Multiple sequence alignment - TraesCS2A01G075900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G075900 chr2A 100.000 2711 0 0 688 3398 33712526 33715236 0.000000e+00 5007.0
1 TraesCS2A01G075900 chr2A 81.707 1547 235 21 864 2398 33652884 33651374 0.000000e+00 1245.0
2 TraesCS2A01G075900 chr2A 100.000 302 0 0 1 302 33711839 33712140 2.960000e-155 558.0
3 TraesCS2A01G075900 chr2A 91.186 295 21 5 2782 3074 195961181 195960890 2.460000e-106 396.0
4 TraesCS2A01G075900 chr2B 95.202 1980 82 10 688 2658 52104849 52106824 0.000000e+00 3118.0
5 TraesCS2A01G075900 chr2B 83.182 1546 241 16 864 2398 51878609 51877072 0.000000e+00 1397.0
6 TraesCS2A01G075900 chr2B 81.117 1218 206 17 1196 2398 52077006 52078214 0.000000e+00 953.0
7 TraesCS2A01G075900 chr2B 82.863 957 153 11 1449 2398 52113230 52114182 0.000000e+00 848.0
8 TraesCS2A01G075900 chr2B 89.985 649 62 2 1636 2284 51765918 51765273 0.000000e+00 835.0
9 TraesCS2A01G075900 chr2B 83.600 500 64 5 1926 2407 51850902 51851401 1.440000e-123 453.0
10 TraesCS2A01G075900 chr2B 82.126 414 66 6 1532 1938 51771365 51771777 6.980000e-92 348.0
11 TraesCS2A01G075900 chr2B 79.861 144 23 3 25 162 186381897 186381754 2.160000e-17 100.0
12 TraesCS2A01G075900 chr2B 75.904 166 36 3 1 162 185764321 185764486 7.820000e-12 82.4
13 TraesCS2A01G075900 chr2B 97.143 35 0 1 2529 2562 158122678 158122712 1.320000e-04 58.4
14 TraesCS2A01G075900 chr2D 82.228 1643 260 22 864 2483 31745075 31743442 0.000000e+00 1387.0
15 TraesCS2A01G075900 chr2D 82.297 1576 242 28 838 2398 31857999 31859552 0.000000e+00 1330.0
16 TraesCS2A01G075900 chr2D 77.857 140 30 1 11 149 292255801 292255662 6.040000e-13 86.1
17 TraesCS2A01G075900 chr1A 93.312 628 27 5 2783 3398 579411585 579412209 0.000000e+00 913.0
18 TraesCS2A01G075900 chr1A 91.905 630 25 8 2786 3398 553691748 553691128 0.000000e+00 857.0
19 TraesCS2A01G075900 chr1A 91.853 626 27 9 2785 3398 510736193 510735580 0.000000e+00 852.0
20 TraesCS2A01G075900 chr1A 89.051 137 13 2 2652 2787 12012718 12012853 5.830000e-38 169.0
21 TraesCS2A01G075900 chr5A 92.516 628 26 10 2783 3398 611878315 611877697 0.000000e+00 880.0
22 TraesCS2A01G075900 chr5A 89.247 651 25 14 2783 3398 580155751 580155111 0.000000e+00 773.0
23 TraesCS2A01G075900 chr5A 88.957 652 26 15 2783 3398 580121071 580120430 0.000000e+00 763.0
24 TraesCS2A01G075900 chr5A 97.143 35 0 1 2532 2565 106148821 106148855 1.320000e-04 58.4
25 TraesCS2A01G075900 chr6A 91.798 634 25 9 2783 3398 20516773 20516149 0.000000e+00 857.0
26 TraesCS2A01G075900 chr6A 84.252 127 19 1 10 136 66426263 66426388 4.600000e-24 122.0
27 TraesCS2A01G075900 chr4A 91.746 630 21 10 2786 3398 28588964 28588349 0.000000e+00 846.0
28 TraesCS2A01G075900 chr4A 91.461 445 14 6 2784 3211 195193178 195193615 1.050000e-164 590.0
29 TraesCS2A01G075900 chr4A 90.164 305 16 3 2782 3074 585882081 585881779 5.320000e-103 385.0
30 TraesCS2A01G075900 chr7A 90.236 635 30 16 2786 3398 490085838 490086462 0.000000e+00 800.0
31 TraesCS2A01G075900 chr7A 90.141 639 26 8 2782 3398 671260733 671261356 0.000000e+00 797.0
32 TraesCS2A01G075900 chr7A 91.475 305 12 4 2784 3074 18068939 18069243 1.140000e-109 407.0
33 TraesCS2A01G075900 chr7A 87.500 128 16 0 2660 2787 536953173 536953300 7.600000e-32 148.0
34 TraesCS2A01G075900 chr7A 94.595 37 2 0 2528 2564 708417946 708417910 1.320000e-04 58.4
35 TraesCS2A01G075900 chr3A 88.939 660 29 17 2780 3398 710789455 710788799 0.000000e+00 774.0
36 TraesCS2A01G075900 chr3A 84.848 99 12 3 24 122 471827525 471827620 2.790000e-16 97.1
37 TraesCS2A01G075900 chr5D 86.762 627 43 17 2786 3387 528119743 528119132 0.000000e+00 662.0
38 TraesCS2A01G075900 chr5D 85.385 130 18 1 2657 2786 529645688 529645560 2.130000e-27 134.0
39 TraesCS2A01G075900 chr5D 91.176 68 6 0 24 91 67044587 67044520 3.610000e-15 93.5
40 TraesCS2A01G075900 chr5D 100.000 29 0 0 2532 2560 97581465 97581437 2.000000e-03 54.7
41 TraesCS2A01G075900 chr3D 85.110 638 40 17 2785 3398 576788458 576789064 4.850000e-168 601.0
42 TraesCS2A01G075900 chr3D 83.333 72 12 0 24 95 9603739 9603668 2.190000e-07 67.6
43 TraesCS2A01G075900 chr3D 100.000 32 0 0 65 96 489157423 489157392 3.660000e-05 60.2
44 TraesCS2A01G075900 chr6B 90.769 130 12 0 2658 2787 678886586 678886715 1.250000e-39 174.0
45 TraesCS2A01G075900 chr6B 84.906 106 16 0 25 130 672617740 672617845 1.290000e-19 108.0
46 TraesCS2A01G075900 chr6B 79.817 109 19 3 24 130 504724473 504724580 3.640000e-10 76.8
47 TraesCS2A01G075900 chr5B 91.379 116 10 0 2672 2787 700274178 700274063 3.510000e-35 159.0
48 TraesCS2A01G075900 chr5B 91.379 116 10 0 2672 2787 700306132 700306017 3.510000e-35 159.0
49 TraesCS2A01G075900 chr5B 77.160 162 29 4 1 162 6603681 6603834 1.680000e-13 87.9
50 TraesCS2A01G075900 chrUn 90.517 116 11 0 2672 2787 212367173 212367288 1.630000e-33 154.0
51 TraesCS2A01G075900 chrUn 90.991 111 10 0 2672 2782 375118307 375118417 2.110000e-32 150.0
52 TraesCS2A01G075900 chrUn 79.054 148 21 6 24 162 82512765 82512911 3.610000e-15 93.5
53 TraesCS2A01G075900 chr3B 85.496 131 16 3 2658 2787 81302430 81302302 2.130000e-27 134.0
54 TraesCS2A01G075900 chr3B 80.142 141 25 3 24 162 181680216 181680355 6.000000e-18 102.0
55 TraesCS2A01G075900 chr7B 80.851 141 25 2 22 162 657621530 657621668 3.580000e-20 110.0
56 TraesCS2A01G075900 chr7B 78.659 164 33 2 1 162 3682436 3682273 1.290000e-19 108.0
57 TraesCS2A01G075900 chr7B 94.872 39 2 0 2528 2566 410615975 410616013 1.020000e-05 62.1
58 TraesCS2A01G075900 chr7D 80.576 139 25 1 24 162 620712730 620712866 4.640000e-19 106.0
59 TraesCS2A01G075900 chr7D 79.577 142 25 3 24 162 586794616 586794756 7.760000e-17 99.0
60 TraesCS2A01G075900 chr1D 83.824 68 10 1 24 91 55039723 55039657 2.830000e-06 63.9
61 TraesCS2A01G075900 chr1D 96.970 33 1 0 2532 2564 108268698 108268666 4.740000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G075900 chr2A 33711839 33715236 3397 False 2782.5 5007 100.000 1 3398 2 chr2A.!!$F1 3397
1 TraesCS2A01G075900 chr2A 33651374 33652884 1510 True 1245.0 1245 81.707 864 2398 1 chr2A.!!$R1 1534
2 TraesCS2A01G075900 chr2B 52104849 52106824 1975 False 3118.0 3118 95.202 688 2658 1 chr2B.!!$F4 1970
3 TraesCS2A01G075900 chr2B 51877072 51878609 1537 True 1397.0 1397 83.182 864 2398 1 chr2B.!!$R2 1534
4 TraesCS2A01G075900 chr2B 52077006 52078214 1208 False 953.0 953 81.117 1196 2398 1 chr2B.!!$F3 1202
5 TraesCS2A01G075900 chr2B 52113230 52114182 952 False 848.0 848 82.863 1449 2398 1 chr2B.!!$F5 949
6 TraesCS2A01G075900 chr2B 51765273 51765918 645 True 835.0 835 89.985 1636 2284 1 chr2B.!!$R1 648
7 TraesCS2A01G075900 chr2D 31743442 31745075 1633 True 1387.0 1387 82.228 864 2483 1 chr2D.!!$R1 1619
8 TraesCS2A01G075900 chr2D 31857999 31859552 1553 False 1330.0 1330 82.297 838 2398 1 chr2D.!!$F1 1560
9 TraesCS2A01G075900 chr1A 579411585 579412209 624 False 913.0 913 93.312 2783 3398 1 chr1A.!!$F2 615
10 TraesCS2A01G075900 chr1A 553691128 553691748 620 True 857.0 857 91.905 2786 3398 1 chr1A.!!$R2 612
11 TraesCS2A01G075900 chr1A 510735580 510736193 613 True 852.0 852 91.853 2785 3398 1 chr1A.!!$R1 613
