Multiple sequence alignment - TraesCS2A01G074300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G074300 chr2A 100.000 3947 0 0 1 3947 32771913 32775859 0.000000e+00 7289.0
1 TraesCS2A01G074300 chr2A 97.379 763 20 0 3185 3947 81461588 81462350 0.000000e+00 1299.0
2 TraesCS2A01G074300 chr2A 86.654 1064 79 28 540 1586 32553661 32554678 0.000000e+00 1120.0
3 TraesCS2A01G074300 chr2A 84.969 958 90 24 1585 2519 32554760 32555686 0.000000e+00 922.0
4 TraesCS2A01G074300 chr2A 78.226 1511 250 56 1071 2559 32863550 32865003 0.000000e+00 894.0
5 TraesCS2A01G074300 chr2A 86.667 690 66 13 1366 2038 32820869 32821549 0.000000e+00 741.0
6 TraesCS2A01G074300 chr2A 90.649 524 35 6 2036 2559 32857039 32857548 0.000000e+00 684.0
7 TraesCS2A01G074300 chr2A 80.752 878 135 21 1705 2559 32875911 32876777 0.000000e+00 654.0
8 TraesCS2A01G074300 chr2A 94.256 383 22 0 2177 2559 32818042 32818424 1.580000e-163 586.0
9 TraesCS2A01G074300 chr2A 91.975 324 24 2 2862 3185 32857615 32857936 1.670000e-123 453.0
10 TraesCS2A01G074300 chr2A 90.769 325 27 3 2862 3185 32818491 32818813 7.840000e-117 431.0
11 TraesCS2A01G074300 chr2A 89.399 283 28 1 1071 1351 32817761 32818043 4.850000e-94 355.0
12 TraesCS2A01G074300 chr2A 95.690 116 5 0 2558 2673 383353905 383354020 1.870000e-43 187.0
13 TraesCS2A01G074300 chr2A 91.150 113 9 1 2750 2862 32818417 32818528 6.830000e-33 152.0
14 TraesCS2A01G074300 chr2A 89.381 113 11 1 2750 2862 32857541 32857652 1.480000e-29 141.0
15 TraesCS2A01G074300 chr2A 85.612 139 13 3 2560 2698 26763894 26763763 5.320000e-29 139.0
16 TraesCS2A01G074300 chr2A 89.381 113 7 2 2750 2862 32578174 32578281 1.910000e-28 137.0
17 TraesCS2A01G074300 chr2A 92.857 56 4 0 877 932 32553873 32553928 9.090000e-12 82.4
18 TraesCS2A01G074300 chr2A 96.078 51 1 1 754 803 32553975 32554025 9.090000e-12 82.4
19 TraesCS2A01G074300 chr2A 92.857 56 4 0 877 932 32772662 32772717 9.090000e-12 82.4
20 TraesCS2A01G074300 chr2A 92.857 56 4 0 750 805 32772789 32772844 9.090000e-12 82.4
21 TraesCS2A01G074300 chr2D 88.915 1696 139 27 888 2559 30611522 30613192 0.000000e+00 2045.0
22 TraesCS2A01G074300 chr2D 94.350 761 37 1 3187 3947 481663079 481662325 0.000000e+00 1162.0
23 TraesCS2A01G074300 chr2D 81.367 907 135 16 1676 2559 30619248 30620143 0.000000e+00 708.0
24 TraesCS2A01G074300 chr2D 95.783 332 13 1 2862 3192 30613259 30613590 5.810000e-148 534.0
25 TraesCS2A01G074300 chr2D 86.364 396 21 7 540 932 30611015 30611380 6.140000e-108 401.0
26 TraesCS2A01G074300 chr2D 90.426 188 17 1 2560 2747 476923687 476923873 3.050000e-61 246.0
27 TraesCS2A01G074300 chr2D 88.623 167 19 0 2392 2558 402929024 402928858 1.860000e-48 204.0
28 TraesCS2A01G074300 chr2D 93.805 113 6 1 2750 2862 30613185 30613296 6.780000e-38 169.0
29 TraesCS2A01G074300 chr2D 92.500 80 6 0 1081 1160 30618660 30618739 8.960000e-22 115.0
30 TraesCS2A01G074300 chr2D 90.361 83 6 2 750 830 30611325 30611407 1.500000e-19 108.0
31 TraesCS2A01G074300 chr2D 92.857 56 4 0 877 932 30611226 30611281 9.090000e-12 82.4
32 TraesCS2A01G074300 chr2D 95.556 45 2 0 761 805 30611522 30611566 5.470000e-09 73.1
33 TraesCS2A01G074300 chr2B 95.094 1121 50 2 1442 2559 50401433 50402551 0.000000e+00 1760.0
34 TraesCS2A01G074300 chr2B 78.716 1527 247 51 1070 2559 50411169 50412654 0.000000e+00 948.0
35 TraesCS2A01G074300 chr2B 76.766 1515 256 58 1102 2563 50495303 50493832 0.000000e+00 760.0
36 TraesCS2A01G074300 chr2B 87.722 619 56 13 845 1454 50392470 50393077 0.000000e+00 704.0
37 TraesCS2A01G074300 chr2B 82.382 613 91 11 1952 2563 50524181 50523585 5.850000e-143 518.0
38 TraesCS2A01G074300 chr2B 92.000 325 25 1 2862 3185 50402618 50402942 4.650000e-124 455.0
39 TraesCS2A01G074300 chr2B 83.746 283 13 9 654 932 50392205 50392458 1.830000e-58 237.0
40 TraesCS2A01G074300 chr2B 97.345 113 2 1 2750 2862 50402544 50402655 1.450000e-44 191.0
41 TraesCS2A01G074300 chr2B 89.744 117 10 2 540 656 50365014 50365128 8.840000e-32 148.0
42 TraesCS2A01G074300 chr2B 92.208 77 3 1 750 826 50392403 50392476 5.390000e-19 106.0
43 TraesCS2A01G074300 chr2B 94.643 56 3 0 750 805 50392502 50392557 1.950000e-13 87.9
44 TraesCS2A01G074300 chr2B 92.857 56 4 0 877 932 50392304 50392359 9.090000e-12 82.4
45 TraesCS2A01G074300 chr5A 96.068 763 30 0 3185 3947 558927698 558928460 0.000000e+00 1243.0
46 TraesCS2A01G074300 chr5A 96.373 193 7 0 2559 2751 612918868 612918676 6.360000e-83 318.0
47 TraesCS2A01G074300 chr5A 100.000 30 0 0 515 544 530883254 530883225 5.510000e-04 56.5
48 TraesCS2A01G074300 chr3D 95.550 764 32 2 3185 3947 336826175 336825413 0.000000e+00 1221.0
49 TraesCS2A01G074300 chr7A 95.425 765 34 1 3184 3947 287008935 287009699 0.000000e+00 1218.0
50 TraesCS2A01G074300 chr7A 95.407 762 34 1 3186 3947 701288499 701287739 0.000000e+00 1212.0
51 TraesCS2A01G074300 chr7A 94.102 763 43 2 3185 3947 445605789 445605029 0.000000e+00 1158.0
52 TraesCS2A01G074300 chr7A 87.940 597 20 15 1 545 121942683 121942087 0.000000e+00 656.0
53 TraesCS2A01G074300 chr7A 97.238 181 5 0 2568 2748 709179315 709179135 1.380000e-79 307.0
54 TraesCS2A01G074300 chr3A 94.517 766 40 2 3183 3947 678508932 678509696 0.000000e+00 1181.0
55 TraesCS2A01G074300 chr6A 91.161 758 63 4 3187 3943 108016629 108015875 0.000000e+00 1026.0
56 TraesCS2A01G074300 chr6A 93.684 190 12 0 2560 2749 145933386 145933197 6.460000e-73 285.0
57 TraesCS2A01G074300 chr6A 92.857 42 0 2 514 552 147976665 147976624 1.530000e-04 58.4
58 TraesCS2A01G074300 chr5B 88.387 310 22 12 249 544 684896209 684896518 1.040000e-95 361.0
59 TraesCS2A01G074300 chr5B 93.488 215 11 3 1 214 684895725 684895937 2.290000e-82 316.0
60 TraesCS2A01G074300 chr1A 93.684 190 9 3 2560 2749 507822897 507823083 8.350000e-72 281.0
61 TraesCS2A01G074300 chr3B 89.637 193 20 0 2558 2750 11091484 11091676 3.050000e-61 246.0
62 TraesCS2A01G074300 chr6D 88.800 125 13 1 2560 2684 290824075 290824198 6.830000e-33 152.0
63 TraesCS2A01G074300 chr4A 100.000 31 0 0 514 544 577058206 577058176 1.530000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G074300 chr2A 32771913 32775859 3946 False 2484.60 7289 95.238000 1 3947 3 chr2A.!!$F7 3946
1 TraesCS2A01G074300 chr2A 81461588 81462350 762 False 1299.00 1299 97.379000 3185 3947 1 chr2A.!!$F4 762
