Multiple sequence alignment - TraesCS2A01G075000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G075000 chr2A 100.000 2642 0 0 1 2642 33272019 33269378 0.000000e+00 4879.0
1 TraesCS2A01G075000 chr2A 97.368 38 1 0 2228 2265 82184318 82184355 6.100000e-07 65.8
2 TraesCS2A01G075000 chr2B 92.424 1254 69 16 782 2029 51228542 51229775 0.000000e+00 1766.0
3 TraesCS2A01G075000 chr2B 92.174 115 5 1 1 111 51228444 51228558 2.720000e-35 159.0
4 TraesCS2A01G075000 chr2D 97.790 905 11 3 873 1775 30980188 30979291 0.000000e+00 1552.0
5 TraesCS2A01G075000 chr2D 92.761 967 38 8 873 1838 30935692 30934757 0.000000e+00 1369.0
6 TraesCS2A01G075000 chr2D 96.899 258 5 2 1774 2029 30979137 30978881 1.880000e-116 429.0
7 TraesCS2A01G075000 chr2D 79.542 611 117 6 160 768 61450256 61450860 1.880000e-116 429.0
8 TraesCS2A01G075000 chr2D 97.525 202 4 1 2028 2229 30978843 30978643 7.000000e-91 344.0
9 TraesCS2A01G075000 chr2D 96.970 198 6 0 2370 2567 30978509 30978312 1.520000e-87 333.0
10 TraesCS2A01G075000 chr2D 91.617 167 14 0 2063 2229 30933222 30933056 5.690000e-57 231.0
11 TraesCS2A01G075000 chr2D 90.566 106 5 2 782 882 30980413 30980308 4.590000e-28 135.0
12 TraesCS2A01G075000 chr2D 96.825 63 1 1 2581 2642 30910998 30910936 1.290000e-18 104.0
13 TraesCS2A01G075000 chr2D 88.608 79 8 1 2424 2502 30911070 30910993 7.790000e-16 95.3
14 TraesCS2A01G075000 chr2D 100.000 35 0 0 2305 2339 30978544 30978510 6.100000e-07 65.8
15 TraesCS2A01G075000 chr2D 100.000 28 0 0 2281 2308 30978652 30978625 5.000000e-03 52.8
16 TraesCS2A01G075000 chr7D 90.449 712 58 9 934 1643 133327725 133327022 0.000000e+00 929.0
17 TraesCS2A01G075000 chr7A 89.888 712 62 9 934 1643 131937295 131936592 0.000000e+00 907.0
18 TraesCS2A01G075000 chr7A 80.929 624 114 5 162 783 533939125 533938505 3.060000e-134 488.0
19 TraesCS2A01G075000 chr7A 78.560 653 129 10 119 768 693482928 693483572 1.130000e-113 420.0
20 TraesCS2A01G075000 chr7B 88.235 714 70 11 934 1643 94630775 94630072 0.000000e+00 841.0
21 TraesCS2A01G075000 chr3D 81.692 650 107 8 123 768 452655546 452654905 5.010000e-147 531.0
22 TraesCS2A01G075000 chr3D 78.744 621 126 6 167 785 15891341 15890725 6.810000e-111 411.0
23 TraesCS2A01G075000 chr3D 79.407 573 111 6 175 743 481929817 481930386 5.300000e-107 398.0
24 TraesCS2A01G075000 chr6A 81.774 620 109 3 164 782 608656608 608655992 1.400000e-142 516.0
25 TraesCS2A01G075000 chr5D 79.088 636 114 14 158 787 276706402 276705780 1.130000e-113 420.0
26 TraesCS2A01G075000 chr6B 78.887 611 116 10 164 768 599080201 599079598 4.100000e-108 401.0
27 TraesCS2A01G075000 chr5A 88.679 106 12 0 2319 2424 706246658 706246553 2.130000e-26 130.0
28 TraesCS2A01G075000 chr5A 91.304 69 6 0 2355 2423 689931034 689930966 7.790000e-16 95.3
29 TraesCS2A01G075000 chr5A 93.878 49 1 1 2228 2276 687338686 687338640 3.650000e-09 73.1
30 TraesCS2A01G075000 chr5B 97.959 49 1 0 2228 2276 46743228 46743276 4.690000e-13 86.1
31 TraesCS2A01G075000 chr3A 97.959 49 1 0 2228 2276 25047274 25047322 4.690000e-13 86.1
32 TraesCS2A01G075000 chrUn 96.000 50 2 0 2228 2277 47797466 47797417 6.060000e-12 82.4
33 TraesCS2A01G075000 chr1A 92.453 53 2 2 2228 2279 568057886 568057835 1.010000e-09 75.0
34 TraesCS2A01G075000 chr1D 91.304 46 3 1 35 79 7586720 7586675 7.900000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G075000 chr2A 33269378 33272019 2641 True 4879.000000 4879 100.000000 1 2642 1 chr2A.!!$R1 2641
1 TraesCS2A01G075000 chr2B 51228444 51229775 1331 False 962.500000 1766 92.299000 1 2029 2 chr2B.!!$F1 2028
2 TraesCS2A01G075000 chr2D 30933056 30935692 2636 True 800.000000 1369 92.189000 873 2229 2 chr2D.!!$R2 1356
