Multiple sequence alignment - TraesCS2A01G074800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G074800 chr2A 100.000 3509 0 0 1 3509 33053328 33056836 0.000000e+00 6481.0
1 TraesCS2A01G074800 chr2A 93.426 289 18 1 70 358 513641375 513641088 9.000000e-116 427.0
2 TraesCS2A01G074800 chr2A 92.123 292 22 1 67 358 146749327 146749617 9.070000e-111 411.0
3 TraesCS2A01G074800 chr2A 88.043 92 11 0 3192 3283 338281024 338281115 3.700000e-20 110.0
4 TraesCS2A01G074800 chr2D 95.805 2026 46 10 856 2872 30787390 30789385 0.000000e+00 3234.0
5 TraesCS2A01G074800 chr2D 87.196 453 20 14 382 820 30786958 30787386 6.810000e-132 481.0
6 TraesCS2A01G074800 chr2D 87.031 293 24 3 2908 3191 30791003 30791290 5.650000e-83 318.0
7 TraesCS2A01G074800 chr2D 94.521 73 1 1 1 70 30786873 30786945 3.700000e-20 110.0
8 TraesCS2A01G074800 chr6B 81.392 1451 250 17 1043 2486 26591162 26592599 0.000000e+00 1166.0
9 TraesCS2A01G074800 chr6B 79.904 1453 268 20 1043 2486 26634747 26633310 0.000000e+00 1044.0
10 TraesCS2A01G074800 chr6B 79.876 1456 263 25 1043 2486 26597730 26596293 0.000000e+00 1038.0
11 TraesCS2A01G074800 chr6A 80.910 1451 257 17 1043 2486 15782577 15781140 0.000000e+00 1127.0
12 TraesCS2A01G074800 chr6A 79.892 1477 267 24 1022 2485 15727866 15729325 0.000000e+00 1055.0
13 TraesCS2A01G074800 chr6A 78.997 1476 284 22 1022 2486 15747637 15749097 0.000000e+00 985.0
14 TraesCS2A01G074800 chr6A 94.138 290 17 0 68 357 575491233 575490944 3.210000e-120 442.0
15 TraesCS2A01G074800 chr6A 93.103 290 20 0 69 358 602489824 602490113 3.240000e-115 425.0
16 TraesCS2A01G074800 chr6D 80.565 1451 262 17 1043 2486 14618753 14620190 0.000000e+00 1099.0
17 TraesCS2A01G074800 chr6D 80.000 1480 262 27 1022 2486 14680753 14679293 0.000000e+00 1062.0
18 TraesCS2A01G074800 chr1A 93.426 289 19 0 70 358 28616258 28615970 2.500000e-116 429.0
19 TraesCS2A01G074800 chr1A 90.000 100 8 2 3093 3191 56621 56523 1.020000e-25 128.0
20 TraesCS2A01G074800 chr1A 87.736 106 11 2 3087 3191 289838 289942 4.760000e-24 122.0
21 TraesCS2A01G074800 chr1A 89.247 93 10 0 3191 3283 506548616 506548524 2.210000e-22 117.0
22 TraesCS2A01G074800 chr7A 93.127 291 18 2 68 358 477309824 477310112 3.240000e-115 425.0
23 TraesCS2A01G074800 chr7A 88.298 94 11 0 3190 3283 233339203 233339110 2.860000e-21 113.0
24 TraesCS2A01G074800 chr3A 93.403 288 18 1 71 358 57085072 57085358 3.240000e-115 425.0
25 TraesCS2A01G074800 chr3A 95.980 199 8 0 3311 3509 750494598 750494400 1.210000e-84 324.0
26 TraesCS2A01G074800 chr5A 93.103 290 19 1 70 358 598668460 598668171 1.160000e-114 424.0
27 TraesCS2A01G074800 chr5A 95.238 189 9 0 3321 3509 467735699 467735887 2.050000e-77 300.0
28 TraesCS2A01G074800 chr5A 94.709 189 10 0 3321 3509 470178585 470178773 9.530000e-76 294.0
29 TraesCS2A01G074800 chr4A 91.694 301 24 1 59 358 472196042 472195742 1.950000e-112 416.0
30 TraesCS2A01G074800 chr4A 96.296 189 7 0 3321 3509 733536758 733536570 9.460000e-81 311.0
31 TraesCS2A01G074800 chr4A 93.651 189 12 0 3321 3509 124810816 124811004 2.060000e-72 283.0
32 TraesCS2A01G074800 chr4A 93.651 189 11 1 3321 3509 584677963 584677776 7.420000e-72 281.0
33 TraesCS2A01G074800 chr4A 88.421 95 11 0 3189 3283 613610087 613609993 7.960000e-22 115.0
34 TraesCS2A01G074800 chr4A 100.000 28 0 0 3285 3312 103342904 103342931 6.000000e-03 52.8
35 TraesCS2A01G074800 chr2B 94.180 189 11 0 3321 3509 796273597 796273409 4.430000e-74 289.0
36 TraesCS2A01G074800 chr7D 93.651 189 12 0 3321 3509 613864022 613863834 2.060000e-72 283.0
37 TraesCS2A01G074800 chr5D 93.651 189 12 0 3321 3509 457668714 457668902 2.060000e-72 283.0
38 TraesCS2A01G074800 chr7B 89.362 94 10 0 3190 3283 176697419 176697512 6.150000e-23 119.0
39 TraesCS2A01G074800 chr1B 89.247 93 10 0 3191 3283 553148034 553147942 2.210000e-22 117.0
40 TraesCS2A01G074800 chr3B 85.981 107 13 2 3177 3283 440078849 440078745 2.860000e-21 113.0
41 TraesCS2A01G074800 chr4D 87.234 94 11 1 3191 3283 446116498 446116405 4.790000e-19 106.0
42 TraesCS2A01G074800 chr1D 85.149 101 14 1 3184 3283 410503215 410503115 6.200000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G074800 chr2A 33053328 33056836 3508 False 6481.00 6481 100.00000 1 3509 1 chr2A.!!$F1 3508
1 TraesCS2A01G074800 chr2D 30786873 30791290 4417 False 1035.75 3234 91.13825 1 3191 4 chr2D.!!$F1 3190
2 TraesCS2A01G074800 chr6B 26591162 26592599 1437 False 1166.00 1166 81.39200 1043 2486 1 chr6B.!!$F1 1443
3 TraesCS2A01G074800 chr6B 26633310 26634747 1437 True 1044.00 1044 79.90400 1043 2486 1 chr6B.!!$R2 1443
4 TraesCS2A01G074800 chr6B 26596293 26597730 1437 True 1038.00 1038 79.87600 1043 2486 1 chr6B.!!$R1 1443
5 TraesCS2A01G074800 chr6A 15781140 15782577 1437 True 1127.00 1127 80.91000 1043 2486 1 chr6A.!!$R1 1443
6 TraesCS2A01G074800 chr6A 15727866 15729325 1459 False 1055.00 1055 79.89200 1022 2485 1 chr6A.!!$F1 1463
7 TraesCS2A01G074800 chr6A 15747637 15749097 1460 False 985.00 985 78.99700 1022 2486 1 chr6A.!!$F2 1464
8 TraesCS2A01G074800 chr6D 14618753 14620190 1437 False 1099.00 1099 80.56500 1043 2486 1 chr6D.!!$F1 1443
9 TraesCS2A01G074800 chr6D 14679293 14680753 1460 True 1062.00 1062 80.00000 1022 2486 1 chr6D.!!$R1 1464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 870 0.036010 CTGAGCTGTTTCCGTGGGAT 60.036 55.0 0.0 0.0 0.0 3.85 F
902 918 0.110056 GATGTCAACGCTTGCCTGTG 60.110 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 1799 0.099082 CCGTAGAGGAGCACGAAGAC 59.901 60.0 0.0 0.0 45.00 3.01 R
2874 2899 0.107654 AGCCTCATAGCAACGTTCCC 60.108 55.0 0.0 0.0 34.23 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 47 6.012658 TGTTCATAGTGGAGTCATTTTTGC 57.987 37.500 0.00 0.00 0.00 3.68
79 83 1.908483 CCGAGCTAAGGCCTCCTTT 59.092 57.895 5.23 0.00 41.69 3.11
80 84 0.462759 CCGAGCTAAGGCCTCCTTTG 60.463 60.000 5.23 3.23 41.69 2.77
81 85 0.462759 CGAGCTAAGGCCTCCTTTGG 60.463 60.000 5.23 0.00 41.69 3.28
82 86 0.621082 GAGCTAAGGCCTCCTTTGGT 59.379 55.000 5.23 10.54 46.07 3.67
83 87 1.004862 GAGCTAAGGCCTCCTTTGGTT 59.995 52.381 5.23 0.00 44.22 3.67
84 88 1.004862 AGCTAAGGCCTCCTTTGGTTC 59.995 52.381 5.23 0.00 42.36 3.62
85 89 1.271926 GCTAAGGCCTCCTTTGGTTCA 60.272 52.381 5.23 0.00 41.69 3.18
86 90 2.621668 GCTAAGGCCTCCTTTGGTTCAT 60.622 50.000 5.23 0.00 41.69 2.57
87 91 3.371595 GCTAAGGCCTCCTTTGGTTCATA 60.372 47.826 5.23 0.00 41.69 2.15
88 92 3.372440 AAGGCCTCCTTTGGTTCATAG 57.628 47.619 5.23 0.00 41.69 2.23
89 93 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
90 94 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
91 95 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
92 96 3.394606 GGCCTCCTTTGGTTCATAGGATA 59.605 47.826 0.00 0.00 39.94 2.59
93 97 4.141251 GGCCTCCTTTGGTTCATAGGATAA 60.141 45.833 0.00 0.00 39.94 1.75
94 98 5.445964 GCCTCCTTTGGTTCATAGGATAAA 58.554 41.667 7.38 0.00 39.94 1.40
95 99 5.891551 GCCTCCTTTGGTTCATAGGATAAAA 59.108 40.000 7.38 0.00 39.94 1.52
96 100 6.379988 GCCTCCTTTGGTTCATAGGATAAAAA 59.620 38.462 7.38 0.00 39.94 1.94
97 101 7.069950 GCCTCCTTTGGTTCATAGGATAAAAAT 59.930 37.037 7.38 0.00 39.94 1.82
98 102 8.416329 CCTCCTTTGGTTCATAGGATAAAAATG 58.584 37.037 7.38 0.00 39.94 2.32
99 103 8.893563 TCCTTTGGTTCATAGGATAAAAATGT 57.106 30.769 3.54 0.00 36.84 2.71
100 104 9.320295 TCCTTTGGTTCATAGGATAAAAATGTT 57.680 29.630 3.54 0.00 36.84 2.71
101 105 9.369904 CCTTTGGTTCATAGGATAAAAATGTTG 57.630 33.333 0.00 0.00 35.14 3.33
102 106 9.927668 CTTTGGTTCATAGGATAAAAATGTTGT 57.072 29.630 0.00 0.00 0.00 3.32
105 109 9.184523 TGGTTCATAGGATAAAAATGTTGTAGG 57.815 33.333 0.00 0.00 0.00 3.18
106 110 9.403583 GGTTCATAGGATAAAAATGTTGTAGGA 57.596 33.333 0.00 0.00 0.00 2.94
129 133 9.844257 AGGAATAGGAAAATCATAGAAAGTGAG 57.156 33.333 0.00 0.00 0.00 3.51
130 134 9.838339 GGAATAGGAAAATCATAGAAAGTGAGA 57.162 33.333 0.00 0.00 0.00 3.27
134 138 8.729805 AGGAAAATCATAGAAAGTGAGATGAC 57.270 34.615 0.00 0.00 31.41 3.06
135 139 8.324306 AGGAAAATCATAGAAAGTGAGATGACA 58.676 33.333 0.00 0.00 31.41 3.58
136 140 9.118300 GGAAAATCATAGAAAGTGAGATGACAT 57.882 33.333 0.00 0.00 31.41 3.06
137 141 9.932699 GAAAATCATAGAAAGTGAGATGACATG 57.067 33.333 0.00 0.00 31.41 3.21
138 142 7.493743 AATCATAGAAAGTGAGATGACATGC 57.506 36.000 0.00 0.00 31.41 4.06
139 143 5.981174 TCATAGAAAGTGAGATGACATGCA 58.019 37.500 0.00 0.00 0.00 3.96
140 144 6.589135 TCATAGAAAGTGAGATGACATGCAT 58.411 36.000 0.00 0.00 40.77 3.96
155 159 8.929260 ATGACATGCATCTCAATTCCTATAAA 57.071 30.769 8.81 0.00 28.85 1.40
156 160 8.387190 TGACATGCATCTCAATTCCTATAAAG 57.613 34.615 1.73 0.00 0.00 1.85
