTATTG 58.237 50.000 0.84 0.00 44.68 1.90
4223 7127 8.058847 TGGATTATCAATAATGGGCCTATTACC 58.941 37.037 22.47 16.27 33.37 2.85
4224 7128 9.646522 ATGGATTATCAATAATGGGCCTATTAC 57.353 33.333 22.47 8.23 33.37 1.89
4225 7129 9.645128 CATGGATTATCAATAATGGGCCTATTA 57.355 33.333 22.29 22.29 33.37 0.98
4226 7130 8.124430 ACATGGATTATCAATAATGGGCCTATT 58.876 33.333 19.21 19.21 33.37 1.73
4227 7131 7.655403 ACATGGATTATCAATAATGGGCCTAT 58.345 34.615 4.53 0.00 33.37 2.57
4228 7132 7.043300 ACATGGATTATCAATAATGGGCCTA 57.957 36.000 4.53 0.00 33.37 3.93
4229 7133 5.907421 ACATGGATTATCAATAATGGGCCT 58.093 37.500 4.53 0.00 33.37 5.19
4230 7134 6.891908 AGTACATGGATTATCAATAATGGGCC 59.108 38.462 0.00 0.00 33.37 5.80
4231 7135 7.944729 AGTACATGGATTATCAATAATGGGC 57.055 36.000 0.00 0.00 33.37 5.36
4263 7167 9.438228 TCTGGTGTGTTTTATACGAAATATCAA 57.562 29.630 0.00 0.00 0.00 2.57
4264 7168 9.607988 ATCTGGTGTGTTTTATACGAAATATCA 57.392 29.630 0.00 0.00 0.00 2.15
4270 7174 9.438228 TGAAATATCTGGTGTGTTTTATACGAA 57.562 29.630 0.00 0.00 0.00 3.85
4271 7175 9.607988 ATGAAATATCTGGTGTGTTTTATACGA 57.392 29.630 0.00 0.00 0.00 3.43
4290 7194 9.562408 TGGTTGCTTTTATACGGATATGAAATA 57.438 29.630 0.00 0.00 28.90 1.40
4291 7195 8.458573 TGGTTGCTTTTATACGGATATGAAAT 57.541 30.769 0.00 0.00 28.90 2.17
4292 7196 7.867305 TGGTTGCTTTTATACGGATATGAAA 57.133 32.000 0.00 0.00 0.00 2.69
4293 7197 7.717436 TCATGGTTGCTTTTATACGGATATGAA 59.283 33.333 0.00 0.00 0.00 2.57
4294 7198 7.220740 TCATGGTTGCTTTTATACGGATATGA 58.779 34.615 0.00 0.00 0.00 2.15
4295 7199 7.433708 TCATGGTTGCTTTTATACGGATATG 57.566 36.000 0.00 0.00 0.00 1.78
4296 7200 8.635765 AATCATGGTTGCTTTTATACGGATAT 57.364 30.769 0.00 0.00 0.00 1.63
4297 7201 8.458573 AAATCATGGTTGCTTTTATACGGATA 57.541 30.769 0.00 0.00 0.00 2.59
4298 7202 6.959639 AATCATGGTTGCTTTTATACGGAT 57.040 33.333 0.00 0.00 0.00 4.18
4299 7203 6.375736 TGAAATCATGGTTGCTTTTATACGGA 59.624 34.615 0.00 0.00 0.00 4.69
4300 7204 6.559810 TGAAATCATGGTTGCTTTTATACGG 58.440 36.000 0.00 0.00 0.00 4.02
4301 7205 9.729023 TTATGAAATCATGGTTGCTTTTATACG 57.271 29.630 6.17 0.00 37.15 3.06
4304 7208 9.467258 CGATTATGAAATCATGGTTGCTTTTAT 57.533 29.630 6.17 0.00 41.44 1.40
