Multiple sequence alignment - TraesCS2A01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G073100 chr2A 100.000 2837 0 0 1 2837 32383541 32386377 0.000000e+00 5240
1 TraesCS2A01G073100 chr2A 98.837 86 1 0 225 310 668087568 668087653 1.360000e-33 154
2 TraesCS2A01G073100 chr2A 97.727 88 2 0 224 311 386732269 386732356 4.900000e-33 152
3 TraesCS2A01G073100 chr2D 90.577 849 66 7 1218 2058 30438721 30439563 0.000000e+00 1112
4 TraesCS2A01G073100 chr2D 88.584 219 18 3 2137 2354 30439565 30439777 2.800000e-65 259
5 TraesCS2A01G073100 chr2D 83.566 286 23 10 428 711 30438459 30438722 2.180000e-61 246
6 TraesCS2A01G073100 chr2D 83.178 214 17 10 2578 2790 30440293 30440488 8.080000e-41 178
7 TraesCS2A01G073100 chr2D 86.923 130 16 1 2 131 30437846 30437974 8.190000e-31 145
8 TraesCS2A01G073100 chr2D 89.011 91 9 1 2461 2551 30439858 30439947 8.310000e-21 111
9 TraesCS2A01G073100 chr2B 87.156 763 52 19 428 1164 49690749 49691491 0.000000e+00 824
10 TraesCS2A01G073100 chr2B 91.312 587 45 2 1156 1742 49691870 49692450 0.000000e+00 797
11 TraesCS2A01G073100 chr7D 76.562 704 101 42 1244 1903 83089038 83089721 7.580000e-86 327
12 TraesCS2A01G073100 chr1A 83.673 196 25 5 31 222 399497140 399497332 8.080000e-41 178
13 TraesCS2A01G073100 chr7A 76.308 325 59 11 1315 1637 450325512 450325204 1.050000e-34 158
14 TraesCS2A01G073100 chr7A 93.814 97 6 0 222 318 519095021 519094925 2.280000e-31 147
15 TraesCS2A01G073100 chr6A 98.851 87 1 0 224 310 279460344 279460430 3.780000e-34 156
16 TraesCS2A01G073100 chr6A 96.667 90 3 0 225 314 61182110 61182199 1.760000e-32 150
17 TraesCS2A01G073100 chr6A 92.079 101 7 1 218 318 558041259 558041358 1.060000e-29 141
18 TraesCS2A01G073100 chr4B 97.727 88 2 0 224 311 463209523 463209610 4.900000e-33 152
19 TraesCS2A01G073100 chr7B 81.437 167 31 0 1315 1481 399877383 399877217 1.370000e-28 137
20 TraesCS2A01G073100 chr4A 89.286 112 9 3 212 321 153650757 153650867 1.370000e-28 137
21 TraesCS2A01G073100 chr1D 88.596 114 10 2 207 319 265533124 265533235 4.930000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G073100 chr2A 32383541 32386377 2836 False 5240.000000 5240 100.000000 1 2837 1 chr2A.!!$F1 2836
1 TraesCS2A01G073100 chr2D 30437846 30440488 2642 False 341.833333 1112 86.973167 2 2790 6 chr2D.!!$F1 2788
2 TraesCS2A01G073100 chr2B 49690749 49692450 1701 False 810.500000 824 89.234000 428 1742 2 chr2B.!!$F1 1314
3 TraesCS2A01G073100 chr7D 83089038 83089721 683 False 327.000000 327 76.562000 1244 1903 1 chr7D.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1210 0.107654 GAAGATTCCGTGGACCTGGG 60.108 60.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2800 3823 0.099791 CTCCGTCTCTCCGAGCTTTC 59.9 60.0 0.0 0.0 0.0 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.791820 CTGCATATGTGTAAAATTTGAAGATGA 57.208 29.630 4.29 0.00 0.00 2.92
72 73 2.988010 TCAATTGCGGTGAGAGCTAT 57.012 45.000 0.00 0.00 35.28 2.97
75 76 3.636764 TCAATTGCGGTGAGAGCTATAGA 59.363 43.478 3.21 0.00 35.28 1.98
113 114 8.500773 ACAATGATTTTGAAAATGATGAACAGC 58.499 29.630 8.03 0.00 0.00 4.40
115 116 8.786826 ATGATTTTGAAAATGATGAACAGCAT 57.213 26.923 8.03 0.00 39.39 3.79