2 TraesCS2A01G074300 chr2A 32863550 32865003 1453 False 894.00 894 78.226000 1071 2559 1 chr2A.!!$F2 1488
3 TraesCS2A01G074300 chr2A 32875911 32876777 866 False 654.00 654 80.752000 1705 2559 1 chr2A.!!$F3 854
4 TraesCS2A01G074300 chr2A 32553661 32555686 2025 False 551.70 1120 90.139500 540 2519 4 chr2A.!!$F6 1979
5 TraesCS2A01G074300 chr2A 32817761 32821549 3788 False 453.00 741 90.448200 1071 3185 5 chr2A.!!$F8 2114
6 TraesCS2A01G074300 chr2A 32857039 32857936 897 False 426.00 684 90.668333 2036 3185 3 chr2A.!!$F9 1149
7 TraesCS2A01G074300 chr2D 481662325 481663079 754 True 1162.00 1162 94.350000 3187 3947 1 chr2D.!!$R2 760
8 TraesCS2A01G074300 chr2D 30611015 30613590 2575 False 487.50 2045 91.948714 540 3192 7 chr2D.!!$F2 2652
9 TraesCS2A01G074300 chr2D 30618660 30620143 1483 False 411.50 708 86.933500 1081 2559 2 chr2D.!!$F3 1478
10 TraesCS2A01G074300 chr2B 50411169 50412654 1485 False 948.00 948 78.716000 1070 2559 1 chr2B.!!$F2 1489
11 TraesCS2A01G074300 chr2B 50401433 50402942 1509 False 802.00 1760 94.813000 1442 3185 3 chr2B.!!$F4 1743
12 TraesCS2A01G074300 chr2B 50493832 50495303 1471 True 760.00 760 76.766000 1102 2563 1 chr2B.!!$R1 1461
13 TraesCS2A01G074300 chr2B 50523585 50524181 596 True 518.00 518 82.382000 1952 2563 1 chr2B.!!$R2 611
14 TraesCS2A01G074300 chr2B 50392205 50393077 872 False 243.46 704 90.235200 654 1454 5 chr2B.!!$F3 800
15 TraesCS2A01G074300 chr5A 558927698 558928460 762 False 1243.00 1243 96.068000 3185 3947 1 chr5A.!!$F1 762
16 TraesCS2A01G074300 chr3D 336825413 336826175 762 True 1221.00 1221 95.550000 3185 3947 1 chr3D.!!$R1 762
17 TraesCS2A01G074300 chr7A 287008935 287009699 764 False 1218.00 1218 95.425000 3184 3947 1 chr7A.!!$F1 763
18 TraesCS2A01G074300 chr7A 701287739 701288499 760 True 1212.00 1212 95.407000 3186 3947 1 chr7A.!!$R3 761
19 TraesCS2A01G074300 chr7A 445605029 445605789 760 True 1158.00 1158 94.102000 3185 3947 1 chr7A.!!$R2 762
20 TraesCS2A01G074300 chr7A 121942087 121942683 596 True 656.00 656 87.940000 1 545 1 chr7A.!!$R1 544
21 TraesCS2A01G074300 chr3A 678508932 678509696 764 False 1181.00 1181 94.517000 3183 3947 1 chr3A.!!$F1 764
22 TraesCS2A01G074300 chr6A 108015875 108016629 754 True 1026.00 1026 91.161000 3187 3943 1 chr6A.!!$R1 756
23 TraesCS2A01G074300 chr5B 684895725 684896518 793 False 338.50 361 90.937500 1 544 2 chr5B.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1238 0.105778 GCTGGGATACACTCTGAGGC 59.894 60.0 9.85 0.00 39.74 4.70 F
2686 3362 0.179163 GTAAAACAGATGCAGCCGGC 60.179 55.0 21.89 21.89 45.13 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2738 3414 0.036164 TGTTGGGTACAGCAGCGAAT 59.964 50.0 0.00 0.0 32.57 3.34 R
3507 5582 2.106166 CCTTCTGCTTGGATGGCTATCT 59.894 50.0 10.15 0.0 33.68 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 9.606631 TTTGGTAATTTTGTTTGCAGATTTACT 57.393 25.926 0.00 0.00 31.69 2.24
141 143 4.393062 ACTTCAACATGCTACGATCTTTGG 59.607 41.667 0.00 0.00 0.00 3.28
214 216 2.632996 TCCCTGTGAGTGTTAGTTCCTG 59.367 50.000 0.00 0.00 0.00 3.86
215 217 2.368875 CCCTGTGAGTGTTAGTTCCTGT 59.631 50.000 0.00 0.00 0.00 4.00
217 219 3.069586 CCTGTGAGTGTTAGTTCCTGTGA 59.930 47.826 0.00 0.00 0.00 3.58
218 220 4.051922 CTGTGAGTGTTAGTTCCTGTGAC 58.948 47.826 0.00 0.00 0.00 3.67
219 221 3.704566 TGTGAGTGTTAGTTCCTGTGACT 59.295 43.478 0.00 0.00 0.00 3.41
222 224 6.041637 TGTGAGTGTTAGTTCCTGTGACTATT 59.958 38.462 0.00 0.00 30.30 1.73
224 226 8.086522 GTGAGTGTTAGTTCCTGTGACTATTTA 58.913 37.037 0.00 0.00 30.30 1.40
225 227 8.644216 TGAGTGTTAGTTCCTGTGACTATTTAA 58.356 33.333 0.00 0.00 30.30 1.52
226 228 9.485206 GAGTGTTAGTTCCTGTGACTATTTAAA 57.515 33.333 0.00 0.00 30.30 1.52
270 306 3.192001 TCATTCTCTGCCTGATTGTTTGC 59.808 43.478 0.00 0.00 0.00 3.68
271 307 1.159285 TCTCTGCCTGATTGTTTGCG 58.841 50.000 0.00 0.00 0.00 4.85
272 308 0.877071 CTCTGCCTGATTGTTTGCGT 59.123 50.000 0.00 0.00 0.00 5.24
273 309 0.592637 TCTGCCTGATTGTTTGCGTG 59.407 50.000 0.00 0.00 0.00 5.34
297 333 8.637986 GTGATTTATTAATGCCTTGATGGGTTA 58.362 33.333 0.00 0.00 36.00 2.85
300 336 8.774546 TTTATTAATGCCTTGATGGGTTATGA 57.225 30.769 0.00 0.00 36.00 2.15
320 356 3.058983 TGATTCTGCACTAAAGTTGCACG 60.059 43.478 0.00 0.00 34.61 5.34
327 363 0.163788 CTAAAGTTGCACGGCGTCAG 59.836 55.000 10.85 0.00 0.00 3.51
394 430 7.888021 ACAAATACATTGATGTTTCTCTGGGTA 59.112 33.333 1.46 0.00 41.85 3.69
522 575 7.627298 ATTTGATAGTAGTCTAGACGTGTGT 57.373 36.000 17.07 5.15 36.20 3.72
523 576 7.444629 TTTGATAGTAGTCTAGACGTGTGTT 57.555 36.000 17.07 1.30 36.20 3.32
524 577 6.418585 TGATAGTAGTCTAGACGTGTGTTG 57.581 41.667 17.07 0.00 36.20 3.33
525 578 3.555917 AGTAGTCTAGACGTGTGTTGC 57.444 47.619 17.07 2.61 36.20 4.17
526 579 2.882761 AGTAGTCTAGACGTGTGTTGCA 59.117 45.455 17.07 0.00 36.20 4.08
527 580 2.135664 AGTCTAGACGTGTGTTGCAC 57.864 50.000 17.07 0.00 44.36 4.57
535 588 3.142796 GTGTGTTGCACGTACAAGC 57.857 52.632 0.26 0.00 38.45 4.01
536 589 0.655733 GTGTGTTGCACGTACAAGCT 59.344 50.000 0.26 0.00 38.45 3.74
537 590 1.063469 GTGTGTTGCACGTACAAGCTT 59.937 47.619 0.26 0.00 38.45 3.74
538 591 2.285756 GTGTGTTGCACGTACAAGCTTA 59.714 45.455 0.26 0.00 38.45 3.09
539 592 2.285756 TGTGTTGCACGTACAAGCTTAC 59.714 45.455 0.26 0.00 37.14 2.34
540 593 2.542595 GTGTTGCACGTACAAGCTTACT 59.457 45.455 0.26 0.00 0.00 2.24
541 594 3.737266 GTGTTGCACGTACAAGCTTACTA 59.263 43.478 0.26 0.00 0.00 1.82
542 595 3.985279 TGTTGCACGTACAAGCTTACTAG 59.015 43.478 0.26 0.00 0.00 2.57
543 596 3.928727 TGCACGTACAAGCTTACTAGT 57.071 42.857 0.00 0.00 0.00 2.57
544 597 3.829948 TGCACGTACAAGCTTACTAGTC 58.170 45.455 0.00 0.00 0.00 2.59
562 615 0.871722 TCTCAAACAACAATCGCCGG 59.128 50.000 0.00 0.00 0.00 6.13
617 670 7.701078 CAGCTTCAATCTGGAAATTAACATCTG 59.299 37.037 0.00 0.00 0.00 2.90
623 676 3.023119 TGGAAATTAACATCTGGCGCAT 58.977 40.909 10.83 0.00 0.00 4.73
626 679 4.515191 GGAAATTAACATCTGGCGCATCTA 59.485 41.667 10.83 0.00 0.00 1.98
633 686 0.250234 TCTGGCGCATCTAGCTTTGT 59.750 50.000 10.83 0.00 42.61 2.83
641 694 3.067461 CGCATCTAGCTTTGTCTACTCCT 59.933 47.826 0.00 0.00 42.61 3.69
652 705 6.431198 TTTGTCTACTCCTGTTTTGTGTTC 57.569 37.500 0.00 0.00 0.00 3.18
663 716 5.858581 CCTGTTTTGTGTTCTATAGCTTTGC 59.141 40.000 0.00 0.00 0.00 3.68
667 722 7.040478 TGTTTTGTGTTCTATAGCTTTGCAGAT 60.040 33.333 0.00 0.00 0.00 2.90