4305 7209 8.681806 TCGATTATGAAATCATGGTTGCTTTTA 58.318 29.630 6.17 0.00 41.44 1.52
4306 7210 7.546358 TCGATTATGAAATCATGGTTGCTTTT 58.454 30.769 6.17 0.00 41.44 2.27
4307 7211 7.099266 TCGATTATGAAATCATGGTTGCTTT 57.901 32.000 6.17 0.00 41.44 3.51
4308 7212 6.698008 TCGATTATGAAATCATGGTTGCTT 57.302 33.333 6.17 0.00 41.44 3.91
4309 7213 6.698008 TTCGATTATGAAATCATGGTTGCT 57.302 33.333 6.17 0.00 41.44 3.91
4310 7214 7.935338 AATTCGATTATGAAATCATGGTTGC 57.065 32.000 6.17 0.00 41.44 4.17
4311 7215 9.949174 TGTAATTCGATTATGAAATCATGGTTG 57.051 29.630 6.17 0.00 41.44 3.77
4324 7228 9.295214 CGAAGCTATCTGATGTAATTCGATTAT 57.705 33.333 16.89 0.00 40.36 1.28
4325 7229 7.755373 CCGAAGCTATCTGATGTAATTCGATTA 59.245 37.037 20.54 0.00 40.36 1.75
4326 7230 6.587990 CCGAAGCTATCTGATGTAATTCGATT 59.412 38.462 20.54 0.00 40.36 3.34
4327 7231 6.096036 CCGAAGCTATCTGATGTAATTCGAT 58.904 40.000 20.54 0.00 40.36 3.59
4328 7232 5.461526 CCGAAGCTATCTGATGTAATTCGA 58.538 41.667 20.54 0.00 40.36 3.71
4329 7233 4.090642 GCCGAAGCTATCTGATGTAATTCG 59.909 45.833 15.77 15.77 38.33 3.34
4330 7234 4.991056 TGCCGAAGCTATCTGATGTAATTC 59.009 41.667 0.00 0.00 40.80 2.17
4331 7235 4.752101 GTGCCGAAGCTATCTGATGTAATT 59.248 41.667 0.00 0.00 40.80 1.40
4332 7236 4.039730 AGTGCCGAAGCTATCTGATGTAAT 59.960 41.667 0.00 0.00 40.80 1.89
4333 7237 3.384789 AGTGCCGAAGCTATCTGATGTAA 59.615 43.478 0.00 0.00 40.80 2.41
4334 7238 2.959030 AGTGCCGAAGCTATCTGATGTA 59.041 45.455 0.00 0.00 40.80 2.29
4335 7239 1.759445 AGTGCCGAAGCTATCTGATGT 59.241 47.619 0.00 0.00 40.80 3.06
4336 7240 2.223900 TGAGTGCCGAAGCTATCTGATG 60.224 50.000 0.00 0.00 40.80 3.07
4337 7241 2.034878 TGAGTGCCGAAGCTATCTGAT 58.965 47.619 0.00 0.00 40.80 2.90
4338 7242 1.406898 CTGAGTGCCGAAGCTATCTGA 59.593 52.381 0.00 0.00 40.80 3.27
4339 7243 1.135915 ACTGAGTGCCGAAGCTATCTG 59.864 52.381 0.00 0.00 40.80 2.90
4340 7244 1.479709 ACTGAGTGCCGAAGCTATCT 58.520 50.000 0.00 0.00 40.80 1.98
4341 7245 2.301577 AACTGAGTGCCGAAGCTATC 57.698 50.000 0.00 0.00 40.80 2.08
4342 7246 2.479730 CGTAACTGAGTGCCGAAGCTAT 60.480 50.000 0.00 0.00 40.80 2.97
4343 7247 1.135489 CGTAACTGAGTGCCGAAGCTA 60.135 52.381 0.00 0.00 40.80 3.32