12 TraesCS2A01G075900 chr5A 611877697 611878315 618 True 880.0 880 92.516 2783 3398 1 chr5A.!!$R3 615
13 TraesCS2A01G075900 chr5A 580155111 580155751 640 True 773.0 773 89.247 2783 3398 1 chr5A.!!$R2 615
14 TraesCS2A01G075900 chr5A 580120430 580121071 641 True 763.0 763 88.957 2783 3398 1 chr5A.!!$R1 615
15 TraesCS2A01G075900 chr6A 20516149 20516773 624 True 857.0 857 91.798 2783 3398 1 chr6A.!!$R1 615
16 TraesCS2A01G075900 chr4A 28588349 28588964 615 True 846.0 846 91.746 2786 3398 1 chr4A.!!$R1 612
17 TraesCS2A01G075900 chr7A 490085838 490086462 624 False 800.0 800 90.236 2786 3398 1 chr7A.!!$F2 612
18 TraesCS2A01G075900 chr7A 671260733 671261356 623 False 797.0 797 90.141 2782 3398 1 chr7A.!!$F4 616
19 TraesCS2A01G075900 chr3A 710788799 710789455 656 True 774.0 774 88.939 2780 3398 1 chr3A.!!$R1 618
20 TraesCS2A01G075900 chr5D 528119132 528119743 611 True 662.0 662 86.762 2786 3387 1 chr5D.!!$R3 601
21 TraesCS2A01G075900 chr3D 576788458 576789064 606 False 601.0 601 85.110 2785 3398 1 chr3D.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.036732 AGGATGTGCATGTCCACGTT 59.963 50.0 18.94 0.0 38.55 3.99 F
103 104 0.447801 GGATGTGCATGTCCACGTTC 59.552 55.0 13.67 0.0 38.55 3.95 F
1537 1552 0.447801 GTTGCACCTAAGCACCATCG 59.552 55.0 0.00 0.0 45.61 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1030 1042 0.042448 GCGAAACTGTGGTCGTTGTC 60.042 55.0 13.54 0.0 39.46 3.18 R
2097 2119 0.263172 ATCTCCCCTCATGACTCGGT 59.737 55.0 0.00 0.0 0.00 4.69 R
2729 2790 0.034896 GGTCGAGGTCCATTGTGTGT 59.965 55.0 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.694012 GTCGATTGTGAGGCGTTTATAG 57.306 45.455 0.00 0.00 0.00 1.31
22 23 3.489785 GTCGATTGTGAGGCGTTTATAGG 59.510 47.826 0.00 0.00 0.00 2.57
23 24 2.800544 CGATTGTGAGGCGTTTATAGGG 59.199 50.000 0.00 0.00 0.00 3.53
24 25 3.491964 CGATTGTGAGGCGTTTATAGGGA 60.492 47.826 0.00 0.00 0.00 4.20
25 26 2.973694 TGTGAGGCGTTTATAGGGAC 57.026 50.000 0.00 0.00 0.00 4.46
26 27 2.463752 TGTGAGGCGTTTATAGGGACT 58.536 47.619 0.00 0.00 46.37 3.85
27 28 2.835764 TGTGAGGCGTTTATAGGGACTT 59.164 45.455 0.00 0.00 41.75 3.01
28 29 3.118884 TGTGAGGCGTTTATAGGGACTTC 60.119 47.826 0.00 0.00 41.75 3.01
29 30 2.100252 TGAGGCGTTTATAGGGACTTCG 59.900 50.000 0.00 0.00 41.75 3.79
30 31 2.100418 GAGGCGTTTATAGGGACTTCGT 59.900 50.000 0.00 0.00 41.75 3.85
31 32 3.290710 AGGCGTTTATAGGGACTTCGTA 58.709 45.455 0.00 0.00 41.75 3.43
32 33 3.701040 AGGCGTTTATAGGGACTTCGTAA 59.299 43.478 0.00 0.00 41.75 3.18
33 34 4.160252 AGGCGTTTATAGGGACTTCGTAAA 59.840 41.667 0.00 0.00 41.75 2.01
34 35 4.869861 GGCGTTTATAGGGACTTCGTAAAA 59.130 41.667 0.00 0.00 41.75 1.52
35 36 5.525012 GGCGTTTATAGGGACTTCGTAAAAT 59.475 40.000 0.00 0.00 41.75 1.82
36 37 6.292542 GGCGTTTATAGGGACTTCGTAAAATC 60.293 42.308 0.00 0.00 41.75 2.17
37 38 6.478016 GCGTTTATAGGGACTTCGTAAAATCT 59.522 38.462 0.00 0.00 41.75 2.40
38 39 7.306457 GCGTTTATAGGGACTTCGTAAAATCTC 60.306 40.741 0.00 0.00 41.75 2.75
39 40 7.703621 CGTTTATAGGGACTTCGTAAAATCTCA 59.296 37.037 0.00 0.00 41.75 3.27
40 41 9.374838 GTTTATAGGGACTTCGTAAAATCTCAA 57.625 33.333 0.00 0.00 41.75 3.02
41 42 9.595823 TTTATAGGGACTTCGTAAAATCTCAAG 57.404 33.333 0.00 0.00 41.75 3.02
42 43 5.740290 AGGGACTTCGTAAAATCTCAAGA 57.260 39.130 0.00 0.00 27.25 3.02
43 44 6.301169 AGGGACTTCGTAAAATCTCAAGAT 57.699 37.500 0.00 0.00 27.25 2.40
44 45 6.109359 AGGGACTTCGTAAAATCTCAAGATG 58.891 40.000 0.00 0.00 27.25 2.90
45 46 5.875359 GGGACTTCGTAAAATCTCAAGATGT 59.125 40.000 0.00 0.00 34.49 3.06
46 47 6.371825 GGGACTTCGTAAAATCTCAAGATGTT 59.628 38.462 1.26 1.26 36.12 2.71
47 48 7.548075 GGGACTTCGTAAAATCTCAAGATGTTA 59.452 37.037 0.00 0.00 34.12 2.41
48 49 9.099454 GGACTTCGTAAAATCTCAAGATGTTAT 57.901 33.333 6.03 0.00 36.81 1.89
49 50 9.907576 GACTTCGTAAAATCTCAAGATGTTATG 57.092 33.333 12.94 12.94 40.30 1.90
50 51 8.391106 ACTTCGTAAAATCTCAAGATGTTATGC 58.609 33.333 13.84 1.07 39.45 3.14
51 52 7.246674 TCGTAAAATCTCAAGATGTTATGCC 57.753 36.000 13.84 0.54 39.45 4.40
52 53 6.019075 TCGTAAAATCTCAAGATGTTATGCCG 60.019 38.462 13.84 9.64 39.45 5.69
53 54 5.505173 AAAATCTCAAGATGTTATGCCGG 57.495 39.130 0.00 0.00 30.52 6.13
54 55 1.953559 TCTCAAGATGTTATGCCGGC 58.046 50.000 22.73 22.73 0.00 6.13
55 56 1.486310 TCTCAAGATGTTATGCCGGCT 59.514 47.619 29.70 15.76 0.00 5.52
56 57 2.092968 TCTCAAGATGTTATGCCGGCTT 60.093 45.455 29.70 24.47 0.00 4.35
57 58 3.133901 TCTCAAGATGTTATGCCGGCTTA 59.866 43.478 29.70 23.25 0.00 3.09
58 59 3.876914 CTCAAGATGTTATGCCGGCTTAA 59.123 43.478 29.70 27.65 0.00 1.85
59 60 4.460263 TCAAGATGTTATGCCGGCTTAAT 58.540 39.130 30.54 19.55 0.00 1.40
60 61 4.515191 TCAAGATGTTATGCCGGCTTAATC 59.485 41.667 30.54 24.98 0.00 1.75
61 62 4.357918 AGATGTTATGCCGGCTTAATCT 57.642 40.909 30.54 26.38 0.00 2.40
62 63 5.483685 AGATGTTATGCCGGCTTAATCTA 57.516 39.130 30.54 21.75 0.00 1.98
63 64 5.238583 AGATGTTATGCCGGCTTAATCTAC 58.761 41.667 30.54 21.34 0.00 2.59
64 65 3.735591 TGTTATGCCGGCTTAATCTACC 58.264 45.455 30.54 20.20 0.00 3.18
65 66 2.735134 GTTATGCCGGCTTAATCTACCG 59.265 50.000 30.54 0.00 46.50 4.02
84 85 3.032017 CGAAGGTGCTCATATGGGTAG 57.968 52.381 4.11 0.00 0.00 3.18
85 86 2.289072 CGAAGGTGCTCATATGGGTAGG 60.289 54.545 4.11 0.00 0.00 3.18
86 87 2.795291 AGGTGCTCATATGGGTAGGA 57.205 50.000 4.11 0.00 0.00 2.94
87 88 3.282135 AGGTGCTCATATGGGTAGGAT 57.718 47.619 4.11 0.00 0.00 3.24
88 89 2.909006 AGGTGCTCATATGGGTAGGATG 59.091 50.000 4.11 0.00 0.00 3.51
89 90 2.639839 GGTGCTCATATGGGTAGGATGT 59.360 50.000 4.11 0.00 0.00 3.06
90 91 3.557898 GGTGCTCATATGGGTAGGATGTG 60.558 52.174 4.11 0.00 0.00 3.21
91 92 2.038952 TGCTCATATGGGTAGGATGTGC 59.961 50.000 4.11 0.00 39.41 4.57
92 93 2.038952 GCTCATATGGGTAGGATGTGCA 59.961 50.000 4.11 0.00 39.01 4.57
93 94 3.307975 GCTCATATGGGTAGGATGTGCAT 60.308 47.826 4.11 0.00 39.01 3.96
94 95 4.259356 CTCATATGGGTAGGATGTGCATG 58.741 47.826 2.13 0.00 0.00 4.06
95 96 3.652387 TCATATGGGTAGGATGTGCATGT 59.348 43.478 2.13 0.00 0.00 3.21
96 97 2.645838 ATGGGTAGGATGTGCATGTC 57.354 50.000 0.00 0.00 0.00 3.06
97 98 0.546122 TGGGTAGGATGTGCATGTCC 59.454 55.000 11.30 11.30 34.64 4.02
98 99 0.546122 GGGTAGGATGTGCATGTCCA 59.454 55.000 18.94 0.33 36.96 4.02
99 100 1.668419 GGTAGGATGTGCATGTCCAC 58.332 55.000 18.94 14.57 36.96 4.02
100 101 1.290203 GTAGGATGTGCATGTCCACG 58.710 55.000 18.94 0.00 38.55 4.94
101 102 0.901827 TAGGATGTGCATGTCCACGT 59.098 50.000 18.94 0.85 38.55 4.49
102 103 0.036732 AGGATGTGCATGTCCACGTT 59.963 50.000 18.94 0.00 38.55 3.99
103 104 0.447801 GGATGTGCATGTCCACGTTC 59.552 55.000 13.67 0.00 38.55 3.95
104 105 1.155889 GATGTGCATGTCCACGTTCA 58.844 50.000 0.00 0.00 38.55 3.18
105 106 1.739466 GATGTGCATGTCCACGTTCAT 59.261 47.619 0.00 0.00 38.55 2.57
106 107 2.464157 TGTGCATGTCCACGTTCATA 57.536 45.000 0.00 0.00 38.55 2.15
107 108 2.772287 TGTGCATGTCCACGTTCATAA 58.228 42.857 0.00 0.00 38.55 1.90
108 109 3.342719 TGTGCATGTCCACGTTCATAAT 58.657 40.909 0.00 0.00 38.55 1.28
109 110 3.755905 TGTGCATGTCCACGTTCATAATT 59.244 39.130 0.00 0.00 38.55 1.40
110 111 4.938226 TGTGCATGTCCACGTTCATAATTA 59.062 37.500 0.00 0.00 38.55 1.40