131 132 3.822735 ACAGCATTTGCACTGTTCACTAT 59.177 39.130 5.20 0.00 44.59 2.12
133 134 5.473162 ACAGCATTTGCACTGTTCACTATTA 59.527 36.000 5.20 0.00 44.59 0.98
134 135 6.016360 ACAGCATTTGCACTGTTCACTATTAA 60.016 34.615 5.20 0.00 44.59 1.40
135 136 6.862608 CAGCATTTGCACTGTTCACTATTAAA 59.137 34.615 5.20 0.00 45.16 1.52
136 137 7.381948 CAGCATTTGCACTGTTCACTATTAAAA 59.618 33.333 5.20 0.00 45.16 1.52
137 138 7.925483 AGCATTTGCACTGTTCACTATTAAAAA 59.075 29.630 5.20 0.00 45.16 1.94
138 139 8.711457 GCATTTGCACTGTTCACTATTAAAAAT 58.289 29.630 0.00 0.00 41.59 1.82
140 141 7.636259 TTGCACTGTTCACTATTAAAAATGC 57.364 32.000 0.00 0.00 0.00 3.56
141 142 6.743110 TGCACTGTTCACTATTAAAAATGCA 58.257 32.000 0.00 0.00 35.94 3.96
143 144 6.183359 GCACTGTTCACTATTAAAAATGCACG 60.183 38.462 0.00 0.00 0.00 5.34
145 146 7.589587 CACTGTTCACTATTAAAAATGCACGAA 59.410 33.333 0.00 0.00 0.00 3.85
146 147 7.803189 ACTGTTCACTATTAAAAATGCACGAAG 59.197 33.333 0.00 0.00 0.00 3.79
148 149 8.132362 TGTTCACTATTAAAAATGCACGAAGTT 58.868 29.630 0.00 0.00 41.61 2.66
151 152 7.589587 TCACTATTAAAAATGCACGAAGTTGTG 59.410 33.333 0.00 0.00 41.61 3.33
152 153 7.378461 CACTATTAAAAATGCACGAAGTTGTGT 59.622 33.333 0.00 0.00 41.61 3.72
154 155 6.952935 TTAAAAATGCACGAAGTTGTGTTT 57.047 29.167 0.00 0.00 41.61 2.83
155 156 5.854431 AAAAATGCACGAAGTTGTGTTTT 57.146 30.435 0.00 0.00 41.61 2.43
156 157 5.854431 AAAATGCACGAAGTTGTGTTTTT 57.146 30.435 0.00 5.10 41.61 1.94
157 158 4.838665 AATGCACGAAGTTGTGTTTTTG 57.161 36.364 0.00 0.00 41.61 2.44
158 159 3.290308 TGCACGAAGTTGTGTTTTTGT 57.710 38.095 0.00 0.00 41.61 2.83
159 160 4.421033 TGCACGAAGTTGTGTTTTTGTA 57.579 36.364 0.00 0.00 41.61 2.41
160 161 4.407818 TGCACGAAGTTGTGTTTTTGTAG 58.592 39.130 0.00 0.00 41.61 2.74
161 162 3.239712 GCACGAAGTTGTGTTTTTGTAGC 59.760 43.478 0.00 0.00 41.61 3.58
162 163 4.658071 CACGAAGTTGTGTTTTTGTAGCT 58.342 39.130 0.00 0.00 41.61 3.32
163 164 4.728608 CACGAAGTTGTGTTTTTGTAGCTC 59.271 41.667 0.00 0.00 41.61 4.09
164 165 4.634443 ACGAAGTTGTGTTTTTGTAGCTCT 59.366 37.500 0.00 0.00 37.78 4.09
165 166 4.963953 CGAAGTTGTGTTTTTGTAGCTCTG 59.036 41.667 0.00 0.00 0.00 3.35
166 167 5.220586 CGAAGTTGTGTTTTTGTAGCTCTGA 60.221 40.000 0.00 0.00 0.00 3.27
167 168 5.485662 AGTTGTGTTTTTGTAGCTCTGAC 57.514 39.130 0.00 0.00 0.00 3.51
168 169 4.335594 AGTTGTGTTTTTGTAGCTCTGACC 59.664 41.667 0.00 0.00 0.00 4.02
169 170 3.879998 TGTGTTTTTGTAGCTCTGACCA 58.120 40.909 0.00 0.00 0.00 4.02
171 172 4.275689 TGTGTTTTTGTAGCTCTGACCATG 59.724 41.667 0.00 0.00 0.00 3.66
172 173 4.515191 GTGTTTTTGTAGCTCTGACCATGA 59.485 41.667 0.00 0.00 0.00 3.07
174 175 5.181811 TGTTTTTGTAGCTCTGACCATGATG 59.818 40.000 0.00 0.00 0.00 3.07
175 176 4.558226 TTTGTAGCTCTGACCATGATGT 57.442 40.909 0.00 0.00 0.00 3.06
177 178 4.926140 TGTAGCTCTGACCATGATGTAG 57.074 45.455 0.00 0.00 0.00 2.74
178 179 4.281657 TGTAGCTCTGACCATGATGTAGT 58.718 43.478 0.00 0.00 0.00 2.73
179 180 4.339530 TGTAGCTCTGACCATGATGTAGTC 59.660 45.833 0.00 0.00 0.00 2.59
180 181 3.369175 AGCTCTGACCATGATGTAGTCA 58.631 45.455 0.00 4.80 42.06 3.41
182 183 4.039004 AGCTCTGACCATGATGTAGTCATC 59.961 45.833 5.24 1.80 45.76 2.92