669 724 8.560355 TTTGTGTTCTATAGCTTTGCAGATAA 57.440 30.769 0.00 0.00 0.00 1.75
709 766 7.226325 GTGGATCCAATGACAAAATTTGAACAA 59.774 33.333 18.20 0.00 0.00 2.83
947 1191 8.677148 AAGTAATCTTAGCTGTGAAGAAAACA 57.323 30.769 0.00 0.00 36.54 2.83
956 1200 4.418392 CTGTGAAGAAAACATGGCTATGC 58.582 43.478 10.37 0.00 37.85 3.14
990 1234 2.026822 ACAAAGGCTGGGATACACTCTG 60.027 50.000 0.00 0.00 39.74 3.35
991 1235 2.237143 CAAAGGCTGGGATACACTCTGA 59.763 50.000 0.00 0.00 39.74 3.27
992 1236 1.786937 AGGCTGGGATACACTCTGAG 58.213 55.000 2.45 2.45 39.74 3.35
993 1237 0.755686 GGCTGGGATACACTCTGAGG 59.244 60.000 9.85 0.76 39.74 3.86
994 1238 0.105778 GCTGGGATACACTCTGAGGC 59.894 60.000 9.85 0.00 39.74 4.70
995 1239 0.755686 CTGGGATACACTCTGAGGCC 59.244 60.000 9.85 0.00 39.74 5.19
996 1240 0.339859 TGGGATACACTCTGAGGCCT 59.660 55.000 3.86 3.86 39.74 5.19
997 1241 1.044611 GGGATACACTCTGAGGCCTC 58.955 60.000 26.78 26.78 39.74 4.70
998 1242 0.671251 GGATACACTCTGAGGCCTCG 59.329 60.000 27.43 21.01 0.00 4.63
999 1243 1.394618 GATACACTCTGAGGCCTCGT 58.605 55.000 27.43 20.01 0.00 4.18
1000 1244 1.751924 GATACACTCTGAGGCCTCGTT 59.248 52.381 27.43 8.78 0.00 3.85
1001 1245 2.502142 TACACTCTGAGGCCTCGTTA 57.498 50.000 27.43 14.13 0.00 3.18
1002 1246 1.629043 ACACTCTGAGGCCTCGTTAA 58.371 50.000 27.43 9.36 0.00 2.01
1018 1267 6.314400 GCCTCGTTAATAAATAGTCCACACAA 59.686 38.462 0.00 0.00 0.00 3.33
1020 1269 7.280730 TCGTTAATAAATAGTCCACACAACG 57.719 36.000 0.00 0.00 37.10 4.10
1033 1282 0.779408 CACAACGCACGTTCGTATCA 59.221 50.000 14.71 0.00 42.46 2.15
1038 1287 1.680105 CGCACGTTCGTATCACCCAC 61.680 60.000 0.00 0.00 0.00 4.61
1040 1289 1.346365 CACGTTCGTATCACCCACAG 58.654 55.000 0.00 0.00 0.00 3.66
1052 1302 1.380302 CCCACAGTTTGCCCTAGCT 59.620 57.895 0.00 0.00 40.80 3.32
1053 1303 0.251341 CCCACAGTTTGCCCTAGCTT 60.251 55.000 0.00 0.00 40.80 3.74
1054 1304 1.620822 CCACAGTTTGCCCTAGCTTT 58.379 50.000 0.00 0.00 40.80 3.51
1055 1305 1.963515 CCACAGTTTGCCCTAGCTTTT 59.036 47.619 0.00 0.00 40.80 2.27
1056 1306 2.029918 CCACAGTTTGCCCTAGCTTTTC 60.030 50.000 0.00 0.00 40.80 2.29
1058 1308 2.623416 ACAGTTTGCCCTAGCTTTTCAC 59.377 45.455 0.00 0.00 40.80 3.18
1059 1309 1.880027 AGTTTGCCCTAGCTTTTCACG 59.120 47.619 0.00 0.00 40.80 4.35
1061 1311 1.573829 TTGCCCTAGCTTTTCACGCG 61.574 55.000 3.53 3.53 40.80 6.01
1062 1312 2.750888 GCCCTAGCTTTTCACGCGG 61.751 63.158 12.47 0.00 35.50 6.46
1064 1314 2.395690 CTAGCTTTTCACGCGGCG 59.604 61.111 22.36 22.36 0.00 6.46
1065 1315 3.702334 CTAGCTTTTCACGCGGCGC 62.702 63.158 24.21 24.21 0.00 6.53
1082 1341 2.574018 GCCCACCCCAGCTTTTCAC 61.574 63.158 0.00 0.00 0.00 3.18
1376 1642 3.536917 CCTACCGATGGGCGCTCA 61.537 66.667 14.96 14.96 39.11 4.26
1378 1644 3.792053 CTACCGATGGGCGCTCACC 62.792 68.421 14.89 0.00 39.11 4.02
1435 1719 6.201234 GGCCTTGTCTTACTCGAAGATTATTC 59.799 42.308 0.00 0.00 45.96 1.75
1514 1798 2.549992 CCAGTCCATGTCGAAGTCCAAA 60.550 50.000 0.00 0.00 0.00 3.28
1516 1800 2.368875 AGTCCATGTCGAAGTCCAAAGT 59.631 45.455 0.00 0.00 0.00 2.66
1519 1803 2.738846 CCATGTCGAAGTCCAAAGTGAG 59.261 50.000 0.00 0.00 0.00 3.51
1637 2004 3.377172 CGAAGCCCGAAGATTTTGGTTAT 59.623 43.478 0.00 0.00 41.76 1.89
1638 2005 4.672409 GAAGCCCGAAGATTTTGGTTATG 58.328 43.478 0.00 0.00 31.82 1.90
1650 2017 9.710900 AAGATTTTGGTTATGACAAAAGGATTC 57.289 29.630 8.91 2.85 46.95 2.52
1791 2343 0.761187 AGGCACCATCGCTGATATGT 59.239 50.000 0.00 0.00 0.00 2.29
1895 2455 9.754382 GATTTCGTAATGAGGTACCTAATAACA 57.246 33.333 16.29 8.69 0.00 2.41
2015 2605 9.153721 TGATAAGTACCAAGTAATTAAACCACG 57.846 33.333 0.00 0.00 33.44 4.94
2276 2952 2.003658 GAGAGAGAGGAGCGCACTGG 62.004 65.000 11.47 0.00 0.00 4.00
2281 2957 2.925170 AGGAGCGCACTGGAGGTT 60.925 61.111 11.47 0.00 0.00 3.50
2282 2958 2.032681 GGAGCGCACTGGAGGTTT 59.967 61.111 11.47 0.00 0.00 3.27
2283 2959 1.600916 GGAGCGCACTGGAGGTTTT 60.601 57.895 11.47 0.00 0.00 2.43
2559 3235 3.201487 ACCTTGGCTACTTATACCCAACC 59.799 47.826 0.00 0.00 33.99 3.77
2563 3239 3.199071 TGGCTACTTATACCCAACCAGTG 59.801 47.826 0.00 0.00 0.00 3.66
2571 3247 4.722193 CCAACCAGTGGCGAATCT 57.278 55.556 9.78 0.00 41.72 2.40
2572 3248 3.853104 CCAACCAGTGGCGAATCTA 57.147 52.632 9.78 0.00 41.72 1.98
2573 3249 2.107950 CCAACCAGTGGCGAATCTAA 57.892 50.000 9.78 0.00 41.72 2.10
2574 3250 2.009774 CCAACCAGTGGCGAATCTAAG 58.990 52.381 9.78 0.00 41.72 2.18
2575 3251 2.009774 CAACCAGTGGCGAATCTAAGG 58.990 52.381 9.78 0.00 0.00 2.69
2576 3252 0.541863 ACCAGTGGCGAATCTAAGGG 59.458 55.000 9.78 0.00 0.00 3.95
2577 3253 0.815615 CCAGTGGCGAATCTAAGGGC 60.816 60.000 0.00 0.00 0.00 5.19
2578 3254 0.815615 CAGTGGCGAATCTAAGGGCC 60.816 60.000 0.00 0.00 45.76 5.80
2580 3256 4.464262 GGCGAATCTAAGGGCCAG 57.536 61.111 6.18 0.00 44.91 4.85
2581 3257 1.227973 GGCGAATCTAAGGGCCAGG 60.228 63.158 6.18 0.00 44.91 4.45
2582 3258 1.894282 GCGAATCTAAGGGCCAGGC 60.894 63.158 6.18 1.26 0.00 4.85
2583 3259 1.832912 CGAATCTAAGGGCCAGGCT 59.167 57.895 12.43 0.00 0.00 4.58
2584 3260 0.181350 CGAATCTAAGGGCCAGGCTT 59.819 55.000 12.43 0.54 0.00 4.35
2585 3261 1.811941 CGAATCTAAGGGCCAGGCTTC 60.812 57.143 12.43 4.28 0.00 3.86
2586 3262 0.181350 AATCTAAGGGCCAGGCTTCG 59.819 55.000 12.43 0.00 0.00 3.79
2587 3263 2.330924 ATCTAAGGGCCAGGCTTCGC 62.331 60.000 12.43 0.00 0.00 4.70
2588 3264 3.326578 TAAGGGCCAGGCTTCGCA 61.327 61.111 12.43 0.00 0.00 5.10
2589 3265 2.615227 CTAAGGGCCAGGCTTCGCAT 62.615 60.000 12.43 0.00 0.00 4.73
2590 3266 2.891941 TAAGGGCCAGGCTTCGCATG 62.892 60.000 12.43 0.00 40.20 4.06
2595 3271 2.488355 CAGGCTTCGCATGGCTTG 59.512 61.111 0.00 0.00 36.65 4.01
2596 3272 2.042259 CAGGCTTCGCATGGCTTGA 61.042 57.895 4.32 0.00 36.65 3.02
2597 3273 1.748122 AGGCTTCGCATGGCTTGAG 60.748 57.895 4.32 0.75 36.97 3.02
2598 3274 2.101770 GCTTCGCATGGCTTGAGC 59.898 61.111 4.32 0.87 41.14 4.26
2614 3290 2.985896 TGAGCCTACCCTCAAAAATCG 58.014 47.619 0.00 0.00 38.81 3.34
2615 3291 2.304761 TGAGCCTACCCTCAAAAATCGT 59.695 45.455 0.00 0.00 38.81 3.73
2616 3292 2.678336 GAGCCTACCCTCAAAAATCGTG 59.322 50.000 0.00 0.00 0.00 4.35
2617 3293 2.304761 AGCCTACCCTCAAAAATCGTGA 59.695 45.455 0.00 0.00 0.00 4.35
2618 3294 3.078837 GCCTACCCTCAAAAATCGTGAA 58.921 45.455 0.00 0.00 0.00 3.18
2619 3295 3.694566 GCCTACCCTCAAAAATCGTGAAT 59.305 43.478 0.00 0.00 0.00 2.57