111 112 5.588246 TGTGCATGTCCACGTTCATAATTAT 59.412 36.000 0.00 0.00 38.55 1.28
112 113 5.909054 GTGCATGTCCACGTTCATAATTATG 59.091 40.000 17.82 17.82 35.04 1.90
113 114 5.819901 TGCATGTCCACGTTCATAATTATGA 59.180 36.000 21.67 21.67 40.69 2.15
114 115 6.018016 TGCATGTCCACGTTCATAATTATGAG 60.018 38.462 23.61 17.20 42.99 2.90
115 116 6.017934 GCATGTCCACGTTCATAATTATGAGT 60.018 38.462 23.61 17.75 42.99 3.41
116 117 6.902224 TGTCCACGTTCATAATTATGAGTG 57.098 37.500 26.26 26.26 42.99 3.51
117 118 6.403049 TGTCCACGTTCATAATTATGAGTGT 58.597 36.000 28.44 24.72 42.99 3.55
118 119 7.548967 TGTCCACGTTCATAATTATGAGTGTA 58.451 34.615 28.44 19.54 42.99 2.90
119 120 8.201464 TGTCCACGTTCATAATTATGAGTGTAT 58.799 33.333 28.44 15.12 42.99 2.29
120 121 8.487970 GTCCACGTTCATAATTATGAGTGTATG 58.512 37.037 28.44 21.28 42.99 2.39
121 122 7.170828 TCCACGTTCATAATTATGAGTGTATGC 59.829 37.037 28.44 15.64 42.99 3.14
122 123 7.171508 CCACGTTCATAATTATGAGTGTATGCT 59.828 37.037 28.44 11.79 42.99 3.79
123 124 8.217115 CACGTTCATAATTATGAGTGTATGCTC 58.783 37.037 25.53 12.31 42.99 4.26
124 125 7.114953 ACGTTCATAATTATGAGTGTATGCTCG 59.885 37.037 23.61 18.49 42.99 5.03
125 126 7.114953 CGTTCATAATTATGAGTGTATGCTCGT 59.885 37.037 23.61 0.00 42.99 4.18
126 127 7.873739 TCATAATTATGAGTGTATGCTCGTG 57.126 36.000 21.67 0.00 37.76 4.35
127 128 7.433680 TCATAATTATGAGTGTATGCTCGTGT 58.566 34.615 21.67 0.00 37.76 4.49
128 129 8.573035 TCATAATTATGAGTGTATGCTCGTGTA 58.427 33.333 21.67 0.00 37.76 2.90
129 130 9.358872 CATAATTATGAGTGTATGCTCGTGTAT 57.641 33.333 18.92 0.00 38.28 2.29
130 131 7.643528 AATTATGAGTGTATGCTCGTGTATG 57.356 36.000 0.00 0.00 38.28 2.39
131 132 2.809446 TGAGTGTATGCTCGTGTATGC 58.191 47.619 0.00 0.00 38.28 3.14
132 133 1.781429 GAGTGTATGCTCGTGTATGCG 59.219 52.381 0.00 0.00 0.00 4.73
133 134 1.404035 AGTGTATGCTCGTGTATGCGA 59.596 47.619 0.00 0.00 39.22 5.10
142 143 3.604065 TCGTGTATGCGAGCTACTTAG 57.396 47.619 0.00 0.00 35.83 2.18
143 144 3.200483 TCGTGTATGCGAGCTACTTAGA 58.800 45.455 0.00 0.00 35.83 2.10
144 145 3.813724 TCGTGTATGCGAGCTACTTAGAT 59.186 43.478 0.00 0.00 35.83 1.98
145 146 4.275196 TCGTGTATGCGAGCTACTTAGATT 59.725 41.667 0.00 0.00 35.83 2.40
146 147 4.380087 CGTGTATGCGAGCTACTTAGATTG 59.620 45.833 0.00 0.00 0.00 2.67
147 148 5.282510 GTGTATGCGAGCTACTTAGATTGT 58.717 41.667 0.00 0.00 0.00 2.71
148 149 6.436261 GTGTATGCGAGCTACTTAGATTGTA 58.564 40.000 0.00 0.00 0.00 2.41
149 150 6.360148 GTGTATGCGAGCTACTTAGATTGTAC 59.640 42.308 0.00 0.00 0.00 2.90
150 151 4.303086 TGCGAGCTACTTAGATTGTACC 57.697 45.455 0.00 0.00 0.00 3.34
151 152 3.952323 TGCGAGCTACTTAGATTGTACCT 59.048 43.478 0.00 0.00 0.00 3.08
152 153 4.401519 TGCGAGCTACTTAGATTGTACCTT 59.598 41.667 0.00 0.00 0.00 3.50
153 154 4.740695 GCGAGCTACTTAGATTGTACCTTG 59.259 45.833 0.00 0.00 0.00 3.61
154 155 5.679127 GCGAGCTACTTAGATTGTACCTTGT 60.679 44.000 0.00 0.00 0.00 3.16
155 156 6.331061 CGAGCTACTTAGATTGTACCTTGTT 58.669 40.000 0.00 0.00 0.00 2.83
156 157 7.478322 CGAGCTACTTAGATTGTACCTTGTTA 58.522 38.462 0.00 0.00 0.00 2.41
157 158 7.972277 CGAGCTACTTAGATTGTACCTTGTTAA 59.028 37.037 0.00 0.00 0.00 2.01
158 159 9.649167 GAGCTACTTAGATTGTACCTTGTTAAA 57.351 33.333 0.00 0.00 0.00 1.52
182 183 8.557592 AAAAAGGTATAAAGTAAAGAGACCGG 57.442 34.615 0.00 0.00 0.00 5.28
183 184 7.486407 AAAGGTATAAAGTAAAGAGACCGGA 57.514 36.000 9.46 0.00 0.00 5.14
184 185 7.486407 AAGGTATAAAGTAAAGAGACCGGAA 57.514 36.000 9.46 0.00 0.00 4.30
185 186 7.486407 AGGTATAAAGTAAAGAGACCGGAAA 57.514 36.000 9.46 0.00 0.00 3.13
186 187 7.910584 AGGTATAAAGTAAAGAGACCGGAAAA 58.089 34.615 9.46 0.00 0.00 2.29
187 188 8.377799 AGGTATAAAGTAAAGAGACCGGAAAAA 58.622 33.333 9.46 0.00 0.00 1.94
188 189 8.446273 GGTATAAAGTAAAGAGACCGGAAAAAC 58.554 37.037 9.46 0.00 0.00 2.43
189 190 8.992073 GTATAAAGTAAAGAGACCGGAAAAACA 58.008 33.333 9.46 0.00 0.00 2.83
190 191 6.762702 AAAGTAAAGAGACCGGAAAAACAA 57.237 33.333 9.46 0.00 0.00 2.83
191 192 6.762702 AAGTAAAGAGACCGGAAAAACAAA 57.237 33.333 9.46 0.00 0.00 2.83
192 193 6.762702 AGTAAAGAGACCGGAAAAACAAAA 57.237 33.333 9.46 0.00 0.00 2.44
193 194 7.342769 AGTAAAGAGACCGGAAAAACAAAAT 57.657 32.000 9.46 0.00 0.00 1.82
194 195 8.454570 AGTAAAGAGACCGGAAAAACAAAATA 57.545 30.769 9.46 0.00 0.00 1.40
195 196 8.905850 AGTAAAGAGACCGGAAAAACAAAATAA 58.094 29.630 9.46 0.00 0.00 1.40
196 197 9.518906 GTAAAGAGACCGGAAAAACAAAATAAA 57.481 29.630 9.46 0.00 0.00 1.40
198 199 8.642908 AAGAGACCGGAAAAACAAAATAAAAG 57.357 30.769 9.46 0.00 0.00 2.27
199 200 8.002984 AGAGACCGGAAAAACAAAATAAAAGA 57.997 30.769 9.46 0.00 0.00 2.52
200 201 8.135529 AGAGACCGGAAAAACAAAATAAAAGAG 58.864 33.333 9.46 0.00 0.00 2.85
201 202 8.002984 AGACCGGAAAAACAAAATAAAAGAGA 57.997 30.769 9.46 0.00 0.00 3.10
202 203 8.471609 AGACCGGAAAAACAAAATAAAAGAGAA 58.528 29.630 9.46 0.00 0.00 2.87
203 204 9.089601 GACCGGAAAAACAAAATAAAAGAGAAA 57.910 29.630 9.46 0.00 0.00 2.52
204 205 9.438228 ACCGGAAAAACAAAATAAAAGAGAAAA 57.562 25.926 9.46 0.00 0.00 2.29
234 235 9.923143 AATAATAAACCAAAAAGCCTAACTGTC 57.077 29.630 0.00 0.00 0.00 3.51
235 236 6.969993 ATAAACCAAAAAGCCTAACTGTCA 57.030 33.333 0.00 0.00 0.00 3.58
236 237 5.669164 AAACCAAAAAGCCTAACTGTCAA 57.331 34.783 0.00 0.00 0.00 3.18
237 238 5.669164 AACCAAAAAGCCTAACTGTCAAA 57.331 34.783 0.00 0.00 0.00 2.69
238 239 5.262588 ACCAAAAAGCCTAACTGTCAAAG 57.737 39.130 0.00 0.00 0.00 2.77
239 240 4.953579 ACCAAAAAGCCTAACTGTCAAAGA 59.046 37.500 0.00 0.00 0.00 2.52
240 241 5.420739 ACCAAAAAGCCTAACTGTCAAAGAA 59.579 36.000 0.00 0.00 0.00 2.52
241 242 6.071051 ACCAAAAAGCCTAACTGTCAAAGAAA 60.071 34.615 0.00 0.00 0.00 2.52
242 243 6.816140 CCAAAAAGCCTAACTGTCAAAGAAAA 59.184 34.615 0.00 0.00 0.00 2.29
243 244 7.333174 CCAAAAAGCCTAACTGTCAAAGAAAAA 59.667 33.333 0.00 0.00 0.00 1.94
244 245 8.382875 CAAAAAGCCTAACTGTCAAAGAAAAAG 58.617 33.333 0.00 0.00 0.00 2.27
245 246 7.404671 AAAGCCTAACTGTCAAAGAAAAAGA 57.595 32.000 0.00 0.00 0.00 2.52
246 247 7.588497 AAGCCTAACTGTCAAAGAAAAAGAT 57.412 32.000 0.00 0.00 0.00 2.40
247 248 8.691661 AAGCCTAACTGTCAAAGAAAAAGATA 57.308 30.769 0.00 0.00 0.00 1.98
248 249 8.100508 AGCCTAACTGTCAAAGAAAAAGATAC 57.899 34.615 0.00 0.00 0.00 2.24
249 250 7.719633 AGCCTAACTGTCAAAGAAAAAGATACA 59.280 33.333 0.00 0.00 0.00 2.29
250 251 8.349983 GCCTAACTGTCAAAGAAAAAGATACAA 58.650 33.333 0.00 0.00 0.00 2.41
251 252 9.884465 CCTAACTGTCAAAGAAAAAGATACAAG 57.116 33.333 0.00 0.00 0.00 3.16
254 255 8.506168 ACTGTCAAAGAAAAAGATACAAGACA 57.494 30.769 0.00 0.00 0.00 3.41
255 256 8.398665 ACTGTCAAAGAAAAAGATACAAGACAC 58.601 33.333 0.00 0.00 0.00 3.67
256 257 8.275015 TGTCAAAGAAAAAGATACAAGACACA 57.725 30.769 0.00 0.00 0.00 3.72
257 258 8.181573 TGTCAAAGAAAAAGATACAAGACACAC 58.818 33.333 0.00 0.00 0.00 3.82
258 259 8.181573 GTCAAAGAAAAAGATACAAGACACACA 58.818 33.333 0.00 0.00 0.00 3.72
259 260 8.181573 TCAAAGAAAAAGATACAAGACACACAC 58.818 33.333 0.00 0.00 0.00 3.82
260 261 7.624360 AAGAAAAAGATACAAGACACACACA 57.376 32.000 0.00 0.00 0.00 3.72
261 262 7.016361 AGAAAAAGATACAAGACACACACAC 57.984 36.000 0.00 0.00 0.00 3.82
262 263 6.597672 AGAAAAAGATACAAGACACACACACA 59.402 34.615 0.00 0.00 0.00 3.72