195 196 4.939271 TGTAGTCATCGTCAAACTTCACA 58.061 39.130 0.00 0.00 0.00 3.58
196 197 4.743151 TGTAGTCATCGTCAAACTTCACAC 59.257 41.667 0.00 0.00 0.00 3.82
198 199 3.555956 AGTCATCGTCAAACTTCACACAC 59.444 43.478 0.00 0.00 0.00 3.82
199 200 3.308595 GTCATCGTCAAACTTCACACACA 59.691 43.478 0.00 0.00 0.00 3.72
201 202 3.942539 TCGTCAAACTTCACACACATG 57.057 42.857 0.00 0.00 0.00 3.21
202 203 3.266636 TCGTCAAACTTCACACACATGT 58.733 40.909 0.00 0.00 40.80 3.21
204 205 4.870991 TCGTCAAACTTCACACACATGTAA 59.129 37.500 0.00 0.00 36.72 2.41
207 208 6.690957 CGTCAAACTTCACACACATGTAAAAT 59.309 34.615 0.00 0.00 36.72 1.82
208 209 7.305361 CGTCAAACTTCACACACATGTAAAATG 60.305 37.037 0.00 0.00 36.72 2.32
209 210 6.475076 TCAAACTTCACACACATGTAAAATGC 59.525 34.615 0.00 0.00 36.72 3.56
210 211 5.512753 ACTTCACACACATGTAAAATGCA 57.487 34.783 0.00 0.00 36.72 3.96
211 212 6.088016 ACTTCACACACATGTAAAATGCAT 57.912 33.333 0.00 0.00 36.72 3.96
212 213 6.151691 ACTTCACACACATGTAAAATGCATC 58.848 36.000 0.00 0.00 36.72 3.91
213 214 5.058149 TCACACACATGTAAAATGCATCC 57.942 39.130 0.00 0.00 36.72 3.51
215 216 5.185442 TCACACACATGTAAAATGCATCCAT 59.815 36.000 0.00 0.00 36.72 3.41
217 218 7.068470 TCACACACATGTAAAATGCATCCATAT 59.932 33.333 0.00 0.00 36.72 1.78
218 219 8.351461 CACACACATGTAAAATGCATCCATATA 58.649 33.333 0.00 0.00 36.72 0.86
221 222 9.748708 ACACATGTAAAATGCATCCATATAAAC 57.251 29.630 0.00 0.00 0.00 2.01
231 232 7.801716 TGCATCCATATAAACTTGTACTTCC 57.198 36.000 0.00 0.00 0.00 3.46
232 233 7.573710 TGCATCCATATAAACTTGTACTTCCT 58.426 34.615 0.00 0.00 0.00 3.36
233 234 7.715249 TGCATCCATATAAACTTGTACTTCCTC 59.285 37.037 0.00 0.00 0.00 3.71
234 235 7.173390 GCATCCATATAAACTTGTACTTCCTCC 59.827 40.741 0.00 0.00 0.00 4.30
236 237 6.381994 TCCATATAAACTTGTACTTCCTCCGT 59.618 38.462 0.00 0.00 0.00 4.69
237 238 7.560991 TCCATATAAACTTGTACTTCCTCCGTA 59.439 37.037 0.00 0.00 0.00 4.02
238 239 8.199449 CCATATAAACTTGTACTTCCTCCGTAA 58.801 37.037 0.00 0.00 0.00 3.18
241 242 5.541953 AACTTGTACTTCCTCCGTAAACT 57.458 39.130 0.00 0.00 0.00 2.66
242 243 6.655078 AACTTGTACTTCCTCCGTAAACTA 57.345 37.500 0.00 0.00 0.00 2.24
245 246 8.353423 ACTTGTACTTCCTCCGTAAACTAATA 57.647 34.615 0.00 0.00 0.00 0.98
246 247 8.975295 ACTTGTACTTCCTCCGTAAACTAATAT 58.025 33.333 0.00 0.00 0.00 1.28
306 307 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
319 320 9.232473 AGTTTACAGAGGGAGTATGAATTTTTC 57.768 33.333 0.00 0.00 0.00 2.29
320 321 9.010029 GTTTACAGAGGGAGTATGAATTTTTCA 57.990 33.333 0.00 0.00 45.01 2.69
321 322 8.792830 TTACAGAGGGAGTATGAATTTTTCAG 57.207 34.615 0.00 0.00 43.98 3.02
322 323 6.183347 ACAGAGGGAGTATGAATTTTTCAGG 58.817 40.000 0.00 0.00 43.98 3.86
323 324 6.012508 ACAGAGGGAGTATGAATTTTTCAGGA 60.013 38.462 0.00 0.00 43.98 3.86
327 328 8.670521 AGGGAGTATGAATTTTTCAGGATTTT 57.329 30.769 0.00 0.00 43.98 1.82
387 454 9.705290 AAAAAGCTCCGTAAATTGTATGAATTT 57.295 25.926 0.00 0.00 34.55 1.82
389 456 9.705290 AAAGCTCCGTAAATTGTATGAATTTTT 57.295 25.926 0.00 0.00 32.64 1.94
476 693 9.200817 AGAAAAAGAAATAATAATAGCTGGGCA 57.799 29.630 0.00 0.00 0.00 5.36