3 TraesCS2A01G075000 chr2D 61450256 61450860 604 False 429.000000 429 79.542000 160 768 1 chr2D.!!$F1 608
4 TraesCS2A01G075000 chr2D 30978312 30980413 2101 True 415.942857 1552 97.107143 782 2567 7 chr2D.!!$R3 1785
5 TraesCS2A01G075000 chr7D 133327022 133327725 703 True 929.000000 929 90.449000 934 1643 1 chr7D.!!$R1 709
6 TraesCS2A01G075000 chr7A 131936592 131937295 703 True 907.000000 907 89.888000 934 1643 1 chr7A.!!$R1 709
7 TraesCS2A01G075000 chr7A 533938505 533939125 620 True 488.000000 488 80.929000 162 783 1 chr7A.!!$R2 621
8 TraesCS2A01G075000 chr7A 693482928 693483572 644 False 420.000000 420 78.560000 119 768 1 chr7A.!!$F1 649
9 TraesCS2A01G075000 chr7B 94630072 94630775 703 True 841.000000 841 88.235000 934 1643 1 chr7B.!!$R1 709
10 TraesCS2A01G075000 chr3D 452654905 452655546 641 True 531.000000 531 81.692000 123 768 1 chr3D.!!$R2 645
11 TraesCS2A01G075000 chr3D 15890725 15891341 616 True 411.000000 411 78.744000 167 785 1 chr3D.!!$R1 618
12 TraesCS2A01G075000 chr3D 481929817 481930386 569 False 398.000000 398 79.407000 175 743 1 chr3D.!!$F1 568
13 TraesCS2A01G075000 chr6A 608655992 608656608 616 True 516.000000 516 81.774000 164 782 1 chr6A.!!$R1 618
14 TraesCS2A01G075000 chr5D 276705780 276706402 622 True 420.000000 420 79.088000 158 787 1 chr5D.!!$R1 629
15 TraesCS2A01G075000 chr6B 599079598 599080201 603 True 401.000000 401 78.887000 164 768 1 chr6B.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 598 0.037303 ACGAGGACTTCCCGACTGTA 59.963 55.0 11.61 0.0 40.87 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 4044 0.630673 TGATGATTGGGTCAAGGGGG 59.369 55.0 0.0 0.0 40.97 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.946655 ACAACAATATATCCGACATGTACAG 57.053 36.000 0.00 0.00 0.00 2.74
58 59 7.864379 GCATCAAATCGGTTTCATTAGATTCAT 59.136 33.333 0.00 0.00 32.79 2.57
135 136 1.840737 TCTCTCTTTCCTCCTCCACG 58.159 55.000 0.00 0.00 0.00 4.94
142 143 3.389983 TCTTTCCTCCTCCACGAGAAAAA 59.610 43.478 0.00 0.00 30.97 1.94
173 174 0.708802 TTACTCCTCCTCCTCCCGTT 59.291 55.000 0.00 0.00 0.00 4.44
287 290 1.804748 GGTTCTTGTTAGGTTCAGCGG 59.195 52.381 0.00 0.00 0.00 5.52
289 292 0.394938 TCTTGTTAGGTTCAGCGGCA 59.605 50.000 1.45 0.00 0.00 5.69
296 299 1.971167 GGTTCAGCGGCATGGTTGA 60.971 57.895 1.45 0.00 0.00 3.18
372 375 2.588877 CGTCCCGATGGTGCATCC 60.589 66.667 0.00 0.00 37.57 3.51
425 428 1.137086 CTGTCGGATCTCGTGGGATTT 59.863 52.381 0.00 0.00 40.32 2.17
429 432 3.005472 GTCGGATCTCGTGGGATTTGATA 59.995 47.826 0.00 0.00 40.32 2.15
435 438 1.134220 TCGTGGGATTTGATAGGTGCC 60.134 52.381 0.00 0.00 0.00 5.01
457 460 2.368875 AGTCTTCGGTGGATCTGTTTGT 59.631 45.455 0.00 0.00 0.00 2.83
463 466 2.418197 CGGTGGATCTGTTTGTATCCGT 60.418 50.000 0.00 0.00 43.96 4.69
486 490 0.658897 TCGTTTGTCTTCGTTTGGGC 59.341 50.000 0.00 0.00 0.00 5.36
494 500 4.063689 TGTCTTCGTTTGGGCGTTTATAA 58.936 39.130 0.00 0.00 0.00 0.98
559 565 4.767255 CTCTGGTGCGCTGGTCCC 62.767 72.222 9.73 1.10 0.00 4.46
561 567 4.641645 CTGGTGCGCTGGTCCCAA 62.642 66.667 9.73 0.00 0.00 4.12
565 571 3.565214 TGCGCTGGTCCCAAAGGA 61.565 61.111 9.73 0.00 41.08 3.36
567 573 1.678970 GCGCTGGTCCCAAAGGATT 60.679 57.895 0.00 0.00 46.41 3.01
577 583 3.127030 GTCCCAAAGGATTTTAGCACGAG 59.873 47.826 0.00 0.00 46.41 4.18
592 598 0.037303 ACGAGGACTTCCCGACTGTA 59.963 55.000 11.61 0.00 40.87 2.74
604 610 5.981088 TCCCGACTGTATACTACAACAAA 57.019 39.130 4.17 0.00 38.38 2.83
617 623 2.645802 ACAACAAAGTTTGCCCGACTA 58.354 42.857 15.59 0.00 0.00 2.59
630 636 0.970937 CCGACTACAGCAAGGGAGGA 60.971 60.000 0.00 0.00 0.00 3.71
664 670 4.070552 ACCTTCGGCTCGCTCCAC 62.071 66.667 0.00 0.00 0.00 4.02
666 672 2.415608 CCTTCGGCTCGCTCCACTA 61.416 63.158 0.00 0.00 0.00 2.74