4344 7248 0.388649 CGTAACTGAGTGCCGAAGCT 60.389 55.000 0.00 0.00 40.80 3.74
4345 7249 1.956620 GCGTAACTGAGTGCCGAAGC 61.957 60.000 8.14 0.00 40.48 3.86
4346 7250 1.352156 GGCGTAACTGAGTGCCGAAG 61.352 60.000 8.14 0.00 37.81 3.79
4347 7251 1.373748 GGCGTAACTGAGTGCCGAA 60.374 57.895 8.14 0.00 37.81 4.30
4348 7252 2.260434 GGCGTAACTGAGTGCCGA 59.740 61.111 8.14 0.00 37.81 5.54
4351 7255 4.116961 TGTATAATGGCGTAACTGAGTGC 58.883 43.478 0.00 0.00 0.00 4.40
4352 7256 5.579119 TGTTGTATAATGGCGTAACTGAGTG 59.421 40.000 0.00 0.00 0.00 3.51
4353 7257 5.726397 TGTTGTATAATGGCGTAACTGAGT 58.274 37.500 0.00 0.00 0.00 3.41
4354 7258 5.276868 GCTGTTGTATAATGGCGTAACTGAG 60.277 44.000 0.00 0.00 0.00 3.35
4355 7259 4.569162 GCTGTTGTATAATGGCGTAACTGA 59.431 41.667 0.00 0.00 0.00 3.41
4356 7260 4.331443 TGCTGTTGTATAATGGCGTAACTG 59.669 41.667 0.00 0.00 0.00 3.16
4357 7261 4.331717 GTGCTGTTGTATAATGGCGTAACT 59.668 41.667 0.00 0.00 0.00 2.24
4358 7262 4.495184 GGTGCTGTTGTATAATGGCGTAAC 60.495 45.833 0.00 0.00 0.00 2.50
4359 7263 3.623960 GGTGCTGTTGTATAATGGCGTAA 59.376 43.478 0.00 0.00 0.00 3.18
4360 7264 3.199677 GGTGCTGTTGTATAATGGCGTA 58.800 45.455 0.00 0.00 0.00 4.42
4361 7265 2.014128 GGTGCTGTTGTATAATGGCGT 58.986 47.619 0.00 0.00 0.00 5.68
4362 7266 2.013400 TGGTGCTGTTGTATAATGGCG 58.987 47.619 0.00 0.00 0.00 5.69
4363 7267 3.443681 ACTTGGTGCTGTTGTATAATGGC 59.556 43.478 0.00 0.00 0.00 4.40
4364 7268 5.643379 AACTTGGTGCTGTTGTATAATGG 57.357 39.130 0.00 0.00 0.00 3.16
4365 7269 6.582295 GTGAAACTTGGTGCTGTTGTATAATG 59.418 38.462 0.00 0.00 0.00 1.90
4366 7270 6.264292 TGTGAAACTTGGTGCTGTTGTATAAT 59.736 34.615 0.00 0.00 38.04 1.28
4367 7271 5.590663 TGTGAAACTTGGTGCTGTTGTATAA 59.409 36.000 0.00 0.00 38.04 0.98
4368 7272 5.126779 TGTGAAACTTGGTGCTGTTGTATA 58.873 37.500 0.00 0.00 38.04 1.47
4369 7273 3.951037 TGTGAAACTTGGTGCTGTTGTAT 59.049 39.130 0.00 0.00 38.04 2.29
4370 7274 3.348119 TGTGAAACTTGGTGCTGTTGTA 58.652 40.909 0.00 0.00 38.04 2.41
4371 7275 2.166829 TGTGAAACTTGGTGCTGTTGT 58.833 42.857 0.00 0.00 38.04 3.32
4372 7276 2.937469 TGTGAAACTTGGTGCTGTTG 57.063 45.000 0.00 0.00 38.04 3.33
4373 7277 2.481795 GCATGTGAAACTTGGTGCTGTT 60.482 45.455 0.00 0.00 41.80 3.16