263 264 6.751514 AAAAGATACAAGACACACACACAA 57.248 33.333 0.00 0.00 0.00 3.33
264 265 6.751514 AAAGATACAAGACACACACACAAA 57.248 33.333 0.00 0.00 0.00 2.83
265 266 6.751514 AAGATACAAGACACACACACAAAA 57.248 33.333 0.00 0.00 0.00 2.44
266 267 6.751514 AGATACAAGACACACACACAAAAA 57.248 33.333 0.00 0.00 0.00 1.94
289 290 4.829872 AAAACATACCCACGATCCTACA 57.170 40.909 0.00 0.00 0.00 2.74
290 291 4.829872 AAACATACCCACGATCCTACAA 57.170 40.909 0.00 0.00 0.00 2.41
291 292 5.367945 AAACATACCCACGATCCTACAAT 57.632 39.130 0.00 0.00 0.00 2.71
292 293 4.602340 ACATACCCACGATCCTACAATC 57.398 45.455 0.00 0.00 0.00 2.67
293 294 4.223953 ACATACCCACGATCCTACAATCT 58.776 43.478 0.00 0.00 0.00 2.40
294 295 5.391256 ACATACCCACGATCCTACAATCTA 58.609 41.667 0.00 0.00 0.00 1.98
295 296 6.017192 ACATACCCACGATCCTACAATCTAT 58.983 40.000 0.00 0.00 0.00 1.98
296 297 6.153000 ACATACCCACGATCCTACAATCTATC 59.847 42.308 0.00 0.00 0.00 2.08
297 298 3.506455 ACCCACGATCCTACAATCTATCG 59.494 47.826 0.00 0.00 45.06 2.92
298 299 3.756963 CCCACGATCCTACAATCTATCGA 59.243 47.826 10.21 0.00 42.88 3.59
299 300 4.399618 CCCACGATCCTACAATCTATCGAT 59.600 45.833 2.16 2.16 42.88 3.59
300 301 5.449314 CCCACGATCCTACAATCTATCGATC 60.449 48.000 0.00 0.00 42.88 3.69
301 302 5.355630 CCACGATCCTACAATCTATCGATCT 59.644 44.000 0.00 0.00 42.88 2.75
721 722 5.578727 TGTTTTGTGATTTGTGGCAAACTAC 59.421 36.000 0.00 1.00 31.62 2.73
777 778 4.039973 AGAAACATAACCGACTCAGGAACA 59.960 41.667 0.00 0.00 34.73 3.18
794 795 0.974383 ACAGGAACAAGGGGTCGTAG 59.026 55.000 0.00 0.00 0.00 3.51
806 807 6.210185 ACAAGGGGTCGTAGTACATATATTCC 59.790 42.308 0.38 0.00 0.00 3.01
811 820 6.015180 GGGTCGTAGTACATATATTCCCACAA 60.015 42.308 0.38 0.00 0.00 3.33
932 944 0.772384 ATCCTCTCGTACCTCCCGAT 59.228 55.000 0.00 0.00 33.27 4.18
948 960 0.462047 CGATAAAAGAGGCTGGCCGT 60.462 55.000 5.93 0.00 41.95 5.68
1030 1042 4.039357 AGCACGAGGTCCACGACG 62.039 66.667 16.05 7.07 32.65 5.12
1044 1059 1.298863 CGACGACAACGACCACAGT 60.299 57.895 0.00 0.00 42.66 3.55
1051 1066 1.145377 AACGACCACAGTTTCGCCT 59.855 52.632 0.00 0.00 38.88 5.52
1052 1067 1.157870 AACGACCACAGTTTCGCCTG 61.158 55.000 0.00 0.00 38.88 4.85
1060 1075 3.431725 GTTTCGCCTGGGAAGCCG 61.432 66.667 0.00 0.00 0.00 5.52
1193 1208 1.144057 GCTATGACTGGTGGGACGG 59.856 63.158 0.00 0.00 0.00 4.79
1284 1299 4.056125 CAGCACACCGAGCTCCGA 62.056 66.667 8.47 0.00 41.14 4.55
1338 1353 2.177531 GACGGCGACTGCTACGAA 59.822 61.111 16.62 0.00 42.25 3.85
1399 1414 1.068741 GCCACTCCTACCAATCCTACG 59.931 57.143 0.00 0.00 0.00 3.51
1405 1420 1.056660 CTACCAATCCTACGGCCCAT 58.943 55.000 0.00 0.00 0.00 4.00
1523 1538 0.878523 CCGTTCCTTGAGACGTTGCA 60.879 55.000 0.00 0.00 37.56 4.08
1537 1552 0.447801 GTTGCACCTAAGCACCATCG 59.552 55.000 0.00 0.00 45.61 3.84
1625 1640 2.278531 GTGCGGCCACACAAACAC 60.279 61.111 19.05 3.00 41.67 3.32
1627 1642 2.124060 TGCGGCCACACAAACACAT 61.124 52.632 2.24 0.00 0.00 3.21
1751 1773 3.893763 CGACGCCTCGGAGCTGAT 61.894 66.667 0.00 0.00 36.16 2.90
2104 2126 5.651530 TGTCTCTATTCATGAAACCGAGTC 58.348 41.667 13.09 14.68 0.00 3.36
2316 2362 1.566703 TGTGTTGTCTTTCCAAGGGGA 59.433 47.619 0.00 0.00 43.03 4.81
2440 2498 2.297597 CGGTGTAAATTTTTGGCCAGGA 59.702 45.455 5.11 0.00 0.00 3.86
2457 2518 3.432326 CCAGGACTTAGCTTGTGTATCCC 60.432 52.174 0.00 0.00 0.00 3.85
2484 2545 2.164219 CGATTTGGTGGCTGCTGTAATT 59.836 45.455 0.00 0.00 0.00 1.40
2595 2656 4.631813 ACGAAGATATTGAAGTGGCAAGAC 59.368 41.667 0.00 0.00 0.00 3.01
2601 2662 7.168219 AGATATTGAAGTGGCAAGACAAGTAA 58.832 34.615 0.00 0.00 0.00 2.24
2603 2664 3.476552 TGAAGTGGCAAGACAAGTAAGG 58.523 45.455 0.00 0.00 0.00 2.69
2605 2666 1.774856 AGTGGCAAGACAAGTAAGGGT 59.225 47.619 0.00 0.00 0.00 4.34
2632 2693 0.323816 TGTTGAAGGGCACACAACCA 60.324 50.000 20.57 10.17 41.82 3.67
2658 2719 4.694760 AAAATGGCAAAAAGGAGAGCTT 57.305 36.364 0.00 0.00 0.00 3.74
2659 2720 4.694760 AAATGGCAAAAAGGAGAGCTTT 57.305 36.364 0.00 0.00 0.00 3.51
2660 2721 4.694760 AATGGCAAAAAGGAGAGCTTTT 57.305 36.364 0.00 0.00 35.77 2.27
2661 2722 4.694760 ATGGCAAAAAGGAGAGCTTTTT 57.305 36.364 0.00 0.00 42.53 1.94
2689 2750 8.732746 TTGCATAGGTAGAAGAGTTTTATTCC 57.267 34.615 0.00 0.00 0.00 3.01
2690 2751 7.857456 TGCATAGGTAGAAGAGTTTTATTCCA 58.143 34.615 0.00 0.00 0.00 3.53
2691 2752 8.325787 TGCATAGGTAGAAGAGTTTTATTCCAA 58.674 33.333 0.00 0.00 0.00 3.53
2692 2753 9.174166 GCATAGGTAGAAGAGTTTTATTCCAAA 57.826 33.333 0.00 0.00 0.00 3.28
2694 2755 9.907229 ATAGGTAGAAGAGTTTTATTCCAAAGG 57.093 33.333 0.00 0.00 0.00 3.11
2695 2756 7.756614 AGGTAGAAGAGTTTTATTCCAAAGGT 58.243 34.615 0.00 0.00 0.00 3.50
2696 2757 8.887393 AGGTAGAAGAGTTTTATTCCAAAGGTA 58.113 33.333 0.00 0.00 0.00 3.08
2697 2758 9.682465 GGTAGAAGAGTTTTATTCCAAAGGTAT 57.318 33.333 0.00 0.00 0.00 2.73
2700 2761 9.907229 AGAAGAGTTTTATTCCAAAGGTATAGG 57.093 33.333 0.00 0.00 0.00 2.57
2701 2762 9.121658 GAAGAGTTTTATTCCAAAGGTATAGGG 57.878 37.037 0.00 0.00 0.00 3.53
2702 2763 8.171337 AGAGTTTTATTCCAAAGGTATAGGGT 57.829 34.615 0.00 0.00 0.00 4.34
2703 2764 8.621073 AGAGTTTTATTCCAAAGGTATAGGGTT 58.379 33.333 0.00 0.00 0.00 4.11
2704 2765 9.910267 GAGTTTTATTCCAAAGGTATAGGGTTA 57.090 33.333 0.00 0.00 0.00 2.85
2705 2766 9.690913 AGTTTTATTCCAAAGGTATAGGGTTAC 57.309 33.333 0.00 0.00 0.00 2.50
2706 2767 9.465199 GTTTTATTCCAAAGGTATAGGGTTACA 57.535 33.333 0.00 0.00 0.00 2.41
2709 2770 9.856162 TTATTCCAAAGGTATAGGGTTACAATC 57.144 33.333 0.00 0.00 0.00 2.67
2710 2771 6.894735 TCCAAAGGTATAGGGTTACAATCA 57.105 37.500 0.00 0.00 0.00 2.57
2711 2772 6.655930 TCCAAAGGTATAGGGTTACAATCAC 58.344 40.000 0.00 0.00 0.00 3.06
2712 2773 6.445786 TCCAAAGGTATAGGGTTACAATCACT 59.554 38.462 0.00 0.00 0.00 3.41
2713 2774 7.624478 TCCAAAGGTATAGGGTTACAATCACTA 59.376 37.037 0.00 0.00 0.00 2.74
2714 2775 7.931948 CCAAAGGTATAGGGTTACAATCACTAG 59.068 40.741 0.00 0.00 0.00 2.57
2715 2776 7.613551 AAGGTATAGGGTTACAATCACTAGG 57.386 40.000 0.00 0.00 0.00 3.02
2716 2777 5.543020 AGGTATAGGGTTACAATCACTAGGC 59.457 44.000 0.00 0.00 0.00 3.93
2717 2778 5.306160 GGTATAGGGTTACAATCACTAGGCA 59.694 44.000 0.00 0.00 0.00 4.75
2718 2779 3.914426 AGGGTTACAATCACTAGGCAG 57.086 47.619 0.00 0.00 0.00 4.85
2719 2780 2.505819 AGGGTTACAATCACTAGGCAGG 59.494 50.000 0.00 0.00 0.00 4.85
2720 2781 2.504175 GGGTTACAATCACTAGGCAGGA 59.496 50.000 0.00 0.00 0.00 3.86
2721 2782 3.432326 GGGTTACAATCACTAGGCAGGAG 60.432 52.174 0.00 0.00 0.00 3.69
2722 2783 3.432326 GGTTACAATCACTAGGCAGGAGG 60.432 52.174 0.00 0.00 0.00 4.30
2723 2784 1.958288 ACAATCACTAGGCAGGAGGT 58.042 50.000 0.00 0.00 0.00 3.85
2724 2785 1.834263 ACAATCACTAGGCAGGAGGTC 59.166 52.381 0.00 0.00 0.00 3.85
2725 2786 1.139853 CAATCACTAGGCAGGAGGTCC 59.860 57.143 0.00 0.00 0.00 4.46
2726 2787 0.399233 ATCACTAGGCAGGAGGTCCC 60.399 60.000 0.00 0.00 36.42 4.46
2727 2788 2.066999 CACTAGGCAGGAGGTCCCC 61.067 68.421 0.00 0.00 36.42 4.81
2728 2789 2.368594 CTAGGCAGGAGGTCCCCA 59.631 66.667 0.00 0.00 36.42 4.96
2729 2790 1.306997 CTAGGCAGGAGGTCCCCAA 60.307 63.158 0.00 0.00 36.42 4.12
2730 2791 1.615424 TAGGCAGGAGGTCCCCAAC 60.615 63.158 0.00 0.00 36.42 3.77
2731 2792 2.409984 TAGGCAGGAGGTCCCCAACA 62.410 60.000 0.00 0.00 36.42 3.33