2620 3296 4.157840 GCCTACCCTCAAAAATCGTGAATT 59.842 41.667 0.00 0.00 0.00 2.17
2621 3297 5.640732 CCTACCCTCAAAAATCGTGAATTG 58.359 41.667 0.00 0.00 0.00 2.32
2622 3298 5.414454 CCTACCCTCAAAAATCGTGAATTGA 59.586 40.000 0.00 0.00 0.00 2.57
2623 3299 5.982890 ACCCTCAAAAATCGTGAATTGAT 57.017 34.783 0.00 0.00 31.92 2.57
2624 3300 7.282224 CCTACCCTCAAAAATCGTGAATTGATA 59.718 37.037 0.00 0.00 31.92 2.15
2625 3301 7.645058 ACCCTCAAAAATCGTGAATTGATAT 57.355 32.000 0.00 0.00 31.92 1.63
2626 3302 8.066612 ACCCTCAAAAATCGTGAATTGATATT 57.933 30.769 0.00 0.00 31.92 1.28
2627 3303 8.531146 ACCCTCAAAAATCGTGAATTGATATTT 58.469 29.630 0.00 0.00 31.92 1.40
2628 3304 9.369904 CCCTCAAAAATCGTGAATTGATATTTT 57.630 29.630 0.00 0.00 31.92 1.82
2654 3330 4.664062 GCCTCAGGCTATTTGGCA 57.336 55.556 9.09 0.00 46.69 4.92
2655 3331 2.412605 GCCTCAGGCTATTTGGCAG 58.587 57.895 9.09 0.00 46.69 4.85
2656 3332 1.105759 GCCTCAGGCTATTTGGCAGG 61.106 60.000 9.09 0.00 46.69 4.85
2657 3333 1.105759 CCTCAGGCTATTTGGCAGGC 61.106 60.000 0.00 0.00 44.55 4.85
2658 3334 1.076777 TCAGGCTATTTGGCAGGCC 60.077 57.895 2.62 2.62 44.55 5.19
2659 3335 2.129785 CAGGCTATTTGGCAGGCCC 61.130 63.158 8.02 2.48 45.07 5.80
2660 3336 2.043046 GGCTATTTGGCAGGCCCA 60.043 61.111 8.02 0.00 43.51 5.36
2661 3337 2.129785 GGCTATTTGGCAGGCCCAG 61.130 63.158 8.02 0.00 46.39 4.45
2662 3338 1.380380 GCTATTTGGCAGGCCCAGT 60.380 57.895 8.02 0.00 46.39 4.00
2663 3339 1.387295 GCTATTTGGCAGGCCCAGTC 61.387 60.000 8.02 0.00 46.39 3.51
2664 3340 0.753111 CTATTTGGCAGGCCCAGTCC 60.753 60.000 8.02 0.00 46.39 3.85
2665 3341 1.505151 TATTTGGCAGGCCCAGTCCA 61.505 55.000 8.02 1.85 46.39 4.02
2666 3342 2.384933 ATTTGGCAGGCCCAGTCCAA 62.385 55.000 8.02 8.25 46.39 3.53
2667 3343 3.512154 TTGGCAGGCCCAGTCCAAG 62.512 63.158 8.02 0.00 46.39 3.61
2668 3344 3.971702 GGCAGGCCCAGTCCAAGT 61.972 66.667 0.00 0.00 0.00 3.16
2669 3345 2.602676 GGCAGGCCCAGTCCAAGTA 61.603 63.158 0.00 0.00 0.00 2.24
2670 3346 1.378762 GCAGGCCCAGTCCAAGTAA 59.621 57.895 0.00 0.00 0.00 2.24
2671 3347 0.251165 GCAGGCCCAGTCCAAGTAAA 60.251 55.000 0.00 0.00 0.00 2.01
2672 3348 1.821666 GCAGGCCCAGTCCAAGTAAAA 60.822 52.381 0.00 0.00 0.00 1.52
2673 3349 1.886542 CAGGCCCAGTCCAAGTAAAAC 59.113 52.381 0.00 0.00 0.00 2.43
2674 3350 1.497286 AGGCCCAGTCCAAGTAAAACA 59.503 47.619 0.00 0.00 0.00 2.83
2675 3351 1.886542 GGCCCAGTCCAAGTAAAACAG 59.113 52.381 0.00 0.00 0.00 3.16
2676 3352 2.488347 GGCCCAGTCCAAGTAAAACAGA 60.488 50.000 0.00 0.00 0.00 3.41
2677 3353 3.421844 GCCCAGTCCAAGTAAAACAGAT 58.578 45.455 0.00 0.00 0.00 2.90
2678 3354 3.191371 GCCCAGTCCAAGTAAAACAGATG 59.809 47.826 0.00 0.00 0.00 2.90
2679 3355 3.191371 CCCAGTCCAAGTAAAACAGATGC 59.809 47.826 0.00 0.00 0.00 3.91
2680 3356 3.820467 CCAGTCCAAGTAAAACAGATGCA 59.180 43.478 0.00 0.00 0.00 3.96
2681 3357 4.083110 CCAGTCCAAGTAAAACAGATGCAG 60.083 45.833 0.00 0.00 0.00 4.41
2682 3358 3.503748 AGTCCAAGTAAAACAGATGCAGC 59.496 43.478 0.00 0.00 0.00 5.25
2683 3359 2.819608 TCCAAGTAAAACAGATGCAGCC 59.180 45.455 0.00 0.00 0.00 4.85
2684 3360 2.414559 CCAAGTAAAACAGATGCAGCCG 60.415 50.000 0.00 0.00 0.00 5.52
2685 3361 1.453155 AGTAAAACAGATGCAGCCGG 58.547 50.000 0.00 0.00 0.00 6.13
2686 3362 0.179163 GTAAAACAGATGCAGCCGGC 60.179 55.000 21.89 21.89 45.13 6.13
2687 3363 0.322456 TAAAACAGATGCAGCCGGCT 60.322 50.000 27.08 27.08 45.15 5.52
2688 3364 1.589716 AAAACAGATGCAGCCGGCTC 61.590 55.000 30.29 21.68 45.15 4.70
2689 3365 2.753009 AAACAGATGCAGCCGGCTCA 62.753 55.000 30.29 26.61 45.15 4.26
2690 3366 2.203167 CAGATGCAGCCGGCTCAT 60.203 61.111 30.29 29.84 45.15 2.90
2691 3367 2.110627 AGATGCAGCCGGCTCATC 59.889 61.111 36.31 36.31 45.15 2.92
2692 3368 2.110627 GATGCAGCCGGCTCATCT 59.889 61.111 36.10 22.49 45.15 2.90
2693 3369 1.117749 AGATGCAGCCGGCTCATCTA 61.118 55.000 40.29 24.44 43.46 1.98
2694 3370 0.250038 GATGCAGCCGGCTCATCTAA 60.250 55.000 36.10 20.13 45.15 2.10
2695 3371 0.250209 ATGCAGCCGGCTCATCTAAG 60.250 55.000 30.29 15.30 45.15 2.18
2696 3372 2.250237 GCAGCCGGCTCATCTAAGC 61.250 63.158 30.29 21.87 41.73 3.09
2713 3389 2.662596 CCAACTAGGCCACGCAGA 59.337 61.111 5.01 0.00 0.00 4.26
2714 3390 1.448540 CCAACTAGGCCACGCAGAG 60.449 63.158 5.01 0.00 0.00 3.35
2715 3391 2.103042 CAACTAGGCCACGCAGAGC 61.103 63.158 5.01 0.00 0.00 4.09
2720 3396 4.840005 GGCCACGCAGAGCCTACC 62.840 72.222 0.00 0.00 44.59 3.18
2721 3397 4.840005 GCCACGCAGAGCCTACCC 62.840 72.222 0.00 0.00 0.00 3.69
2722 3398 3.077556 CCACGCAGAGCCTACCCT 61.078 66.667 0.00 0.00 0.00 4.34
2723 3399 2.185350 CACGCAGAGCCTACCCTG 59.815 66.667 0.00 0.00 0.00 4.45
2728 3404 3.890527 CAGAGCCTACCCTGCATTT 57.109 52.632 0.00 0.00 0.00 2.32
2729 3405 1.673168 CAGAGCCTACCCTGCATTTC 58.327 55.000 0.00 0.00 0.00 2.17
2730 3406 0.548510 AGAGCCTACCCTGCATTTCC 59.451 55.000 0.00 0.00 0.00 3.13
2731 3407 0.255890 GAGCCTACCCTGCATTTCCA 59.744 55.000 0.00 0.00 0.00 3.53
2732 3408 0.929244 AGCCTACCCTGCATTTCCAT 59.071 50.000 0.00 0.00 0.00 3.41
2733 3409 1.133668 AGCCTACCCTGCATTTCCATC 60.134 52.381 0.00 0.00 0.00 3.51
2734 3410 1.986882 CCTACCCTGCATTTCCATCC 58.013 55.000 0.00 0.00 0.00 3.51
2735 3411 1.496429 CCTACCCTGCATTTCCATCCT 59.504 52.381 0.00 0.00 0.00 3.24
2736 3412 2.711009 CCTACCCTGCATTTCCATCCTA 59.289 50.000 0.00 0.00 0.00 2.94
2737 3413 3.244700 CCTACCCTGCATTTCCATCCTAG 60.245 52.174 0.00 0.00 0.00 3.02
2738 3414 2.492025 ACCCTGCATTTCCATCCTAGA 58.508 47.619 0.00 0.00 0.00 2.43
2739 3415 3.059097 ACCCTGCATTTCCATCCTAGAT 58.941 45.455 0.00 0.00 0.00 1.98
2740 3416 3.464833 ACCCTGCATTTCCATCCTAGATT 59.535 43.478 0.00 0.00 0.00 2.40
2741 3417 4.077822 CCCTGCATTTCCATCCTAGATTC 58.922 47.826 0.00 0.00 0.00 2.52
2742 3418 3.750130 CCTGCATTTCCATCCTAGATTCG 59.250 47.826 0.00 0.00 0.00 3.34
2743 3419 3.141398 TGCATTTCCATCCTAGATTCGC 58.859 45.455 0.00 0.00 0.00 4.70
2744 3420 3.181451 TGCATTTCCATCCTAGATTCGCT 60.181 43.478 0.00 0.00 0.00 4.93
2745 3421 3.188048 GCATTTCCATCCTAGATTCGCTG 59.812 47.826 0.00 0.00 0.00 5.18
2746 3422 2.533266 TTCCATCCTAGATTCGCTGC 57.467 50.000 0.00 0.00 0.00 5.25
2747 3423 1.709578 TCCATCCTAGATTCGCTGCT 58.290 50.000 0.00 0.00 0.00 4.24
2748 3424 1.342496 TCCATCCTAGATTCGCTGCTG 59.658 52.381 0.00 0.00 0.00 4.41
2749 3425 1.069823 CCATCCTAGATTCGCTGCTGT 59.930 52.381 0.00 0.00 0.00 4.40