157 161 8.212995 TGACATGCATCTCAATTCCTATAAAGA 58.787 33.333 1.73 0.00 0.00 2.52
158 162 8.985315 ACATGCATCTCAATTCCTATAAAGAA 57.015 30.769 0.00 0.00 0.00 2.52
159 163 9.412460 ACATGCATCTCAATTCCTATAAAGAAA 57.588 29.630 0.00 0.00 0.00 2.52
162 166 8.906867 TGCATCTCAATTCCTATAAAGAAAAGG 58.093 33.333 0.00 0.00 0.00 3.11
163 167 9.125026 GCATCTCAATTCCTATAAAGAAAAGGA 57.875 33.333 0.00 0.00 37.64 3.36
168 172 9.973661 TCAATTCCTATAAAGAAAAGGATGTCA 57.026 29.630 0.00 0.00 39.14 3.58
173 177 9.973661 TCCTATAAAGAAAAGGATGTCATTTGA 57.026 29.630 0.00 0.00 34.46 2.69
176 180 8.937634 ATAAAGAAAAGGATGTCATTTGATGC 57.062 30.769 0.00 0.00 29.66 3.91
177 181 5.988310 AGAAAAGGATGTCATTTGATGCA 57.012 34.783 0.00 0.00 29.66 3.96
178 182 5.717119 AGAAAAGGATGTCATTTGATGCAC 58.283 37.500 0.00 0.00 29.66 4.57
179 183 5.244402 AGAAAAGGATGTCATTTGATGCACA 59.756 36.000 0.00 0.00 29.66 4.57
180 184 4.713824 AAGGATGTCATTTGATGCACAG 57.286 40.909 0.00 0.00 0.00 3.66
181 185 3.021695 AGGATGTCATTTGATGCACAGG 58.978 45.455 0.00 0.00 0.00 4.00
182 186 3.018856 GGATGTCATTTGATGCACAGGA 58.981 45.455 0.00 0.00 0.00 3.86
183 187 3.635373 GGATGTCATTTGATGCACAGGAT 59.365 43.478 0.00 0.00 0.00 3.24
184 188 4.823442 GGATGTCATTTGATGCACAGGATA 59.177 41.667 0.00 0.00 0.00 2.59
185 189 5.048921 GGATGTCATTTGATGCACAGGATAG 60.049 44.000 0.00 0.00 0.00 2.08
186 190 4.201657 TGTCATTTGATGCACAGGATAGG 58.798 43.478 0.00 0.00 0.00 2.57
187 191 4.080413 TGTCATTTGATGCACAGGATAGGA 60.080 41.667 0.00 0.00 0.00 2.94
188 192 4.514441 GTCATTTGATGCACAGGATAGGAG 59.486 45.833 0.00 0.00 0.00 3.69
189 193 4.164796 TCATTTGATGCACAGGATAGGAGT 59.835 41.667 0.00 0.00 0.00 3.85
190 194 4.574674 TTTGATGCACAGGATAGGAGTT 57.425 40.909 0.00 0.00 0.00 3.01
191 195 4.574674 TTGATGCACAGGATAGGAGTTT 57.425 40.909 0.00 0.00 0.00 2.66
192 196 4.574674 TGATGCACAGGATAGGAGTTTT 57.425 40.909 0.00 0.00 0.00 2.43
193 197 4.922206 TGATGCACAGGATAGGAGTTTTT 58.078 39.130 0.00 0.00 0.00 1.94
240 244 6.745794 TTTTTCCTCCAAAATGTGAAGGAT 57.254 33.333 0.00 0.00 33.82 3.24
241 245 6.745794 TTTTCCTCCAAAATGTGAAGGATT 57.254 33.333 0.00 0.00 0.00 3.01
242 246 5.726980 TTCCTCCAAAATGTGAAGGATTG 57.273 39.130 0.00 0.00 0.00 2.67
243 247 4.996793 TCCTCCAAAATGTGAAGGATTGA 58.003 39.130 0.00 0.00 0.00 2.57
244 248 5.582953 TCCTCCAAAATGTGAAGGATTGAT 58.417 37.500 0.00 0.00 0.00 2.57
245 249 6.018469 TCCTCCAAAATGTGAAGGATTGATT 58.982 36.000 0.00 0.00 0.00 2.57
246 250 6.497954 TCCTCCAAAATGTGAAGGATTGATTT 59.502 34.615 0.00 0.00 0.00 2.17
247 251 7.016465 TCCTCCAAAATGTGAAGGATTGATTTT 59.984 33.333 0.00 0.00 0.00 1.82
248 252 7.662669 CCTCCAAAATGTGAAGGATTGATTTTT 59.337 33.333 0.00 0.00 0.00 1.94
249 253 9.709495 CTCCAAAATGTGAAGGATTGATTTTTA 57.291 29.630 0.00 0.00 0.00 1.52
290 294 5.937975 ATCCATTCCTACAAACCAAATGG 57.062 39.130 6.16 6.16 44.99 3.16
291 295 3.513515 TCCATTCCTACAAACCAAATGGC 59.486 43.478 7.41 0.00 43.87 4.40
292 296 3.369366 CCATTCCTACAAACCAAATGGCC 60.369 47.826 0.00 0.00 39.77 5.36
293 297 2.990740 TCCTACAAACCAAATGGCCT 57.009 45.000 3.32 0.00 39.32 5.19
294 298 2.524306 TCCTACAAACCAAATGGCCTG 58.476 47.619 3.32 0.00 39.32 4.85
295 299 2.109128 TCCTACAAACCAAATGGCCTGA 59.891 45.455 3.32 0.00 39.32 3.86
296 300 2.896685 CCTACAAACCAAATGGCCTGAA 59.103 45.455 3.32 0.00 39.32 3.02
297 301 3.323403 CCTACAAACCAAATGGCCTGAAA 59.677 43.478 3.32 0.00 39.32 2.69
298 302 3.473923 ACAAACCAAATGGCCTGAAAG 57.526 42.857 3.32 0.00 39.32 2.62
299 303 3.037549 ACAAACCAAATGGCCTGAAAGA 58.962 40.909 3.32 0.00 39.32 2.52
300 304 3.454082 ACAAACCAAATGGCCTGAAAGAA 59.546 39.130 3.32 0.00 39.32 2.52
301 305 4.080638 ACAAACCAAATGGCCTGAAAGAAA 60.081 37.500 3.32 0.00 39.32 2.52
302 306 4.769345 AACCAAATGGCCTGAAAGAAAA 57.231 36.364 3.32 0.00 39.32 2.29
303 307 4.980339 ACCAAATGGCCTGAAAGAAAAT 57.020 36.364 3.32 0.00 39.32 1.82
304 308 5.308976 ACCAAATGGCCTGAAAGAAAATT 57.691 34.783 3.32 0.00 39.32 1.82
305 309 5.693961 ACCAAATGGCCTGAAAGAAAATTT 58.306 33.333 3.32 0.00 39.32 1.82
306 310 6.128486 ACCAAATGGCCTGAAAGAAAATTTT 58.872 32.000 3.32 2.28 39.32 1.82
307 311 6.262944 ACCAAATGGCCTGAAAGAAAATTTTC 59.737 34.615 21.00 21.00 39.32 2.29
308 312 6.294120 CCAAATGGCCTGAAAGAAAATTTTCC 60.294 38.462 24.01 11.86 37.92 3.13
309 313 5.830799 ATGGCCTGAAAGAAAATTTTCCT 57.169 34.783 24.01 11.41 37.92 3.36
310 314 4.959723 TGGCCTGAAAGAAAATTTTCCTG 58.040 39.130 24.01 13.89 37.92 3.86
311 315 4.408596 TGGCCTGAAAGAAAATTTTCCTGT 59.591 37.500 24.01 11.78 37.92 4.00
312 316 4.751600 GGCCTGAAAGAAAATTTTCCTGTG 59.248 41.667 24.01 12.45 37.92 3.66
313 317 4.212004 GCCTGAAAGAAAATTTTCCTGTGC 59.788 41.667 24.01 16.21 37.92 4.57
314 318 5.358922 CCTGAAAGAAAATTTTCCTGTGCA 58.641 37.500 24.01 14.73 37.92 4.57
315 319 5.816777 CCTGAAAGAAAATTTTCCTGTGCAA 59.183 36.000 24.01 6.27 37.92 4.08
316 320 6.315891 CCTGAAAGAAAATTTTCCTGTGCAAA 59.684 34.615 24.01 4.91 37.92 3.68
317 321 7.012610 CCTGAAAGAAAATTTTCCTGTGCAAAT 59.987 33.333 24.01 2.93 37.92 2.32
318 322 7.918643 TGAAAGAAAATTTTCCTGTGCAAATC 58.081 30.769 24.01 7.51 37.92 2.17
319 323 7.769970 TGAAAGAAAATTTTCCTGTGCAAATCT 59.230 29.630 24.01 1.49 37.92 2.40
320 324 8.510243 AAAGAAAATTTTCCTGTGCAAATCTT 57.490 26.923 24.01 7.29 37.92 2.40
321 325 9.612066 AAAGAAAATTTTCCTGTGCAAATCTTA 57.388 25.926 24.01 0.00 37.92 2.10
322 326 9.783081 AAGAAAATTTTCCTGTGCAAATCTTAT 57.217 25.926 24.01 0.58 37.92 1.73
323 327 9.428097 AGAAAATTTTCCTGTGCAAATCTTATC 57.572 29.630 24.01 0.00 37.92 1.75
324 328 8.552083 AAAATTTTCCTGTGCAAATCTTATCC 57.448 30.769 0.00 0.00 0.00 2.59
325 329 7.486407 AATTTTCCTGTGCAAATCTTATCCT 57.514 32.000 0.00 0.00 0.00 3.24
326 330 8.593945 AATTTTCCTGTGCAAATCTTATCCTA 57.406 30.769 0.00 0.00 0.00 2.94
327 331 8.773033 ATTTTCCTGTGCAAATCTTATCCTAT 57.227 30.769 0.00 0.00 0.00 2.57
328 332 9.866655 ATTTTCCTGTGCAAATCTTATCCTATA 57.133 29.630 0.00 0.00 0.00 1.31
329 333 8.908786 TTTCCTGTGCAAATCTTATCCTATAG 57.091 34.615 0.00 0.00 0.00 1.31
330 334 7.855784 TCCTGTGCAAATCTTATCCTATAGA 57.144 36.000 0.00 0.00 0.00 1.98
331 335 8.262601 TCCTGTGCAAATCTTATCCTATAGAA 57.737 34.615 0.00 0.00 0.00 2.10
332 336 8.713971 TCCTGTGCAAATCTTATCCTATAGAAA 58.286 33.333 0.00 0.00 0.00 2.52
333 337 9.512588 CCTGTGCAAATCTTATCCTATAGAAAT 57.487 33.333 0.00 0.00 0.00 2.17
335 339 9.507329 TGTGCAAATCTTATCCTATAGAAATCC 57.493 33.333 0.00 0.00 0.00 3.01
336 340 9.732130 GTGCAAATCTTATCCTATAGAAATCCT 57.268 33.333 0.00 0.00 0.00 3.24
354 358 9.628500 AGAAATCCTATAACATTCCTACAAACC 57.372 33.333 0.00 0.00 0.00 3.27
355 359 9.403583 GAAATCCTATAACATTCCTACAAACCA 57.596 33.333 0.00 0.00 0.00 3.67
356 360 9.762381 AAATCCTATAACATTCCTACAAACCAA 57.238 29.630 0.00 0.00 0.00 3.67
357 361 9.762381 AATCCTATAACATTCCTACAAACCAAA 57.238 29.630 0.00 0.00 0.00 3.28
358 362 8.570068 TCCTATAACATTCCTACAAACCAAAC 57.430 34.615 0.00 0.00 0.00 2.93
359 363 7.612633 TCCTATAACATTCCTACAAACCAAACC 59.387 37.037 0.00 0.00 0.00 3.27
360 364 7.394923 CCTATAACATTCCTACAAACCAAACCA 59.605 37.037 0.00 0.00 0.00 3.67
361 365 5.941555 AACATTCCTACAAACCAAACCAA 57.058 34.783 0.00 0.00 0.00 3.67
362 366 5.941555 ACATTCCTACAAACCAAACCAAA 57.058 34.783 0.00 0.00 0.00 3.28
363 367 5.912892 ACATTCCTACAAACCAAACCAAAG 58.087 37.500 0.00 0.00 0.00 2.77
364 368 5.163353 ACATTCCTACAAACCAAACCAAAGG 60.163 40.000 0.00 0.00 0.00 3.11
365 369 4.252570 TCCTACAAACCAAACCAAAGGA 57.747 40.909 0.00 0.00 0.00 3.36
366 370 4.211920 TCCTACAAACCAAACCAAAGGAG 58.788 43.478 0.00 0.00 0.00 3.69
367 371 3.320826 CCTACAAACCAAACCAAAGGAGG 59.679 47.826 0.00 0.00 0.00 4.30
368 372 1.484653 ACAAACCAAACCAAAGGAGGC 59.515 47.619 0.00 0.00 0.00 4.70
369 373 1.128200 AAACCAAACCAAAGGAGGCC 58.872 50.000 0.00 0.00 0.00 5.19
370 374 0.264657 AACCAAACCAAAGGAGGCCT 59.735 50.000 3.86 3.86 33.87 5.19
371 375 1.154430 ACCAAACCAAAGGAGGCCTA 58.846 50.000 4.42 0.00 31.13 3.93
372 376 1.501604 ACCAAACCAAAGGAGGCCTAA 59.498 47.619 4.42 0.00 31.13 2.69
373 377 2.090999 ACCAAACCAAAGGAGGCCTAAA 60.091 45.455 4.42 0.00 31.13 1.85
374 378 2.562738 CCAAACCAAAGGAGGCCTAAAG 59.437 50.000 4.42 0.00 31.13 1.85
375 379 3.230976 CAAACCAAAGGAGGCCTAAAGT 58.769 45.455 4.42 0.00 31.13 2.66
376 380 3.612795 AACCAAAGGAGGCCTAAAGTT 57.387 42.857 4.42 0.81 31.13 2.66
377 381 2.876581 ACCAAAGGAGGCCTAAAGTTG 58.123 47.619 4.42 8.12 31.13 3.16
378 382 1.546029 CCAAAGGAGGCCTAAAGTTGC 59.454 52.381 4.42 0.00 31.13 4.17
398 402 1.733912 CCATGTTGACAGGTCACGATG 59.266 52.381 0.77 7.15 39.66 3.84
441 449 7.043986 GCACTATACGTGAATAGTCAACTCTTG 60.044 40.741 7.83 0.00 46.81 3.02
458 466 3.544684 TCTTGTGTGCAATCAACAGACT 58.455 40.909 0.00 0.00 32.80 3.24
491 503 3.551485 GCGAATAATGCCAACATGGTTTC 59.449 43.478 0.00 0.00 40.46 2.78