2732 2793 2.034221 GCAGGAGGTCCCCAACAC 59.966 66.667 0.00 0.00 36.42 3.32
2733 2794 2.829384 GCAGGAGGTCCCCAACACA 61.829 63.158 0.00 0.00 36.42 3.72
2734 2795 1.073199 CAGGAGGTCCCCAACACAC 59.927 63.158 0.00 0.00 36.42 3.82
2735 2796 1.385347 AGGAGGTCCCCAACACACA 60.385 57.895 0.00 0.00 36.42 3.72
2736 2797 0.991355 AGGAGGTCCCCAACACACAA 60.991 55.000 0.00 0.00 36.42 3.33
2737 2798 0.112412 GGAGGTCCCCAACACACAAT 59.888 55.000 0.00 0.00 0.00 2.71
2738 2799 1.247567 GAGGTCCCCAACACACAATG 58.752 55.000 0.00 0.00 0.00 2.82
2739 2800 0.178964 AGGTCCCCAACACACAATGG 60.179 55.000 0.00 0.00 36.42 3.16
2740 2801 0.178975 GGTCCCCAACACACAATGGA 60.179 55.000 0.00 0.00 39.12 3.41
2741 2802 0.958822 GTCCCCAACACACAATGGAC 59.041 55.000 0.00 0.00 39.12 4.02
2742 2803 0.178975 TCCCCAACACACAATGGACC 60.179 55.000 0.00 0.00 39.12 4.46
2743 2804 0.178964 CCCCAACACACAATGGACCT 60.179 55.000 0.00 0.00 39.12 3.85
2744 2805 1.247567 CCCAACACACAATGGACCTC 58.752 55.000 0.00 0.00 39.12 3.85
2745 2806 0.874390 CCAACACACAATGGACCTCG 59.126 55.000 0.00 0.00 39.12 4.63
2746 2807 1.542328 CCAACACACAATGGACCTCGA 60.542 52.381 0.00 0.00 39.12 4.04
2747 2808 1.531149 CAACACACAATGGACCTCGAC 59.469 52.381 0.00 0.00 0.00 4.20
2748 2809 0.034896 ACACACAATGGACCTCGACC 59.965 55.000 0.00 0.00 0.00 4.79
2749 2810 0.673644 CACACAATGGACCTCGACCC 60.674 60.000 0.00 0.00 0.00 4.46
2750 2811 1.125093 ACACAATGGACCTCGACCCA 61.125 55.000 0.00 0.00 36.79 4.51
2751 2812 0.391661 CACAATGGACCTCGACCCAG 60.392 60.000 0.00 0.00 35.67 4.45
2752 2813 1.450312 CAATGGACCTCGACCCAGC 60.450 63.158 0.00 0.00 35.67 4.85
2753 2814 2.670148 AATGGACCTCGACCCAGCC 61.670 63.158 0.00 0.00 35.67 4.85
2754 2815 3.924013 ATGGACCTCGACCCAGCCA 62.924 63.158 0.00 0.00 35.67 4.75
2755 2816 3.083997 GGACCTCGACCCAGCCAT 61.084 66.667 0.00 0.00 0.00 4.40
2756 2817 1.760875 GGACCTCGACCCAGCCATA 60.761 63.158 0.00 0.00 0.00 2.74
2757 2818 1.442148 GACCTCGACCCAGCCATAC 59.558 63.158 0.00 0.00 0.00 2.39
2758 2819 1.305802 ACCTCGACCCAGCCATACA 60.306 57.895 0.00 0.00 0.00 2.29
2759 2820 1.330655 ACCTCGACCCAGCCATACAG 61.331 60.000 0.00 0.00 0.00 2.74
2760 2821 1.227380 CTCGACCCAGCCATACAGC 60.227 63.158 0.00 0.00 0.00 4.40
2761 2822 1.960040 CTCGACCCAGCCATACAGCA 61.960 60.000 0.00 0.00 34.23 4.41
2762 2823 1.522355 CGACCCAGCCATACAGCAG 60.522 63.158 0.00 0.00 34.23 4.24
2763 2824 1.604378 GACCCAGCCATACAGCAGT 59.396 57.895 0.00 0.00 34.23 4.40
2764 2825 0.830648 GACCCAGCCATACAGCAGTA 59.169 55.000 0.00 0.00 34.23 2.74
2765 2826 0.833287 ACCCAGCCATACAGCAGTAG 59.167 55.000 0.00 0.00 32.86 2.57
2766 2827 0.833287 CCCAGCCATACAGCAGTAGT 59.167 55.000 0.00 0.00 32.86 2.73
2767 2828 1.473965 CCCAGCCATACAGCAGTAGTG 60.474 57.143 0.00 0.00 32.86 2.74
2780 2841 3.392769 CAGTAGTGCTCTCTGTACGAC 57.607 52.381 0.00 0.00 37.22 4.34
3110 3201 2.005971 ACCGCAGATTAGTTTCGACC 57.994 50.000 0.00 0.00 0.00 4.79
3139 3236 4.439253 TGTGGATCTAGCTAGCTGAGTA 57.561 45.455 27.68 6.09 0.00 2.59
3263 3392 8.742554 ACTAATTTGCGGTTTCTTTCATAAAG 57.257 30.769 0.00 0.00 39.88 1.85
3265 3394 5.776173 TTTGCGGTTTCTTTCATAAAGGA 57.224 34.783 0.00 0.00 39.01 3.36
3266 3395 5.975693 TTGCGGTTTCTTTCATAAAGGAT 57.024 34.783 0.00 0.00 39.01 3.24
3267 3396 7.455641 TTTGCGGTTTCTTTCATAAAGGATA 57.544 32.000 0.00 0.00 39.01 2.59
3268 3397 7.639113 TTGCGGTTTCTTTCATAAAGGATAT 57.361 32.000 0.00 0.00 39.01 1.63
3269 3398 8.740123 TTGCGGTTTCTTTCATAAAGGATATA 57.260 30.769 0.00 0.00 39.01 0.86
3270 3399 8.918202 TGCGGTTTCTTTCATAAAGGATATAT 57.082 30.769 0.00 0.00 39.01 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.489785 CCTATAAACGCCTCACAATCGAC 59.510 47.826 0.00 0.00 0.00 4.20
1 2 3.491964 CCCTATAAACGCCTCACAATCGA 60.492 47.826 0.00 0.00 0.00 3.59
2 3 2.800544 CCCTATAAACGCCTCACAATCG 59.199 50.000 0.00 0.00 0.00 3.34
3 4 3.808174 GTCCCTATAAACGCCTCACAATC 59.192 47.826 0.00 0.00 0.00 2.67
6 7 2.463752 AGTCCCTATAAACGCCTCACA 58.536 47.619 0.00 0.00 0.00 3.58
7 8 3.455327 GAAGTCCCTATAAACGCCTCAC 58.545 50.000 0.00 0.00 0.00 3.51
8 9 2.100252 CGAAGTCCCTATAAACGCCTCA 59.900 50.000 0.00 0.00 0.00 3.86
9 10 2.100418 ACGAAGTCCCTATAAACGCCTC 59.900 50.000 0.00 0.00 29.74 4.70
10 11 2.105766 ACGAAGTCCCTATAAACGCCT 58.894 47.619 0.00 0.00 29.74 5.52
11 12 2.591571 ACGAAGTCCCTATAAACGCC 57.408 50.000 0.00 0.00 29.74 5.68
12 13 6.478016 AGATTTTACGAAGTCCCTATAAACGC 59.522 38.462 0.00 0.00 43.93 4.84
13 14 7.703621 TGAGATTTTACGAAGTCCCTATAAACG 59.296 37.037 0.00 0.00 43.93 3.60
14 15 8.937634 TGAGATTTTACGAAGTCCCTATAAAC 57.062 34.615 0.00 0.00 43.93 2.01
15 16 9.595823 CTTGAGATTTTACGAAGTCCCTATAAA 57.404 33.333 0.00 0.00 43.93 1.40
16 17 8.974238 TCTTGAGATTTTACGAAGTCCCTATAA 58.026 33.333 0.00 0.00 43.93 0.98
17 18 8.529424 TCTTGAGATTTTACGAAGTCCCTATA 57.471 34.615 0.00 0.00 43.93 1.31
18 19 7.419711 TCTTGAGATTTTACGAAGTCCCTAT 57.580 36.000 0.00 0.00 43.93 2.57
19 20 6.845758 TCTTGAGATTTTACGAAGTCCCTA 57.154 37.500 0.00 0.00 43.93 3.53
20 21 5.740290 TCTTGAGATTTTACGAAGTCCCT 57.260 39.130 0.00 0.00 43.93 4.20
21 22 5.875359 ACATCTTGAGATTTTACGAAGTCCC 59.125 40.000 0.00 0.00 35.39 4.46
22 23 6.969828 ACATCTTGAGATTTTACGAAGTCC 57.030 37.500 0.00 0.00 35.39 3.85
23 24 9.907576 CATAACATCTTGAGATTTTACGAAGTC 57.092 33.333 2.63 0.00 35.39 3.01
24 25 8.391106 GCATAACATCTTGAGATTTTACGAAGT 58.609 33.333 2.63 0.00 37.29 3.01
25 26 7.852945 GGCATAACATCTTGAGATTTTACGAAG 59.147 37.037 2.63 0.00 31.79 3.79
26 27 7.465379 CGGCATAACATCTTGAGATTTTACGAA 60.465 37.037 2.63 0.00 31.79 3.85
27 28 6.019075 CGGCATAACATCTTGAGATTTTACGA 60.019 38.462 2.63 0.00 31.79 3.43
28 29 6.129393 CGGCATAACATCTTGAGATTTTACG 58.871 40.000 2.63 0.00 31.79 3.18
29 30 6.430451 CCGGCATAACATCTTGAGATTTTAC 58.570 40.000 0.00 0.00 31.79 2.01
30 31 5.008613 GCCGGCATAACATCTTGAGATTTTA 59.991 40.000 24.80 2.98 33.04 1.52
31 32 4.202050 GCCGGCATAACATCTTGAGATTTT 60.202 41.667 24.80 0.00 31.21 1.82
32 33 3.316308 GCCGGCATAACATCTTGAGATTT 59.684 43.478 24.80 0.00 31.21 2.17
33 34 2.880890 GCCGGCATAACATCTTGAGATT 59.119 45.455 24.80 0.00 31.21 2.40
34 35 2.105477 AGCCGGCATAACATCTTGAGAT 59.895 45.455 31.54 0.00 34.56 2.75
35 36 1.486310 AGCCGGCATAACATCTTGAGA 59.514 47.619 31.54 0.00 0.00 3.27
36 37 1.959042 AGCCGGCATAACATCTTGAG 58.041 50.000 31.54 0.00 0.00 3.02
37 38 2.418368 AAGCCGGCATAACATCTTGA 57.582 45.000 31.54 0.00 0.00 3.02
38 39 4.516698 AGATTAAGCCGGCATAACATCTTG 59.483 41.667 31.54 0.00 0.00 3.02
39 40 4.718961 AGATTAAGCCGGCATAACATCTT 58.281 39.130 31.54 14.07 0.00 2.40
40 41 4.357918 AGATTAAGCCGGCATAACATCT 57.642 40.909 31.54 23.14 0.00 2.90
41 42 4.392138 GGTAGATTAAGCCGGCATAACATC 59.608 45.833 31.54 21.29 0.00 3.06
42 43 4.324267 GGTAGATTAAGCCGGCATAACAT 58.676 43.478 31.54 20.32 0.00 2.71
43 44 3.735591 GGTAGATTAAGCCGGCATAACA 58.264 45.455 31.54 13.20 0.00 2.41
44 45 2.735134 CGGTAGATTAAGCCGGCATAAC 59.265 50.000 31.54 19.98 41.60 1.89
45 46 2.629137 TCGGTAGATTAAGCCGGCATAA 59.371 45.455 31.54 27.88 44.97 1.90
46 47 2.241160 TCGGTAGATTAAGCCGGCATA 58.759 47.619 31.54 19.96 44.97 3.14
47 48 1.045407 TCGGTAGATTAAGCCGGCAT 58.955 50.000 31.54 21.32 44.97 4.40