667 673 1.736586 CTTCGGCTCGCTCCACTAT 59.263 57.895 0.00 0.00 0.00 2.12
687 693 2.336554 TTGTAGTCGTCGTTAGGTGC 57.663 50.000 0.00 0.00 0.00 5.01
694 701 1.582968 GTCGTTAGGTGCTCCACGA 59.417 57.895 14.28 14.28 38.96 4.35
701 708 2.741092 GTGCTCCACGAACCTGGA 59.259 61.111 0.00 0.00 38.05 3.86
743 751 7.716768 TTTATGTTCGTTGTACTGTCATGAA 57.283 32.000 0.00 0.00 0.00 2.57
744 752 5.591643 ATGTTCGTTGTACTGTCATGAAC 57.408 39.130 0.00 10.49 35.55 3.18
827 837 6.785191 TGTGAAACTGAAAGATGTTTGACTC 58.215 36.000 8.90 0.00 39.66 3.36
912 1058 0.754217 TACCGTCTATGCGCCTCCTT 60.754 55.000 4.18 0.00 0.00 3.36
913 1059 1.300233 CCGTCTATGCGCCTCCTTC 60.300 63.158 4.18 0.00 0.00 3.46
914 1060 1.300233 CGTCTATGCGCCTCCTTCC 60.300 63.158 4.18 0.00 0.00 3.46
915 1061 1.739338 CGTCTATGCGCCTCCTTCCT 61.739 60.000 4.18 0.00 0.00 3.36
1037 1187 2.179267 CGCTGCAGTGCTCGTCTA 59.821 61.111 15.44 0.00 0.00 2.59
1344 1494 0.246086 CCTCTGAGCTGCTCTTCGTT 59.754 55.000 28.04 0.00 0.00 3.85
1455 1605 2.074948 CCAGGGCCTGCTCCACTAT 61.075 63.158 28.51 0.00 0.00 2.12
1721 1871 1.674441 TGTCGGATTACGTGCCTAGAG 59.326 52.381 0.00 0.00 44.69 2.43
1808 2116 7.878644 GTGCATGCATCCATCATCTATATATCT 59.121 37.037 25.64 0.00 0.00 1.98
1968 2368 9.593134 AGAGCTTGTATACTTTATTTCTGTCAG 57.407 33.333 4.17 0.00 0.00 3.51
2024 2877 7.441157 TGGCGTACCTTATCTTTATTGAATGAG 59.559 37.037 0.00 0.00 36.63 2.90
2052 2944 4.079958 GGGAGGGTTTACTCAACACCATAT 60.080 45.833 0.00 0.00 40.05 1.78
2139 3757 5.591472 TGAACTCATCCATTATTTGAGCCAG 59.409 40.000 0.00 0.00 40.40 4.85
2175 3793 1.667724 GACATGCAGATGTGTACCAGC 59.332 52.381 0.00 0.00 43.22 4.85
2222 3840 4.074970 CCAAAGGCTACAAGTGATCAACT 58.925 43.478 0.00 0.00 42.60 3.16
2236 3854 7.206981 AGTGATCAACTTAACAATTCAGGTG 57.793 36.000 0.00 0.00 34.57 4.00
2237 3855 6.207417 AGTGATCAACTTAACAATTCAGGTGG 59.793 38.462 0.00 0.00 34.57 4.61
2238 3856 5.476599 TGATCAACTTAACAATTCAGGTGGG 59.523 40.000 0.00 0.00 0.00 4.61
2239 3857 3.572255 TCAACTTAACAATTCAGGTGGGC 59.428 43.478 0.00 0.00 0.00 5.36
2240 3858 3.237268 ACTTAACAATTCAGGTGGGCA 57.763 42.857 0.00 0.00 0.00 5.36
2241 3859 3.157087 ACTTAACAATTCAGGTGGGCAG 58.843 45.455 0.00 0.00 0.00 4.85
2242 3860 2.969821 TAACAATTCAGGTGGGCAGT 57.030 45.000 0.00 0.00 0.00 4.40
2243 3861 2.086610 AACAATTCAGGTGGGCAGTT 57.913 45.000 0.00 0.00 0.00 3.16
2244 3862 2.086610 ACAATTCAGGTGGGCAGTTT 57.913 45.000 0.00 0.00 0.00 2.66
2245 3863 2.397597 ACAATTCAGGTGGGCAGTTTT 58.602 42.857 0.00 0.00 0.00 2.43
2246 3864 2.771372 ACAATTCAGGTGGGCAGTTTTT 59.229 40.909 0.00 0.00 0.00 1.94
2247 3865 3.181466 ACAATTCAGGTGGGCAGTTTTTC 60.181 43.478 0.00 0.00 0.00 2.29
2248 3866 2.452600 TTCAGGTGGGCAGTTTTTCT 57.547 45.000 0.00 0.00 0.00 2.52
2249 3867 1.691196 TCAGGTGGGCAGTTTTTCTG 58.309 50.000 0.00 0.00 46.12 3.02
2257 3875 2.257353 CAGTTTTTCTGCCTCCCGG 58.743 57.895 0.00 0.00 37.36 5.73
2258 3876 0.537371 CAGTTTTTCTGCCTCCCGGT 60.537 55.000 0.00 0.00 37.36 5.28
2259 3877 0.537371 AGTTTTTCTGCCTCCCGGTG 60.537 55.000 0.00 0.00 0.00 4.94
2260 3878 0.536460 GTTTTTCTGCCTCCCGGTGA 60.536 55.000 0.00 0.00 0.00 4.02
2261 3879 0.404040 TTTTTCTGCCTCCCGGTGAT 59.596 50.000 0.00 0.00 0.00 3.06
2262 3880 0.322456 TTTTCTGCCTCCCGGTGATG 60.322 55.000 0.00 0.00 0.00 3.07
2263 3881 1.488705 TTTCTGCCTCCCGGTGATGT 61.489 55.000 0.00 0.00 0.00 3.06
2264 3882 1.488705 TTCTGCCTCCCGGTGATGTT 61.489 55.000 0.00 0.00 0.00 2.71
2265 3883 1.002134 CTGCCTCCCGGTGATGTTT 60.002 57.895 0.00 0.00 0.00 2.83
2266 3884 1.002624 TGCCTCCCGGTGATGTTTC 60.003 57.895 0.00 0.00 0.00 2.78
2267 3885 1.002624 GCCTCCCGGTGATGTTTCA 60.003 57.895 0.00 0.00 0.00 2.69
2268 3886 0.608035 GCCTCCCGGTGATGTTTCAA 60.608 55.000 0.00 0.00 32.48 2.69