499 716 2.378634 GCATACAGCCCAGGGAGGT 61.379 63.158 10.89 8.84 37.23 3.85
500 717 1.832912 CATACAGCCCAGGGAGGTC 59.167 63.158 10.89 0.00 34.66 3.85
503 720 2.856039 TACAGCCCAGGGAGGTCGAG 62.856 65.000 10.89 0.00 34.66 4.04
509 726 4.095400 AGGGAGGTCGAGGCCCAT 62.095 66.667 16.89 0.00 44.55 4.00
510 727 3.551407 GGGAGGTCGAGGCCCATC 61.551 72.222 0.00 0.00 41.64 3.51
511 728 2.764128 GGAGGTCGAGGCCCATCA 60.764 66.667 0.00 0.00 0.00 3.07
542 759 4.680537 ACCAGGACGACGCCTCCT 62.681 66.667 7.71 4.67 38.84 3.69
544 761 4.803426 CAGGACGACGCCTCCTGC 62.803 72.222 18.34 0.00 46.53 4.85
547 764 4.500116 GACGACGCCTCCTGCCTC 62.500 72.222 0.00 0.00 36.24 4.70
553 770 4.416738 GCCTCCTGCCTCCACACC 62.417 72.222 0.00 0.00 0.00 4.16
555 772 2.667418 CTCCTGCCTCCACACCAG 59.333 66.667 0.00 0.00 0.00 4.00
560 777 2.281484 GCCTCCACACCAGCGAAA 60.281 61.111 0.00 0.00 0.00 3.46
566 783 0.240945 CCACACCAGCGAAACAATCC 59.759 55.000 0.00 0.00 0.00 3.01
620 843 3.851128 GCCGGCTCCCAGTCCTAC 61.851 72.222 22.15 0.00 0.00 3.18
647 876 2.546494 CGATCAATCGCCAAGCCCC 61.546 63.158 0.00 0.00 43.84 5.80
651 880 3.717294 AATCGCCAAGCCCCGAGT 61.717 61.111 0.00 0.00 36.86 4.18
724 953 1.468520 CGGCATCACCTTTACCTTGTG 59.531 52.381 0.00 0.00 35.61 3.33
774 1003 1.449778 GGAAGGTAAGCCTGTCGCC 60.450 63.158 0.00 0.00 46.33 5.54
780 1009 3.064987 TAAGCCTGTCGCCGAGCTC 62.065 63.158 2.73 2.73 38.78 4.09
798 1027 3.963687 CTGGCCGTCATCAGCAGCA 62.964 63.158 0.00 0.00 0.00 4.41
800 1029 3.873883 GCCGTCATCAGCAGCAGC 61.874 66.667 0.00 0.00 42.56 5.25
823 1052 1.446272 CGTCTCCGGCCAAGAAGAC 60.446 63.158 2.24 8.57 0.00 3.01
824 1053 1.446272 GTCTCCGGCCAAGAAGACG 60.446 63.158 2.24 0.00 0.00 4.18
917 1160 1.254954 AGTACTTCGTCTCGGCCTTT 58.745 50.000 0.00 0.00 0.00 3.11
966 1209 0.460284 CGAAGATTCCGTGGACCTGG 60.460 60.000 0.00 0.00 0.00 4.45
967 1210 0.107654 GAAGATTCCGTGGACCTGGG 60.108 60.000 0.00 0.00 0.00 4.45
968 1211 0.840722 AAGATTCCGTGGACCTGGGT 60.841 55.000 0.00 0.00 0.00 4.51
969 1212 1.221021 GATTCCGTGGACCTGGGTC 59.779 63.158 11.03 11.03 43.87 4.46
1047 1290 2.282180 TTCGGCCCTTGGAAGCAC 60.282 61.111 0.00 0.00 0.00 4.40
1062 1305 4.263572 CACCAAGGCGACCACCCA 62.264 66.667 0.00 0.00 0.00 4.51
1113 1356 1.576421 CGGCAAGAAGCTGTTCACC 59.424 57.895 0.00 0.00 44.86 4.02
1116 1359 0.595095 GCAAGAAGCTGTTCACCCTG 59.405 55.000 0.00 0.00 41.15 4.45
1131 1374 2.811317 CTGAGCACGGCGTCCTTC 60.811 66.667 10.85 8.83 0.00 3.46
1142 1385 0.593773 GCGTCCTTCGAGATGCTCTC 60.594 60.000 10.70 3.80 43.96 3.20
1144 1387 1.398692 GTCCTTCGAGATGCTCTCCT 58.601 55.000 7.36 0.00 40.34 3.69
1148 1391 1.753649 CTTCGAGATGCTCTCCTTGGA 59.246 52.381 7.36 0.00 40.34 3.53
1164 1407 3.054802 CCTTGGAGCATATCATCTACCCC 60.055 52.174 0.00 0.00 0.00 4.95
1165 1408 2.551270 TGGAGCATATCATCTACCCCC 58.449 52.381 0.00 0.00 0.00 5.40
1191 1821 3.130280 TCATATTGCAGCATGGATCGT 57.870 42.857 0.00 0.00 35.22 3.73
1199 1829 1.373497 GCATGGATCGTAGCCTCCG 60.373 63.158 0.00 0.00 32.76 4.63
1200 1830 1.373497 CATGGATCGTAGCCTCCGC 60.373 63.158 0.00 0.00 32.76 5.54
1212 1842 4.135153 CTCCGCTGGTCGTGGGAG 62.135 72.222 0.00 0.00 43.71 4.30
1298 1928 0.617413 ACCTTCCTCATCAGCACCAG 59.383 55.000 0.00 0.00 0.00 4.00