48 49 0.825410 TTCGGTAGATTAAGCCGGCA 59.175 50.000 31.54 8.70 44.97 5.69
49 50 1.499049 CTTCGGTAGATTAAGCCGGC 58.501 55.000 21.89 21.89 44.97 6.13
50 51 1.411612 ACCTTCGGTAGATTAAGCCGG 59.588 52.381 0.00 0.00 44.97 6.13
51 52 2.470821 CACCTTCGGTAGATTAAGCCG 58.529 52.381 0.00 0.00 46.12 5.52
52 53 2.158943 AGCACCTTCGGTAGATTAAGCC 60.159 50.000 0.00 0.00 32.11 4.35
53 54 3.124560 GAGCACCTTCGGTAGATTAAGC 58.875 50.000 0.00 0.00 32.11 3.09
54 55 4.386867 TGAGCACCTTCGGTAGATTAAG 57.613 45.455 0.00 0.00 32.11 1.85
55 56 6.455647 CATATGAGCACCTTCGGTAGATTAA 58.544 40.000 0.00 0.00 32.11 1.40
56 57 5.047306 CCATATGAGCACCTTCGGTAGATTA 60.047 44.000 3.65 0.00 32.11 1.75
57 58 4.262635 CCATATGAGCACCTTCGGTAGATT 60.263 45.833 3.65 0.00 32.11 2.40
58 59 3.259374 CCATATGAGCACCTTCGGTAGAT 59.741 47.826 3.65 0.00 32.11 1.98
59 60 2.628178 CCATATGAGCACCTTCGGTAGA 59.372 50.000 3.65 0.00 32.11 2.59
60 61 2.289072 CCCATATGAGCACCTTCGGTAG 60.289 54.545 3.65 0.00 32.11 3.18
61 62 1.691976 CCCATATGAGCACCTTCGGTA 59.308 52.381 3.65 0.00 32.11 4.02
62 63 0.469917 CCCATATGAGCACCTTCGGT 59.530 55.000 3.65 0.00 35.62 4.69
63 64 0.469917 ACCCATATGAGCACCTTCGG 59.530 55.000 3.65 0.00 0.00 4.30
64 65 2.289072 CCTACCCATATGAGCACCTTCG 60.289 54.545 3.65 0.00 0.00 3.79
65 66 2.972713 TCCTACCCATATGAGCACCTTC 59.027 50.000 3.65 0.00 0.00 3.46
66 67 3.060479 TCCTACCCATATGAGCACCTT 57.940 47.619 3.65 0.00 0.00 3.50
67 68 2.795291 TCCTACCCATATGAGCACCT 57.205 50.000 3.65 0.00 0.00 4.00
68 69 2.639839 ACATCCTACCCATATGAGCACC 59.360 50.000 3.65 0.00 0.00 5.01
69 70 3.668447 CACATCCTACCCATATGAGCAC 58.332 50.000 3.65 0.00 0.00 4.40
70 71 2.038952 GCACATCCTACCCATATGAGCA 59.961 50.000 3.65 0.00 37.23 4.26
71 72 2.038952 TGCACATCCTACCCATATGAGC 59.961 50.000 3.65 0.00 37.61 4.26
72 73 4.259356 CATGCACATCCTACCCATATGAG 58.741 47.826 3.65 0.00 0.00 2.90
73 74 3.652387 ACATGCACATCCTACCCATATGA 59.348 43.478 3.65 0.00 0.00 2.15
74 75 4.005650 GACATGCACATCCTACCCATATG 58.994 47.826 0.00 0.00 0.00 1.78
75 76 3.009473 GGACATGCACATCCTACCCATAT 59.991 47.826 10.29 0.00 31.75 1.78
76 77 2.371841 GGACATGCACATCCTACCCATA 59.628 50.000 10.29 0.00 31.75 2.74
77 78 1.143684 GGACATGCACATCCTACCCAT 59.856 52.381 10.29 0.00 31.75 4.00
78 79 0.546122 GGACATGCACATCCTACCCA 59.454 55.000 10.29 0.00 31.75 4.51
79 80 0.546122 TGGACATGCACATCCTACCC 59.454 55.000 16.93 0.00 35.86 3.69
80 81 1.668419 GTGGACATGCACATCCTACC 58.332 55.000 16.93 4.16 35.86 3.18
81 82 1.290203 CGTGGACATGCACATCCTAC 58.710 55.000 16.93 12.50 35.86 3.18
82 83 0.901827 ACGTGGACATGCACATCCTA 59.098 50.000 16.93 3.65 35.86 2.94
83 84 0.036732 AACGTGGACATGCACATCCT 59.963 50.000 16.93 0.00 35.86 3.24
84 85 0.447801 GAACGTGGACATGCACATCC 59.552 55.000 10.59 10.59 35.37 3.51
85 86 1.155889 TGAACGTGGACATGCACATC 58.844 50.000 4.34 2.46 0.00 3.06
86 87 1.825090 ATGAACGTGGACATGCACAT 58.175 45.000 4.34 0.00 0.00 3.21
87 88 2.464157 TATGAACGTGGACATGCACA 57.536 45.000 4.34 0.00 0.00 4.57
88 89 4.355543 AATTATGAACGTGGACATGCAC 57.644 40.909 11.57 0.00 0.00 4.57
89 90 5.819901 TCATAATTATGAACGTGGACATGCA 59.180 36.000 22.95 0.00 39.58 3.96
90 91 6.017934 ACTCATAATTATGAACGTGGACATGC 60.018 38.462 24.61 0.00 41.72 4.06
91 92 7.011389 ACACTCATAATTATGAACGTGGACATG 59.989 37.037 31.22 19.34 41.72 3.21
92 93 7.047891 ACACTCATAATTATGAACGTGGACAT 58.952 34.615 31.22 18.77 41.72 3.06
93 94 6.403049 ACACTCATAATTATGAACGTGGACA 58.597 36.000 31.22 12.29 41.72 4.02
94 95 6.903883 ACACTCATAATTATGAACGTGGAC 57.096 37.500 31.22 0.00 41.72 4.02
95 96 7.170828 GCATACACTCATAATTATGAACGTGGA 59.829 37.037 31.22 28.03 41.72 4.02
96 97 7.171508 AGCATACACTCATAATTATGAACGTGG 59.828 37.037 31.22 23.58 41.72 4.94
97 98 8.076714 AGCATACACTCATAATTATGAACGTG 57.923 34.615 28.89 28.89 41.72 4.49
98 99 7.114953 CGAGCATACACTCATAATTATGAACGT 59.885 37.037 24.61 23.69 41.72 3.99
99 100 7.114953 ACGAGCATACACTCATAATTATGAACG 59.885 37.037 24.61 20.27 41.72 3.95
100 101 8.217115 CACGAGCATACACTCATAATTATGAAC 58.783 37.037 24.61 11.06 41.72 3.18
101 102 7.926018 ACACGAGCATACACTCATAATTATGAA 59.074 33.333 24.61 13.24 41.72 2.57
102 103 7.433680 ACACGAGCATACACTCATAATTATGA 58.566 34.615 23.46 23.46 40.19 2.15
103 104 7.643528 ACACGAGCATACACTCATAATTATG 57.356 36.000 17.82 17.82 36.42 1.90
104 105 9.358872 CATACACGAGCATACACTCATAATTAT 57.641 33.333 0.00 0.00 36.42 1.28
105 106 7.328493 GCATACACGAGCATACACTCATAATTA 59.672 37.037 0.00 0.00 36.42 1.40
106 107 6.146184 GCATACACGAGCATACACTCATAATT 59.854 38.462 0.00 0.00 36.42 1.40
107 108 5.635280 GCATACACGAGCATACACTCATAAT 59.365 40.000 0.00 0.00 36.42 1.28
108 109 4.982295 GCATACACGAGCATACACTCATAA 59.018 41.667 0.00 0.00 36.42 1.90
109 110 4.546570 GCATACACGAGCATACACTCATA 58.453 43.478 0.00 0.00 36.42 2.15
110 111 3.384668 GCATACACGAGCATACACTCAT 58.615 45.455 0.00 0.00 36.42 2.90
111 112 2.794631 CGCATACACGAGCATACACTCA 60.795 50.000 0.00 0.00 36.42 3.41
112 113 1.781429 CGCATACACGAGCATACACTC 59.219 52.381 0.00 0.00 34.06 3.51
113 114 1.404035 TCGCATACACGAGCATACACT 59.596 47.619 0.00 0.00 37.09 3.55
114 115 1.835121 TCGCATACACGAGCATACAC 58.165 50.000 0.00 0.00 37.09 2.90
122 123 3.200483 TCTAAGTAGCTCGCATACACGA 58.800 45.455 0.00 0.00 40.36 4.35
123 124 3.604065 TCTAAGTAGCTCGCATACACG 57.396 47.619 0.00 0.00 0.00 4.49
124 125 5.282510 ACAATCTAAGTAGCTCGCATACAC 58.717 41.667 0.00 0.00 0.00 2.90
125 126 5.515797 ACAATCTAAGTAGCTCGCATACA 57.484 39.130 0.00 0.00 0.00 2.29
126 127 5.857517 GGTACAATCTAAGTAGCTCGCATAC 59.142 44.000 0.00 0.00 37.09 2.39
127 128 5.768662 AGGTACAATCTAAGTAGCTCGCATA 59.231 40.000 0.00 0.00 44.40 3.14
128 129 4.585162 AGGTACAATCTAAGTAGCTCGCAT 59.415 41.667 0.00 0.00 44.40 4.73
129 130 3.952323 AGGTACAATCTAAGTAGCTCGCA 59.048 43.478 0.00 0.00 44.40 5.10
130 131 4.571372 AGGTACAATCTAAGTAGCTCGC 57.429 45.455 0.00 0.00 44.40 5.03
131 132 5.892568 ACAAGGTACAATCTAAGTAGCTCG 58.107 41.667 5.64 0.00 46.25 5.03
132 133 9.649167 TTTAACAAGGTACAATCTAAGTAGCTC 57.351 33.333 5.64 0.00 46.25 4.09
157 158 8.377799 TCCGGTCTCTTTACTTTATACCTTTTT 58.622 33.333 0.00 0.00 0.00 1.94
158 159 7.910584 TCCGGTCTCTTTACTTTATACCTTTT 58.089 34.615 0.00 0.00 0.00 2.27
159 160 7.486407 TCCGGTCTCTTTACTTTATACCTTT 57.514 36.000 0.00 0.00 0.00 3.11
160 161 7.486407 TTCCGGTCTCTTTACTTTATACCTT 57.514 36.000 0.00 0.00 0.00 3.50
161 162 7.486407 TTTCCGGTCTCTTTACTTTATACCT 57.514 36.000 0.00 0.00 0.00 3.08
162 163 8.446273 GTTTTTCCGGTCTCTTTACTTTATACC 58.554 37.037 0.00 0.00 0.00 2.73
163 164 8.992073 TGTTTTTCCGGTCTCTTTACTTTATAC 58.008 33.333 0.00 0.00 0.00 1.47
164 165 9.558396 TTGTTTTTCCGGTCTCTTTACTTTATA 57.442 29.630 0.00 0.00 0.00 0.98
165 166 8.454570 TTGTTTTTCCGGTCTCTTTACTTTAT 57.545 30.769 0.00 0.00 0.00 1.40
166 167 7.862512 TTGTTTTTCCGGTCTCTTTACTTTA 57.137 32.000 0.00 0.00 0.00 1.85
167 168 6.762702 TTGTTTTTCCGGTCTCTTTACTTT 57.237 33.333 0.00 0.00 0.00 2.66
168 169 6.762702 TTTGTTTTTCCGGTCTCTTTACTT 57.237 33.333 0.00 0.00 0.00 2.24
169 170 6.762702 TTTTGTTTTTCCGGTCTCTTTACT 57.237 33.333 0.00 0.00 0.00 2.24
170 171 9.518906 TTTATTTTGTTTTTCCGGTCTCTTTAC 57.481 29.630 0.00 0.00 0.00 2.01