2269 3887 1.904287 CCTCCCGGTGATGTTTCAAA 58.096 50.000 0.00 0.00 32.48 2.69
2270 3888 2.235016 CCTCCCGGTGATGTTTCAAAA 58.765 47.619 0.00 0.00 32.48 2.44
2271 3889 2.625790 CCTCCCGGTGATGTTTCAAAAA 59.374 45.455 0.00 0.00 32.48 1.94
2348 4050 4.439901 GGCCTCTCCCTCCCCCTT 62.440 72.222 0.00 0.00 0.00 3.95
2349 4051 3.093172 GCCTCTCCCTCCCCCTTG 61.093 72.222 0.00 0.00 0.00 3.61
2350 4052 2.787866 CCTCTCCCTCCCCCTTGA 59.212 66.667 0.00 0.00 0.00 3.02
2351 4053 1.690985 CCTCTCCCTCCCCCTTGAC 60.691 68.421 0.00 0.00 0.00 3.18
2352 4054 1.690985 CTCTCCCTCCCCCTTGACC 60.691 68.421 0.00 0.00 0.00 4.02
2353 4055 2.692741 CTCCCTCCCCCTTGACCC 60.693 72.222 0.00 0.00 0.00 4.46
2354 4056 3.547737 TCCCTCCCCCTTGACCCA 61.548 66.667 0.00 0.00 0.00 4.51
2355 4057 2.534272 CCCTCCCCCTTGACCCAA 60.534 66.667 0.00 0.00 0.00 4.12
2356 4058 1.935931 CCCTCCCCCTTGACCCAAT 60.936 63.158 0.00 0.00 0.00 3.16
2357 4059 1.615262 CCTCCCCCTTGACCCAATC 59.385 63.158 0.00 0.00 0.00 2.67
2358 4060 1.214305 CCTCCCCCTTGACCCAATCA 61.214 60.000 0.00 0.00 34.65 2.57
2359 4061 0.929244 CTCCCCCTTGACCCAATCAT 59.071 55.000 0.00 0.00 37.11 2.45
2360 4062 0.926293 TCCCCCTTGACCCAATCATC 59.074 55.000 0.00 0.00 37.11 2.92
2361 4063 0.630673 CCCCCTTGACCCAATCATCA 59.369 55.000 0.00 0.00 37.11 3.07
2362 4064 1.218704 CCCCCTTGACCCAATCATCAT 59.781 52.381 0.00 0.00 37.11 2.45
2363 4065 2.590821 CCCCTTGACCCAATCATCATC 58.409 52.381 0.00 0.00 37.11 2.92
2364 4066 2.176364 CCCCTTGACCCAATCATCATCT 59.824 50.000 0.00 0.00 37.11 2.90
2365 4067 3.220110 CCCTTGACCCAATCATCATCTG 58.780 50.000 0.00 0.00 37.11 2.90
2366 4068 2.621998 CCTTGACCCAATCATCATCTGC 59.378 50.000 0.00 0.00 37.11 4.26
2367 4069 2.353357 TGACCCAATCATCATCTGCC 57.647 50.000 0.00 0.00 29.99 4.85
2368 4070 1.565288 TGACCCAATCATCATCTGCCA 59.435 47.619 0.00 0.00 29.99 4.92
2379 4081 5.932455 TCATCATCTGCCAAGTCATAATGA 58.068 37.500 0.00 0.00 0.00 2.57
2480 4182 0.833287 GGAGTGCTGGCAGATAGGAA 59.167 55.000 20.86 0.00 0.00 3.36
2497 4199 1.895131 GGAACATTGTGGTGAGGCAAT 59.105 47.619 0.00 0.00 35.91 3.56
2531 4233 1.231221 TTGTTGCCCATACACACGTC 58.769 50.000 0.00 0.00 0.00 4.34
2544 4246 0.171679 ACACGTCGAATGCGGATGTA 59.828 50.000 0.00 0.00 38.28 2.29
2564 4266 1.203100 AGTTTGCAATGCCCTTCTCCT 60.203 47.619 1.53 0.00 0.00 3.69
2567 4269 0.991146 TGCAATGCCCTTCTCCTACA 59.009 50.000 1.53 0.00 0.00 2.74
2568 4270 1.354031 TGCAATGCCCTTCTCCTACAA 59.646 47.619 1.53 0.00 0.00 2.41
2569 4271 2.019984 GCAATGCCCTTCTCCTACAAG 58.980 52.381 0.00 0.00 0.00 3.16
2570 4272 2.019984 CAATGCCCTTCTCCTACAAGC 58.980 52.381 0.00 0.00 0.00 4.01
2571 4273 1.289160 ATGCCCTTCTCCTACAAGCA 58.711 50.000 0.00 0.00 0.00 3.91
2572 4274 1.289160 TGCCCTTCTCCTACAAGCAT 58.711 50.000 0.00 0.00 0.00 3.79
2573 4275 2.477245 TGCCCTTCTCCTACAAGCATA 58.523 47.619 0.00 0.00 0.00 3.14
2574 4276 2.843730 TGCCCTTCTCCTACAAGCATAA 59.156 45.455 0.00 0.00 0.00 1.90
2575 4277 3.118261 TGCCCTTCTCCTACAAGCATAAG 60.118 47.826 0.00 0.00 0.00 1.73
2576 4278 3.471680 CCCTTCTCCTACAAGCATAAGC 58.528 50.000 0.00 0.00 42.56 3.09
2577 4279 3.118261 CCCTTCTCCTACAAGCATAAGCA 60.118 47.826 0.00 0.00 45.49 3.91
2578 4280 4.125703 CCTTCTCCTACAAGCATAAGCAG 58.874 47.826 0.00 0.00 45.49 4.24
2579 4281 3.827008 TCTCCTACAAGCATAAGCAGG 57.173 47.619 0.00 0.00 45.49 4.85
2580 4282 3.374764 TCTCCTACAAGCATAAGCAGGA 58.625 45.455 0.00 0.00 45.49 3.86
2581 4283 3.726607 CTCCTACAAGCATAAGCAGGAG 58.273 50.000 9.00 9.00 45.32 3.69
2582 4284 2.435805 TCCTACAAGCATAAGCAGGAGG 59.564 50.000 7.21 7.21 45.47 4.30
2583 4285 2.216898 CTACAAGCATAAGCAGGAGGC 58.783 52.381 0.00 0.00 45.49 4.70
2596 4298 3.973657 GCAGGAGGCATCAATTATGTTG 58.026 45.455 0.00 0.00 43.97 3.33