4374 7278 1.067516 GCATGTGAAACTTGGTGCTGT 59.932 47.619 0.00 0.00 41.80 4.40
4375 7279 1.067364 TGCATGTGAAACTTGGTGCTG 59.933 47.619 0.00 0.00 41.80 4.41
4376 7280 1.338973 CTGCATGTGAAACTTGGTGCT 59.661 47.619 0.00 0.00 41.80 4.40
4377 7281 1.774639 CTGCATGTGAAACTTGGTGC 58.225 50.000 0.00 0.00 41.80 5.01
4378 7282 1.067364 TGCTGCATGTGAAACTTGGTG 59.933 47.619 0.00 0.00 41.80 4.17
4379 7283 1.401761 TGCTGCATGTGAAACTTGGT 58.598 45.000 0.00 0.00 41.80 3.67
4380 7284 2.029739 TGATGCTGCATGTGAAACTTGG 60.030 45.455 21.53 0.00 41.80 3.61
4381 7285 3.291809 TGATGCTGCATGTGAAACTTG 57.708 42.857 21.53 0.00 44.10 3.16
4382 7286 4.325028 TTTGATGCTGCATGTGAAACTT 57.675 36.364 21.53 0.00 38.04 2.66
4383 7287 4.053295 GTTTTGATGCTGCATGTGAAACT 58.947 39.130 21.53 0.00 38.04 2.66
4384 7288 3.184986 GGTTTTGATGCTGCATGTGAAAC 59.815 43.478 21.53 22.63 37.35 2.78
4385 7289 3.069872 AGGTTTTGATGCTGCATGTGAAA 59.930 39.130 21.53 13.93 0.00 2.69
4386 7290 2.629137 AGGTTTTGATGCTGCATGTGAA 59.371 40.909 21.53 8.68 0.00 3.18
4387 7291 2.241160 AGGTTTTGATGCTGCATGTGA 58.759 42.857 21.53 2.39 0.00 3.58
4388 7292 2.736144 AGGTTTTGATGCTGCATGTG 57.264 45.000 21.53 0.00 0.00 3.21
4389 7293 3.395639 CAAAGGTTTTGATGCTGCATGT 58.604 40.909 21.53 0.00 0.00 3.21
4390 7294 2.739913 CCAAAGGTTTTGATGCTGCATG 59.260 45.455 21.53 2.56 0.00 4.06
4391 7295 2.633967 TCCAAAGGTTTTGATGCTGCAT 59.366 40.909 16.20 16.20 0.00 3.96
4392 7296 2.037901 TCCAAAGGTTTTGATGCTGCA 58.962 42.857 4.13 4.13 0.00 4.41
4393 7297 2.818130 TCCAAAGGTTTTGATGCTGC 57.182 45.000 3.24 0.00 0.00 5.25
4394 7298 4.696455 ACTTTCCAAAGGTTTTGATGCTG 58.304 39.130 4.13 0.00 40.31 4.41
4395 7299 5.509670 GCTACTTTCCAAAGGTTTTGATGCT 60.510 40.000 4.13 0.00 40.31 3.79
4396 7300 4.686091 GCTACTTTCCAAAGGTTTTGATGC 59.314 41.667 4.13 0.00 40.31 3.91
4397 7301 5.841810 TGCTACTTTCCAAAGGTTTTGATG 58.158 37.500 4.13 0.00 40.31 3.07
4398 7302 6.267471 TGATGCTACTTTCCAAAGGTTTTGAT 59.733 34.615 4.13 0.00 40.31 2.57
4399 7303 5.596361 TGATGCTACTTTCCAAAGGTTTTGA 59.404 36.000 4.13 0.00 40.31 2.69
4400 7304 5.841810 TGATGCTACTTTCCAAAGGTTTTG 58.158 37.500 4.13 0.00 40.31 2.44
4401 7305 6.670695 ATGATGCTACTTTCCAAAGGTTTT 57.329 33.333 4.13 0.00 40.31 2.43