2750 3426 2.297315 CCATCCTAGATTCGCTGCTGTA 59.703 50.000 0.00 0.00 0.00 2.74
2751 3427 3.312828 CATCCTAGATTCGCTGCTGTAC 58.687 50.000 0.00 0.00 0.00 2.90
2752 3428 1.681793 TCCTAGATTCGCTGCTGTACC 59.318 52.381 0.00 0.00 0.00 3.34
2753 3429 1.269831 CCTAGATTCGCTGCTGTACCC 60.270 57.143 0.00 0.00 0.00 3.69
2754 3430 1.409064 CTAGATTCGCTGCTGTACCCA 59.591 52.381 0.00 0.00 0.00 4.51
2755 3431 0.613260 AGATTCGCTGCTGTACCCAA 59.387 50.000 0.00 0.00 0.00 4.12
2756 3432 0.727398 GATTCGCTGCTGTACCCAAC 59.273 55.000 0.00 0.00 0.00 3.77
2757 3433 0.036164 ATTCGCTGCTGTACCCAACA 59.964 50.000 0.00 0.00 36.42 3.33
2758 3434 0.179043 TTCGCTGCTGTACCCAACAA 60.179 50.000 0.00 0.00 37.74 2.83
2823 3499 0.695924 TCCCATACACACCCTGTTGG 59.304 55.000 0.00 0.00 41.37 3.77
2824 3500 0.695924 CCCATACACACCCTGTTGGA 59.304 55.000 0.00 0.00 35.01 3.53
2825 3501 1.613255 CCCATACACACCCTGTTGGAC 60.613 57.143 0.00 0.00 35.01 4.02
2826 3502 1.073125 CCATACACACCCTGTTGGACA 59.927 52.381 0.00 0.00 35.01 4.02
2827 3503 2.426522 CATACACACCCTGTTGGACAG 58.573 52.381 1.14 1.14 45.53 3.51
2834 3510 4.386413 CTGTTGGACAGGAGCACC 57.614 61.111 0.00 0.00 42.35 5.01
2835 3511 1.451504 CTGTTGGACAGGAGCACCA 59.548 57.895 2.07 0.00 42.35 4.17
2836 3512 0.604780 CTGTTGGACAGGAGCACCAG 60.605 60.000 2.07 0.00 42.35 4.00
2837 3513 1.344953 TGTTGGACAGGAGCACCAGT 61.345 55.000 2.07 0.00 38.61 4.00
2838 3514 0.685097 GTTGGACAGGAGCACCAGTA 59.315 55.000 2.07 0.00 36.05 2.74
2839 3515 1.071699 GTTGGACAGGAGCACCAGTAA 59.928 52.381 2.07 0.00 36.05 2.24
2840 3516 0.976641 TGGACAGGAGCACCAGTAAG 59.023 55.000 2.07 0.00 36.05 2.34
2841 3517 0.391793 GGACAGGAGCACCAGTAAGC 60.392 60.000 2.07 0.00 36.05 3.09
2842 3518 0.321671 GACAGGAGCACCAGTAAGCA 59.678 55.000 2.07 0.00 36.05 3.91
2843 3519 0.764890 ACAGGAGCACCAGTAAGCAA 59.235 50.000 2.07 0.00 38.94 3.91
2844 3520 1.352352 ACAGGAGCACCAGTAAGCAAT 59.648 47.619 2.07 0.00 38.94 3.56
2845 3521 2.224867 ACAGGAGCACCAGTAAGCAATT 60.225 45.455 2.07 0.00 38.94 2.32
2846 3522 3.009033 ACAGGAGCACCAGTAAGCAATTA 59.991 43.478 2.07 0.00 38.94 1.40
2847 3523 4.009675 CAGGAGCACCAGTAAGCAATTAA 58.990 43.478 2.07 0.00 38.94 1.40
2848 3524 4.010349 AGGAGCACCAGTAAGCAATTAAC 58.990 43.478 2.07 0.00 38.94 2.01
2849 3525 3.756434 GGAGCACCAGTAAGCAATTAACA 59.244 43.478 0.00 0.00 35.97 2.41
2850 3526 4.217550 GGAGCACCAGTAAGCAATTAACAA 59.782 41.667 0.00 0.00 35.97 2.83
2851 3527 5.376854 AGCACCAGTAAGCAATTAACAAG 57.623 39.130 0.00 0.00 0.00 3.16
2852 3528 5.070001 AGCACCAGTAAGCAATTAACAAGA 58.930 37.500 0.00 0.00 0.00 3.02
2853 3529 5.534654 AGCACCAGTAAGCAATTAACAAGAA 59.465 36.000 0.00 0.00 0.00 2.52
2854 3530 6.209391 AGCACCAGTAAGCAATTAACAAGAAT 59.791 34.615 0.00 0.00 0.00 2.40
2855 3531 6.308766 GCACCAGTAAGCAATTAACAAGAATG 59.691 38.462 0.00 0.00 0.00 2.67
2856 3532 7.370383 CACCAGTAAGCAATTAACAAGAATGT 58.630 34.615 0.00 0.00 43.14 2.71
2857 3533 8.511321 CACCAGTAAGCAATTAACAAGAATGTA 58.489 33.333 0.00 0.00 39.40 2.29
2858 3534 8.730680 ACCAGTAAGCAATTAACAAGAATGTAG 58.269 33.333 0.00 0.00 39.40 2.74
2859 3535 8.946085 CCAGTAAGCAATTAACAAGAATGTAGA 58.054 33.333 0.00 0.00 39.40 2.59
2903 3579 6.909550 ATTAACAAGAATGTACAAGGGCAA 57.090 33.333 0.00 0.00 39.40 4.52
3039 3716 7.505258 TCAAGTGTCCATATTTTCCATATCGA 58.495 34.615 0.00 0.00 0.00 3.59
3057 3734 8.611757 CCATATCGATTCTAAAAACATGTGACA 58.388 33.333 1.71 0.00 0.00 3.58
3072 3749 9.665719 AAACATGTGACATAACAGTGTATCATA 57.334 29.630 0.00 0.00 32.52 2.15
3075 3752 8.768019 CATGTGACATAACAGTGTATCATAAGG 58.232 37.037 0.00 0.00 32.52 2.69
3076 3753 6.761242 TGTGACATAACAGTGTATCATAAGGC 59.239 38.462 0.00 0.00 31.16 4.35
3127 3805 2.064573 GCTTTGTACAAAAGCGCCAT 57.935 45.000 20.89 0.00 42.46 4.40
3430 5505 5.429681 TCCAAATTTCCCACGAGATAAGA 57.570 39.130 0.00 0.00 0.00 2.10
3455 5530 2.588877 GGGACATCATCGGCCGTG 60.589 66.667 27.15 21.80 0.00 4.94
3507 5582 2.572556 TCCAACAGGCCTTTACCGAATA 59.427 45.455 0.00 0.00 33.69 1.75
3836 6595 4.257731 TGCAGAGTAAATGCCATCGTTAA 58.742 39.130 0.00 0.00 43.18 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 5.282055 TCACATGTTGCAAAAATGGGTAA 57.718 34.783 19.73 4.80 43.89 2.85
141 143 7.939784 ATCACTTAGGTCCTAAAATGGAAAC 57.060 36.000 12.50 0.00 37.93 2.78
188 190 7.981517 AGGAACTAACACTCACAGGGAGATTC 61.982 46.154 6.71 0.56 41.88 2.52
222 224 9.420118 ACATGGCCTATGAAGAATGTTATTTAA 57.580 29.630 18.41 0.00 39.21 1.52
224 226 7.560991 TGACATGGCCTATGAAGAATGTTATTT 59.439 33.333 18.41 0.00 39.21 1.40
225 227 7.062322 TGACATGGCCTATGAAGAATGTTATT 58.938 34.615 18.41 0.00 39.21 1.40
226 228 6.604171 TGACATGGCCTATGAAGAATGTTAT 58.396 36.000 18.41 0.00 39.21 1.89
227 229 6.000246 TGACATGGCCTATGAAGAATGTTA 58.000 37.500 18.41 5.74 39.21 2.41
270 306 6.151691 CCCATCAAGGCATTAATAAATCACG 58.848 40.000 0.00 0.00 35.39 4.35
271 307 7.054491 ACCCATCAAGGCATTAATAAATCAC 57.946 36.000 0.00 0.00 35.39 3.06
272 308 7.673641 AACCCATCAAGGCATTAATAAATCA 57.326 32.000 0.00 0.00 35.39 2.57
273 309 9.643693 CATAACCCATCAAGGCATTAATAAATC 57.356 33.333 0.00 0.00 35.39 2.17
297 333 4.378770 CGTGCAACTTTAGTGCAGAATCAT 60.379 41.667 0.00 0.00 39.39 2.45
300 336 2.226437 CCGTGCAACTTTAGTGCAGAAT 59.774 45.455 0.00 0.00 39.39 2.40
320 356 1.512926 AGACAACATTGACTGACGCC 58.487 50.000 0.00 0.00 32.23 5.68
327 363 7.011389 TGGATATCATTCGAAGACAACATTGAC 59.989 37.037 3.35 0.00 34.32 3.18
520 573 2.828877 AGTAAGCTTGTACGTGCAACA 58.171 42.857 15.43 0.00 35.74 3.33
521 574 3.985925 ACTAGTAAGCTTGTACGTGCAAC 59.014 43.478 15.43 11.99 0.00 4.17
522 575 4.022589 AGACTAGTAAGCTTGTACGTGCAA 60.023 41.667 18.22 18.22 31.18 4.08
523 576 3.504906 AGACTAGTAAGCTTGTACGTGCA 59.495 43.478 9.86 0.82 31.18 4.57
524 577 4.094090 AGACTAGTAAGCTTGTACGTGC 57.906 45.455 9.86 0.00 31.18 5.34
525 578 5.292671 TGAGACTAGTAAGCTTGTACGTG 57.707 43.478 9.86 1.54 31.18 4.49
526 579 5.954296 TTGAGACTAGTAAGCTTGTACGT 57.046 39.130 9.86 0.90 31.18 3.57
527 580 6.147581 TGTTTGAGACTAGTAAGCTTGTACG 58.852 40.000 9.86 0.00 31.18 3.67
528 581 7.437267 TGTTGTTTGAGACTAGTAAGCTTGTAC 59.563 37.037 9.86 0.00 31.18 2.90
529 582 7.494211 TGTTGTTTGAGACTAGTAAGCTTGTA 58.506 34.615 9.86 0.00 31.18 2.41
530 583 6.346096 TGTTGTTTGAGACTAGTAAGCTTGT 58.654 36.000 9.86 0.00 33.59 3.16
531 584 6.844696 TGTTGTTTGAGACTAGTAAGCTTG 57.155 37.500 9.86 0.00 0.00 4.01