498 510 1.272212 GCCAACATGGTTTCCGTCAAT 59.728 47.619 0.00 0.00 40.46 2.57
550 562 6.594744 TCATGTGGTAGAAGTAATCATGCAT 58.405 36.000 0.00 0.00 33.58 3.96
551 563 6.484308 TCATGTGGTAGAAGTAATCATGCATG 59.516 38.462 21.07 21.07 33.58 4.06
552 564 4.576053 TGTGGTAGAAGTAATCATGCATGC 59.424 41.667 22.25 11.82 0.00 4.06
553 565 4.576053 GTGGTAGAAGTAATCATGCATGCA 59.424 41.667 25.04 25.04 0.00 3.96
667 683 3.071023 TGCAAGTTGCCAAGTAGAGTAGT 59.929 43.478 24.59 0.00 44.23 2.73
668 684 4.282449 TGCAAGTTGCCAAGTAGAGTAGTA 59.718 41.667 24.59 0.00 44.23 1.82
669 685 5.046591 TGCAAGTTGCCAAGTAGAGTAGTAT 60.047 40.000 24.59 0.00 44.23 2.12
671 687 6.398918 CAAGTTGCCAAGTAGAGTAGTATGT 58.601 40.000 0.00 0.00 0.00 2.29
672 688 6.210287 AGTTGCCAAGTAGAGTAGTATGTC 57.790 41.667 0.00 0.00 0.00 3.06
673 689 4.895224 TGCCAAGTAGAGTAGTATGTCG 57.105 45.455 0.00 0.00 0.00 4.35
674 690 4.520179 TGCCAAGTAGAGTAGTATGTCGA 58.480 43.478 0.00 0.00 0.00 4.20
675 691 5.131067 TGCCAAGTAGAGTAGTATGTCGAT 58.869 41.667 0.00 0.00 0.00 3.59
676 692 5.593095 TGCCAAGTAGAGTAGTATGTCGATT 59.407 40.000 0.00 0.00 0.00 3.34
677 693 6.144175 GCCAAGTAGAGTAGTATGTCGATTC 58.856 44.000 0.00 0.00 0.00 2.52
678 694 6.016943 GCCAAGTAGAGTAGTATGTCGATTCT 60.017 42.308 0.00 0.00 0.00 2.40
679 695 7.468906 GCCAAGTAGAGTAGTATGTCGATTCTT 60.469 40.741 0.00 0.00 0.00 2.52
680 696 7.858382 CCAAGTAGAGTAGTATGTCGATTCTTG 59.142 40.741 0.00 0.00 0.00 3.02
714 730 9.593565 TCACAGAGACTTGGTATATATTCTGAT 57.406 33.333 11.81 0.00 35.84 2.90
764 780 6.072893 GCTTGTACAGAAACGGAATTTCCTAA 60.073 38.462 13.45 0.00 46.94 2.69
765 781 7.361799 GCTTGTACAGAAACGGAATTTCCTAAT 60.362 37.037 13.45 0.00 46.94 1.73
766 782 9.158233 CTTGTACAGAAACGGAATTTCCTAATA 57.842 33.333 13.45 0.00 46.94 0.98
767 783 8.483307 TGTACAGAAACGGAATTTCCTAATAC 57.517 34.615 13.45 6.82 46.94 1.89
768 784 8.316214 TGTACAGAAACGGAATTTCCTAATACT 58.684 33.333 13.45 4.10 46.94 2.12
769 785 9.807649 GTACAGAAACGGAATTTCCTAATACTA 57.192 33.333 13.45 0.00 46.94 1.82
770 786 8.713737 ACAGAAACGGAATTTCCTAATACTAC 57.286 34.615 13.45 0.00 46.94 2.73
771 787 8.537858 ACAGAAACGGAATTTCCTAATACTACT 58.462 33.333 13.45 0.43 46.94 2.57
794 810 6.884836 ACTATTTTTAGATTCAACGCTCCCTT 59.115 34.615 0.00 0.00 0.00 3.95
795 811 8.044908 ACTATTTTTAGATTCAACGCTCCCTTA 58.955 33.333 0.00 0.00 0.00 2.69
821 837 9.696917 AAGTCTTAAACTAAAATCAAAGCCATG 57.303 29.630 0.00 0.00 37.17 3.66
822 838 9.077885 AGTCTTAAACTAAAATCAAAGCCATGA 57.922 29.630 0.00 0.00 36.07 3.07
823 839 9.860898 GTCTTAAACTAAAATCAAAGCCATGAT 57.139 29.630 0.00 0.00 41.74 2.45
825 841 9.305925 CTTAAACTAAAATCAAAGCCATGATCC 57.694 33.333 0.00 0.00 39.08 3.36
826 842 6.855763 AACTAAAATCAAAGCCATGATCCA 57.144 33.333 0.00 0.00 39.08 3.41
827 843 7.427989 AACTAAAATCAAAGCCATGATCCAT 57.572 32.000 0.00 0.00 39.08 3.41
828 844 7.047460 ACTAAAATCAAAGCCATGATCCATC 57.953 36.000 0.00 0.00 39.08 3.51
829 845 6.837568 ACTAAAATCAAAGCCATGATCCATCT 59.162 34.615 0.00 0.00 39.08 2.90
830 846 5.786264 AAATCAAAGCCATGATCCATCTC 57.214 39.130 0.00 0.00 39.08 2.75
831 847 4.726035 ATCAAAGCCATGATCCATCTCT 57.274 40.909 0.00 0.00 35.07 3.10
832 848 3.816994 TCAAAGCCATGATCCATCTCTG 58.183 45.455 0.00 0.00 0.00 3.35
833 849 3.457012 TCAAAGCCATGATCCATCTCTGA 59.543 43.478 0.00 0.00 0.00 3.27
834 850 3.773418 AAGCCATGATCCATCTCTGAG 57.227 47.619 0.00 0.00 0.00 3.35
835 851 1.348366 AGCCATGATCCATCTCTGAGC 59.652 52.381 0.00 0.00 0.00 4.26
836 852 1.348366 GCCATGATCCATCTCTGAGCT 59.652 52.381 0.00 0.00 0.00 4.09
837 853 2.872440 GCCATGATCCATCTCTGAGCTG 60.872 54.545 0.00 0.06 0.00 4.24
838 854 2.633481 CCATGATCCATCTCTGAGCTGA 59.367 50.000 9.95 2.11 0.00 4.26
839 855 3.306433 CCATGATCCATCTCTGAGCTGAG 60.306 52.174 9.95 0.00 35.52 3.35
840 856 1.687660 TGATCCATCTCTGAGCTGAGC 59.312 52.381 9.95 0.00 34.29 4.26
841 857 1.965643 GATCCATCTCTGAGCTGAGCT 59.034 52.381 6.69 6.69 43.88 4.09
842 858 1.112950 TCCATCTCTGAGCTGAGCTG 58.887 55.000 13.71 0.00 39.88 4.24
843 859 0.825410 CCATCTCTGAGCTGAGCTGT 59.175 55.000 13.71 0.00 39.88 4.40
844 860 1.207570 CCATCTCTGAGCTGAGCTGTT 59.792 52.381 13.71 0.00 39.88 3.16
845 861 2.354906 CCATCTCTGAGCTGAGCTGTTT 60.355 50.000 13.71 0.00 39.88 2.83
846 862 2.739885 TCTCTGAGCTGAGCTGTTTC 57.260 50.000 13.71 0.00 39.88 2.78
847 863 1.274728 TCTCTGAGCTGAGCTGTTTCC 59.725 52.381 13.71 0.00 39.88 3.13
848 864 0.037882 TCTGAGCTGAGCTGTTTCCG 60.038 55.000 13.71 0.00 39.88 4.30
849 865 0.320247 CTGAGCTGAGCTGTTTCCGT 60.320 55.000 13.71 0.00 39.88 4.69
850 866 0.601046 TGAGCTGAGCTGTTTCCGTG 60.601 55.000 13.71 0.00 39.88 4.94
851 867 1.294659 GAGCTGAGCTGTTTCCGTGG 61.295 60.000 13.71 0.00 39.88 4.94
852 868 2.328099 GCTGAGCTGTTTCCGTGGG 61.328 63.158 0.00 0.00 0.00 4.61
853 869 1.371183 CTGAGCTGTTTCCGTGGGA 59.629 57.895 0.00 0.00 0.00 4.37
854 870 0.036010 CTGAGCTGTTTCCGTGGGAT 60.036 55.000 0.00 0.00 0.00 3.85
877 893 5.434408 TGATCATGAATGAAGCTAGCACTT 58.566 37.500 18.83 2.68 40.69 3.16
901 917 0.250467 AGATGTCAACGCTTGCCTGT 60.250 50.000 0.00 0.00 0.00 4.00
902 918 0.110056 GATGTCAACGCTTGCCTGTG 60.110 55.000 0.00 0.00 0.00 3.66
938 954 4.373156 ACTAGCAAACAGAAGTGGGATT 57.627 40.909 0.00 0.00 0.00 3.01
985 1007 1.001924 TCGAGATCGAGAGCAATCAGC 60.002 52.381 0.00 0.00 44.22 4.26
986 1008 1.268948 CGAGATCGAGAGCAATCAGCA 60.269 52.381 0.00 0.00 44.17 4.41
987 1009 2.797439 CGAGATCGAGAGCAATCAGCAA 60.797 50.000 0.00 0.00 44.17 3.91
988 1010 4.281617 CGAGATCGAGAGCAATCAGCAAA 61.282 47.826 0.00 0.00 44.17 3.68
1644 1666 2.355837 ACGCTGCACATCGTCGTT 60.356 55.556 0.00 0.00 33.09 3.85
1777 1799 0.611714 AACCAACTACCGTAGCTGGG 59.388 55.000 25.19 16.91 44.44 4.45
1953 1975 4.787999 GGCTACTTCTCCGACGTG 57.212 61.111 0.00 0.00 0.00 4.49
2235 2257 2.476997 GCTCTTCTTCACTTCGTCCAAC 59.523 50.000 0.00 0.00 0.00 3.77
2334 2356 2.345760 GCAGTGGGGCTCCATGTTG 61.346 63.158 9.60 9.64 46.09 3.33
2515 2537 4.382254 CCAACCAGCATGCATGAGTATTTT 60.382 41.667 30.64 11.25 31.97 1.82
2532 2554 9.083422 TGAGTATTTTGGTTGGATTGAAATGTA 57.917 29.630 0.00 0.00 0.00 2.29
2541 2563 6.203915 GGTTGGATTGAAATGTACCCAAAAAC 59.796 38.462 0.00 0.00 35.71 2.43
2549 2571 6.325028 TGAAATGTACCCAAAAACAAGGATGA 59.675 34.615 0.00 0.00 0.00 2.92
2562 2584 0.243907 AGGATGACACGTCTTGGTCG 59.756 55.000 0.00 0.00 36.83 4.79
2576 2598 0.323302 TGGTCGACTAGCAATGGCAA 59.677 50.000 16.46 0.00 44.61 4.52
2580 2602 4.039852 TGGTCGACTAGCAATGGCAATATA 59.960 41.667 16.46 0.00 44.61 0.86
2581 2603 5.178797 GGTCGACTAGCAATGGCAATATAT 58.821 41.667 16.46 0.00 44.61 0.86
2582 2604 6.071051 TGGTCGACTAGCAATGGCAATATATA 60.071 38.462 16.46 0.00 44.61 0.86
2583 2605 6.986817 GGTCGACTAGCAATGGCAATATATAT 59.013 38.462 16.46 0.00 44.61 0.86
2584 2606 7.495934 GGTCGACTAGCAATGGCAATATATATT 59.504 37.037 16.46 1.91 44.61 1.28
2585 2607 9.529325 GTCGACTAGCAATGGCAATATATATTA 57.471 33.333 8.70 0.00 44.61 0.98
2700 2722 6.918022 GTGAATTTCAGGTCCTTGTTTAACAG 59.082 38.462 0.00 0.00 0.00 3.16
2758 2780 6.897966 TCTATGATGTGGGAAGTCTAAGAAGT 59.102 38.462 0.00 0.00 0.00 3.01
2759 2781 5.825593 TGATGTGGGAAGTCTAAGAAGTT 57.174 39.130 0.00 0.00 0.00 2.66
2760 2782 6.187727 TGATGTGGGAAGTCTAAGAAGTTT 57.812 37.500 0.00 0.00 0.00 2.66
2761 2783 6.601332 TGATGTGGGAAGTCTAAGAAGTTTT 58.399 36.000 0.00 0.00 0.00 2.43
2762 2784 7.741785 TGATGTGGGAAGTCTAAGAAGTTTTA 58.258 34.615 0.00 0.00 0.00 1.52
2763 2785 8.215050 TGATGTGGGAAGTCTAAGAAGTTTTAA 58.785 33.333 0.00 0.00 0.00 1.52
2764 2786 9.232473 GATGTGGGAAGTCTAAGAAGTTTTAAT 57.768 33.333 0.00 0.00 0.00 1.40
2852 2877 9.498176 CAATCCTCATGATATTATGTGAAGTCA 57.502 33.333 10.24 0.00 31.83 3.41
2872 2897 2.425312 CAACCGCACCAATATTTGCCTA 59.575 45.455 6.55 0.00 35.14 3.93
2874 2899 1.002900 CCGCACCAATATTTGCCTACG 60.003 52.381 6.55 0.00 35.14 3.51
2906 2946 4.019321 GCTATGAGGCTGGGGTTATTGATA 60.019 45.833 0.00 0.00 0.00 2.15
2949 4556 4.849518 TCATCAATGTGGGAATAACGGAA 58.150 39.130 0.00 0.00 0.00 4.30
2964 4571 1.202758 ACGGAAATTCACAGTGCCTCA 60.203 47.619 0.00 0.00 0.00 3.86
2976 4583 3.134127 GCCTCAACCGCATCCACC 61.134 66.667 0.00 0.00 0.00 4.61
2988 4595 1.200519 CATCCACCGGAAGACCCTTA 58.799 55.000 9.46 0.00 34.34 2.69
2990 4597 1.961133 TCCACCGGAAGACCCTTAAT 58.039 50.000 9.46 0.00 0.00 1.40
2992 4599 3.452878 TCCACCGGAAGACCCTTAATTA 58.547 45.455 9.46 0.00 0.00 1.40
2993 4600 3.198417 TCCACCGGAAGACCCTTAATTAC 59.802 47.826 9.46 0.00 0.00 1.89
2994 4601 3.199289 CCACCGGAAGACCCTTAATTACT 59.801 47.826 9.46 0.00 0.00 2.24
2995 4602 4.406649 CCACCGGAAGACCCTTAATTACTA 59.593 45.833 9.46 0.00 0.00 1.82
2996 4603 5.452917 CCACCGGAAGACCCTTAATTACTAG 60.453 48.000 9.46 0.00 0.00 2.57