4402 7306 6.719370 TGTATGATGCTACTTTCCAAAGGTTT 59.281 34.615 4.13 0.00 40.31 3.27
4403 7307 6.151144 GTGTATGATGCTACTTTCCAAAGGTT 59.849 38.462 4.13 0.00 40.31 3.50
4404 7308 5.648092 GTGTATGATGCTACTTTCCAAAGGT 59.352 40.000 4.13 0.00 40.31 3.50
4405 7309 5.220662 CGTGTATGATGCTACTTTCCAAAGG 60.221 44.000 4.13 0.00 40.31 3.11
4406 7310 5.220662 CCGTGTATGATGCTACTTTCCAAAG 60.221 44.000 0.00 0.00 41.73 2.77
4407 7311 4.634004 CCGTGTATGATGCTACTTTCCAAA 59.366 41.667 0.00 0.00 0.00 3.28
4408 7312 4.188462 CCGTGTATGATGCTACTTTCCAA 58.812 43.478 0.00 0.00 0.00 3.53
4409 7313 3.196901 ACCGTGTATGATGCTACTTTCCA 59.803 43.478 0.00 0.00 0.00 3.53
4410 7314 3.793559 ACCGTGTATGATGCTACTTTCC 58.206 45.455 0.00 0.00 0.00 3.13
4411 7315 6.897259 TTTACCGTGTATGATGCTACTTTC 57.103 37.500 0.00 0.00 0.00 2.62
4412 7316 8.418662 TCTATTTACCGTGTATGATGCTACTTT 58.581 33.333 0.00 0.00 0.00 2.66
4413 7317 7.866393 GTCTATTTACCGTGTATGATGCTACTT 59.134 37.037 0.00 0.00 0.00 2.24
4414 7318 7.013942 TGTCTATTTACCGTGTATGATGCTACT 59.986 37.037 0.00 0.00 0.00 2.57
4415 7319 7.143340 TGTCTATTTACCGTGTATGATGCTAC 58.857 38.462 0.00 0.00 0.00 3.58
4416 7320 7.229907 TCTGTCTATTTACCGTGTATGATGCTA 59.770 37.037 0.00 0.00 0.00 3.49
4417 7321 6.040504 TCTGTCTATTTACCGTGTATGATGCT 59.959 38.462 0.00 0.00 0.00 3.79
4418 7322 6.213677 TCTGTCTATTTACCGTGTATGATGC 58.786 40.000 0.00 0.00 0.00 3.91
4419 7323 8.082242 TCATCTGTCTATTTACCGTGTATGATG 58.918 37.037 0.00 0.00 0.00 3.07
4420 7324 8.178313 TCATCTGTCTATTTACCGTGTATGAT 57.822 34.615 0.00 0.00 0.00 2.45
4421 7325 7.576861 TCATCTGTCTATTTACCGTGTATGA 57.423 36.000 0.00 0.00 0.00 2.15
4422 7326 8.818141 ATTCATCTGTCTATTTACCGTGTATG 57.182 34.615 0.00 0.00 0.00 2.39
4423 7327 8.861086 AGATTCATCTGTCTATTTACCGTGTAT 58.139 33.333 0.00 0.00 35.42 2.29
4424 7328 8.234136 AGATTCATCTGTCTATTTACCGTGTA 57.766 34.615 0.00 0.00 35.42 2.90
4425 7329 7.113658 AGATTCATCTGTCTATTTACCGTGT 57.886 36.000 0.00 0.00 35.42 4.49
4426 7330 7.203218 TGAGATTCATCTGTCTATTTACCGTG 58.797 38.462 0.00 0.00 37.25 4.94
4427 7331 7.348080 TGAGATTCATCTGTCTATTTACCGT 57.652 36.000 0.00 0.00 37.25 4.83
4442 7346 4.205587 GCAGTTTCCCAGATGAGATTCAT 58.794 43.478 0.00 0.00 40.34 2.57