1335 1971 1.300620 CACCTTCGCCTTCGACACA 60.301 57.895 0.00 0.00 45.43 3.72
1638 2280 4.135493 GAGCGCGTCTTCGTTGCC 62.135 66.667 8.43 0.00 39.80 4.52
1670 2339 0.103937 CTCGTTGAGGAGGGAGATGC 59.896 60.000 0.00 0.00 0.00 3.91
1799 2474 2.784347 GCCTGAAGCAACCTCTAAGTT 58.216 47.619 0.00 0.00 42.97 2.66
1872 2547 8.255111 TCATGTCATGATTATCAGTTCCTACT 57.745 34.615 11.62 0.00 33.59 2.57
1921 2596 1.890979 CTCATGTCATGGAGCGCCC 60.891 63.158 12.90 5.76 0.00 6.13
1933 2610 0.461339 GAGCGCCCGTCTATTTGGAA 60.461 55.000 2.29 0.00 0.00 3.53
1935 2612 1.021968 GCGCCCGTCTATTTGGAATT 58.978 50.000 0.00 0.00 0.00 2.17
1936 2613 1.002792 GCGCCCGTCTATTTGGAATTC 60.003 52.381 0.00 0.00 0.00 2.17
1996 2675 8.696043 AATTGTATTTGCATCTATGGCTCTAA 57.304 30.769 0.00 0.00 0.00 2.10
2030 2709 7.015584 AGCAACAGGAAAGAGGTGAATTTTAAT 59.984 33.333 0.00 0.00 0.00 1.40
2058 2737 3.125658 ACACAAACGTGTACCAACAGAAC 59.874 43.478 0.00 0.00 45.80 3.01
2059 2738 3.125487 CACAAACGTGTACCAACAGAACA 59.875 43.478 0.00 0.00 35.72 3.18
2060 2739 3.752222 ACAAACGTGTACCAACAGAACAA 59.248 39.130 0.00 0.00 35.72 2.83
2061 2740 4.092816 CAAACGTGTACCAACAGAACAAC 58.907 43.478 0.00 0.00 35.91 3.32
2062 2741 2.975266 ACGTGTACCAACAGAACAACA 58.025 42.857 0.00 0.00 35.91 3.33
2063 2742 3.336468 ACGTGTACCAACAGAACAACAA 58.664 40.909 0.00 0.00 35.91 2.83
2064 2743 3.942748 ACGTGTACCAACAGAACAACAAT 59.057 39.130 0.00 0.00 35.91 2.71
2065 2744 5.117584 ACGTGTACCAACAGAACAACAATA 58.882 37.500 0.00 0.00 35.91 1.90
2066 2745 5.761234 ACGTGTACCAACAGAACAACAATAT 59.239 36.000 0.00 0.00 35.91 1.28
2067 2746 6.930164 ACGTGTACCAACAGAACAACAATATA 59.070 34.615 0.00 0.00 35.91 0.86
2068 2747 7.117236 ACGTGTACCAACAGAACAACAATATAG 59.883 37.037 0.00 0.00 35.91 1.31
2069 2748 7.117236 CGTGTACCAACAGAACAACAATATAGT 59.883 37.037 0.00 0.00 35.91 2.12
2070 2749 9.426837 GTGTACCAACAGAACAACAATATAGTA 57.573 33.333 0.00 0.00 35.91 1.82
2071 2750 9.426837 TGTACCAACAGAACAACAATATAGTAC 57.573 33.333 0.00 0.00 0.00 2.73
2072 2751 9.649167 GTACCAACAGAACAACAATATAGTACT 57.351 33.333 0.00 0.00 0.00 2.73
2074 2753 9.649167 ACCAACAGAACAACAATATAGTACTAC 57.351 33.333 4.31 0.00 0.00 2.73
2075 2754 9.871238 CCAACAGAACAACAATATAGTACTACT 57.129 33.333 4.31 0.00 0.00 2.57
2089 2768 5.952347 AGTACTACTTTTACTGGGATGGG 57.048 43.478 0.00 0.00 0.00 4.00
2090 2769 5.347978 AGTACTACTTTTACTGGGATGGGT 58.652 41.667 0.00 0.00 0.00 4.51
2091 2770 4.569719 ACTACTTTTACTGGGATGGGTG 57.430 45.455 0.00 0.00 0.00 4.61
2092 2771 3.914435 ACTACTTTTACTGGGATGGGTGT 59.086 43.478 0.00 0.00 0.00 4.16
2093 2772 3.895704 ACTTTTACTGGGATGGGTGTT 57.104 42.857 0.00 0.00 0.00 3.32
2094 2773 3.763057 ACTTTTACTGGGATGGGTGTTC 58.237 45.455 0.00 0.00 0.00 3.18
2095 2774 3.139397 ACTTTTACTGGGATGGGTGTTCA 59.861 43.478 0.00 0.00 0.00 3.18
2096 2775 4.202673 ACTTTTACTGGGATGGGTGTTCAT 60.203 41.667 0.00 0.00 0.00 2.57
2097 2776 3.644966 TTACTGGGATGGGTGTTCATC 57.355 47.619 0.00 0.00 41.93 2.92
2103 2782 2.787473 GATGGGTGTTCATCCACTGA 57.213 50.000 6.96 0.00 38.00 3.41
2104 2783 2.359900 GATGGGTGTTCATCCACTGAC 58.640 52.381 6.96 0.00 38.00 3.51