532 585 7.095607 CGATTGTTGTTTGAGACTAGTAAGCTT 60.096 37.037 3.48 3.48 0.00 3.74
533 586 6.366332 CGATTGTTGTTTGAGACTAGTAAGCT 59.634 38.462 0.00 0.00 0.00 3.74
534 587 6.526222 CGATTGTTGTTTGAGACTAGTAAGC 58.474 40.000 0.00 0.00 0.00 3.09
535 588 6.401153 GGCGATTGTTGTTTGAGACTAGTAAG 60.401 42.308 0.00 0.00 0.00 2.34
536 589 5.407387 GGCGATTGTTGTTTGAGACTAGTAA 59.593 40.000 0.00 0.00 0.00 2.24
537 590 4.927425 GGCGATTGTTGTTTGAGACTAGTA 59.073 41.667 0.00 0.00 0.00 1.82
538 591 3.746492 GGCGATTGTTGTTTGAGACTAGT 59.254 43.478 0.00 0.00 0.00 2.57
539 592 3.181530 CGGCGATTGTTGTTTGAGACTAG 60.182 47.826 0.00 0.00 0.00 2.57
540 593 2.734606 CGGCGATTGTTGTTTGAGACTA 59.265 45.455 0.00 0.00 0.00 2.59
541 594 1.531149 CGGCGATTGTTGTTTGAGACT 59.469 47.619 0.00 0.00 0.00 3.24
542 595 1.399727 CCGGCGATTGTTGTTTGAGAC 60.400 52.381 9.30 0.00 0.00 3.36
543 596 0.871722 CCGGCGATTGTTGTTTGAGA 59.128 50.000 9.30 0.00 0.00 3.27
544 597 0.109781 CCCGGCGATTGTTGTTTGAG 60.110 55.000 9.30 0.00 0.00 3.02
591 644 7.701078 CAGATGTTAATTTCCAGATTGAAGCTG 59.299 37.037 2.98 2.98 0.00 4.24
623 676 6.183360 ACAAAACAGGAGTAGACAAAGCTAGA 60.183 38.462 0.00 0.00 0.00 2.43
626 679 4.576463 CACAAAACAGGAGTAGACAAAGCT 59.424 41.667 0.00 0.00 0.00 3.74
633 686 7.178628 AGCTATAGAACACAAAACAGGAGTAGA 59.821 37.037 3.21 0.00 0.00 2.59
641 694 6.262049 TCTGCAAAGCTATAGAACACAAAACA 59.738 34.615 3.21 0.00 0.00 2.83
669 724 9.645128 TCATTGGATCCACTATGAAATTTATGT 57.355 29.630 21.77 0.00 0.00 2.29
693 748 9.650539 TCTCTGAAAATTGTTCAAATTTTGTCA 57.349 25.926 12.20 7.20 39.23 3.58
709 766 7.777440 AGACTTCTCCACTTTTTCTCTGAAAAT 59.223 33.333 6.35 0.00 0.00 1.82
831 889 9.930693 ATAAAGTTATTTATTGACCCGCAAAAA 57.069 25.926 0.00 0.00 38.21 1.94
832 890 9.930693 AATAAAGTTATTTATTGACCCGCAAAA 57.069 25.926 5.43 0.00 45.55 2.44
833 891 9.575783 GAATAAAGTTATTTATTGACCCGCAAA 57.424 29.630 9.95 0.00 46.67 3.68
834 892 8.192110 GGAATAAAGTTATTTATTGACCCGCAA 58.808 33.333 9.95 0.00 46.67 4.85
835 893 7.558444 AGGAATAAAGTTATTTATTGACCCGCA 59.442 33.333 9.95 0.00 46.67 5.69
836 894 7.937649 AGGAATAAAGTTATTTATTGACCCGC 58.062 34.615 9.95 0.00 46.67 6.13
837 895 9.116067 TGAGGAATAAAGTTATTTATTGACCCG 57.884 33.333 9.95 0.00 46.67 5.28
920 978 7.582435 TTTCTTCACAGCTAAGATTACTTCG 57.418 36.000 0.00 0.00 37.53 3.79
956 1200 2.094762 CCTTTGTGAGGTCGGTAAGG 57.905 55.000 0.00 0.00 40.95 2.69
983 1227 1.629043 TTAACGAGGCCTCAGAGTGT 58.371 50.000 31.67 18.16 0.00 3.55
990 1234 5.695363 GTGGACTATTTATTAACGAGGCCTC 59.305 44.000 23.79 23.79 36.18 4.70
991 1235 5.129815 TGTGGACTATTTATTAACGAGGCCT 59.870 40.000 3.86 3.86 36.18 5.19
992 1236 5.235831 GTGTGGACTATTTATTAACGAGGCC 59.764 44.000 0.00 0.00 35.70 5.19
993 1237 5.813672 TGTGTGGACTATTTATTAACGAGGC 59.186 40.000 0.00 0.00 0.00 4.70
994 1238 7.463648 CGTTGTGTGGACTATTTATTAACGAGG 60.464 40.741 0.00 0.00 39.36 4.63
995 1239 7.388712 CGTTGTGTGGACTATTTATTAACGAG 58.611 38.462 0.00 0.00 39.36 4.18
996 1240 6.183360 GCGTTGTGTGGACTATTTATTAACGA 60.183 38.462 0.00 0.00 39.36 3.85
997 1241 5.955496 GCGTTGTGTGGACTATTTATTAACG 59.045 40.000 0.00 0.00 39.81 3.18
998 1242 6.739550 GTGCGTTGTGTGGACTATTTATTAAC 59.260 38.462 0.00 0.00 0.00 2.01
999 1243 6.401260 CGTGCGTTGTGTGGACTATTTATTAA 60.401 38.462 0.00 0.00 0.00 1.40
1000 1244 5.062433 CGTGCGTTGTGTGGACTATTTATTA 59.938 40.000 0.00 0.00 0.00 0.98
1001 1245 4.142988 CGTGCGTTGTGTGGACTATTTATT 60.143 41.667 0.00 0.00 0.00 1.40
1002 1246 3.369756 CGTGCGTTGTGTGGACTATTTAT 59.630 43.478 0.00 0.00 0.00 1.40
1020 1269 0.668096 TGTGGGTGATACGAACGTGC 60.668 55.000 10.14 0.00 0.00 5.34
1033 1282 1.074951 GCTAGGGCAAACTGTGGGT 59.925 57.895 0.00 0.00 38.54 4.51
1038 1287 2.350772 CGTGAAAAGCTAGGGCAAACTG 60.351 50.000 0.00 0.00 41.70 3.16
1040 1289 1.666023 GCGTGAAAAGCTAGGGCAAAC 60.666 52.381 0.00 0.00 38.67 2.93
1064 1314 2.203625 TGAAAAGCTGGGGTGGGC 60.204 61.111 0.00 0.00 0.00 5.36
1065 1315 2.268076 CGTGAAAAGCTGGGGTGGG 61.268 63.158 0.00 0.00 0.00 4.61
1066 1316 2.919494 GCGTGAAAAGCTGGGGTGG 61.919 63.158 0.00 0.00 38.67 4.61
1068 1318 2.978010 CGCGTGAAAAGCTGGGGT 60.978 61.111 0.00 0.00 39.95 4.95
1071 1321 4.741781 CGCCGCGTGAAAAGCTGG 62.742 66.667 4.92 0.00 39.95 4.85
1075 1325 3.928618 GAAGGCGCCGCGTGAAAAG 62.929 63.158 23.20 0.00 0.00 2.27
1076 1326 4.020378 GAAGGCGCCGCGTGAAAA 62.020 61.111 23.20 0.00 0.00 2.29
1378 1644 4.604843 TCCTGTATTATACCGCGATACG 57.395 45.455 8.23 4.02 43.15 3.06
1390 1656 4.136796 GCCATTGCAGTGATCCTGTATTA 58.863 43.478 11.31 0.00 43.55 0.98
1395 1667 0.395311 AGGCCATTGCAGTGATCCTG 60.395 55.000 17.65 6.79 44.53 3.86
1435 1719 6.073440 CGGGTTAACCACATAATAATTCTCGG 60.073 42.308 25.71 0.00 40.22 4.63
1495 1779 2.368875 ACTTTGGACTTCGACATGGACT 59.631 45.455 0.00 0.00 0.00 3.85
1514 1798 1.554160 CTGAAGTCTGCATCCCTCACT 59.446 52.381 0.00 0.00 0.00 3.41
1516 1800 1.942776 TCTGAAGTCTGCATCCCTCA 58.057 50.000 0.00 0.00 0.00 3.86
1519 1803 2.435805 TGGTATCTGAAGTCTGCATCCC 59.564 50.000 0.00 0.00 0.00 3.85
1637 2004 7.122650 GGGTCTAATTCATGAATCCTTTTGTCA 59.877 37.037 20.95 0.00 0.00 3.58
1638 2005 7.416777 GGGGTCTAATTCATGAATCCTTTTGTC 60.417 40.741 20.95 5.72 0.00 3.18
1650 2017 6.782986 TCTCCATAATGGGGTCTAATTCATG 58.217 40.000 0.00 0.00 39.64 3.07
2015 2605 2.167693 TCACCGAGTTCACCATGTATCC 59.832 50.000 0.00 0.00 0.00 2.59
2263 2927 2.456287 AAACCTCCAGTGCGCTCCTC 62.456 60.000 9.73 0.00 0.00 3.71
2276 2952 7.254795 CCATGTATTCCGTATCTTCAAAACCTC 60.255 40.741 0.00 0.00 0.00 3.85
2281 2957 9.268268 GTATTCCATGTATTCCGTATCTTCAAA 57.732 33.333 0.00 0.00 0.00 2.69
2282 2958 7.876068 GGTATTCCATGTATTCCGTATCTTCAA 59.124 37.037 0.00 0.00 0.00 2.69
2283 2959 7.234782 AGGTATTCCATGTATTCCGTATCTTCA 59.765 37.037 0.00 0.00 35.89 3.02
2347 3023 7.428826 CATTCAAACTTTTCTTCCACTAGCTT 58.571 34.615 0.00 0.00 0.00 3.74
2559 3235 0.815615 GGCCCTTAGATTCGCCACTG 60.816 60.000 0.00 0.00 41.25 3.66
2563 3239 1.227973 CCTGGCCCTTAGATTCGCC 60.228 63.158 0.00 0.00 41.99 5.54
2564 3240 1.894282 GCCTGGCCCTTAGATTCGC 60.894 63.158 7.66 0.00 0.00 4.70
2565 3241 0.181350 AAGCCTGGCCCTTAGATTCG 59.819 55.000 16.57 0.00 0.00 3.34
2566 3242 1.811941 CGAAGCCTGGCCCTTAGATTC 60.812 57.143 16.57 9.65 0.00 2.52
2567 3243 0.181350 CGAAGCCTGGCCCTTAGATT 59.819 55.000 16.57 0.10 0.00 2.40
2568 3244 1.832912 CGAAGCCTGGCCCTTAGAT 59.167 57.895 16.57 0.00 0.00 1.98