4443 7347 3.009363 TGCAGTTTCCCAGATGAGATTCA 59.991 43.478 0.00 0.00 0.00 2.57
4444 7348 3.614092 TGCAGTTTCCCAGATGAGATTC 58.386 45.455 0.00 0.00 0.00 2.52
4445 7349 3.265221 TCTGCAGTTTCCCAGATGAGATT 59.735 43.478 14.67 0.00 33.44 2.40
4446 7350 2.842496 TCTGCAGTTTCCCAGATGAGAT 59.158 45.455 14.67 0.00 33.44 2.75
4447 7351 2.259917 TCTGCAGTTTCCCAGATGAGA 58.740 47.619 14.67 0.00 33.44 3.27
4448 7352 2.775911 TCTGCAGTTTCCCAGATGAG 57.224 50.000 14.67 0.00 33.44 2.90
4449 7353 2.877300 GCTTCTGCAGTTTCCCAGATGA 60.877 50.000 14.67 0.00 37.87 2.92
4450 7354 1.471684 GCTTCTGCAGTTTCCCAGATG 59.528 52.381 14.67 0.00 37.87 2.90
4451 7355 1.831580 GCTTCTGCAGTTTCCCAGAT 58.168 50.000 14.67 0.00 37.87 2.90
4452 7356 0.603707 CGCTTCTGCAGTTTCCCAGA 60.604 55.000 14.67 0.00 39.64 3.86
4453 7357 1.580845 CCGCTTCTGCAGTTTCCCAG 61.581 60.000 14.67 2.88 39.64 4.45
4454 7358 1.600636 CCGCTTCTGCAGTTTCCCA 60.601 57.895 14.67 0.00 39.64 4.37
4455 7359 0.889186 TTCCGCTTCTGCAGTTTCCC 60.889 55.000 14.67 0.00 39.64 3.97
4456 7360 0.519077 CTTCCGCTTCTGCAGTTTCC 59.481 55.000 14.67 0.12 39.64 3.13
4457 7361 0.519077 CCTTCCGCTTCTGCAGTTTC 59.481 55.000 14.67 2.80 39.64 2.78
4458 7362 1.518903 GCCTTCCGCTTCTGCAGTTT 61.519 55.000 14.67 0.00 39.64 2.66
4459 7363 1.968540 GCCTTCCGCTTCTGCAGTT 60.969 57.895 14.67 0.00 39.64 3.16
4460 7364 2.359230 GCCTTCCGCTTCTGCAGT 60.359 61.111 14.67 0.00 39.64 4.40
4461 7365 1.518056 TTTGCCTTCCGCTTCTGCAG 61.518 55.000 7.63 7.63 39.64 4.41
4462 7366 0.895100 ATTTGCCTTCCGCTTCTGCA 60.895 50.000 0.00 0.00 39.64 4.41
4463 7367 1.094785 TATTTGCCTTCCGCTTCTGC 58.905 50.000 0.00 0.00 38.78 4.26
4464 7368 3.378112 TCAATATTTGCCTTCCGCTTCTG 59.622 43.478 0.00 0.00 38.78 3.02
4465 7369 3.620488 TCAATATTTGCCTTCCGCTTCT 58.380 40.909 0.00 0.00 38.78 2.85
4466 7370 3.793465 GCTCAATATTTGCCTTCCGCTTC 60.793 47.826 0.00 0.00 38.78 3.86
4467 7371 2.099756 GCTCAATATTTGCCTTCCGCTT 59.900 45.455 0.00 0.00 38.78 4.68
4468 7372 1.678101 GCTCAATATTTGCCTTCCGCT 59.322 47.619 0.00 0.00 38.78 5.52
4469 7373 2.125461 GCTCAATATTTGCCTTCCGC 57.875 50.000 0.00 0.00 38.31 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.