2105 2784 0.400213 TGGGTGTTCATCCACTGACC 59.600 55.000 0.10 0.00 35.63 4.02
2106 2785 0.693049 GGGTGTTCATCCACTGACCT 59.307 55.000 0.00 0.00 35.63 3.85
2107 2786 1.073923 GGGTGTTCATCCACTGACCTT 59.926 52.381 0.00 0.00 35.63 3.50
2108 2787 2.489073 GGGTGTTCATCCACTGACCTTT 60.489 50.000 0.00 0.00 35.63 3.11
2109 2788 3.222603 GGTGTTCATCCACTGACCTTTT 58.777 45.455 0.00 0.00 35.63 2.27
2110 2789 3.636764 GGTGTTCATCCACTGACCTTTTT 59.363 43.478 0.00 0.00 35.63 1.94
2134 2813 9.465985 TTTTTCGGGAAAACACTTGTATTAATC 57.534 29.630 6.11 0.00 39.70 1.75
2135 2814 7.747155 TTCGGGAAAACACTTGTATTAATCA 57.253 32.000 0.00 0.00 0.00 2.57
2139 2818 7.962918 CGGGAAAACACTTGTATTAATCAAGAG 59.037 37.037 23.11 19.50 43.17 2.85
2160 2839 7.496346 AGAGGTAGGATTACAATCAGTTTCA 57.504 36.000 4.45 0.00 37.15 2.69
2176 2855 6.591935 TCAGTTTCACAAAGTCTAATGACCT 58.408 36.000 0.00 0.00 43.91 3.85
2200 2879 1.799933 AGGTCCTGATCCTAGCCAAG 58.200 55.000 0.00 0.00 33.04 3.61
2202 2881 0.107643 GTCCTGATCCTAGCCAAGGC 59.892 60.000 2.02 2.02 46.10 4.35
2203 2882 0.326522 TCCTGATCCTAGCCAAGGCA 60.327 55.000 14.40 0.00 46.10 4.75
2204 2883 0.108207 CCTGATCCTAGCCAAGGCAG 59.892 60.000 14.40 8.49 46.10 4.85
2222 2901 3.823304 GGCAGACAGATTCAACTTTCCTT 59.177 43.478 0.00 0.00 0.00 3.36
2248 2927 4.014406 TCTTCTTTAATTTCCTTCGGGGC 58.986 43.478 0.00 0.00 35.37 5.80
2251 2930 1.004436 TTAATTTCCTTCGGGGCCCT 58.996 50.000 24.38 0.00 35.37 5.19
2252 2931 1.004436 TAATTTCCTTCGGGGCCCTT 58.996 50.000 24.38 7.08 35.37 3.95
2253 2932 0.614697 AATTTCCTTCGGGGCCCTTG 60.615 55.000 24.38 15.37 35.37 3.61
2282 2962 1.407989 CCTCTTCTTCTCCATGGTGCC 60.408 57.143 12.58 0.00 0.00 5.01
2283 2963 1.280133 CTCTTCTTCTCCATGGTGCCA 59.720 52.381 12.58 0.00 0.00 4.92
2289 2969 0.250858 TCTCCATGGTGCCACAACAG 60.251 55.000 12.58 0.00 33.31 3.16
2290 2970 1.870055 CTCCATGGTGCCACAACAGC 61.870 60.000 12.58 0.00 33.31 4.40
2292 2972 1.287815 CATGGTGCCACAACAGCTG 59.712 57.895 13.48 13.48 33.31 4.24
2296 2976 1.141449 GTGCCACAACAGCTGCAAA 59.859 52.632 15.27 0.00 35.16 3.68
2298 2978 1.036481 TGCCACAACAGCTGCAAAGA 61.036 50.000 15.27 0.00 0.00 2.52
2299 2979 0.102844 GCCACAACAGCTGCAAAGAA 59.897 50.000 15.27 0.00 0.00 2.52
2322 3002 0.465705 TGGATCTCTCGGATTGGTGC 59.534 55.000 0.00 0.00 34.33 5.01
2350 3030 0.617413 AGCTCAGGTTGGAGGTGATG 59.383 55.000 0.00 0.00 43.51 3.07
2354 3034 1.630369 TCAGGTTGGAGGTGATGGAAG 59.370 52.381 0.00 0.00 0.00 3.46
2355 3035 0.995024 AGGTTGGAGGTGATGGAAGG 59.005 55.000 0.00 0.00 0.00 3.46
2356 3036 0.681243 GGTTGGAGGTGATGGAAGGC 60.681 60.000 0.00 0.00 0.00 4.35
2357 3037 1.026718 GTTGGAGGTGATGGAAGGCG 61.027 60.000 0.00 0.00 0.00 5.52
2358 3038 2.514824 GGAGGTGATGGAAGGCGC 60.515 66.667 0.00 0.00 0.00 6.53
2359 3039 2.586792 GAGGTGATGGAAGGCGCT 59.413 61.111 7.64 0.00 0.00 5.92
2366 3052 2.262471 GATGGAAGGCGCTGCACAAG 62.262 60.000 7.64 0.00 0.00 3.16
2370 3056 1.510480 GAAGGCGCTGCACAAGAACT 61.510 55.000 7.64 0.00 0.00 3.01
2378 3064 3.968724 CGCTGCACAAGAACTAAGTTTTC 59.031 43.478 0.00 0.00 0.00 2.29
2379 3065 3.968724 GCTGCACAAGAACTAAGTTTTCG 59.031 43.478 0.00 0.00 0.00 3.46
2380 3066 4.260620 GCTGCACAAGAACTAAGTTTTCGA 60.261 41.667 0.00 0.00 0.00 3.71