2997 4604 4.652881 ACCGGAAGACCCTTAATTACTAGG 59.347 45.833 9.46 0.00 0.00 3.02
3029 4636 1.679311 GCATATCATCAGCCCCCGA 59.321 57.895 0.00 0.00 0.00 5.14
3030 4637 0.036732 GCATATCATCAGCCCCCGAA 59.963 55.000 0.00 0.00 0.00 4.30
3034 4641 3.781307 CATCAGCCCCCGAACCGA 61.781 66.667 0.00 0.00 0.00 4.69
3049 4656 3.746751 CGAACCGAGGAGAGGAGGTTATA 60.747 52.174 0.00 0.00 45.88 0.98
3060 4667 6.093617 AGAGGAGGTTATAGAGGACTTTGA 57.906 41.667 0.00 0.00 0.00 2.69
3065 4672 6.126739 GGAGGTTATAGAGGACTTTGACCAAT 60.127 42.308 0.00 0.00 36.65 3.16
3099 4714 1.844663 GGCTAGATAACGCGTTCGC 59.155 57.895 30.28 20.84 39.84 4.70
3111 4726 1.928653 CGTTCGCGGTCTGTTTTGA 59.071 52.632 6.13 0.00 36.88 2.69
3115 4730 1.872388 TCGCGGTCTGTTTTGATCAA 58.128 45.000 6.13 3.38 0.00 2.57
3121 4736 3.058914 CGGTCTGTTTTGATCAAGGTCAC 60.059 47.826 8.41 5.40 0.00 3.67
3128 4743 5.760743 TGTTTTGATCAAGGTCACGACAATA 59.239 36.000 8.41 0.00 0.00 1.90
3139 4754 2.093921 TCACGACAATAATCCTTCCGCA 60.094 45.455 0.00 0.00 0.00 5.69
3140 4755 2.285220 CACGACAATAATCCTTCCGCAG 59.715 50.000 0.00 0.00 0.00 5.18
3157 4772 2.542595 CGCAGGTTCACTTACGAAAACT 59.457 45.455 0.00 0.00 0.00 2.66
3164 4779 7.427318 CAGGTTCACTTACGAAAACTTTGTTAC 59.573 37.037 0.00 0.00 0.00 2.50
3178 4793 6.127810 ACTTTGTTACGACTTTTCCTTTCC 57.872 37.500 0.00 0.00 0.00 3.13
3179 4794 5.884232 ACTTTGTTACGACTTTTCCTTTCCT 59.116 36.000 0.00 0.00 0.00 3.36
3231 4846 7.589574 AACATCGTGTTTAAATTTTATGCCC 57.410 32.000 0.00 0.00 37.26 5.36
3232 4847 6.930731 ACATCGTGTTTAAATTTTATGCCCT 58.069 32.000 0.00 0.00 0.00 5.19
3233 4848 8.057536 ACATCGTGTTTAAATTTTATGCCCTA 57.942 30.769 0.00 0.00 0.00 3.53
3234 4849 8.691797 ACATCGTGTTTAAATTTTATGCCCTAT 58.308 29.630 0.00 0.00 0.00 2.57
3235 4850 9.528018 CATCGTGTTTAAATTTTATGCCCTATT 57.472 29.630 0.00 0.00 0.00 1.73
3237 4852 9.360093 TCGTGTTTAAATTTTATGCCCTATTTG 57.640 29.630 0.00 0.00 0.00 2.32
3238 4853 9.360093 CGTGTTTAAATTTTATGCCCTATTTGA 57.640 29.630 0.00 0.00 0.00 2.69
3253 4868 9.420118 TGCCCTATTTGACATTGATAAATAACT 57.580 29.630 0.00 0.00 0.00 2.24
3275 4890 7.158099 ACTTTTTCCCTATGTAACAATGAGC 57.842 36.000 0.00 0.00 0.00 4.26
3276 4891 6.152831 ACTTTTTCCCTATGTAACAATGAGCC 59.847 38.462 0.00 0.00 0.00 4.70
3277 4892 5.450818 TTTCCCTATGTAACAATGAGCCT 57.549 39.130 0.00 0.00 0.00 4.58
3278 4893 6.569127 TTTCCCTATGTAACAATGAGCCTA 57.431 37.500 0.00 0.00 0.00 3.93
3279 4894 6.569127 TTCCCTATGTAACAATGAGCCTAA 57.431 37.500 0.00 0.00 0.00 2.69
3280 4895 6.569127 TCCCTATGTAACAATGAGCCTAAA 57.431 37.500 0.00 0.00 0.00 1.85
3281 4896 7.149202 TCCCTATGTAACAATGAGCCTAAAT 57.851 36.000 0.00 0.00 0.00 1.40
3282 4897 7.582719 TCCCTATGTAACAATGAGCCTAAATT 58.417 34.615 0.00 0.00 0.00 1.82
3283 4898 7.502226 TCCCTATGTAACAATGAGCCTAAATTG 59.498 37.037 0.00 0.00 39.26 2.32
3284 4899 7.141363 CCTATGTAACAATGAGCCTAAATTGC 58.859 38.462 0.00 0.00 37.30 3.56
3285 4900 4.980590 TGTAACAATGAGCCTAAATTGCG 58.019 39.130 0.00 0.00 37.30 4.85
3286 4901 3.508744 AACAATGAGCCTAAATTGCGG 57.491 42.857 0.00 0.00 37.30 5.69
3287 4902 2.446435 ACAATGAGCCTAAATTGCGGT 58.554 42.857 0.00 0.00 37.30 5.68
3288 4903 2.423538 ACAATGAGCCTAAATTGCGGTC 59.576 45.455 0.00 0.00 37.30 4.79
3289 4904 1.680338 ATGAGCCTAAATTGCGGTCC 58.320 50.000 0.00 0.00 0.00 4.46
3290 4905 0.393808 TGAGCCTAAATTGCGGTCCC 60.394 55.000 0.00 0.00 0.00 4.46
3291 4906 1.436983 GAGCCTAAATTGCGGTCCCG 61.437 60.000 0.24 0.24 43.09 5.14
3292 4907 1.747745 GCCTAAATTGCGGTCCCGT 60.748 57.895 7.66 0.00 42.09 5.28
3293 4908 1.988834 GCCTAAATTGCGGTCCCGTG 61.989 60.000 7.66 0.00 42.09 4.94
3294 4909 1.427819 CTAAATTGCGGTCCCGTGC 59.572 57.895 7.66 0.00 42.09 5.34
3295 4910 1.302383 CTAAATTGCGGTCCCGTGCA 61.302 55.000 7.66 0.00 42.09 4.57
3296 4911 0.678366 TAAATTGCGGTCCCGTGCAT 60.678 50.000 7.66 0.00 41.42 3.96
3297 4912 1.933115 AAATTGCGGTCCCGTGCATC 61.933 55.000 7.66 0.00 41.42 3.91
3308 4923 4.819761 GTGCATCGCCCGCTCAGA 62.820 66.667 0.00 0.00 0.00 3.27
3309 4924 4.081185 TGCATCGCCCGCTCAGAA 62.081 61.111 0.00 0.00 0.00 3.02
3310 4925 2.819595 GCATCGCCCGCTCAGAAA 60.820 61.111 0.00 0.00 0.00 2.52
3311 4926 2.398554 GCATCGCCCGCTCAGAAAA 61.399 57.895 0.00 0.00 0.00 2.29
3312 4927 1.922135 GCATCGCCCGCTCAGAAAAA 61.922 55.000 0.00 0.00 0.00 1.94
3332 4947 6.969993 AAAAACAAGTATTTGACCTAGCCA 57.030 33.333 4.81 0.00 37.73 4.75
3333 4948 6.575162 AAAACAAGTATTTGACCTAGCCAG 57.425 37.500 4.81 0.00 37.73 4.85
3334 4949 3.610911 ACAAGTATTTGACCTAGCCAGC 58.389 45.455 4.81 0.00 37.73 4.85
3335 4950 2.945668 CAAGTATTTGACCTAGCCAGCC 59.054 50.000 0.00 0.00 36.36 4.85
3336 4951 1.139058 AGTATTTGACCTAGCCAGCCG 59.861 52.381 0.00 0.00 0.00 5.52
3337 4952 0.179056 TATTTGACCTAGCCAGCCGC 60.179 55.000 0.00 0.00 37.98 6.53
3338 4953 2.893682 ATTTGACCTAGCCAGCCGCC 62.894 60.000 0.00 0.00 38.78 6.13
3347 4962 4.676951 CCAGCCGCCCCTCCAAAA 62.677 66.667 0.00 0.00 0.00 2.44
3348 4963 2.600173 CAGCCGCCCCTCCAAAAA 60.600 61.111 0.00 0.00 0.00 1.94
3349 4964 2.283173 AGCCGCCCCTCCAAAAAG 60.283 61.111 0.00 0.00 0.00 2.27
3350 4965 4.069232 GCCGCCCCTCCAAAAAGC 62.069 66.667 0.00 0.00 0.00 3.51
3351 4966 2.283173 CCGCCCCTCCAAAAAGCT 60.283 61.111 0.00 0.00 0.00 3.74
3352 4967 1.001393 CCGCCCCTCCAAAAAGCTA 60.001 57.895 0.00 0.00 0.00 3.32
3353 4968 1.032114 CCGCCCCTCCAAAAAGCTAG 61.032 60.000 0.00 0.00 0.00 3.42
3354 4969 1.032114 CGCCCCTCCAAAAAGCTAGG 61.032 60.000 0.00 0.00 0.00 3.02
3356 4971 0.704664 CCCCTCCAAAAAGCTAGGGT 59.295 55.000 14.64 0.00 46.28 4.34
3357 4972 1.920351 CCCCTCCAAAAAGCTAGGGTA 59.080 52.381 14.64 0.00 46.28 3.69
3358 4973 2.356844 CCCCTCCAAAAAGCTAGGGTAC 60.357 54.545 14.64 0.00 46.28 3.34
3359 4974 2.576648 CCCTCCAAAAAGCTAGGGTACT 59.423 50.000 8.64 0.00 43.26 2.73
3360 4975 3.370633 CCCTCCAAAAAGCTAGGGTACTC 60.371 52.174 8.64 0.00 43.26 2.59
3361 4976 3.519913 CCTCCAAAAAGCTAGGGTACTCT 59.480 47.826 0.00 0.00 0.00 3.24
3362 4977 4.508662 CTCCAAAAAGCTAGGGTACTCTG 58.491 47.826 5.20 0.00 0.00 3.35
3363 4978 3.010420 CCAAAAAGCTAGGGTACTCTGC 58.990 50.000 5.20 7.29 0.00 4.26
3364 4979 3.010420 CAAAAAGCTAGGGTACTCTGCC 58.990 50.000 5.20 0.00 0.00 4.85
3365 4980 2.255770 AAAGCTAGGGTACTCTGCCT 57.744 50.000 5.20 0.00 0.00 4.75
3366 4981 1.783071 AAGCTAGGGTACTCTGCCTC 58.217 55.000 5.20 0.00 0.00 4.70
3367 4982 0.105913 AGCTAGGGTACTCTGCCTCC 60.106 60.000 5.20 0.00 0.00 4.30
3368 4983 1.116536 GCTAGGGTACTCTGCCTCCC 61.117 65.000 5.20 0.00 40.16 4.30
3369 4984 0.824182 CTAGGGTACTCTGCCTCCCG 60.824 65.000 5.20 0.00 44.13 5.14
3370 4985 2.923634 TAGGGTACTCTGCCTCCCGC 62.924 65.000 5.20 0.00 44.13 6.13
3371 4986 3.851128 GGTACTCTGCCTCCCGCC 61.851 72.222 0.00 0.00 36.24 6.13
3372 4987 4.208686 GTACTCTGCCTCCCGCCG 62.209 72.222 0.00 0.00 36.24 6.46
3400 5015 4.471726 CGGTCCGTCCCGTCTTCG 62.472 72.222 2.08 0.00 43.07 3.79
3410 5025 4.496670 CGTCTTCGGTGGCCTTAG 57.503 61.111 3.32 0.00 0.00 2.18
3411 5026 1.153628 CGTCTTCGGTGGCCTTAGG 60.154 63.158 3.32 0.00 0.00 2.69
3412 5027 1.601419 CGTCTTCGGTGGCCTTAGGA 61.601 60.000 3.32 0.00 0.00 2.94
3413 5028 0.108281 GTCTTCGGTGGCCTTAGGAC 60.108 60.000 3.32 0.00 0.00 3.85
3414 5029 1.221021 CTTCGGTGGCCTTAGGACC 59.779 63.158 0.00 3.00 0.00 4.46
3415 5030 1.536907 TTCGGTGGCCTTAGGACCA 60.537 57.895 0.00 5.96 0.00 4.02
3416 5031 0.912487 TTCGGTGGCCTTAGGACCAT 60.912 55.000 15.37 0.00 38.46 3.55
3417 5032 1.153168 CGGTGGCCTTAGGACCATG 60.153 63.158 15.37 9.15 38.46 3.66
3418 5033 1.227383 GGTGGCCTTAGGACCATGG 59.773 63.158 11.19 11.19 38.46 3.66
3419 5034 1.279025 GGTGGCCTTAGGACCATGGA 61.279 60.000 21.47 0.00 38.46 3.41
3420 5035 0.181350 GTGGCCTTAGGACCATGGAG 59.819 60.000 21.47 4.34 38.46 3.86
3421 5036 0.988145 TGGCCTTAGGACCATGGAGG 60.988 60.000 21.47 15.54 45.67 4.30
3422 5037 1.149401 GCCTTAGGACCATGGAGGC 59.851 63.158 21.89 21.89 45.21 4.70
3423 5038 1.447643 CCTTAGGACCATGGAGGCG 59.552 63.158 21.47 1.14 43.14 5.52
3424 5039 1.447643 CTTAGGACCATGGAGGCGG 59.552 63.158 21.47 0.00 43.14 6.13
3425 5040 1.002403 TTAGGACCATGGAGGCGGA 59.998 57.895 21.47 0.00 43.14 5.54
3426 5041 1.048724 TTAGGACCATGGAGGCGGAG 61.049 60.000 21.47 0.00 43.14 4.63
3427 5042 2.238319 TAGGACCATGGAGGCGGAGT 62.238 60.000 21.47 0.00 43.14 3.85
3428 5043 2.187946 GACCATGGAGGCGGAGTG 59.812 66.667 21.47 0.00 43.14 3.51
3429 5044 3.391665 GACCATGGAGGCGGAGTGG 62.392 68.421 21.47 0.00 43.14 4.00
3430 5045 3.083349 CCATGGAGGCGGAGTGGA 61.083 66.667 5.56 0.00 31.59 4.02
3431 5046 2.446848 CCATGGAGGCGGAGTGGAT 61.447 63.158 5.56 0.00 31.59 3.41
3432 5047 1.070445 CATGGAGGCGGAGTGGATC 59.930 63.158 0.00 0.00 0.00 3.36
3433 5048 1.074926 ATGGAGGCGGAGTGGATCT 60.075 57.895 0.00 0.00 0.00 2.75