2569 3245 3.309582 CGAAGCCTGGCCCTTAGA 58.690 61.111 16.57 0.00 0.00 2.10
2580 3256 3.407046 GCTCAAGCCATGCGAAGCC 62.407 63.158 0.00 0.00 45.38 4.35
2581 3257 2.101770 GCTCAAGCCATGCGAAGC 59.898 61.111 0.00 0.00 45.97 3.86
2591 3267 2.200373 TTTTGAGGGTAGGCTCAAGC 57.800 50.000 0.00 0.00 40.16 4.01
2592 3268 3.375299 CGATTTTTGAGGGTAGGCTCAAG 59.625 47.826 0.00 0.00 40.16 3.02
2593 3269 3.244770 ACGATTTTTGAGGGTAGGCTCAA 60.245 43.478 0.00 0.00 37.75 3.02
2594 3270 2.304761 ACGATTTTTGAGGGTAGGCTCA 59.695 45.455 0.00 0.00 0.00 4.26
2595 3271 2.678336 CACGATTTTTGAGGGTAGGCTC 59.322 50.000 0.00 0.00 0.00 4.70
2596 3272 2.304761 TCACGATTTTTGAGGGTAGGCT 59.695 45.455 0.00 0.00 0.00 4.58
2597 3273 2.706890 TCACGATTTTTGAGGGTAGGC 58.293 47.619 0.00 0.00 0.00 3.93
2598 3274 5.414454 TCAATTCACGATTTTTGAGGGTAGG 59.586 40.000 0.00 0.00 0.00 3.18
2599 3275 6.494893 TCAATTCACGATTTTTGAGGGTAG 57.505 37.500 0.00 0.00 0.00 3.18
2600 3276 8.746052 ATATCAATTCACGATTTTTGAGGGTA 57.254 30.769 0.00 0.00 32.13 3.69
2601 3277 5.982890 ATCAATTCACGATTTTTGAGGGT 57.017 34.783 0.00 0.00 32.13 4.34
2602 3278 8.931385 AAATATCAATTCACGATTTTTGAGGG 57.069 30.769 0.00 0.00 32.13 4.30
2619 3295 7.931948 GCCTGAGGCTTAGTAGTAAAATATCAA 59.068 37.037 17.96 0.00 46.69 2.57
2620 3296 7.442656 GCCTGAGGCTTAGTAGTAAAATATCA 58.557 38.462 17.96 0.00 46.69 2.15
2621 3297 7.892778 GCCTGAGGCTTAGTAGTAAAATATC 57.107 40.000 17.96 0.00 46.69 1.63
2638 3314 1.105759 GCCTGCCAAATAGCCTGAGG 61.106 60.000 0.00 0.00 0.00 3.86
2639 3315 1.105759 GGCCTGCCAAATAGCCTGAG 61.106 60.000 2.58 0.00 42.34 3.35
2640 3316 1.076777 GGCCTGCCAAATAGCCTGA 60.077 57.895 2.58 0.00 42.34 3.86
2641 3317 2.129785 GGGCCTGCCAAATAGCCTG 61.130 63.158 10.86 0.00 45.07 4.85
2642 3318 2.280079 GGGCCTGCCAAATAGCCT 59.720 61.111 10.86 0.00 45.07 4.58
2643 3319 2.043046 TGGGCCTGCCAAATAGCC 60.043 61.111 10.86 0.00 44.99 3.93
2644 3320 1.380380 ACTGGGCCTGCCAAATAGC 60.380 57.895 10.71 0.00 37.98 2.97
2645 3321 0.753111 GGACTGGGCCTGCCAAATAG 60.753 60.000 10.71 5.14 37.98 1.73
2646 3322 1.306296 GGACTGGGCCTGCCAAATA 59.694 57.895 10.71 0.00 37.98 1.40
2647 3323 2.037847 GGACTGGGCCTGCCAAAT 59.962 61.111 10.71 0.00 37.98 2.32
2648 3324 3.080158 TTGGACTGGGCCTGCCAAA 62.080 57.895 25.50 9.16 37.46 3.28
2649 3325 3.506743 TTGGACTGGGCCTGCCAA 61.507 61.111 24.59 24.59 38.02 4.52
2650 3326 3.970410 CTTGGACTGGGCCTGCCA 61.970 66.667 17.97 17.97 37.98 4.92
2651 3327 2.137177 TTACTTGGACTGGGCCTGCC 62.137 60.000 10.71 12.76 0.00 4.85
2652 3328 0.251165 TTTACTTGGACTGGGCCTGC 60.251 55.000 10.71 3.45 0.00 4.85
2653 3329 1.886542 GTTTTACTTGGACTGGGCCTG 59.113 52.381 9.11 9.11 0.00 4.85
2654 3330 1.497286 TGTTTTACTTGGACTGGGCCT 59.503 47.619 4.53 0.00 0.00 5.19
2655 3331 1.886542 CTGTTTTACTTGGACTGGGCC 59.113 52.381 0.00 0.00 0.00 5.80
2656 3332 2.858745 TCTGTTTTACTTGGACTGGGC 58.141 47.619 0.00 0.00 0.00 5.36
2657 3333 3.191371 GCATCTGTTTTACTTGGACTGGG 59.809 47.826 0.00 0.00 0.00 4.45
2658 3334 3.820467 TGCATCTGTTTTACTTGGACTGG 59.180 43.478 0.00 0.00 0.00 4.00
2659 3335 4.614535 GCTGCATCTGTTTTACTTGGACTG 60.615 45.833 0.00 0.00 0.00 3.51
2660 3336 3.503748 GCTGCATCTGTTTTACTTGGACT 59.496 43.478 0.00 0.00 0.00 3.85
2661 3337 3.366374 GGCTGCATCTGTTTTACTTGGAC 60.366 47.826 0.50 0.00 0.00 4.02
2662 3338 2.819608 GGCTGCATCTGTTTTACTTGGA 59.180 45.455 0.50 0.00 0.00 3.53
2663 3339 2.414559 CGGCTGCATCTGTTTTACTTGG 60.415 50.000 0.50 0.00 0.00 3.61
2664 3340 2.414559 CCGGCTGCATCTGTTTTACTTG 60.415 50.000 0.50 0.00 0.00 3.16
2665 3341 1.812571 CCGGCTGCATCTGTTTTACTT 59.187 47.619 0.50 0.00 0.00 2.24
2666 3342 1.453155 CCGGCTGCATCTGTTTTACT 58.547 50.000 0.50 0.00 0.00 2.24
2667 3343 0.179163 GCCGGCTGCATCTGTTTTAC 60.179 55.000 22.15 0.00 40.77 2.01
2668 3344 0.322456 AGCCGGCTGCATCTGTTTTA 60.322 50.000 32.33 0.00 44.83 1.52
2669 3345 1.589716 GAGCCGGCTGCATCTGTTTT 61.590 55.000 38.41 4.41 44.83 2.43
2670 3346 2.034687 AGCCGGCTGCATCTGTTT 59.965 55.556 32.33 0.00 44.83 2.83
2671 3347 2.437359 GAGCCGGCTGCATCTGTT 60.437 61.111 38.41 6.10 44.83 3.16
2672 3348 2.937379 GATGAGCCGGCTGCATCTGT 62.937 60.000 36.10 21.73 44.83 3.41
2673 3349 2.203167 ATGAGCCGGCTGCATCTG 60.203 61.111 38.41 0.00 44.83 2.90
2674 3350 2.110627 GATGAGCCGGCTGCATCT 59.889 61.111 36.10 22.49 44.83 2.90
2675 3351 0.250038 TTAGATGAGCCGGCTGCATC 60.250 55.000 36.31 36.31 44.83 3.91
2676 3352 0.250209 CTTAGATGAGCCGGCTGCAT 60.250 55.000 38.41 32.79 44.83 3.96
2677 3353 1.144716 CTTAGATGAGCCGGCTGCA 59.855 57.895 38.41 29.77 44.83 4.41
2678 3354 2.250237 GCTTAGATGAGCCGGCTGC 61.250 63.158 38.41 25.51 36.66 5.25
2679 3355 4.040068 GCTTAGATGAGCCGGCTG 57.960 61.111 38.41 19.24 36.66 4.85
2696 3372 1.448540 CTCTGCGTGGCCTAGTTGG 60.449 63.158 3.32 0.00 39.35 3.77
2697 3373 2.103042 GCTCTGCGTGGCCTAGTTG 61.103 63.158 3.32 0.00 0.00 3.16
2698 3374 2.266055 GCTCTGCGTGGCCTAGTT 59.734 61.111 3.32 0.00 0.00 2.24
2699 3375 3.775654 GGCTCTGCGTGGCCTAGT 61.776 66.667 3.32 0.00 44.48 2.57
2704 3380 4.840005 GGGTAGGCTCTGCGTGGC 62.840 72.222 0.00 0.00 0.00 5.01
2705 3381 3.077556 AGGGTAGGCTCTGCGTGG 61.078 66.667 0.00 0.00 0.00 4.94
2706 3382 2.185350 CAGGGTAGGCTCTGCGTG 59.815 66.667 0.00 0.00 36.27 5.34
2710 3386 1.673168 GAAATGCAGGGTAGGCTCTG 58.327 55.000 0.00 0.00 45.85 3.35
2711 3387 0.548510 GGAAATGCAGGGTAGGCTCT 59.451 55.000 0.00 0.00 0.00 4.09
2712 3388 0.255890 TGGAAATGCAGGGTAGGCTC 59.744 55.000 0.00 0.00 0.00 4.70
2713 3389 0.929244 ATGGAAATGCAGGGTAGGCT 59.071 50.000 0.00 0.00 0.00 4.58
2714 3390 1.322442 GATGGAAATGCAGGGTAGGC 58.678 55.000 0.00 0.00 0.00 3.93
2715 3391 1.496429 AGGATGGAAATGCAGGGTAGG 59.504 52.381 0.00 0.00 0.00 3.18
2716 3392 3.648067 TCTAGGATGGAAATGCAGGGTAG 59.352 47.826 0.00 0.00 0.00 3.18
2717 3393 3.664320 TCTAGGATGGAAATGCAGGGTA 58.336 45.455 0.00 0.00 0.00 3.69
2718 3394 2.492025 TCTAGGATGGAAATGCAGGGT 58.508 47.619 0.00 0.00 0.00 4.34
2719 3395 3.803186 ATCTAGGATGGAAATGCAGGG 57.197 47.619 0.00 0.00 0.00 4.45
2720 3396 3.750130 CGAATCTAGGATGGAAATGCAGG 59.250 47.826 0.00 0.00 0.00 4.85
2721 3397 3.188048 GCGAATCTAGGATGGAAATGCAG 59.812 47.826 0.00 0.00 0.00 4.41
2722 3398 3.141398 GCGAATCTAGGATGGAAATGCA 58.859 45.455 0.00 0.00 0.00 3.96
2723 3399 3.188048 CAGCGAATCTAGGATGGAAATGC 59.812 47.826 0.00 0.00 0.00 3.56