2597 4299 3.633525 GCAGGAGGCATCAATTATGTTGA 59.366 43.478 0.00 0.00 43.97 3.18
2598 4300 4.098349 GCAGGAGGCATCAATTATGTTGAA 59.902 41.667 0.00 0.00 43.97 2.69
2599 4301 5.221382 GCAGGAGGCATCAATTATGTTGAAT 60.221 40.000 0.00 0.00 43.97 2.57
2600 4302 6.016024 GCAGGAGGCATCAATTATGTTGAATA 60.016 38.462 0.00 0.00 43.97 1.75
2601 4303 7.470424 GCAGGAGGCATCAATTATGTTGAATAA 60.470 37.037 0.00 0.00 43.97 1.40
2602 4304 7.864379 CAGGAGGCATCAATTATGTTGAATAAC 59.136 37.037 0.00 0.00 37.93 1.89
2614 4316 4.939271 TGTTGAATAACAGTCTCACACGA 58.061 39.130 0.00 0.00 41.66 4.35
2615 4317 4.743151 TGTTGAATAACAGTCTCACACGAC 59.257 41.667 0.00 0.00 41.66 4.34
2616 4318 3.561503 TGAATAACAGTCTCACACGACG 58.438 45.455 0.00 0.00 38.90 5.12
2617 4319 1.978542 ATAACAGTCTCACACGACGC 58.021 50.000 0.00 0.00 38.90 5.19
2618 4320 0.949397 TAACAGTCTCACACGACGCT 59.051 50.000 0.00 0.00 38.90 5.07
2619 4321 0.317938 AACAGTCTCACACGACGCTC 60.318 55.000 0.00 0.00 38.90 5.03
2620 4322 1.442857 CAGTCTCACACGACGCTCC 60.443 63.158 0.00 0.00 38.90 4.70
2621 4323 1.897137 AGTCTCACACGACGCTCCA 60.897 57.895 0.00 0.00 38.90 3.86
2622 4324 1.442857 GTCTCACACGACGCTCCAG 60.443 63.158 0.00 0.00 0.00 3.86
2623 4325 2.126307 CTCACACGACGCTCCAGG 60.126 66.667 0.00 0.00 0.00 4.45
2624 4326 3.633094 CTCACACGACGCTCCAGGG 62.633 68.421 0.00 0.00 0.00 4.45
2625 4327 3.991051 CACACGACGCTCCAGGGT 61.991 66.667 0.00 0.00 44.25 4.34
2635 4337 4.073293 ACGCTCCAGGGTCTAAATTATG 57.927 45.455 0.00 0.00 36.39 1.90
2636 4338 3.454812 ACGCTCCAGGGTCTAAATTATGT 59.545 43.478 0.00 0.00 36.39 2.29
2637 4339 4.652421 ACGCTCCAGGGTCTAAATTATGTA 59.348 41.667 0.00 0.00 36.39 2.29
2638 4340 4.989168 CGCTCCAGGGTCTAAATTATGTAC 59.011 45.833 0.00 0.00 0.00 2.90
2639 4341 5.306394 GCTCCAGGGTCTAAATTATGTACC 58.694 45.833 0.00 0.00 0.00 3.34
2640 4342 5.163237 GCTCCAGGGTCTAAATTATGTACCA 60.163 44.000 0.00 0.00 31.58 3.25
2641 4343 6.465894 GCTCCAGGGTCTAAATTATGTACCAT 60.466 42.308 0.00 0.00 31.58 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.195646 TGAATCTAATGAAACCGATTTGATGC 58.804 34.615 0.00 0.00 29.41 3.91
98 99 8.723942 AAGAGAGAACGCAATAGAAACATTAT 57.276 30.769 0.00 0.00 0.00 1.28
99 100 8.547967 AAAGAGAGAACGCAATAGAAACATTA 57.452 30.769 0.00 0.00 0.00 1.90
100 101 7.361286 GGAAAGAGAGAACGCAATAGAAACATT 60.361 37.037 0.00 0.00 0.00 2.71
101 102 6.092807 GGAAAGAGAGAACGCAATAGAAACAT 59.907 38.462 0.00 0.00 0.00 2.71
102 103 5.408604 GGAAAGAGAGAACGCAATAGAAACA 59.591 40.000 0.00 0.00 0.00 2.83
103 104 5.639931 AGGAAAGAGAGAACGCAATAGAAAC 59.360 40.000 0.00 0.00 0.00 2.78
104 105 5.794894 AGGAAAGAGAGAACGCAATAGAAA 58.205 37.500 0.00 0.00 0.00 2.52
105 106 5.407407 AGGAAAGAGAGAACGCAATAGAA 57.593 39.130 0.00 0.00 0.00 2.10
106 107 4.142138 GGAGGAAAGAGAGAACGCAATAGA 60.142 45.833 0.00 0.00 0.00 1.98
107 108 4.116238 GGAGGAAAGAGAGAACGCAATAG 58.884 47.826 0.00 0.00 0.00 1.73
108 109 3.769844 AGGAGGAAAGAGAGAACGCAATA 59.230 43.478 0.00 0.00 0.00 1.90
109 110 2.569404 AGGAGGAAAGAGAGAACGCAAT 59.431 45.455 0.00 0.00 0.00 3.56
110 111 1.971357 AGGAGGAAAGAGAGAACGCAA 59.029 47.619 0.00 0.00 0.00 4.85
111 112 1.546476 GAGGAGGAAAGAGAGAACGCA 59.454 52.381 0.00 0.00 0.00 5.24
112 113 1.134936 GGAGGAGGAAAGAGAGAACGC 60.135 57.143 0.00 0.00 0.00 4.84
113 114 2.094442 GTGGAGGAGGAAAGAGAGAACG 60.094 54.545 0.00 0.00 0.00 3.95
114 115 2.094442 CGTGGAGGAGGAAAGAGAGAAC 60.094 54.545 0.00 0.00 0.00 3.01
115 116 2.171840 CGTGGAGGAGGAAAGAGAGAA 58.828 52.381 0.00 0.00 0.00 2.87
116 117 1.354705 TCGTGGAGGAGGAAAGAGAGA 59.645 52.381 0.00 0.00 0.00 3.10
117 118 1.748493 CTCGTGGAGGAGGAAAGAGAG 59.252 57.143 0.00 0.00 0.00 3.20
121 122 3.402628 TTTTCTCGTGGAGGAGGAAAG 57.597 47.619 0.00 0.00 36.76 2.62