2381 3067 5.560953 GCTGCACAAGAACTAAGTTTTCGAT 60.561 40.000 0.00 0.00 0.00 3.59
2382 3068 5.747565 TGCACAAGAACTAAGTTTTCGATG 58.252 37.500 0.00 0.00 0.00 3.84
2383 3069 5.295787 TGCACAAGAACTAAGTTTTCGATGT 59.704 36.000 0.00 0.00 31.90 3.06
2384 3070 5.621228 GCACAAGAACTAAGTTTTCGATGTG 59.379 40.000 16.67 16.67 42.44 3.21
2385 3071 5.621228 CACAAGAACTAAGTTTTCGATGTGC 59.379 40.000 12.33 0.00 38.09 4.57
2386 3072 5.147162 CAAGAACTAAGTTTTCGATGTGCC 58.853 41.667 0.00 0.00 0.00 5.01
2387 3073 4.385825 AGAACTAAGTTTTCGATGTGCCA 58.614 39.130 0.00 0.00 0.00 4.92
2388 3074 5.003804 AGAACTAAGTTTTCGATGTGCCAT 58.996 37.500 0.00 0.00 0.00 4.40
2389 3075 4.685169 ACTAAGTTTTCGATGTGCCATG 57.315 40.909 0.00 0.00 0.00 3.66
2390 3076 2.352503 AAGTTTTCGATGTGCCATGC 57.647 45.000 0.00 0.00 0.00 4.06
2391 3077 1.538047 AGTTTTCGATGTGCCATGCT 58.462 45.000 0.00 0.00 0.00 3.79
2392 3078 2.710377 AGTTTTCGATGTGCCATGCTA 58.290 42.857 0.00 0.00 0.00 3.49
2393 3079 2.420022 AGTTTTCGATGTGCCATGCTAC 59.580 45.455 0.00 0.00 0.00 3.58
2394 3080 1.006086 TTTCGATGTGCCATGCTACG 58.994 50.000 0.00 0.00 0.00 3.51
2395 3081 1.428370 TTCGATGTGCCATGCTACGC 61.428 55.000 0.00 0.00 0.00 4.42
2396 3082 2.173020 CGATGTGCCATGCTACGCA 61.173 57.895 0.00 0.00 44.86 5.24
2405 3091 3.889227 TGCTACGCATGAACCAGC 58.111 55.556 0.00 0.00 31.71 4.85
2406 3092 1.296392 TGCTACGCATGAACCAGCT 59.704 52.632 0.00 0.00 31.71 4.24
2407 3093 0.740868 TGCTACGCATGAACCAGCTC 60.741 55.000 0.00 0.00 31.71 4.09
2408 3094 0.460987 GCTACGCATGAACCAGCTCT 60.461 55.000 0.00 0.00 0.00 4.09
2409 3095 1.284657 CTACGCATGAACCAGCTCTG 58.715 55.000 0.00 0.00 0.00 3.35
2410 3096 0.608130 TACGCATGAACCAGCTCTGT 59.392 50.000 0.00 0.00 0.00 3.41
2411 3097 0.952497 ACGCATGAACCAGCTCTGTG 60.952 55.000 0.00 0.00 0.00 3.66
2412 3098 1.642037 CGCATGAACCAGCTCTGTGG 61.642 60.000 0.00 0.00 44.01 4.17
2413 3099 1.930908 GCATGAACCAGCTCTGTGGC 61.931 60.000 0.00 0.00 41.90 5.01
2414 3100 1.001641 ATGAACCAGCTCTGTGGCC 60.002 57.895 0.00 0.00 41.90 5.36
2415 3101 1.782201 ATGAACCAGCTCTGTGGCCA 61.782 55.000 0.00 0.00 41.90 5.36
2416 3102 1.673665 GAACCAGCTCTGTGGCCAG 60.674 63.158 5.11 0.00 41.90 4.85
2417 3103 3.201707 AACCAGCTCTGTGGCCAGG 62.202 63.158 5.11 4.08 41.90 4.45
2418 3104 3.644606 CCAGCTCTGTGGCCAGGT 61.645 66.667 5.11 0.00 39.31 4.00
2419 3105 2.293318 CCAGCTCTGTGGCCAGGTA 61.293 63.158 5.11 0.00 39.31 3.08
2420 3106 1.679311 CAGCTCTGTGGCCAGGTAA 59.321 57.895 5.11 0.00 39.31 2.85
2421 3107 0.254178 CAGCTCTGTGGCCAGGTAAT 59.746 55.000 5.11 0.00 39.31 1.89
2422 3108 0.995024 AGCTCTGTGGCCAGGTAATT 59.005 50.000 5.11 0.00 39.31 1.40
2423 3109 2.092968 CAGCTCTGTGGCCAGGTAATTA 60.093 50.000 5.11 0.00 39.31 1.40
2424 3110 2.171448 AGCTCTGTGGCCAGGTAATTAG 59.829 50.000 5.11 0.00 39.31 1.73
2425 3111 2.092914 GCTCTGTGGCCAGGTAATTAGT 60.093 50.000 5.11 0.00 39.31 2.24
2426 3112 3.622455 GCTCTGTGGCCAGGTAATTAGTT 60.622 47.826 5.11 0.00 39.31 2.24
2427 3113 4.383770 GCTCTGTGGCCAGGTAATTAGTTA 60.384 45.833 5.11 0.00 39.31 2.24
2428 3114 5.093849 TCTGTGGCCAGGTAATTAGTTAC 57.906 43.478 5.11 0.00 39.31 2.50