172 173 9.093970 CTTTTATTTTGTTTTTCCGGTCTCTTT 57.906 29.630 0.00 0.00 0.00 2.52
173 174 8.471609 TCTTTTATTTTGTTTTTCCGGTCTCTT 58.528 29.630 0.00 0.00 0.00 2.85
174 175 8.002984 TCTTTTATTTTGTTTTTCCGGTCTCT 57.997 30.769 0.00 0.00 0.00 3.10
175 176 8.132995 TCTCTTTTATTTTGTTTTTCCGGTCTC 58.867 33.333 0.00 0.00 0.00 3.36
176 177 8.002984 TCTCTTTTATTTTGTTTTTCCGGTCT 57.997 30.769 0.00 0.00 0.00 3.85
177 178 8.637281 TTCTCTTTTATTTTGTTTTTCCGGTC 57.363 30.769 0.00 0.00 0.00 4.79
178 179 9.438228 TTTTCTCTTTTATTTTGTTTTTCCGGT 57.562 25.926 0.00 0.00 0.00 5.28
208 209 9.923143 GACAGTTAGGCTTTTTGGTTTATTATT 57.077 29.630 0.00 0.00 0.00 1.40
209 210 9.084533 TGACAGTTAGGCTTTTTGGTTTATTAT 57.915 29.630 0.00 0.00 0.00 1.28
210 211 8.466617 TGACAGTTAGGCTTTTTGGTTTATTA 57.533 30.769 0.00 0.00 0.00 0.98
211 212 7.354751 TGACAGTTAGGCTTTTTGGTTTATT 57.645 32.000 0.00 0.00 0.00 1.40
212 213 6.969993 TGACAGTTAGGCTTTTTGGTTTAT 57.030 33.333 0.00 0.00 0.00 1.40
213 214 6.777213 TTGACAGTTAGGCTTTTTGGTTTA 57.223 33.333 0.00 0.00 0.00 2.01
214 215 5.669164 TTGACAGTTAGGCTTTTTGGTTT 57.331 34.783 0.00 0.00 0.00 3.27
215 216 5.420739 TCTTTGACAGTTAGGCTTTTTGGTT 59.579 36.000 0.00 0.00 0.00 3.67
216 217 4.953579 TCTTTGACAGTTAGGCTTTTTGGT 59.046 37.500 0.00 0.00 0.00 3.67
217 218 5.514274 TCTTTGACAGTTAGGCTTTTTGG 57.486 39.130 0.00 0.00 0.00 3.28
218 219 7.826260 TTTTCTTTGACAGTTAGGCTTTTTG 57.174 32.000 0.00 0.00 0.00 2.44
219 220 8.311109 TCTTTTTCTTTGACAGTTAGGCTTTTT 58.689 29.630 0.00 0.00 0.00 1.94
220 221 7.836842 TCTTTTTCTTTGACAGTTAGGCTTTT 58.163 30.769 0.00 0.00 0.00 2.27
221 222 7.404671 TCTTTTTCTTTGACAGTTAGGCTTT 57.595 32.000 0.00 0.00 0.00 3.51
222 223 7.588497 ATCTTTTTCTTTGACAGTTAGGCTT 57.412 32.000 0.00 0.00 0.00 4.35
223 224 7.719633 TGTATCTTTTTCTTTGACAGTTAGGCT 59.280 33.333 0.00 0.00 0.00 4.58
224 225 7.871853 TGTATCTTTTTCTTTGACAGTTAGGC 58.128 34.615 0.00 0.00 0.00 3.93
225 226 9.884465 CTTGTATCTTTTTCTTTGACAGTTAGG 57.116 33.333 0.00 0.00 0.00 2.69
228 229 8.956426 TGTCTTGTATCTTTTTCTTTGACAGTT 58.044 29.630 0.00 0.00 0.00 3.16
229 230 8.398665 GTGTCTTGTATCTTTTTCTTTGACAGT 58.601 33.333 0.00 0.00 32.51 3.55
230 231 8.397906 TGTGTCTTGTATCTTTTTCTTTGACAG 58.602 33.333 0.00 0.00 32.51 3.51
231 232 8.181573 GTGTGTCTTGTATCTTTTTCTTTGACA 58.818 33.333 0.00 0.00 0.00 3.58
232 233 8.181573 TGTGTGTCTTGTATCTTTTTCTTTGAC 58.818 33.333 0.00 0.00 0.00 3.18
233 234 8.181573 GTGTGTGTCTTGTATCTTTTTCTTTGA 58.818 33.333 0.00 0.00 0.00 2.69
234 235 7.967854 TGTGTGTGTCTTGTATCTTTTTCTTTG 59.032 33.333 0.00 0.00 0.00 2.77
235 236 7.968405 GTGTGTGTGTCTTGTATCTTTTTCTTT 59.032 33.333 0.00 0.00 0.00 2.52
236 237 7.120579 TGTGTGTGTGTCTTGTATCTTTTTCTT 59.879 33.333 0.00 0.00 0.00 2.52
237 238 6.597672 TGTGTGTGTGTCTTGTATCTTTTTCT 59.402 34.615 0.00 0.00 0.00 2.52
238 239 6.781138 TGTGTGTGTGTCTTGTATCTTTTTC 58.219 36.000 0.00 0.00 0.00 2.29
239 240 6.751514 TGTGTGTGTGTCTTGTATCTTTTT 57.248 33.333 0.00 0.00 0.00 1.94
240 241 6.751514 TTGTGTGTGTGTCTTGTATCTTTT 57.248 33.333 0.00 0.00 0.00 2.27
241 242 6.751514 TTTGTGTGTGTGTCTTGTATCTTT 57.248 33.333 0.00 0.00 0.00 2.52
242 243 6.751514 TTTTGTGTGTGTGTCTTGTATCTT 57.248 33.333 0.00 0.00 0.00 2.40
243 244 6.751514 TTTTTGTGTGTGTGTCTTGTATCT 57.248 33.333 0.00 0.00 0.00 1.98
267 268 5.168647 TGTAGGATCGTGGGTATGTTTTT 57.831 39.130 0.00 0.00 0.00 1.94
268 269 4.829872 TGTAGGATCGTGGGTATGTTTT 57.170 40.909 0.00 0.00 0.00 2.43
269 270 4.829872 TTGTAGGATCGTGGGTATGTTT 57.170 40.909 0.00 0.00 0.00 2.83
270 271 4.654262 AGATTGTAGGATCGTGGGTATGTT 59.346 41.667 0.00 0.00 0.00 2.71
271 272 4.223953 AGATTGTAGGATCGTGGGTATGT 58.776 43.478 0.00 0.00 0.00 2.29
272 273 4.873746 AGATTGTAGGATCGTGGGTATG 57.126 45.455 0.00 0.00 0.00 2.39
273 274 5.357314 CGATAGATTGTAGGATCGTGGGTAT 59.643 44.000 0.00 0.00 37.11 2.73
274 275 4.698780 CGATAGATTGTAGGATCGTGGGTA 59.301 45.833 0.00 0.00 37.11 3.69
275 276 3.506455 CGATAGATTGTAGGATCGTGGGT 59.494 47.826 0.00 0.00 37.11 4.51
276 277 3.756963 TCGATAGATTGTAGGATCGTGGG 59.243 47.826 0.00 0.00 42.67 4.61
721 722 2.069273 ACAACGATTCCTGCTCTTTCG 58.931 47.619 0.00 0.00 35.99 3.46
777 778 2.174360 GTACTACGACCCCTTGTTCCT 58.826 52.381 0.00 0.00 0.00 3.36
794 795 7.062749 TCACCTCTTGTGGGAATATATGTAC 57.937 40.000 0.00 0.00 45.48 2.90
806 807 2.738846 CGTTGATTCTCACCTCTTGTGG 59.261 50.000 0.00 0.00 45.48 4.17
811 820 0.250513 GGCCGTTGATTCTCACCTCT 59.749 55.000 0.00 0.00 0.00 3.69
849 858 1.374252 ACACCGGTGATTCGTCAGC 60.374 57.895 40.21 0.00 35.04 4.26
850 859 4.988065 ACACCGGTGATTCGTCAG 57.012 55.556 40.21 11.64 0.00 3.51
932 944 1.674322 GCACGGCCAGCCTCTTTTA 60.674 57.895 2.24 0.00 0.00 1.52
1030 1042 0.042448 GCGAAACTGTGGTCGTTGTC 60.042 55.000 13.54 0.00 39.46 3.18
1051 1066 3.068881 CTTCTCCACGGCTTCCCA 58.931 61.111 0.00 0.00 0.00 4.37
1052 1067 2.436824 GCTTCTCCACGGCTTCCC 60.437 66.667 0.00 0.00 0.00 3.97
1060 1075 3.123620 CTGGCTGCGCTTCTCCAC 61.124 66.667 9.73 0.00 0.00 4.02
1193 1208 4.740822 ACCGGTTCAGCATGGCCC 62.741 66.667 0.00 0.00 36.16 5.80
1284 1299 1.474498 GGTTCCTTGACGTGGTGTTCT 60.474 52.381 0.00 0.00 0.00 3.01
1399 1414 1.590792 GCGTGTACGTAGATGGGCC 60.591 63.158 13.26 0.00 42.22 5.80
1405 1420 0.523072 GGTGGAAGCGTGTACGTAGA 59.477 55.000 6.27 0.00 42.22 2.59
1523 1538 1.972660 GCTCCCGATGGTGCTTAGGT 61.973 60.000 0.00 0.00 45.62 3.08
1625 1640 5.835819 TCAGGAAGAGGGTCTCTGTAATATG 59.164 44.000 0.00 0.00 40.28 1.78
1627 1642 5.202004 GTCAGGAAGAGGGTCTCTGTAATA 58.798 45.833 0.00 0.00 40.28 0.98
1751 1773 1.870055 GCCCCTGTACTCGAACGTCA 61.870 60.000 0.00 0.00 0.00 4.35
2080 2102 5.655488 ACTCGGTTTCATGAATAGAGACAG 58.345 41.667 27.42 16.75 31.93 3.51
2097 2119 0.263172 ATCTCCCCTCATGACTCGGT 59.737 55.000 0.00 0.00 0.00 4.69
2104 2126 1.123077 TCACGGAATCTCCCCTCATG 58.877 55.000 0.00 0.00 31.13 3.07
2142 2188 0.183492 TGCTTCCAAGACTTGCACCT 59.817 50.000 9.85 0.00 0.00 4.00
2407 2465 5.731957 AATTTACACCGGCTTTGGTTTAT 57.268 34.783 0.00 0.00 41.38 1.40
2419 2477 2.297597 TCCTGGCCAAAAATTTACACCG 59.702 45.455 7.01 0.00 0.00 4.94
2532 2593 6.269315 GTGACACATGTGGTAAACAATTCAA 58.731 36.000 28.64 3.73 43.61 2.69
2533 2594 5.504830 CGTGACACATGTGGTAAACAATTCA 60.505 40.000 28.64 16.61 43.61 2.57
2534 2595 4.909305 CGTGACACATGTGGTAAACAATTC 59.091 41.667 28.64 14.32 43.61 2.17
2535 2596 4.336993 ACGTGACACATGTGGTAAACAATT 59.663 37.500 28.64 5.13 43.61 2.32
2595 2656 7.504924 TTCAACATTGAAGTACCCTTACTTG 57.495 36.000 2.89 0.00 46.67 3.16
2627 2688 6.709846 TCCTTTTTGCCATTTTTCTATGGTTG 59.290 34.615 0.00 0.00 45.65 3.77
2632 2693 6.212187 AGCTCTCCTTTTTGCCATTTTTCTAT 59.788 34.615 0.00 0.00 0.00 1.98
2663 2724 9.174166 GGAATAAAACTCTTCTACCTATGCAAA 57.826 33.333 0.00 0.00 0.00 3.68
2664 2725 8.325787 TGGAATAAAACTCTTCTACCTATGCAA 58.674 33.333 0.00 0.00 0.00 4.08
2665 2726 7.857456 TGGAATAAAACTCTTCTACCTATGCA 58.143 34.615 0.00 0.00 0.00 3.96
2666 2727 8.732746 TTGGAATAAAACTCTTCTACCTATGC 57.267 34.615 0.00 0.00 0.00 3.14
2668 2729 9.907229 CCTTTGGAATAAAACTCTTCTACCTAT 57.093 33.333 0.00 0.00 0.00 2.57
2669 2730 8.887393 ACCTTTGGAATAAAACTCTTCTACCTA 58.113 33.333 0.00 0.00 0.00 3.08