142 143 5.045505 GGAGGAGGAGTAAAGGTTGAGATTT 60.046 44.000 0.00 0.00 0.00 2.17
144 145 4.034410 GGAGGAGGAGTAAAGGTTGAGAT 58.966 47.826 0.00 0.00 0.00 2.75
148 149 2.502130 GGAGGAGGAGGAGTAAAGGTTG 59.498 54.545 0.00 0.00 0.00 3.77
151 152 1.796017 GGGAGGAGGAGGAGTAAAGG 58.204 60.000 0.00 0.00 0.00 3.11
152 153 1.342175 ACGGGAGGAGGAGGAGTAAAG 60.342 57.143 0.00 0.00 0.00 1.85
154 155 0.708802 AACGGGAGGAGGAGGAGTAA 59.291 55.000 0.00 0.00 0.00 2.24
155 156 0.033405 CAACGGGAGGAGGAGGAGTA 60.033 60.000 0.00 0.00 0.00 2.59
156 157 1.305381 CAACGGGAGGAGGAGGAGT 60.305 63.158 0.00 0.00 0.00 3.85
157 158 2.060980 CCAACGGGAGGAGGAGGAG 61.061 68.421 0.00 0.00 35.59 3.69
189 190 2.861101 GCCATCGGAGATGAGGCGA 61.861 63.158 11.22 0.00 45.12 5.54
267 270 1.804748 CCGCTGAACCTAACAAGAACC 59.195 52.381 0.00 0.00 0.00 3.62
287 290 0.314935 CCACACAACCTCAACCATGC 59.685 55.000 0.00 0.00 0.00 4.06
289 292 1.172180 CGCCACACAACCTCAACCAT 61.172 55.000 0.00 0.00 0.00 3.55
313 316 2.777692 TCATTCCTACCAAGGGACATCC 59.222 50.000 0.00 0.00 43.84 3.51
372 375 0.799917 CATGCACTCCGACGACTCTG 60.800 60.000 0.00 0.00 0.00 3.35
375 378 1.080501 CACATGCACTCCGACGACT 60.081 57.895 0.00 0.00 0.00 4.18
425 428 0.824109 CCGAAGACTGGCACCTATCA 59.176 55.000 0.00 0.00 0.00 2.15
429 432 2.743718 CACCGAAGACTGGCACCT 59.256 61.111 0.00 0.00 0.00 4.00
435 438 2.738846 CAAACAGATCCACCGAAGACTG 59.261 50.000 0.00 0.00 0.00 3.51
463 466 3.064271 CCCAAACGAAGACAAACGAAGAA 59.936 43.478 0.00 0.00 0.00 2.52
486 490 9.855021 AAATTGGAAGGATCAAACTTATAAACG 57.145 29.630 0.00 0.00 0.00 3.60
494 500 6.238648 AGTCGTAAATTGGAAGGATCAAACT 58.761 36.000 0.00 0.00 0.00 2.66
559 565 4.003648 AGTCCTCGTGCTAAAATCCTTTG 58.996 43.478 0.00 0.00 0.00 2.77
561 567 3.983044 AGTCCTCGTGCTAAAATCCTT 57.017 42.857 0.00 0.00 0.00 3.36
565 571 2.677037 CGGGAAGTCCTCGTGCTAAAAT 60.677 50.000 0.00 0.00 35.95 1.82
567 573 0.245539 CGGGAAGTCCTCGTGCTAAA 59.754 55.000 0.00 0.00 35.95 1.85
577 583 4.827304 GTAGTATACAGTCGGGAAGTCC 57.173 50.000 5.50 0.00 42.43 3.85
592 598 4.214758 GTCGGGCAAACTTTGTTGTAGTAT 59.785 41.667 3.48 0.00 0.00 2.12
604 610 0.107831 TTGCTGTAGTCGGGCAAACT 59.892 50.000 0.00 0.00 41.96 2.66
617 623 1.992277 ATCGCTCCTCCCTTGCTGT 60.992 57.895 0.00 0.00 0.00 4.40
630 636 4.512961 TGCGCCGTCATCATCGCT 62.513 61.111 4.18 0.00 46.73 4.93
664 670 4.498323 GCACCTAACGACGACTACAAATAG 59.502 45.833 0.00 0.00 34.25 1.73
666 672 3.057033 AGCACCTAACGACGACTACAAAT 60.057 43.478 0.00 0.00 0.00 2.32
667 673 2.294233 AGCACCTAACGACGACTACAAA 59.706 45.455 0.00 0.00 0.00 2.83
717 724 8.144155 TCATGACAGTACAACGAACATAAAAA 57.856 30.769 0.00 0.00 0.00 1.94
728 735 5.633601 TCATCTTCGTTCATGACAGTACAAC 59.366 40.000 0.00 0.00 0.00 3.32
850 860 4.003648 AGTACTTCCTTCGCTCCAAAATG 58.996 43.478 0.00 0.00 0.00 2.32
912 1058 3.908103 GGCCATAAGGTGATAAGGTAGGA 59.092 47.826 0.00 0.00 37.19 2.94
913 1059 3.910627 AGGCCATAAGGTGATAAGGTAGG 59.089 47.826 5.01 0.00 37.19 3.18
914 1060 6.875972 ATAGGCCATAAGGTGATAAGGTAG 57.124 41.667 5.01 0.00 37.19 3.18
1025 1175 1.202087 CGAGGAAGTAGACGAGCACTG 60.202 57.143 0.00 0.00 0.00 3.66
1026 1176 1.088306 CGAGGAAGTAGACGAGCACT 58.912 55.000 0.00 0.00 0.00 4.40
1027 1177 0.803740 ACGAGGAAGTAGACGAGCAC 59.196 55.000 0.00 0.00 0.00 4.40
1037 1187 1.536662 AAGGGCAGGACGAGGAAGT 60.537 57.895 0.00 0.00 0.00 3.01
1344 1494 1.760875 GAGGATGGTGCCCTCGGTA 60.761 63.158 0.00 0.00 40.58 4.02
1455 1605 2.048597 CTGCCGCCGTTGTACTGA 60.049 61.111 0.00 0.00 0.00 3.41
1721 1871 1.597663 CCATTTCTCGCGGTGTTATCC 59.402 52.381 6.13 0.00 0.00 2.59
1808 2116 2.487762 GTTGCACGAATCTCCAATTGGA 59.512 45.455 25.53 25.53 43.08 3.53