3434 5049 1.118356 ATGGAGGCGGAGTGGATCTC 61.118 60.000 0.00 0.00 42.07 2.75
3435 5050 2.725008 GAGGCGGAGTGGATCTCG 59.275 66.667 0.00 0.00 43.60 4.04
3436 5051 3.492311 GAGGCGGAGTGGATCTCGC 62.492 68.421 0.00 0.00 43.60 5.03
3437 5052 4.593864 GGCGGAGTGGATCTCGCC 62.594 72.222 9.78 9.78 46.42 5.54
3438 5053 4.593864 GCGGAGTGGATCTCGCCC 62.594 72.222 0.00 0.00 43.60 6.13
3439 5054 3.917760 CGGAGTGGATCTCGCCCC 61.918 72.222 0.00 0.00 43.60 5.80
3440 5055 2.444895 GGAGTGGATCTCGCCCCT 60.445 66.667 0.00 0.00 43.60 4.79
3441 5056 2.066999 GGAGTGGATCTCGCCCCTT 61.067 63.158 0.00 0.00 43.60 3.95
3442 5057 1.144936 GAGTGGATCTCGCCCCTTG 59.855 63.158 0.00 0.00 33.25 3.61
3443 5058 2.514824 GTGGATCTCGCCCCTTGC 60.515 66.667 0.00 0.00 0.00 4.01
3444 5059 3.797353 TGGATCTCGCCCCTTGCC 61.797 66.667 0.00 0.00 36.24 4.52
3445 5060 4.918201 GGATCTCGCCCCTTGCCG 62.918 72.222 0.00 0.00 36.24 5.69
3446 5061 4.918201 GATCTCGCCCCTTGCCGG 62.918 72.222 0.00 0.00 36.24 6.13
3468 5083 2.711978 GGAGGGCTCCGTTTTTAGAT 57.288 50.000 0.00 0.00 40.36 1.98
3469 5084 2.562635 GGAGGGCTCCGTTTTTAGATC 58.437 52.381 0.00 0.00 40.36 2.75
3470 5085 2.170817 GGAGGGCTCCGTTTTTAGATCT 59.829 50.000 0.00 0.00 40.36 2.75
3471 5086 3.370633 GGAGGGCTCCGTTTTTAGATCTT 60.371 47.826 0.00 0.00 40.36 2.40
3472 5087 4.262617 GAGGGCTCCGTTTTTAGATCTTT 58.737 43.478 0.00 0.00 0.00 2.52
3473 5088 4.663334 AGGGCTCCGTTTTTAGATCTTTT 58.337 39.130 0.00 0.00 0.00 2.27
3474 5089 5.077564 AGGGCTCCGTTTTTAGATCTTTTT 58.922 37.500 0.00 0.00 0.00 1.94
3497 5112 7.845066 TTTTTATTTTTGTTAGGGTTTGCGT 57.155 28.000 0.00 0.00 0.00 5.24
3498 5113 7.466193 TTTTATTTTTGTTAGGGTTTGCGTC 57.534 32.000 0.00 0.00 0.00 5.19
3499 5114 3.439895 TTTTTGTTAGGGTTTGCGTCC 57.560 42.857 0.00 0.00 0.00 4.79
3500 5115 2.351706 TTTGTTAGGGTTTGCGTCCT 57.648 45.000 0.00 0.00 37.18 3.85
3501 5116 3.488778 TTTGTTAGGGTTTGCGTCCTA 57.511 42.857 0.00 0.00 34.75 2.94
3502 5117 2.460757 TGTTAGGGTTTGCGTCCTAC 57.539 50.000 0.00 0.00 35.56 3.18
3503 5118 1.972795 TGTTAGGGTTTGCGTCCTACT 59.027 47.619 0.00 0.00 35.56 2.57
3504 5119 2.028748 TGTTAGGGTTTGCGTCCTACTC 60.029 50.000 0.00 0.00 35.56 2.59
3505 5120 1.927487 TAGGGTTTGCGTCCTACTCA 58.073 50.000 0.00 0.00 34.75 3.41
3506 5121 0.608640 AGGGTTTGCGTCCTACTCAG 59.391 55.000 0.00 0.00 0.00 3.35
3507 5122 0.391263 GGGTTTGCGTCCTACTCAGG 60.391 60.000 0.00 0.00 44.17 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 47 0.321122 GGCTAGCTCGGGATCATTGG 60.321 60.000 15.72 0.00 0.00 3.16
70 74 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
72 76 7.954666 TTTTTATCCTATGAACCAAAGGAGG 57.045 36.000 0.00 0.00 42.53 4.30
73 77 8.971073 ACATTTTTATCCTATGAACCAAAGGAG 58.029 33.333 0.00 0.00 42.53 3.69
75 79 9.369904 CAACATTTTTATCCTATGAACCAAAGG 57.630 33.333 0.00 0.00 0.00 3.11
76 80 9.927668 ACAACATTTTTATCCTATGAACCAAAG 57.072 29.630 0.00 0.00 0.00 2.77
79 83 9.184523 CCTACAACATTTTTATCCTATGAACCA 57.815 33.333 0.00 0.00 0.00 3.67
80 84 9.403583 TCCTACAACATTTTTATCCTATGAACC 57.596 33.333 0.00 0.00 0.00 3.62
103 107 9.844257 CTCACTTTCTATGATTTTCCTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
104 108 9.838339 TCTCACTTTCTATGATTTTCCTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
108 112 9.823647 GTCATCTCACTTTCTATGATTTTCCTA 57.176 33.333 0.00 0.00 31.49 2.94
109 113 8.324306 TGTCATCTCACTTTCTATGATTTTCCT 58.676 33.333 0.00 0.00 31.49 3.36
110 114 8.498054 TGTCATCTCACTTTCTATGATTTTCC 57.502 34.615 0.00 0.00 31.49 3.13
111 115 9.932699 CATGTCATCTCACTTTCTATGATTTTC 57.067 33.333 0.00 0.00 31.49 2.29
112 116 8.404000 GCATGTCATCTCACTTTCTATGATTTT 58.596 33.333 0.00 0.00 31.49 1.82
113 117 7.555195 TGCATGTCATCTCACTTTCTATGATTT 59.445 33.333 0.00 0.00 31.49 2.17
114 118 7.052248 TGCATGTCATCTCACTTTCTATGATT 58.948 34.615 0.00 0.00 31.49 2.57
115 119 6.589135 TGCATGTCATCTCACTTTCTATGAT 58.411 36.000 0.00 0.00 31.49 2.45
116 120 5.981174 TGCATGTCATCTCACTTTCTATGA 58.019 37.500 0.00 0.00 0.00 2.15
117 121 6.862711 ATGCATGTCATCTCACTTTCTATG 57.137 37.500 0.00 0.00 0.00 2.23
130 134 8.929260 TTTATAGGAATTGAGATGCATGTCAT 57.071 30.769 25.41 13.07 38.32 3.06
131 135 8.212995 TCTTTATAGGAATTGAGATGCATGTCA 58.787 33.333 21.70 21.70 0.00 3.58
132 136 8.613060 TCTTTATAGGAATTGAGATGCATGTC 57.387 34.615 16.63 16.63 0.00 3.06
133 137 8.985315 TTCTTTATAGGAATTGAGATGCATGT 57.015 30.769 2.46 0.00 0.00 3.21
136 140 8.906867 CCTTTTCTTTATAGGAATTGAGATGCA 58.093 33.333 0.00 0.00 0.00 3.96
137 141 9.125026 TCCTTTTCTTTATAGGAATTGAGATGC 57.875 33.333 0.00 0.00 35.20 3.91
142 146 9.973661 TGACATCCTTTTCTTTATAGGAATTGA 57.026 29.630 0.00 0.00 41.18 2.57
147 151 9.973661 TCAAATGACATCCTTTTCTTTATAGGA 57.026 29.630 0.00 0.00 41.99 2.94
151 155 8.533657 TGCATCAAATGACATCCTTTTCTTTAT 58.466 29.630 0.00 0.00 0.00 1.40
152 156 7.814107 GTGCATCAAATGACATCCTTTTCTTTA 59.186 33.333 0.00 0.00 0.00 1.85
153 157 6.647895 GTGCATCAAATGACATCCTTTTCTTT 59.352 34.615 0.00 0.00 0.00 2.52
154 158 6.161381 GTGCATCAAATGACATCCTTTTCTT 58.839 36.000 0.00 0.00 0.00 2.52
155 159 5.244402 TGTGCATCAAATGACATCCTTTTCT 59.756 36.000 0.00 0.00 0.00 2.52
156 160 5.472148 TGTGCATCAAATGACATCCTTTTC 58.528 37.500 0.00 0.00 0.00 2.29
157 161 5.471556 TGTGCATCAAATGACATCCTTTT 57.528 34.783 0.00 0.00 0.00 2.27
158 162 4.081862 CCTGTGCATCAAATGACATCCTTT 60.082 41.667 0.00 0.00 0.00 3.11
159 163 3.446161 CCTGTGCATCAAATGACATCCTT 59.554 43.478 0.00 0.00 0.00 3.36
160 164 3.021695 CCTGTGCATCAAATGACATCCT 58.978 45.455 0.00 0.00 0.00 3.24
161 165 3.018856 TCCTGTGCATCAAATGACATCC 58.981 45.455 0.00 0.00 0.00 3.51
162 166 4.913335 ATCCTGTGCATCAAATGACATC 57.087 40.909 0.00 0.00 0.00 3.06
163 167 4.825634 CCTATCCTGTGCATCAAATGACAT 59.174 41.667 0.00 0.00 0.00 3.06
164 168 4.080413 TCCTATCCTGTGCATCAAATGACA 60.080 41.667 0.00 0.00 0.00 3.58
165 169 4.454678 TCCTATCCTGTGCATCAAATGAC 58.545 43.478 0.00 0.00 0.00 3.06
166 170 4.164796 ACTCCTATCCTGTGCATCAAATGA 59.835 41.667 0.00 0.00 0.00 2.57
167 171 4.458397 ACTCCTATCCTGTGCATCAAATG 58.542 43.478 0.00 0.00 0.00 2.32
168 172 4.785346 ACTCCTATCCTGTGCATCAAAT 57.215 40.909 0.00 0.00 0.00 2.32
169 173 4.574674 AACTCCTATCCTGTGCATCAAA 57.425 40.909 0.00 0.00 0.00 2.69
170 174 4.574674 AAACTCCTATCCTGTGCATCAA 57.425 40.909 0.00 0.00 0.00 2.57
171 175 4.574674 AAAACTCCTATCCTGTGCATCA 57.425 40.909 0.00 0.00 0.00 3.07
223 227 8.611654 AAAAATCAATCCTTCACATTTTGGAG 57.388 30.769 0.00 0.00 31.59 3.86
265 269 9.935477 GCCATTTGGTTTGTAGGAATGGATTCC 62.935 44.444 15.46 10.03 46.06 3.01
266 270 6.340522 CCATTTGGTTTGTAGGAATGGATTC 58.659 40.000 7.46 0.00 46.06 2.52
267 271 5.338300 GCCATTTGGTTTGTAGGAATGGATT 60.338 40.000 15.46 0.00 46.06 3.01
268 272 4.162131 GCCATTTGGTTTGTAGGAATGGAT 59.838 41.667 15.46 0.00 46.06 3.41
269 273 3.513515 GCCATTTGGTTTGTAGGAATGGA 59.486 43.478 15.46 0.00 46.06 3.41
270 274 3.369366 GGCCATTTGGTTTGTAGGAATGG 60.369 47.826 0.00 8.63 45.96 3.16
271 275 3.515104 AGGCCATTTGGTTTGTAGGAATG 59.485 43.478 5.01 0.00 37.57 2.67
272 276 3.515104 CAGGCCATTTGGTTTGTAGGAAT 59.485 43.478 5.01 0.00 37.57 3.01
273 277 2.896685 CAGGCCATTTGGTTTGTAGGAA 59.103 45.455 5.01 0.00 37.57 3.36
274 278 2.109128 TCAGGCCATTTGGTTTGTAGGA 59.891 45.455 5.01 0.00 37.57 2.94
275 279 2.524306 TCAGGCCATTTGGTTTGTAGG 58.476 47.619 5.01 0.00 37.57 3.18
276 280 4.280677 TCTTTCAGGCCATTTGGTTTGTAG 59.719 41.667 5.01 0.00 37.57 2.74
277 281 4.219115 TCTTTCAGGCCATTTGGTTTGTA 58.781 39.130 5.01 0.00 37.57 2.41
278 282 3.037549 TCTTTCAGGCCATTTGGTTTGT 58.962 40.909 5.01 0.00 37.57 2.83
279 283 3.749665 TCTTTCAGGCCATTTGGTTTG 57.250 42.857 5.01 0.00 37.57 2.93
280 284 4.769345 TTTCTTTCAGGCCATTTGGTTT 57.231 36.364 5.01 0.00 37.57 3.27
281 285 4.769345 TTTTCTTTCAGGCCATTTGGTT 57.231 36.364 5.01 0.00 37.57 3.67
282 286 4.980339 ATTTTCTTTCAGGCCATTTGGT 57.020 36.364 5.01 0.00 37.57 3.67
283 287 6.294120 GGAAAATTTTCTTTCAGGCCATTTGG 60.294 38.462 25.86 0.00 37.09 3.28
284 288 6.487668 AGGAAAATTTTCTTTCAGGCCATTTG 59.512 34.615 25.86 0.00 37.09 2.32
285 289 6.487668 CAGGAAAATTTTCTTTCAGGCCATTT 59.512 34.615 25.86 0.00 37.09 2.32
286 290 5.999600 CAGGAAAATTTTCTTTCAGGCCATT 59.000 36.000 25.86 0.00 37.09 3.16
287 291 5.072193 ACAGGAAAATTTTCTTTCAGGCCAT 59.928 36.000 25.86 2.47 37.09 4.40
288 292 4.408596 ACAGGAAAATTTTCTTTCAGGCCA 59.591 37.500 25.86 0.00 37.09 5.36
289 293 4.751600 CACAGGAAAATTTTCTTTCAGGCC 59.248 41.667 25.86 10.98 37.09 5.19
290 294 4.212004 GCACAGGAAAATTTTCTTTCAGGC 59.788 41.667 25.86 18.55 37.09 4.85
291 295 5.358922 TGCACAGGAAAATTTTCTTTCAGG 58.641 37.500 25.86 12.19 37.09 3.86
292 296 6.907206 TTGCACAGGAAAATTTTCTTTCAG 57.093 33.333 25.86 12.49 37.09 3.02