2670 2731 7.756614 ACCTTTGGAATAAAACTCTTCTACCT 58.243 34.615 0.00 0.00 0.00 3.08
2671 2732 7.997773 ACCTTTGGAATAAAACTCTTCTACC 57.002 36.000 0.00 0.00 0.00 3.18
2674 2735 9.907229 CCTATACCTTTGGAATAAAACTCTTCT 57.093 33.333 0.00 0.00 0.00 2.85
2675 2736 9.121658 CCCTATACCTTTGGAATAAAACTCTTC 57.878 37.037 0.00 0.00 0.00 2.87
2676 2737 8.621073 ACCCTATACCTTTGGAATAAAACTCTT 58.379 33.333 0.00 0.00 0.00 2.85
2677 2738 8.171337 ACCCTATACCTTTGGAATAAAACTCT 57.829 34.615 0.00 0.00 0.00 3.24
2678 2739 8.818622 AACCCTATACCTTTGGAATAAAACTC 57.181 34.615 0.00 0.00 0.00 3.01
2679 2740 9.690913 GTAACCCTATACCTTTGGAATAAAACT 57.309 33.333 0.00 0.00 0.00 2.66
2680 2741 9.465199 TGTAACCCTATACCTTTGGAATAAAAC 57.535 33.333 0.00 0.00 0.00 2.43
2683 2744 9.856162 GATTGTAACCCTATACCTTTGGAATAA 57.144 33.333 0.00 0.00 0.00 1.40
2684 2745 9.005318 TGATTGTAACCCTATACCTTTGGAATA 57.995 33.333 0.00 0.00 0.00 1.75
2685 2746 7.778382 GTGATTGTAACCCTATACCTTTGGAAT 59.222 37.037 0.00 0.00 0.00 3.01
2686 2747 7.037153 AGTGATTGTAACCCTATACCTTTGGAA 60.037 37.037 0.00 0.00 0.00 3.53
2687 2748 6.445786 AGTGATTGTAACCCTATACCTTTGGA 59.554 38.462 0.00 0.00 0.00 3.53
2688 2749 6.659824 AGTGATTGTAACCCTATACCTTTGG 58.340 40.000 0.00 0.00 0.00 3.28
2689 2750 7.931948 CCTAGTGATTGTAACCCTATACCTTTG 59.068 40.741 0.00 0.00 0.00 2.77
2690 2751 7.419865 GCCTAGTGATTGTAACCCTATACCTTT 60.420 40.741 0.00 0.00 0.00 3.11
2691 2752 6.042897 GCCTAGTGATTGTAACCCTATACCTT 59.957 42.308 0.00 0.00 0.00 3.50
2692 2753 5.543020 GCCTAGTGATTGTAACCCTATACCT 59.457 44.000 0.00 0.00 0.00 3.08
2693 2754 5.306160 TGCCTAGTGATTGTAACCCTATACC 59.694 44.000 0.00 0.00 0.00 2.73
2694 2755 6.415206 TGCCTAGTGATTGTAACCCTATAC 57.585 41.667 0.00 0.00 0.00 1.47
2695 2756 5.542635 CCTGCCTAGTGATTGTAACCCTATA 59.457 44.000 0.00 0.00 0.00 1.31
2696 2757 4.348168 CCTGCCTAGTGATTGTAACCCTAT 59.652 45.833 0.00 0.00 0.00 2.57
2697 2758 3.709653 CCTGCCTAGTGATTGTAACCCTA 59.290 47.826 0.00 0.00 0.00 3.53
2698 2759 2.505819 CCTGCCTAGTGATTGTAACCCT 59.494 50.000 0.00 0.00 0.00 4.34
2699 2760 2.504175 TCCTGCCTAGTGATTGTAACCC 59.496 50.000 0.00 0.00 0.00 4.11
2700 2761 3.432326 CCTCCTGCCTAGTGATTGTAACC 60.432 52.174 0.00 0.00 0.00 2.85
2701 2762 3.197983 ACCTCCTGCCTAGTGATTGTAAC 59.802 47.826 0.00 0.00 0.00 2.50
2702 2763 3.450904 ACCTCCTGCCTAGTGATTGTAA 58.549 45.455 0.00 0.00 0.00 2.41
2703 2764 3.031736 GACCTCCTGCCTAGTGATTGTA 58.968 50.000 0.00 0.00 0.00 2.41
2704 2765 1.834263 GACCTCCTGCCTAGTGATTGT 59.166 52.381 0.00 0.00 0.00 2.71
2705 2766 1.139853 GGACCTCCTGCCTAGTGATTG 59.860 57.143 0.00 0.00 0.00 2.67
2706 2767 1.501582 GGACCTCCTGCCTAGTGATT 58.498 55.000 0.00 0.00 0.00 2.57
2707 2768 0.399233 GGGACCTCCTGCCTAGTGAT 60.399 60.000 0.00 0.00 35.95 3.06
2708 2769 1.001760 GGGACCTCCTGCCTAGTGA 59.998 63.158 0.00 0.00 35.95 3.41
2709 2770 3.635510 GGGACCTCCTGCCTAGTG 58.364 66.667 0.00 0.00 35.95 2.74
2722 2783 0.958822 GTCCATTGTGTGTTGGGGAC 59.041 55.000 0.00 0.00 38.15 4.46
2723 2784 0.178975 GGTCCATTGTGTGTTGGGGA 60.179 55.000 0.00 0.00 33.62 4.81
2724 2785 0.178964 AGGTCCATTGTGTGTTGGGG 60.179 55.000 0.00 0.00 33.62 4.96
2725 2786 1.247567 GAGGTCCATTGTGTGTTGGG 58.752 55.000 0.00 0.00 33.62 4.12
2726 2787 0.874390 CGAGGTCCATTGTGTGTTGG 59.126 55.000 0.00 0.00 0.00 3.77
2727 2788 1.531149 GTCGAGGTCCATTGTGTGTTG 59.469 52.381 0.00 0.00 0.00 3.33
2728 2789 1.542547 GGTCGAGGTCCATTGTGTGTT 60.543 52.381 0.00 0.00 0.00 3.32
2729 2790 0.034896 GGTCGAGGTCCATTGTGTGT 59.965 55.000 0.00 0.00 0.00 3.72
2730 2791 0.673644 GGGTCGAGGTCCATTGTGTG 60.674 60.000 0.00 0.00 0.00 3.82
2731 2792 1.125093 TGGGTCGAGGTCCATTGTGT 61.125 55.000 0.00 0.00 0.00 3.72
2732 2793 0.391661 CTGGGTCGAGGTCCATTGTG 60.392 60.000 3.00 0.00 31.95 3.33
2733 2794 1.983224 CTGGGTCGAGGTCCATTGT 59.017 57.895 3.00 0.00 31.95 2.71
2734 2795 1.450312 GCTGGGTCGAGGTCCATTG 60.450 63.158 3.00 0.00 31.95 2.82
2735 2796 2.670148 GGCTGGGTCGAGGTCCATT 61.670 63.158 3.00 0.00 31.95 3.16
2736 2797 3.083997 GGCTGGGTCGAGGTCCAT 61.084 66.667 3.00 0.00 31.95 3.41
2737 2798 2.523740 TATGGCTGGGTCGAGGTCCA 62.524 60.000 0.00 0.00 0.00 4.02
2738 2799 1.760875 TATGGCTGGGTCGAGGTCC 60.761 63.158 0.00 0.00 0.00 4.46
2739 2800 1.327690 TGTATGGCTGGGTCGAGGTC 61.328 60.000 0.00 0.00 0.00 3.85
2740 2801 1.305802 TGTATGGCTGGGTCGAGGT 60.306 57.895 0.00 0.00 0.00 3.85
2741 2802 1.443407 CTGTATGGCTGGGTCGAGG 59.557 63.158 0.00 0.00 0.00 4.63
2742 2803 1.227380 GCTGTATGGCTGGGTCGAG 60.227 63.158 0.00 0.00 0.00 4.04
2743 2804 1.960040 CTGCTGTATGGCTGGGTCGA 61.960 60.000 0.00 0.00 0.00 4.20
2744 2805 1.522355 CTGCTGTATGGCTGGGTCG 60.522 63.158 0.00 0.00 0.00 4.79
2745 2806 0.830648 TACTGCTGTATGGCTGGGTC 59.169 55.000 0.00 0.00 35.86 4.46
2746 2807 0.833287 CTACTGCTGTATGGCTGGGT 59.167 55.000 3.72 0.00 35.86 4.51
2747 2808 0.833287 ACTACTGCTGTATGGCTGGG 59.167 55.000 3.72 0.00 35.86 4.45
2748 2809 1.945387 CACTACTGCTGTATGGCTGG 58.055 55.000 3.72 0.00 35.86 4.85
2749 2810 1.293924 GCACTACTGCTGTATGGCTG 58.706 55.000 15.13 3.47 40.63 4.85
2750 2811 3.768633 GCACTACTGCTGTATGGCT 57.231 52.632 15.13 0.00 40.63 4.75
2759 2820 1.738350 TCGTACAGAGAGCACTACTGC 59.262 52.381 9.36 0.00 44.63 4.40
2760 2821 3.004171 AGTCGTACAGAGAGCACTACTG 58.996 50.000 8.33 8.33 37.62 2.74
2761 2822 3.337694 AGTCGTACAGAGAGCACTACT 57.662 47.619 0.00 0.00 0.00 2.57
2762 2823 5.752472 TGTATAGTCGTACAGAGAGCACTAC 59.248 44.000 0.00 0.00 31.33 2.73
2763 2824 5.752472 GTGTATAGTCGTACAGAGAGCACTA 59.248 44.000 0.00 0.00 35.40 2.74
2764 2825 4.571580 GTGTATAGTCGTACAGAGAGCACT 59.428 45.833 0.00 0.00 35.40 4.40
2765 2826 4.571580 AGTGTATAGTCGTACAGAGAGCAC 59.428 45.833 0.00 0.00 35.40 4.40
2766 2827 4.767478 AGTGTATAGTCGTACAGAGAGCA 58.233 43.478 0.00 0.00 35.40 4.26
2767 2828 5.984926 ACTAGTGTATAGTCGTACAGAGAGC 59.015 44.000 0.00 0.00 35.40 4.09
2768 2829 6.074195 GCACTAGTGTATAGTCGTACAGAGAG 60.074 46.154 23.44 0.00 35.40 3.20
2769 2830 5.752472 GCACTAGTGTATAGTCGTACAGAGA 59.248 44.000 23.44 0.00 35.40 3.10
2770 2831 5.522824 TGCACTAGTGTATAGTCGTACAGAG 59.477 44.000 23.44 0.00 35.40 3.35
2771 2832 5.422145 TGCACTAGTGTATAGTCGTACAGA 58.578 41.667 23.44 0.00 35.40 3.41
2772 2833 5.522824 TCTGCACTAGTGTATAGTCGTACAG 59.477 44.000 23.44 16.52 35.40 2.74
2773 2834 5.422145 TCTGCACTAGTGTATAGTCGTACA 58.578 41.667 23.44 8.28 32.43 2.90
2774 2835 5.980698 TCTGCACTAGTGTATAGTCGTAC 57.019 43.478 23.44 4.01 0.00 3.67
2775 2836 5.295292 GGTTCTGCACTAGTGTATAGTCGTA 59.705 44.000 23.44 0.00 0.00 3.43
2776 2837 4.096081 GGTTCTGCACTAGTGTATAGTCGT 59.904 45.833 23.44 0.00 0.00 4.34
2777 2838 4.599047 GGTTCTGCACTAGTGTATAGTCG 58.401 47.826 23.44 7.68 0.00 4.18
2778 2839 4.497674 CCGGTTCTGCACTAGTGTATAGTC 60.498 50.000 23.44 14.87 0.00 2.59
2779 2840 3.380637 CCGGTTCTGCACTAGTGTATAGT 59.619 47.826 23.44 0.00 0.00 2.12
2780 2841 3.243434 CCCGGTTCTGCACTAGTGTATAG 60.243 52.174 23.44 18.04 0.00 1.31
2967 3054 4.515944 CCACAAACATTTAGTACCGGTTGA 59.484 41.667 15.04 0.00 0.00 3.18
3082 3173 4.803098 ACTAATCTGCGGTACTTTCACT 57.197 40.909 0.00 0.00 0.00 3.41
3110 3201 1.001746 AGCTAGATCCACATGCATCCG 59.998 52.381 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.