1992 2392 3.492102 AGATAAGGTACGCCAATGCAT 57.508 42.857 0.00 0.00 37.32 3.96
2024 2877 0.696501 TGAGTAAACCCTCCCTTGCC 59.303 55.000 0.00 0.00 0.00 4.52
2052 2944 7.392418 TGTAGAGAGTAGTTAGTGCAGAGTTA 58.608 38.462 0.00 0.00 0.00 2.24
2139 3757 0.895100 TGTCAATGGAAGCACCCTGC 60.895 55.000 0.00 0.00 45.46 4.85
2222 3840 3.237268 ACTGCCCACCTGAATTGTTAA 57.763 42.857 0.00 0.00 0.00 2.01
2229 3847 2.031120 CAGAAAAACTGCCCACCTGAA 58.969 47.619 0.00 0.00 39.86 3.02
2230 3848 1.691196 CAGAAAAACTGCCCACCTGA 58.309 50.000 0.00 0.00 39.86 3.86
2278 3896 9.847224 AGGTCTTTGATTCTCTTGTTAAGTTAA 57.153 29.630 0.00 0.00 0.00 2.01
2279 3897 9.847224 AAGGTCTTTGATTCTCTTGTTAAGTTA 57.153 29.630 0.00 0.00 0.00 2.24
2339 4041 1.214305 TGATTGGGTCAAGGGGGAGG 61.214 60.000 0.00 0.00 32.78 4.30
2340 4042 0.929244 ATGATTGGGTCAAGGGGGAG 59.071 55.000 0.00 0.00 40.97 4.30
2341 4043 0.926293 GATGATTGGGTCAAGGGGGA 59.074 55.000 0.00 0.00 40.97 4.81
2342 4044 0.630673 TGATGATTGGGTCAAGGGGG 59.369 55.000 0.00 0.00 40.97 5.40
2343 4045 2.176364 AGATGATGATTGGGTCAAGGGG 59.824 50.000 0.00 0.00 40.97 4.79
2344 4046 3.220110 CAGATGATGATTGGGTCAAGGG 58.780 50.000 0.00 0.00 40.97 3.95
2345 4047 2.621998 GCAGATGATGATTGGGTCAAGG 59.378 50.000 0.00 0.00 40.97 3.61
2346 4048 2.621998 GGCAGATGATGATTGGGTCAAG 59.378 50.000 0.00 0.00 40.97 3.02
2347 4049 2.025131 TGGCAGATGATGATTGGGTCAA 60.025 45.455 0.00 0.00 40.97 3.18
2348 4050 1.565288 TGGCAGATGATGATTGGGTCA 59.435 47.619 0.00 0.00 42.06 4.02
2349 4051 2.353357 TGGCAGATGATGATTGGGTC 57.647 50.000 0.00 0.00 0.00 4.46
2350 4052 2.024655 ACTTGGCAGATGATGATTGGGT 60.025 45.455 0.00 0.00 0.00 4.51
2351 4053 2.621998 GACTTGGCAGATGATGATTGGG 59.378 50.000 0.00 0.00 0.00 4.12
2352 4054 3.284617 TGACTTGGCAGATGATGATTGG 58.715 45.455 0.00 0.00 0.00 3.16
2353 4055 6.628919 TTATGACTTGGCAGATGATGATTG 57.371 37.500 0.00 0.00 0.00 2.67
2354 4056 7.002276 TCATTATGACTTGGCAGATGATGATT 58.998 34.615 0.00 0.00 0.00 2.57
2355 4057 6.430308 GTCATTATGACTTGGCAGATGATGAT 59.570 38.462 17.19 0.00 43.73 2.45
2356 4058 5.761726 GTCATTATGACTTGGCAGATGATGA 59.238 40.000 17.19 0.00 43.73 2.92
2357 4059 5.048921 GGTCATTATGACTTGGCAGATGATG 60.049 44.000 22.48 0.00 46.19 3.07
2358 4060 5.068636 GGTCATTATGACTTGGCAGATGAT 58.931 41.667 22.48 0.00 46.19 2.45
2359 4061 4.454678 GGTCATTATGACTTGGCAGATGA 58.545 43.478 22.48 2.47 46.19 2.92
2360 4062 3.567164 GGGTCATTATGACTTGGCAGATG 59.433 47.826 22.48 0.00 46.19 2.90
2361 4063 3.461085 AGGGTCATTATGACTTGGCAGAT 59.539 43.478 22.48 0.72 46.19 2.90
2362 4064 2.846206 AGGGTCATTATGACTTGGCAGA 59.154 45.455 22.48 0.00 46.19 4.26
2363 4065 2.947652 CAGGGTCATTATGACTTGGCAG 59.052 50.000 22.48 6.00 46.19 4.85
2364 4066 2.308570 ACAGGGTCATTATGACTTGGCA 59.691 45.455 22.48 0.00 46.19 4.92
2365 4067 3.004752 ACAGGGTCATTATGACTTGGC 57.995 47.619 22.48 7.84 46.19 4.52
2366 4068 6.127730 GGTTTTACAGGGTCATTATGACTTGG 60.128 42.308 22.48 14.62 46.19 3.61
2367 4069 6.659242 AGGTTTTACAGGGTCATTATGACTTG 59.341 38.462 22.48 21.16 46.19 3.16
2368 4070 6.790319 AGGTTTTACAGGGTCATTATGACTT 58.210 36.000 22.48 10.41 46.19 3.01
2379 4081 3.583966 TCATTACGGAGGTTTTACAGGGT 59.416 43.478 0.00 0.00 0.00 4.34
2497 4199 4.340019 CAAACGCGGTGGCATGCA 62.340 61.111 21.36 2.54 39.92 3.96
2531 4233 1.396648 TGCAAACTACATCCGCATTCG 59.603 47.619 0.00 0.00 0.00 3.34
2544 4246 1.203100 AGGAGAAGGGCATTGCAAACT 60.203 47.619 11.39 2.49 0.00 2.66
2564 4266 1.559219 TGCCTCCTGCTTATGCTTGTA 59.441 47.619 1.96 0.00 42.00 2.41
2567 4269 1.213678 TGATGCCTCCTGCTTATGCTT 59.786 47.619 1.96 0.00 42.00 3.91
2568 4270 0.841961 TGATGCCTCCTGCTTATGCT 59.158 50.000 1.96 0.00 42.00 3.79
2569 4271 1.683943 TTGATGCCTCCTGCTTATGC 58.316 50.000 0.00 0.00 42.00 3.14