293 297 7.769970 AGATTTGCACAGGAAAATTTTCTTTCA 59.230 29.630 25.86 14.95 37.09 2.69
294 298 8.146479 AGATTTGCACAGGAAAATTTTCTTTC 57.854 30.769 25.86 13.51 32.16 2.62
295 299 8.510243 AAGATTTGCACAGGAAAATTTTCTTT 57.490 26.923 25.86 14.49 32.16 2.52
296 300 9.783081 ATAAGATTTGCACAGGAAAATTTTCTT 57.217 25.926 25.86 18.47 32.16 2.52
297 301 9.428097 GATAAGATTTGCACAGGAAAATTTTCT 57.572 29.630 25.86 12.41 32.16 2.52
298 302 8.659491 GGATAAGATTTGCACAGGAAAATTTTC 58.341 33.333 20.51 20.51 32.16 2.29
299 303 8.377799 AGGATAAGATTTGCACAGGAAAATTTT 58.622 29.630 2.28 2.28 32.16 1.82
300 304 7.910584 AGGATAAGATTTGCACAGGAAAATTT 58.089 30.769 0.00 0.00 32.16 1.82
301 305 7.486407 AGGATAAGATTTGCACAGGAAAATT 57.514 32.000 0.00 0.00 32.16 1.82
302 306 8.773033 ATAGGATAAGATTTGCACAGGAAAAT 57.227 30.769 0.00 0.00 34.84 1.82
303 307 9.342308 CTATAGGATAAGATTTGCACAGGAAAA 57.658 33.333 0.00 0.00 0.00 2.29
304 308 8.713971 TCTATAGGATAAGATTTGCACAGGAAA 58.286 33.333 0.00 0.00 0.00 3.13
305 309 8.262601 TCTATAGGATAAGATTTGCACAGGAA 57.737 34.615 0.00 0.00 0.00 3.36
306 310 7.855784 TCTATAGGATAAGATTTGCACAGGA 57.144 36.000 0.00 0.00 0.00 3.86
307 311 8.908786 TTTCTATAGGATAAGATTTGCACAGG 57.091 34.615 0.00 0.00 0.00 4.00
309 313 9.507329 GGATTTCTATAGGATAAGATTTGCACA 57.493 33.333 0.00 0.00 0.00 4.57
310 314 9.732130 AGGATTTCTATAGGATAAGATTTGCAC 57.268 33.333 0.00 0.00 0.00 4.57
328 332 9.628500 GGTTTGTAGGAATGTTATAGGATTTCT 57.372 33.333 0.00 0.00 0.00 2.52
329 333 9.403583 TGGTTTGTAGGAATGTTATAGGATTTC 57.596 33.333 0.00 0.00 0.00 2.17
330 334 9.762381 TTGGTTTGTAGGAATGTTATAGGATTT 57.238 29.630 0.00 0.00 0.00 2.17
331 335 9.762381 TTTGGTTTGTAGGAATGTTATAGGATT 57.238 29.630 0.00 0.00 0.00 3.01
332 336 9.185680 GTTTGGTTTGTAGGAATGTTATAGGAT 57.814 33.333 0.00 0.00 0.00 3.24
333 337 7.612633 GGTTTGGTTTGTAGGAATGTTATAGGA 59.387 37.037 0.00 0.00 0.00 2.94
334 338 7.394923 TGGTTTGGTTTGTAGGAATGTTATAGG 59.605 37.037 0.00 0.00 0.00 2.57
335 339 8.343168 TGGTTTGGTTTGTAGGAATGTTATAG 57.657 34.615 0.00 0.00 0.00 1.31
336 340 8.707796 TTGGTTTGGTTTGTAGGAATGTTATA 57.292 30.769 0.00 0.00 0.00 0.98
337 341 7.604657 TTGGTTTGGTTTGTAGGAATGTTAT 57.395 32.000 0.00 0.00 0.00 1.89
338 342 7.418025 CCTTTGGTTTGGTTTGTAGGAATGTTA 60.418 37.037 0.00 0.00 0.00 2.41
339 343 5.941555 TTGGTTTGGTTTGTAGGAATGTT 57.058 34.783 0.00 0.00 0.00 2.71
340 344 5.163353 CCTTTGGTTTGGTTTGTAGGAATGT 60.163 40.000 0.00 0.00 0.00 2.71
341 345 5.069781 TCCTTTGGTTTGGTTTGTAGGAATG 59.930 40.000 0.00 0.00 0.00 2.67
342 346 5.212745 TCCTTTGGTTTGGTTTGTAGGAAT 58.787 37.500 0.00 0.00 0.00 3.01
343 347 4.611367 TCCTTTGGTTTGGTTTGTAGGAA 58.389 39.130 0.00 0.00 0.00 3.36
344 348 4.211920 CTCCTTTGGTTTGGTTTGTAGGA 58.788 43.478 0.00 0.00 0.00 2.94
345 349 3.320826 CCTCCTTTGGTTTGGTTTGTAGG 59.679 47.826 0.00 0.00 0.00 3.18
346 350 3.243737 GCCTCCTTTGGTTTGGTTTGTAG 60.244 47.826 0.00 0.00 0.00 2.74
347 351 2.696187 GCCTCCTTTGGTTTGGTTTGTA 59.304 45.455 0.00 0.00 0.00 2.41
348 352 1.484653 GCCTCCTTTGGTTTGGTTTGT 59.515 47.619 0.00 0.00 0.00 2.83
349 353 1.202639 GGCCTCCTTTGGTTTGGTTTG 60.203 52.381 0.00 0.00 0.00 2.93
350 354 1.128200 GGCCTCCTTTGGTTTGGTTT 58.872 50.000 0.00 0.00 0.00 3.27
351 355 0.264657 AGGCCTCCTTTGGTTTGGTT 59.735 50.000 0.00 0.00 0.00 3.67
352 356 1.154430 TAGGCCTCCTTTGGTTTGGT 58.846 50.000 9.68 0.00 34.61 3.67
353 357 2.302587 TTAGGCCTCCTTTGGTTTGG 57.697 50.000 9.68 0.00 34.61 3.28
354 358 3.230976 ACTTTAGGCCTCCTTTGGTTTG 58.769 45.455 9.68 0.00 34.61 2.93
355 359 3.612795 ACTTTAGGCCTCCTTTGGTTT 57.387 42.857 9.68 0.00 34.61 3.27
356 360 3.230976 CAACTTTAGGCCTCCTTTGGTT 58.769 45.455 9.68 4.56 34.61 3.67
357 361 2.876581 CAACTTTAGGCCTCCTTTGGT 58.123 47.619 9.68 0.00 34.61 3.67
358 362 1.546029 GCAACTTTAGGCCTCCTTTGG 59.454 52.381 9.68 0.00 34.61 3.28
359 363 1.546029 GGCAACTTTAGGCCTCCTTTG 59.454 52.381 9.68 10.27 46.74 2.77
360 364 1.924731 GGCAACTTTAGGCCTCCTTT 58.075 50.000 9.68 0.00 46.74 3.11
361 365 3.672066 GGCAACTTTAGGCCTCCTT 57.328 52.632 9.68 0.00 46.74 3.36
367 371 2.295909 TGTCAACATGGCAACTTTAGGC 59.704 45.455 0.00 0.00 37.61 3.93
368 372 3.057315 CCTGTCAACATGGCAACTTTAGG 60.057 47.826 0.00 0.00 28.17 2.69
369 373 3.569701 ACCTGTCAACATGGCAACTTTAG 59.430 43.478 0.00 0.00 28.17 1.85
370 374 3.561143 ACCTGTCAACATGGCAACTTTA 58.439 40.909 0.00 0.00 28.17 1.85
371 375 2.362077 GACCTGTCAACATGGCAACTTT 59.638 45.455 0.00 0.00 28.17 2.66
372 376 1.956477 GACCTGTCAACATGGCAACTT 59.044 47.619 0.00 0.00 28.17 2.66
373 377 1.133823 TGACCTGTCAACATGGCAACT 60.134 47.619 0.00 0.00 36.53 3.16
374 378 1.001378 GTGACCTGTCAACATGGCAAC 60.001 52.381 0.75 0.00 41.85 4.17
375 379 1.317613 GTGACCTGTCAACATGGCAA 58.682 50.000 0.75 0.00 41.85 4.52
376 380 0.884259 CGTGACCTGTCAACATGGCA 60.884 55.000 0.75 0.00 41.85 4.92
377 381 0.602638 TCGTGACCTGTCAACATGGC 60.603 55.000 0.75 0.00 41.85 4.40
378 382 1.733912 CATCGTGACCTGTCAACATGG 59.266 52.381 0.75 0.00 41.85 3.66
379 383 2.413112 GACATCGTGACCTGTCAACATG 59.587 50.000 14.03 14.03 41.85 3.21
380 384 2.037121 TGACATCGTGACCTGTCAACAT 59.963 45.455 11.74 0.00 46.41 2.71
401 405 4.627467 CGTATAGTGCTGTCAAGAAAGCTT 59.373 41.667 13.05 0.00 40.21 3.74
441 449 8.883731 ACTATATTTAGTCTGTTGATTGCACAC 58.116 33.333 0.00 0.00 33.18 3.82
458 466 9.713713 TGTTGGCATTATTCGCTACTATATTTA 57.286 29.630 0.00 0.00 0.00 1.40
510 522 6.907961 ACCACATGATGTACTAGTAGGAGTA 58.092 40.000 1.87 0.00 0.00 2.59
511 523 5.767670 ACCACATGATGTACTAGTAGGAGT 58.232 41.667 1.87 0.00 0.00 3.85
512 524 7.225011 TCTACCACATGATGTACTAGTAGGAG 58.775 42.308 16.99 0.00 0.00 3.69
513 525 7.145474 TCTACCACATGATGTACTAGTAGGA 57.855 40.000 16.99 0.00 0.00 2.94
516 528 9.910267 TTACTTCTACCACATGATGTACTAGTA 57.090 33.333 0.00 0.00 0.00 1.82
517 529 8.818622 TTACTTCTACCACATGATGTACTAGT 57.181 34.615 0.00 0.00 0.00 2.57
519 531 9.416284 TGATTACTTCTACCACATGATGTACTA 57.584 33.333 0.00 0.00 0.00 1.82
520 532 8.306313 TGATTACTTCTACCACATGATGTACT 57.694 34.615 0.00 0.00 0.00 2.73
521 533 8.982685 CATGATTACTTCTACCACATGATGTAC 58.017 37.037 0.00 0.00 36.70 2.90
533 545 5.745514 CACTGCATGCATGATTACTTCTAC 58.254 41.667 30.64 8.66 0.00 2.59
550 562 2.693074 TCCTATCGATAAGTGCACTGCA 59.307 45.455 22.49 12.23 35.60 4.41
551 563 3.371102 TCCTATCGATAAGTGCACTGC 57.629 47.619 22.49 12.13 0.00 4.40
552 564 5.532557 TGATTCCTATCGATAAGTGCACTG 58.467 41.667 22.49 7.96 33.23 3.66
553 565 5.791336 TGATTCCTATCGATAAGTGCACT 57.209 39.130 15.25 15.25 33.23 4.40
585 597 4.251268 GGTTGCCGAGTTAAGTCACTATT 58.749 43.478 10.83 0.00 0.00 1.73
589 601 1.154197 GGGTTGCCGAGTTAAGTCAC 58.846 55.000 10.83 2.67 0.00 3.67
600 612 1.146263 GGACCTATCAGGGTTGCCG 59.854 63.158 0.00 0.00 40.58 5.69
667 683 4.994217 TGAACAACAGCAAGAATCGACATA 59.006 37.500 0.00 0.00 0.00 2.29
668 684 3.814842 TGAACAACAGCAAGAATCGACAT 59.185 39.130 0.00 0.00 0.00 3.06
669 685 3.002246 GTGAACAACAGCAAGAATCGACA 59.998 43.478 0.00 0.00 0.00 4.35
671 687 3.202097 TGTGAACAACAGCAAGAATCGA 58.798 40.909 0.00 0.00 33.78 3.59
672 688 3.607422 TGTGAACAACAGCAAGAATCG 57.393 42.857 0.00 0.00 33.78 3.34
765 781 9.525409 GGAGCGTTGAATCTAAAAATAGTAGTA 57.475 33.333 0.00 0.00 0.00 1.82
766 782 7.494952 GGGAGCGTTGAATCTAAAAATAGTAGT 59.505 37.037 0.00 0.00 0.00 2.73
767 783 7.711339 AGGGAGCGTTGAATCTAAAAATAGTAG 59.289 37.037 0.00 0.00 0.00 2.57
768 784 7.562135 AGGGAGCGTTGAATCTAAAAATAGTA 58.438 34.615 0.00 0.00 0.00 1.82
769 785 6.415573 AGGGAGCGTTGAATCTAAAAATAGT 58.584 36.000 0.00 0.00 0.00 2.12
770 786 6.927294 AGGGAGCGTTGAATCTAAAAATAG 57.073 37.500 0.00 0.00 0.00 1.73
771 787 8.795842 TTAAGGGAGCGTTGAATCTAAAAATA 57.204 30.769 0.00 0.00 0.00 1.40
772 788 7.393515 ACTTAAGGGAGCGTTGAATCTAAAAAT 59.606 33.333 7.53 0.00 0.00 1.82
773 789 6.713450 ACTTAAGGGAGCGTTGAATCTAAAAA 59.287 34.615 7.53 0.00 0.00 1.94
795 811 9.696917 CATGGCTTTGATTTTAGTTTAAGACTT 57.303 29.630 0.00 0.00 39.86 3.01
820 836 1.687660 GCTCAGCTCAGAGATGGATCA 59.312 52.381 15.73 0.00 37.87 2.92
821 837 1.965643 AGCTCAGCTCAGAGATGGATC 59.034 52.381 15.73 5.41 37.87 3.36
822 838 1.689813 CAGCTCAGCTCAGAGATGGAT 59.310 52.381 15.73 2.66 45.64 3.41
823 839 1.112950 CAGCTCAGCTCAGAGATGGA 58.887 55.000 15.73 2.17 45.64 3.41
824 840 3.671262 CAGCTCAGCTCAGAGATGG 57.329 57.895 15.73 7.69 45.64 3.51
826 842 2.093553 GGAAACAGCTCAGCTCAGAGAT 60.094 50.000 0.00 0.00 36.40 2.75
827 843 1.274728 GGAAACAGCTCAGCTCAGAGA 59.725 52.381 0.00 0.00 36.40 3.10
828 844 1.724429 GGAAACAGCTCAGCTCAGAG 58.276 55.000 0.00 0.00 36.40 3.35
829 845 0.037882 CGGAAACAGCTCAGCTCAGA 60.038 55.000 0.00 0.00 36.40 3.27