2724 3400 3.188048 GCAGCGAATCTAGGATGGAAATG 59.812 47.826 0.00 0.00 0.00 2.32
2725 3401 3.072184 AGCAGCGAATCTAGGATGGAAAT 59.928 43.478 0.00 0.00 0.00 2.17
2726 3402 2.435805 AGCAGCGAATCTAGGATGGAAA 59.564 45.455 0.00 0.00 0.00 3.13
2727 3403 2.042464 AGCAGCGAATCTAGGATGGAA 58.958 47.619 0.00 0.00 0.00 3.53
2728 3404 1.342496 CAGCAGCGAATCTAGGATGGA 59.658 52.381 0.00 0.00 0.00 3.41
2729 3405 1.069823 ACAGCAGCGAATCTAGGATGG 59.930 52.381 0.00 0.00 0.00 3.51
2730 3406 2.522836 ACAGCAGCGAATCTAGGATG 57.477 50.000 0.00 0.00 0.00 3.51
2731 3407 2.297597 GGTACAGCAGCGAATCTAGGAT 59.702 50.000 0.00 0.00 0.00 3.24
2732 3408 1.681793 GGTACAGCAGCGAATCTAGGA 59.318 52.381 0.00 0.00 0.00 2.94
2733 3409 1.269831 GGGTACAGCAGCGAATCTAGG 60.270 57.143 0.00 0.00 0.00 3.02
2734 3410 1.409064 TGGGTACAGCAGCGAATCTAG 59.591 52.381 0.00 0.00 0.00 2.43
2735 3411 1.480789 TGGGTACAGCAGCGAATCTA 58.519 50.000 0.00 0.00 0.00 1.98
2736 3412 0.613260 TTGGGTACAGCAGCGAATCT 59.387 50.000 0.00 0.00 0.00 2.40
2737 3413 0.727398 GTTGGGTACAGCAGCGAATC 59.273 55.000 0.00 0.00 0.00 2.52
2738 3414 0.036164 TGTTGGGTACAGCAGCGAAT 59.964 50.000 0.00 0.00 32.57 3.34
2739 3415 0.179043 TTGTTGGGTACAGCAGCGAA 60.179 50.000 0.00 0.00 39.06 4.70
2740 3416 0.882927 GTTGTTGGGTACAGCAGCGA 60.883 55.000 0.00 0.00 39.06 4.93
2741 3417 0.884704 AGTTGTTGGGTACAGCAGCG 60.885 55.000 0.00 0.00 42.32 5.18
2742 3418 1.001378 CAAGTTGTTGGGTACAGCAGC 60.001 52.381 0.00 0.00 40.14 5.25
2743 3419 2.290641 GACAAGTTGTTGGGTACAGCAG 59.709 50.000 10.45 0.00 40.14 4.24
2744 3420 2.294074 GACAAGTTGTTGGGTACAGCA 58.706 47.619 10.45 0.00 40.14 4.41
2745 3421 2.294074 TGACAAGTTGTTGGGTACAGC 58.706 47.619 10.45 0.00 38.19 4.40
2746 3422 5.280945 CAAATGACAAGTTGTTGGGTACAG 58.719 41.667 10.45 0.00 38.19 2.74
2747 3423 4.098654 CCAAATGACAAGTTGTTGGGTACA 59.901 41.667 10.45 2.55 38.07 2.90
2748 3424 4.616953 CCAAATGACAAGTTGTTGGGTAC 58.383 43.478 10.45 0.00 38.07 3.34
2749 3425 3.068873 GCCAAATGACAAGTTGTTGGGTA 59.931 43.478 20.78 4.17 39.33 3.69
2750 3426 2.158971 GCCAAATGACAAGTTGTTGGGT 60.159 45.455 20.78 2.84 39.33 4.51
2751 3427 2.158986 TGCCAAATGACAAGTTGTTGGG 60.159 45.455 20.78 10.07 39.33 4.12
2752 3428 3.176552 TGCCAAATGACAAGTTGTTGG 57.823 42.857 16.86 16.86 41.41 3.77
2753 3429 4.553156 GCAATGCCAAATGACAAGTTGTTG 60.553 41.667 10.45 4.20 39.82 3.33
2754 3430 3.560896 GCAATGCCAAATGACAAGTTGTT 59.439 39.130 10.45 0.00 29.30 2.83
2755 3431 3.132925 GCAATGCCAAATGACAAGTTGT 58.867 40.909 8.61 8.61 29.30 3.32
2756 3432 3.799137 GCAATGCCAAATGACAAGTTG 57.201 42.857 0.00 0.00 0.00 3.16
2823 3499 0.321671 TGCTTACTGGTGCTCCTGTC 59.678 55.000 19.09 7.63 43.24 3.51
2824 3500 0.764890 TTGCTTACTGGTGCTCCTGT 59.235 50.000 19.40 19.40 45.53 4.00
2825 3501 2.119801 ATTGCTTACTGGTGCTCCTG 57.880 50.000 9.87 9.87 38.41 3.86
2826 3502 2.887151 AATTGCTTACTGGTGCTCCT 57.113 45.000 6.34 0.00 34.23 3.69
2827 3503 3.756434 TGTTAATTGCTTACTGGTGCTCC 59.244 43.478 0.00 0.00 0.00 4.70
2828 3504 5.181245 TCTTGTTAATTGCTTACTGGTGCTC 59.819 40.000 0.00 0.00 0.00 4.26
2829 3505 5.070001 TCTTGTTAATTGCTTACTGGTGCT 58.930 37.500 0.00 0.00 0.00 4.40
2830 3506 5.371115 TCTTGTTAATTGCTTACTGGTGC 57.629 39.130 0.00 0.00 0.00 5.01
2831 3507 7.370383 ACATTCTTGTTAATTGCTTACTGGTG 58.630 34.615 0.00 0.00 29.55 4.17
2832 3508 7.524717 ACATTCTTGTTAATTGCTTACTGGT 57.475 32.000 0.00 0.00 29.55 4.00
2833 3509 8.946085 TCTACATTCTTGTTAATTGCTTACTGG 58.054 33.333 0.00 0.00 37.28 4.00
2838 3514 9.066892 TGTCTTCTACATTCTTGTTAATTGCTT 57.933 29.630 0.00 0.00 37.28 3.91
2839 3515 8.621532 TGTCTTCTACATTCTTGTTAATTGCT 57.378 30.769 0.00 0.00 37.28 3.91
2840 3516 7.965107 CCTGTCTTCTACATTCTTGTTAATTGC 59.035 37.037 0.00 0.00 37.50 3.56
2841 3517 8.454106 CCCTGTCTTCTACATTCTTGTTAATTG 58.546 37.037 0.00 0.00 37.50 2.32
2842 3518 7.121315 GCCCTGTCTTCTACATTCTTGTTAATT 59.879 37.037 0.00 0.00 37.50 1.40
2843 3519 6.599638 GCCCTGTCTTCTACATTCTTGTTAAT 59.400 38.462 0.00 0.00 37.50 1.40
2844 3520 5.938125 GCCCTGTCTTCTACATTCTTGTTAA 59.062 40.000 0.00 0.00 37.50 2.01
2845 3521 5.012664 TGCCCTGTCTTCTACATTCTTGTTA 59.987 40.000 0.00 0.00 37.50 2.41
2846 3522 4.202461 TGCCCTGTCTTCTACATTCTTGTT 60.202 41.667 0.00 0.00 37.50 2.83
2847 3523 3.327757 TGCCCTGTCTTCTACATTCTTGT 59.672 43.478 0.00 0.00 37.50 3.16
2848 3524 3.686726 GTGCCCTGTCTTCTACATTCTTG 59.313 47.826 0.00 0.00 37.50 3.02
2849 3525 3.307762 GGTGCCCTGTCTTCTACATTCTT 60.308 47.826 0.00 0.00 37.50 2.52
2850 3526 2.237392 GGTGCCCTGTCTTCTACATTCT 59.763 50.000 0.00 0.00 37.50 2.40
2851 3527 2.633488 GGTGCCCTGTCTTCTACATTC 58.367 52.381 0.00 0.00 37.50 2.67
2852 3528 1.066143 CGGTGCCCTGTCTTCTACATT 60.066 52.381 0.00 0.00 37.50 2.71
2853 3529 0.537188 CGGTGCCCTGTCTTCTACAT 59.463 55.000 0.00 0.00 37.50 2.29
2854 3530 1.541310 CCGGTGCCCTGTCTTCTACA 61.541 60.000 0.00 0.00 36.42 2.74
2855 3531 1.218316 CCGGTGCCCTGTCTTCTAC 59.782 63.158 0.00 0.00 0.00 2.59
2856 3532 0.040058 TACCGGTGCCCTGTCTTCTA 59.960 55.000 19.93 0.00 0.00 2.10
2857 3533 0.834687 TTACCGGTGCCCTGTCTTCT 60.835 55.000 19.93 0.00 0.00 2.85
2858 3534 0.391263 CTTACCGGTGCCCTGTCTTC 60.391 60.000 19.93 0.00 0.00 2.87
2859 3535 1.677552 CTTACCGGTGCCCTGTCTT 59.322 57.895 19.93 0.00 0.00 3.01
2860 3536 2.955881 GCTTACCGGTGCCCTGTCT 61.956 63.158 19.93 0.00 0.00 3.41
2903 3579 3.714144 ACCAGCATACCAGTCTCTAAGT 58.286 45.455 0.00 0.00 0.00 2.24
2940 3616 7.889469 ACATGATTAGGCCATTTATTGTGATC 58.111 34.615 5.01 0.00 0.00 2.92
3039 3716 9.897744 CACTGTTATGTCACATGTTTTTAGAAT 57.102 29.630 0.00 0.00 0.00 2.40
3057 3734 7.231317 CCCATTTGCCTTATGATACACTGTTAT 59.769 37.037 0.00 0.00 0.00 1.89
3115 3793 2.159114 AGAAACACAATGGCGCTTTTGT 60.159 40.909 18.48 18.48 36.53 2.83
3119 3797 2.362077 AGAAAGAAACACAATGGCGCTT 59.638 40.909 7.64 0.00 0.00 4.68
3121 3799 2.422276 AGAAAGAAACACAATGGCGC 57.578 45.000 0.00 0.00 0.00 6.53
3430 5505 3.560025 GGCCGATGATGTCCCTCATTATT 60.560 47.826 0.00 0.00 36.01 1.40
3455 5530 6.785488 TGATTCCAATATGTCGCAATCTAC 57.215 37.500 0.00 0.00 0.00 2.59
3490 5565 4.262506 GCTATCTATTCGGTAAAGGCCTGT 60.263 45.833 5.69 1.77 0.00 4.00
3507 5582 2.106166 CCTTCTGCTTGGATGGCTATCT 59.894 50.000 10.15 0.00 33.68 1.98
3836 6595 6.545298 GCTGATTCTATTTCCTGGAAACTCAT 59.455 38.462 23.29 12.98 34.23 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.