2570 4272 5.475909 ACATAATTGATGCCTCCTGCTTATG 59.524 40.000 0.00 0.00 39.39 1.90
2571 4273 5.638133 ACATAATTGATGCCTCCTGCTTAT 58.362 37.500 0.00 0.00 39.39 1.73
2572 4274 5.052693 ACATAATTGATGCCTCCTGCTTA 57.947 39.130 0.00 0.00 39.39 3.09
2573 4275 3.907221 ACATAATTGATGCCTCCTGCTT 58.093 40.909 0.00 0.00 39.39 3.91
2574 4276 3.589951 ACATAATTGATGCCTCCTGCT 57.410 42.857 0.00 0.00 39.39 4.24
2575 4277 3.633525 TCAACATAATTGATGCCTCCTGC 59.366 43.478 0.00 0.00 39.39 4.85
2576 4278 5.840243 TTCAACATAATTGATGCCTCCTG 57.160 39.130 0.00 0.00 39.39 3.86
2577 4279 7.560991 TGTTATTCAACATAATTGATGCCTCCT 59.439 33.333 0.00 0.00 39.75 3.69
2578 4280 7.715657 TGTTATTCAACATAATTGATGCCTCC 58.284 34.615 0.00 0.00 39.75 4.30
2579 4281 8.408601 ACTGTTATTCAACATAATTGATGCCTC 58.591 33.333 0.00 0.00 43.58 4.70
2580 4282 8.297470 ACTGTTATTCAACATAATTGATGCCT 57.703 30.769 0.00 0.00 43.58 4.75
2581 4283 8.408601 AGACTGTTATTCAACATAATTGATGCC 58.591 33.333 0.00 0.00 43.58 4.40
2582 4284 9.443283 GAGACTGTTATTCAACATAATTGATGC 57.557 33.333 0.00 0.00 43.58 3.91
2585 4287 9.500785 TGTGAGACTGTTATTCAACATAATTGA 57.499 29.630 0.00 0.00 43.58 2.57
2586 4288 9.546909 GTGTGAGACTGTTATTCAACATAATTG 57.453 33.333 0.00 0.00 43.58 2.32
2587 4289 8.443160 CGTGTGAGACTGTTATTCAACATAATT 58.557 33.333 0.00 0.00 43.58 1.40
2588 4290 7.817478 TCGTGTGAGACTGTTATTCAACATAAT 59.183 33.333 0.00 0.00 43.58 1.28
2589 4291 7.115805 GTCGTGTGAGACTGTTATTCAACATAA 59.884 37.037 0.00 0.00 43.58 1.90
2590 4292 6.584942 GTCGTGTGAGACTGTTATTCAACATA 59.415 38.462 0.00 0.00 43.58 2.29
2591 4293 5.405571 GTCGTGTGAGACTGTTATTCAACAT 59.594 40.000 0.00 0.00 43.58 2.71
2592 4294 4.743151 GTCGTGTGAGACTGTTATTCAACA 59.257 41.667 0.00 0.00 42.39 3.33
2593 4295 4.143597 CGTCGTGTGAGACTGTTATTCAAC 60.144 45.833 0.00 0.00 38.90 3.18
2594 4296 3.978855 CGTCGTGTGAGACTGTTATTCAA 59.021 43.478 0.00 0.00 38.90 2.69
2595 4297 3.561503 CGTCGTGTGAGACTGTTATTCA 58.438 45.455 0.00 0.00 38.90 2.57
2596 4298 2.341760 GCGTCGTGTGAGACTGTTATTC 59.658 50.000 0.00 0.00 38.90 1.75
2597 4299 2.030185 AGCGTCGTGTGAGACTGTTATT 60.030 45.455 0.00 0.00 38.90 1.40
2598 4300 1.540267 AGCGTCGTGTGAGACTGTTAT 59.460 47.619 0.00 0.00 38.90 1.89
2599 4301 0.949397 AGCGTCGTGTGAGACTGTTA 59.051 50.000 0.00 0.00 38.90 2.41
2600 4302 0.317938 GAGCGTCGTGTGAGACTGTT 60.318 55.000 0.00 0.00 38.90 3.16
2601 4303 1.283181 GAGCGTCGTGTGAGACTGT 59.717 57.895 0.00 0.00 38.90 3.55
2602 4304 1.442857 GGAGCGTCGTGTGAGACTG 60.443 63.158 0.00 0.00 38.90 3.51
2603 4305 1.857318 CTGGAGCGTCGTGTGAGACT 61.857 60.000 0.00 0.00 38.90 3.24
2604 4306 1.442857 CTGGAGCGTCGTGTGAGAC 60.443 63.158 0.00 0.00 37.76 3.36
2605 4307 2.626780 CCTGGAGCGTCGTGTGAGA 61.627 63.158 0.00 0.00 0.00 3.27
2606 4308 2.126307 CCTGGAGCGTCGTGTGAG 60.126 66.667 0.00 0.00 0.00 3.51
2607 4309 3.680786 CCCTGGAGCGTCGTGTGA 61.681 66.667 0.00 0.00 0.00 3.58
2608 4310 3.916392 GACCCTGGAGCGTCGTGTG 62.916 68.421 0.00 0.00 0.00 3.82
2609 4311 2.759641 TAGACCCTGGAGCGTCGTGT 62.760 60.000 0.00 0.00 34.10 4.49
2610 4312 1.592400 TTAGACCCTGGAGCGTCGTG 61.592 60.000 0.00 0.00 34.10 4.35
2611 4313 0.896940 TTTAGACCCTGGAGCGTCGT 60.897 55.000 0.00 0.00 34.10 4.34
2612 4314 0.460311 ATTTAGACCCTGGAGCGTCG 59.540 55.000 0.00 0.00 34.10 5.12
2613 4315 2.693267 AATTTAGACCCTGGAGCGTC 57.307 50.000 0.00 0.00 0.00 5.19
2614 4316 3.454812 ACATAATTTAGACCCTGGAGCGT 59.545 43.478 0.00 0.00 0.00 5.07
2615 4317 4.073293 ACATAATTTAGACCCTGGAGCG 57.927 45.455 0.00 0.00 0.00 5.03
2616 4318 5.163237 TGGTACATAATTTAGACCCTGGAGC 60.163 44.000 0.00 0.00 0.00 4.70
2617 4319 6.494666 TGGTACATAATTTAGACCCTGGAG 57.505 41.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.