830 846 0.320247 ACGGAAACAGCTCAGCTCAG 60.320 55.000 0.00 0.00 36.40 3.35
831 847 0.601046 CACGGAAACAGCTCAGCTCA 60.601 55.000 0.00 0.00 36.40 4.26
832 848 1.294659 CCACGGAAACAGCTCAGCTC 61.295 60.000 0.00 0.00 36.40 4.09
833 849 1.302033 CCACGGAAACAGCTCAGCT 60.302 57.895 0.00 0.00 40.77 4.24
834 850 2.328099 CCCACGGAAACAGCTCAGC 61.328 63.158 0.00 0.00 0.00 4.26
835 851 0.036010 ATCCCACGGAAACAGCTCAG 60.036 55.000 0.00 0.00 34.34 3.35
836 852 0.321564 CATCCCACGGAAACAGCTCA 60.322 55.000 0.00 0.00 34.34 4.26
837 853 0.036388 TCATCCCACGGAAACAGCTC 60.036 55.000 0.00 0.00 34.34 4.09
838 854 0.620556 ATCATCCCACGGAAACAGCT 59.379 50.000 0.00 0.00 34.34 4.24
839 855 1.017387 GATCATCCCACGGAAACAGC 58.983 55.000 0.00 0.00 34.34 4.40
840 856 2.401583 TGATCATCCCACGGAAACAG 57.598 50.000 0.00 0.00 34.34 3.16
841 857 2.238395 TCATGATCATCCCACGGAAACA 59.762 45.455 4.86 0.00 34.34 2.83
842 858 2.917933 TCATGATCATCCCACGGAAAC 58.082 47.619 4.86 0.00 34.34 2.78
843 859 3.643199 TTCATGATCATCCCACGGAAA 57.357 42.857 4.86 0.00 34.34 3.13
844 860 3.136260 TCATTCATGATCATCCCACGGAA 59.864 43.478 4.86 5.82 34.34 4.30
845 861 2.705127 TCATTCATGATCATCCCACGGA 59.295 45.455 4.86 0.00 35.55 4.69
846 862 3.130280 TCATTCATGATCATCCCACGG 57.870 47.619 4.86 0.00 0.00 4.94
847 863 3.058432 GCTTCATTCATGATCATCCCACG 60.058 47.826 4.86 0.00 36.56 4.94
848 864 4.142790 AGCTTCATTCATGATCATCCCAC 58.857 43.478 4.86 0.00 36.56 4.61
849 865 4.448720 AGCTTCATTCATGATCATCCCA 57.551 40.909 4.86 0.00 36.56 4.37
850 866 4.395542 GCTAGCTTCATTCATGATCATCCC 59.604 45.833 7.70 0.00 36.56 3.85
851 867 5.001874 TGCTAGCTTCATTCATGATCATCC 58.998 41.667 17.23 0.00 36.56 3.51
852 868 5.701750 AGTGCTAGCTTCATTCATGATCATC 59.298 40.000 17.23 0.00 36.56 2.92
853 869 5.622180 AGTGCTAGCTTCATTCATGATCAT 58.378 37.500 17.23 1.18 36.56 2.45
854 870 5.032327 AGTGCTAGCTTCATTCATGATCA 57.968 39.130 17.23 0.00 36.56 2.92
901 917 3.660501 CTAGTTATAGCACCGGCATCA 57.339 47.619 0.00 0.00 44.61 3.07
938 954 2.503331 CTATGGTGGTGTGTGCTTTGA 58.497 47.619 0.00 0.00 0.00 2.69
948 970 0.529337 CGAGCTCTGCTATGGTGGTG 60.529 60.000 12.85 0.00 39.88 4.17
981 1003 5.132502 TCCATCTGTTTCTTCTTTTGCTGA 58.867 37.500 0.00 0.00 0.00 4.26
982 1004 5.240183 TCTCCATCTGTTTCTTCTTTTGCTG 59.760 40.000 0.00 0.00 0.00 4.41
983 1005 5.380043 TCTCCATCTGTTTCTTCTTTTGCT 58.620 37.500 0.00 0.00 0.00 3.91
984 1006 5.695851 TCTCCATCTGTTTCTTCTTTTGC 57.304 39.130 0.00 0.00 0.00 3.68
985 1007 8.975439 CATTTTCTCCATCTGTTTCTTCTTTTG 58.025 33.333 0.00 0.00 0.00 2.44
986 1008 8.146412 CCATTTTCTCCATCTGTTTCTTCTTTT 58.854 33.333 0.00 0.00 0.00 2.27
987 1009 7.506938 TCCATTTTCTCCATCTGTTTCTTCTTT 59.493 33.333 0.00 0.00 0.00 2.52
988 1010 7.006509 TCCATTTTCTCCATCTGTTTCTTCTT 58.993 34.615 0.00 0.00 0.00 2.52
1041 1063 4.020617 TCCACAGGCAGCGGGAAG 62.021 66.667 0.00 0.00 0.00 3.46
1540 1562 2.838386 TCGTAGACGAGTGGCATTAC 57.162 50.000 0.00 0.00 44.22 1.89
1777 1799 0.099082 CCGTAGAGGAGCACGAAGAC 59.901 60.000 0.00 0.00 45.00 3.01
2334 2356 3.047877 CCGACGTTGGCTGGGAAC 61.048 66.667 9.42 0.00 0.00 3.62
2515 2537 4.119556 TGGGTACATTTCAATCCAACCA 57.880 40.909 0.00 0.00 0.00 3.67
2532 2554 2.360801 CGTGTCATCCTTGTTTTTGGGT 59.639 45.455 0.00 0.00 0.00 4.51
2541 2563 2.069273 GACCAAGACGTGTCATCCTTG 58.931 52.381 0.00 0.00 36.64 3.61
2549 2571 0.240411 GCTAGTCGACCAAGACGTGT 59.760 55.000 13.01 0.00 45.26 4.49
2628 2650 7.441890 TGAAGATAGTTTTGGCGTTTAATGA 57.558 32.000 0.00 0.00 0.00 2.57
2629 2651 8.586273 CATTGAAGATAGTTTTGGCGTTTAATG 58.414 33.333 0.00 0.00 0.00 1.90
2630 2652 7.759433 CCATTGAAGATAGTTTTGGCGTTTAAT 59.241 33.333 0.00 0.00 0.00 1.40
2632 2654 6.431543 TCCATTGAAGATAGTTTTGGCGTTTA 59.568 34.615 0.00 0.00 0.00 2.01
2633 2655 5.242838 TCCATTGAAGATAGTTTTGGCGTTT 59.757 36.000 0.00 0.00 0.00 3.60
2634 2656 4.764823 TCCATTGAAGATAGTTTTGGCGTT 59.235 37.500 0.00 0.00 0.00 4.84
2635 2657 4.331968 TCCATTGAAGATAGTTTTGGCGT 58.668 39.130 0.00 0.00 0.00 5.68
2636 2658 4.963276 TCCATTGAAGATAGTTTTGGCG 57.037 40.909 0.00 0.00 0.00 5.69
2637 2659 7.922811 CCTTATTCCATTGAAGATAGTTTTGGC 59.077 37.037 0.00 0.00 33.05 4.52
2638 2660 9.189156 TCCTTATTCCATTGAAGATAGTTTTGG 57.811 33.333 0.00 0.00 33.05 3.28
2725 2747 3.586429 TCCCACATCATAGACTGCCATA 58.414 45.455 0.00 0.00 0.00 2.74
2808 2830 8.637099 TGAGGATTGTTATCTCAAGATAGACAG 58.363 37.037 0.37 0.00 38.18 3.51
2852 2877 1.555967 AGGCAAATATTGGTGCGGTT 58.444 45.000 6.13 0.00 41.85 4.44
2874 2899 0.107654 AGCCTCATAGCAACGTTCCC 60.108 55.000 0.00 0.00 34.23 3.97
2884 2924 4.647564 ATCAATAACCCCAGCCTCATAG 57.352 45.455 0.00 0.00 0.00 2.23
2886 2926 5.792712 ACTATATCAATAACCCCAGCCTCAT 59.207 40.000 0.00 0.00 0.00 2.90
2949 4556 1.238439 CGGTTGAGGCACTGTGAATT 58.762 50.000 12.86 0.00 41.55 2.17
2964 4571 2.046314 CTTCCGGTGGATGCGGTT 60.046 61.111 0.00 0.00 0.00 4.44
2976 4583 5.211174 CCCTAGTAATTAAGGGTCTTCCG 57.789 47.826 12.55 0.00 46.45 4.30
2988 4595 2.185387 ACTGGCACGTCCCTAGTAATT 58.815 47.619 0.00 0.00 0.00 1.40
2990 4597 2.372264 CTACTGGCACGTCCCTAGTAA 58.628 52.381 0.00 0.00 0.00 2.24
2992 4599 0.683504 CCTACTGGCACGTCCCTAGT 60.684 60.000 0.00 1.34 0.00 2.57
2993 4600 2.116383 CCTACTGGCACGTCCCTAG 58.884 63.158 0.00 0.00 0.00 3.02
2994 4601 4.349682 CCTACTGGCACGTCCCTA 57.650 61.111 0.00 0.00 0.00 3.53
3013 4620 0.693049 GGTTCGGGGGCTGATGATAT 59.307 55.000 0.00 0.00 0.00 1.63
3029 4636 2.850695 ATAACCTCCTCTCCTCGGTT 57.149 50.000 0.00 0.00 42.10 4.44
3030 4637 3.054576 TCTATAACCTCCTCTCCTCGGT 58.945 50.000 0.00 0.00 0.00 4.69
3034 4641 4.321282 AGTCCTCTATAACCTCCTCTCCT 58.679 47.826 0.00 0.00 0.00 3.69
3049 4656 2.289694 CCGTCATTGGTCAAAGTCCTCT 60.290 50.000 0.00 0.00 0.00 3.69
3060 4667 1.302511 GGCACTGTCCGTCATTGGT 60.303 57.895 0.00 0.00 0.00 3.67
3099 4714 3.058914 GTGACCTTGATCAAAACAGACCG 60.059 47.826 9.88 0.00 0.00 4.79
3111 4726 5.359194 AGGATTATTGTCGTGACCTTGAT 57.641 39.130 0.00 0.00 0.00 2.57
3115 4730 3.430374 CGGAAGGATTATTGTCGTGACCT 60.430 47.826 0.00 0.00 0.00 3.85
3139 4754 6.505044 AACAAAGTTTTCGTAAGTGAACCT 57.495 33.333 0.00 0.00 35.10 3.50
3140 4755 6.408898 CGTAACAAAGTTTTCGTAAGTGAACC 59.591 38.462 0.00 0.00 35.10 3.62
3147 4762 7.691877 GGAAAAGTCGTAACAAAGTTTTCGTAA 59.308 33.333 8.50 0.00 42.07 3.18
3157 4772 6.762702 AAGGAAAGGAAAAGTCGTAACAAA 57.237 33.333 0.00 0.00 0.00 2.83
3164 4779 9.774742 CTTATCATTTAAGGAAAGGAAAAGTCG 57.225 33.333 0.00 0.00 38.72 4.18
3205 4820 9.141400 GGGCATAAAATTTAAACACGATGTTAA 57.859 29.630 0.00 0.00 40.14 2.01
3206 4821 8.524487 AGGGCATAAAATTTAAACACGATGTTA 58.476 29.630 0.00 0.00 40.14 2.41
3207 4822 7.382898 AGGGCATAAAATTTAAACACGATGTT 58.617 30.769 0.00 0.00 43.41 2.71
3208 4823 6.930731 AGGGCATAAAATTTAAACACGATGT 58.069 32.000 0.00 0.00 0.00 3.06
3209 4824 9.528018 AATAGGGCATAAAATTTAAACACGATG 57.472 29.630 0.00 0.00 0.00 3.84
3211 4826 9.360093 CAAATAGGGCATAAAATTTAAACACGA 57.640 29.630 0.00 0.00 0.00 4.35
3212 4827 9.360093 TCAAATAGGGCATAAAATTTAAACACG 57.640 29.630 0.00 0.00 0.00 4.49
3227 4842 9.420118 AGTTATTTATCAATGTCAAATAGGGCA 57.580 29.630 0.00 0.00 0.00 5.36
3249 4864 8.736244 GCTCATTGTTACATAGGGAAAAAGTTA 58.264 33.333 0.00 0.00 0.00 2.24
3250 4865 7.309805 GGCTCATTGTTACATAGGGAAAAAGTT 60.310 37.037 0.00 0.00 0.00 2.66
3251 4866 6.152831 GGCTCATTGTTACATAGGGAAAAAGT 59.847 38.462 0.00 0.00 0.00 2.66
3252 4867 6.378280 AGGCTCATTGTTACATAGGGAAAAAG 59.622 38.462 0.00 0.00 0.00 2.27
3253 4868 6.252995 AGGCTCATTGTTACATAGGGAAAAA 58.747 36.000 0.00 0.00 0.00 1.94
3254 4869 5.826643 AGGCTCATTGTTACATAGGGAAAA 58.173 37.500 0.00 0.00 0.00 2.29
3255 4870 5.450818 AGGCTCATTGTTACATAGGGAAA 57.549 39.130 0.00 0.00 0.00 3.13
3256 4871 6.569127 TTAGGCTCATTGTTACATAGGGAA 57.431 37.500 0.00 0.00 0.00 3.97
3257 4872 6.569127 TTTAGGCTCATTGTTACATAGGGA 57.431 37.500 0.00 0.00 0.00 4.20
3258 4873 7.651808 CAATTTAGGCTCATTGTTACATAGGG 58.348 38.462 10.01 0.00 0.00 3.53
3259 4874 7.141363 GCAATTTAGGCTCATTGTTACATAGG 58.859 38.462 16.59 0.00 33.58 2.57
3260 4875 6.852853 CGCAATTTAGGCTCATTGTTACATAG 59.147 38.462 16.59 0.00 33.58 2.23
3261 4876 6.238621 CCGCAATTTAGGCTCATTGTTACATA 60.239 38.462 16.59 0.00 33.58 2.29
3262 4877 5.450412 CCGCAATTTAGGCTCATTGTTACAT 60.450 40.000 16.59 0.00 33.58 2.29
3263 4878 4.142491 CCGCAATTTAGGCTCATTGTTACA 60.142 41.667 16.59 0.00 33.58 2.41
3264 4879 4.142469 ACCGCAATTTAGGCTCATTGTTAC 60.142 41.667 16.59 4.31 33.58 2.50
3265 4880 4.013728 ACCGCAATTTAGGCTCATTGTTA 58.986 39.130 16.59 0.00 33.58 2.41
3266 4881 2.825532 ACCGCAATTTAGGCTCATTGTT 59.174 40.909 16.59 4.00 33.58 2.83
3267 4882 2.423538 GACCGCAATTTAGGCTCATTGT 59.576 45.455 16.59 2.37 33.58 2.71
3268 4883 2.223572 GGACCGCAATTTAGGCTCATTG 60.224 50.000 12.80 12.80 34.09 2.82
3269 4884 2.024414 GGACCGCAATTTAGGCTCATT 58.976 47.619 0.00 0.00 0.00 2.57
3270 4885 1.680338 GGACCGCAATTTAGGCTCAT 58.320 50.000 0.00 0.00 0.00 2.90
3271 4886 0.393808 GGGACCGCAATTTAGGCTCA 60.394 55.000 0.00 0.00 0.00 4.26
3272 4887 1.436983 CGGGACCGCAATTTAGGCTC 61.437 60.000 0.00 0.00 0.00 4.70
3273 4888 1.451387 CGGGACCGCAATTTAGGCT 60.451 57.895 0.00 0.00 0.00 4.58
3274 4889 1.747745 ACGGGACCGCAATTTAGGC 60.748 57.895 11.21 0.00 44.19 3.93
3275 4890 1.988834 GCACGGGACCGCAATTTAGG 61.989 60.000 11.21 0.00 44.19 2.69
3276 4891 1.302383 TGCACGGGACCGCAATTTAG 61.302 55.000 11.21 0.00 44.19 1.85
3277 4892 0.678366 ATGCACGGGACCGCAATTTA 60.678 50.000 11.21 0.00 42.37 1.40
3278 4893 1.933115 GATGCACGGGACCGCAATTT 61.933 55.000 11.21 0.00 42.37 1.82
3279 4894 2.361104 ATGCACGGGACCGCAATT 60.361 55.556 11.21 0.00 42.37 2.32
3280 4895 2.824041 GATGCACGGGACCGCAAT 60.824 61.111 11.21 1.85 42.37 3.56
3291 4906 4.819761 TCTGAGCGGGCGATGCAC 62.820 66.667 0.00 0.00 33.85 4.57
3292 4907 3.604129 TTTCTGAGCGGGCGATGCA 62.604 57.895 0.00 0.00 33.85 3.96
3293 4908 1.922135 TTTTTCTGAGCGGGCGATGC 61.922 55.000 0.00 0.00 0.00 3.91
3294 4909 2.170738 TTTTTCTGAGCGGGCGATG 58.829 52.632 0.00 0.00 0.00 3.84
3295 4910 4.713946 TTTTTCTGAGCGGGCGAT 57.286 50.000 0.00 0.00 0.00 4.58
3309 4924 6.516693 GCTGGCTAGGTCAAATACTTGTTTTT 60.517 38.462 0.00 0.00 33.94 1.94
3310 4925 5.048013 GCTGGCTAGGTCAAATACTTGTTTT 60.048 40.000 0.00 0.00 33.94 2.43
3311 4926 4.459337 GCTGGCTAGGTCAAATACTTGTTT 59.541 41.667 0.00 0.00 33.94 2.83
3312 4927 4.010349 GCTGGCTAGGTCAAATACTTGTT 58.990 43.478 0.00 0.00 33.94 2.83
3313 4928 3.610911 GCTGGCTAGGTCAAATACTTGT 58.389 45.455 0.00 0.00 33.94 3.16
3314 4929 2.945668 GGCTGGCTAGGTCAAATACTTG 59.054 50.000 0.00 0.00 0.00 3.16
3315 4930 2.420129 CGGCTGGCTAGGTCAAATACTT 60.420 50.000 0.00 0.00 0.00 2.24
3316 4931 1.139058 CGGCTGGCTAGGTCAAATACT 59.861 52.381 0.00 0.00 0.00 2.12
3317 4932 1.583054 CGGCTGGCTAGGTCAAATAC 58.417 55.000 0.00 0.00 0.00 1.89
3318 4933 0.179056 GCGGCTGGCTAGGTCAAATA 60.179 55.000 0.00 0.00 39.11 1.40
3319 4934 1.452108 GCGGCTGGCTAGGTCAAAT 60.452 57.895 0.00 0.00 39.11 2.32
3320 4935 2.046314 GCGGCTGGCTAGGTCAAA 60.046 61.111 0.00 0.00 39.11 2.69
3321 4936 4.096003 GGCGGCTGGCTAGGTCAA 62.096 66.667 12.72 0.00 42.94 3.18
3330 4945 4.676951 TTTTGGAGGGGCGGCTGG 62.677 66.667 9.56 0.00 0.00 4.85
3331 4946 2.600173 TTTTTGGAGGGGCGGCTG 60.600 61.111 9.56 0.00 0.00 4.85
3332 4947 2.283173 CTTTTTGGAGGGGCGGCT 60.283 61.111 9.56 0.00 0.00 5.52
3333 4948 4.069232 GCTTTTTGGAGGGGCGGC 62.069 66.667 0.00 0.00 0.00 6.53
3334 4949 1.001393 TAGCTTTTTGGAGGGGCGG 60.001 57.895 0.00 0.00 0.00 6.13
3335 4950 1.032114 CCTAGCTTTTTGGAGGGGCG 61.032 60.000 0.00 0.00 0.00 6.13
3336 4951 0.684479 CCCTAGCTTTTTGGAGGGGC 60.684 60.000 8.92 0.00 44.41 5.80
3337 4952 3.596362 CCCTAGCTTTTTGGAGGGG 57.404 57.895 8.92 0.00 44.41 4.79
3339 4954 3.519913 AGAGTACCCTAGCTTTTTGGAGG 59.480 47.826 0.00 0.00 0.00 4.30
3340 4955 4.508662 CAGAGTACCCTAGCTTTTTGGAG 58.491 47.826 0.00 0.00 0.00 3.86
3341 4956 3.307480 GCAGAGTACCCTAGCTTTTTGGA 60.307 47.826 0.00 0.00 0.00 3.53
3342 4957 3.010420 GCAGAGTACCCTAGCTTTTTGG 58.990 50.000 0.00 0.00 0.00 3.28
3343 4958 3.010420 GGCAGAGTACCCTAGCTTTTTG 58.990 50.000 0.00 0.00 0.00 2.44
3344 4959 2.913617 AGGCAGAGTACCCTAGCTTTTT 59.086 45.455 0.00 0.00 0.00 1.94
3345 4960 2.502130 GAGGCAGAGTACCCTAGCTTTT 59.498 50.000 0.00 0.00 0.00 2.27
3346 4961 2.112190 GAGGCAGAGTACCCTAGCTTT 58.888 52.381 0.00 0.00 0.00 3.51
3347 4962 1.689892 GGAGGCAGAGTACCCTAGCTT 60.690 57.143 0.00 0.00 0.00 3.74
3348 4963 0.105913 GGAGGCAGAGTACCCTAGCT 60.106 60.000 0.00 0.00 0.00 3.32
3349 4964 1.116536 GGGAGGCAGAGTACCCTAGC 61.117 65.000 0.00 0.00 39.28 3.42
3350 4965 0.824182 CGGGAGGCAGAGTACCCTAG 60.824 65.000 0.00 0.00 40.12 3.02
3351 4966 1.229359 CGGGAGGCAGAGTACCCTA 59.771 63.158 0.00 0.00 40.12 3.53
3352 4967 2.042843 CGGGAGGCAGAGTACCCT 60.043 66.667 0.00 0.00 40.12 4.34
3353 4968 3.851128 GCGGGAGGCAGAGTACCC 61.851 72.222 0.00 0.00 42.87 3.69
3393 5008 1.153628 CCTAAGGCCACCGAAGACG 60.154 63.158 5.01 0.00 39.43 4.18
3394 5009 0.108281 GTCCTAAGGCCACCGAAGAC 60.108 60.000 5.01 0.00 0.00 3.01
3395 5010 1.262640 GGTCCTAAGGCCACCGAAGA 61.263 60.000 5.01 0.00 0.00 2.87
3396 5011 1.221021 GGTCCTAAGGCCACCGAAG 59.779 63.158 5.01 0.00 0.00 3.79
3397 5012 0.912487 ATGGTCCTAAGGCCACCGAA 60.912 55.000 5.01 0.00 37.62 4.30
3398 5013 1.306654 ATGGTCCTAAGGCCACCGA 60.307 57.895 5.01 0.00 37.62 4.69
3399 5014 1.153168 CATGGTCCTAAGGCCACCG 60.153 63.158 5.01 0.00 37.62 4.94
3400 5015 1.227383 CCATGGTCCTAAGGCCACC 59.773 63.158 5.01 3.33 37.62 4.61
3401 5016 0.181350 CTCCATGGTCCTAAGGCCAC 59.819 60.000 12.58 0.00 37.62 5.01
3402 5017 0.988145 CCTCCATGGTCCTAAGGCCA 60.988 60.000 12.58 1.47 39.33 5.36
3403 5018 1.839894 CCTCCATGGTCCTAAGGCC 59.160 63.158 12.58 0.00 0.00 5.19
3404 5019 1.149401 GCCTCCATGGTCCTAAGGC 59.851 63.158 21.89 21.89 45.11 4.35
3405 5020 1.447643 CGCCTCCATGGTCCTAAGG 59.552 63.158 12.58 11.86 38.35 2.69
3406 5021 1.048724 TCCGCCTCCATGGTCCTAAG 61.049 60.000 12.58 0.44 38.35 2.18
3407 5022 1.002403 TCCGCCTCCATGGTCCTAA 59.998 57.895 12.58 0.00 38.35 2.69
3408 5023 1.457643 CTCCGCCTCCATGGTCCTA 60.458 63.158 12.58 0.00 38.35 2.94
3409 5024 2.765807 CTCCGCCTCCATGGTCCT 60.766 66.667 12.58 0.00 38.35 3.85
3410 5025 3.083997 ACTCCGCCTCCATGGTCC 61.084 66.667 12.58 0.22 38.35 4.46
3411 5026 2.187946 CACTCCGCCTCCATGGTC 59.812 66.667 12.58 1.48 38.35 4.02
3412 5027 3.402681 CCACTCCGCCTCCATGGT 61.403 66.667 12.58 0.00 38.35 3.55
3413 5028 2.388890 GATCCACTCCGCCTCCATGG 62.389 65.000 4.97 4.97 39.35 3.66
3414 5029 1.070445 GATCCACTCCGCCTCCATG 59.930 63.158 0.00 0.00 0.00 3.66
3415 5030 1.074926 AGATCCACTCCGCCTCCAT 60.075 57.895 0.00 0.00 0.00 3.41
3416 5031 1.758514 GAGATCCACTCCGCCTCCA 60.759 63.158 0.00 0.00 39.53 3.86
3417 5032 2.851071 CGAGATCCACTCCGCCTCC 61.851 68.421 0.00 0.00 42.18 4.30
3418 5033 2.725008 CGAGATCCACTCCGCCTC 59.275 66.667 0.00 0.00 42.18 4.70
3419 5034 3.532155 GCGAGATCCACTCCGCCT 61.532 66.667 0.00 0.00 42.18 5.52
3421 5036 4.593864 GGGCGAGATCCACTCCGC 62.594 72.222 0.00 0.00 42.18 5.54
3422 5037 3.917760 GGGGCGAGATCCACTCCG 61.918 72.222 0.00 0.00 42.18 4.63
3423 5038 2.066999 AAGGGGCGAGATCCACTCC 61.067 63.158 0.00 0.00 39.42 3.85
3424 5039 1.144936 CAAGGGGCGAGATCCACTC 59.855 63.158 0.00 0.00 39.42 3.51
3425 5040 3.036429 GCAAGGGGCGAGATCCACT 62.036 63.158 0.00 0.00 42.97 4.00
3426 5041 2.514824 GCAAGGGGCGAGATCCAC 60.515 66.667 0.00 0.00 0.00 4.02
3427 5042 3.797353 GGCAAGGGGCGAGATCCA 61.797 66.667 0.00 0.00 46.16 3.41
3445 5060 2.708593 AAAAACGGAGCCCTCCCACC 62.709 60.000 8.68 0.00 46.96 4.61
3446 5061 0.037160 TAAAAACGGAGCCCTCCCAC 59.963 55.000 8.68 0.00 46.96 4.61
3447 5062 0.326927 CTAAAAACGGAGCCCTCCCA 59.673 55.000 8.68 0.00 46.96 4.37
3448 5063 0.616891 TCTAAAAACGGAGCCCTCCC 59.383 55.000 8.68 0.00 46.96 4.30
3449 5064 2.170817 AGATCTAAAAACGGAGCCCTCC 59.829 50.000 4.19 4.19 46.18 4.30
3450 5065 3.545366 AGATCTAAAAACGGAGCCCTC 57.455 47.619 0.00 0.00 0.00 4.30
3451 5066 4.302559 AAAGATCTAAAAACGGAGCCCT 57.697 40.909 0.00 0.00 0.00 5.19
3452 5067 5.386958 AAAAAGATCTAAAAACGGAGCCC 57.613 39.130 0.00 0.00 0.00 5.19
3473 5088 7.011202 GGACGCAAACCCTAACAAAAATAAAAA 59.989 33.333 0.00 0.00 0.00 1.94
3474 5089 6.479331 GGACGCAAACCCTAACAAAAATAAAA 59.521 34.615 0.00 0.00 0.00 1.52
3475 5090 5.984323 GGACGCAAACCCTAACAAAAATAAA 59.016 36.000 0.00 0.00 0.00 1.40
3476 5091 5.302313 AGGACGCAAACCCTAACAAAAATAA 59.698 36.000 0.00 0.00 0.00 1.40
3477 5092 4.828387 AGGACGCAAACCCTAACAAAAATA 59.172 37.500 0.00 0.00 0.00 1.40
3478 5093 3.639561 AGGACGCAAACCCTAACAAAAAT 59.360 39.130 0.00 0.00 0.00 1.82
3479 5094 3.025262 AGGACGCAAACCCTAACAAAAA 58.975 40.909 0.00 0.00 0.00 1.94
3480 5095 2.657143 AGGACGCAAACCCTAACAAAA 58.343 42.857 0.00 0.00 0.00 2.44
3481 5096 2.351706 AGGACGCAAACCCTAACAAA 57.648 45.000 0.00 0.00 0.00 2.83
3482 5097 2.369532 AGTAGGACGCAAACCCTAACAA 59.630 45.455 0.00 0.00 36.84 2.83
3483 5098 1.972795 AGTAGGACGCAAACCCTAACA 59.027 47.619 0.00 0.00 36.84 2.41
3484 5099 2.028748 TGAGTAGGACGCAAACCCTAAC 60.029 50.000 0.00 0.00 36.84 2.34
3485 5100 2.232941 CTGAGTAGGACGCAAACCCTAA 59.767 50.000 0.00 0.00 36.84 2.69
3486 5101 1.822990 CTGAGTAGGACGCAAACCCTA 59.177 52.381 0.00 0.00 34.11 3.53
3487 5102 0.608640 CTGAGTAGGACGCAAACCCT 59.391 55.000 0.00 0.00 36.60 4.34
3488 5103 3.139029 CTGAGTAGGACGCAAACCC 57.861 57.895 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.