2429 3115 4.532916 TCTGTGGCCAGGTAATTAGTTACA 59.467 41.667 5.11 0.00 41.59 2.41
2462 3148 9.838339 ACCTGAACAAGAGTTTAAGGATATATG 57.162 33.333 14.26 0.00 41.15 1.78
2463 3149 9.277783 CCTGAACAAGAGTTTAAGGATATATGG 57.722 37.037 0.00 0.00 41.15 2.74
2464 3150 9.838339 CTGAACAAGAGTTTAAGGATATATGGT 57.162 33.333 0.00 0.00 38.30 3.55
2483 3186 5.616488 TGGTAAGAAAATAAAGGTCGTGC 57.384 39.130 0.00 0.00 0.00 5.34
2487 3190 6.036408 GGTAAGAAAATAAAGGTCGTGCGTAT 59.964 38.462 0.00 0.00 0.00 3.06
2491 3194 6.591062 AGAAAATAAAGGTCGTGCGTATACAA 59.409 34.615 3.32 0.00 0.00 2.41
2501 3204 5.503376 GTCGTGCGTATACAAATTTCTGTTG 59.497 40.000 3.32 0.00 0.00 3.33
2505 3208 7.201149 CGTGCGTATACAAATTTCTGTTGAAAG 60.201 37.037 3.32 0.00 44.25 2.62
2520 3223 2.459644 TGAAAGGCTTGGCATATGCTT 58.540 42.857 26.12 11.40 41.70 3.91
2551 3254 4.521256 GGTTAACTACCCAAGCAACATTCA 59.479 41.667 5.42 0.00 41.43 2.57
2554 3257 7.094118 GGTTAACTACCCAAGCAACATTCATAA 60.094 37.037 5.42 0.00 41.43 1.90
2555 3258 8.466798 GTTAACTACCCAAGCAACATTCATAAT 58.533 33.333 0.00 0.00 0.00 1.28
2556 3259 7.480760 AACTACCCAAGCAACATTCATAATT 57.519 32.000 0.00 0.00 0.00 1.40
2560 3263 5.933463 ACCCAAGCAACATTCATAATTTGTG 59.067 36.000 0.00 0.00 0.00 3.33
2561 3264 5.352016 CCCAAGCAACATTCATAATTTGTGG 59.648 40.000 0.00 0.00 0.00 4.17
2562 3265 6.164876 CCAAGCAACATTCATAATTTGTGGA 58.835 36.000 0.00 0.00 0.00 4.02
2563 3266 6.819649 CCAAGCAACATTCATAATTTGTGGAT 59.180 34.615 0.00 0.00 0.00 3.41
2564 3267 7.010738 CCAAGCAACATTCATAATTTGTGGATC 59.989 37.037 0.00 0.00 0.00 3.36
2565 3268 6.267817 AGCAACATTCATAATTTGTGGATCG 58.732 36.000 0.00 0.00 0.00 3.69
2567 3270 6.020440 GCAACATTCATAATTTGTGGATCGTG 60.020 38.462 0.00 0.00 0.00 4.35
2569 3272 7.572523 ACATTCATAATTTGTGGATCGTGAT 57.427 32.000 0.00 0.00 0.00 3.06
2570 3273 8.675705 ACATTCATAATTTGTGGATCGTGATA 57.324 30.769 0.00 0.00 0.00 2.15
2571 3274 9.119418 ACATTCATAATTTGTGGATCGTGATAA 57.881 29.630 0.00 0.00 0.00 1.75
2575 3278 8.495148 TCATAATTTGTGGATCGTGATAATTCG 58.505 33.333 0.00 0.00 0.00 3.34
2576 3279 6.677781 AATTTGTGGATCGTGATAATTCGT 57.322 33.333 0.00 0.00 0.00 3.85
2581 3603 6.277605 TGTGGATCGTGATAATTCGTAATGT 58.722 36.000 0.00 0.00 0.00 2.71
2584 3606 6.157211 GGATCGTGATAATTCGTAATGTCCT 58.843 40.000 0.00 0.00 0.00 3.85
2588 3610 5.518847 CGTGATAATTCGTAATGTCCTGTGT 59.481 40.000 0.00 0.00 0.00 3.72
2639 3661 9.950680 ACATGAAGACACTAACAAAACATTAAG 57.049 29.630 0.00 0.00 0.00 1.85
2645 3667 8.076178 AGACACTAACAAAACATTAAGCATCAC 58.924 33.333 0.00 0.00 0.00 3.06
2654 3676 8.577939 CAAAACATTAAGCATCACTGTAATTCG 58.422 33.333 0.00 0.00 0.00 3.34
2664 3686 6.402816 CATCACTGTAATTCGTAATGTGTCG 58.597 40.000 0.00 0.00 0.00 4.35
2667 3689 4.687018 ACTGTAATTCGTAATGTGTCGCAA 59.313 37.500 0.00 0.00 0.00 4.85
2674 3696 2.607635 CGTAATGTGTCGCAAGGCTTAT 59.392 45.455 0.00 0.00 46.88 1.73
2683 3705 2.101750 TCGCAAGGCTTATGACGGAATA 59.898 45.455 0.00 0.00 38.47 1.75
2685 3707 2.224314 GCAAGGCTTATGACGGAATAGC 59.776 50.000 0.00 0.00 0.00 2.97
2688 3710 2.059541 GGCTTATGACGGAATAGCGAC 58.940 52.381 0.00 0.00 0.00 5.19
2718 3741 8.768501 ATTGTCTTATGATAGACTGGTAGTGA 57.231 34.615 0.00 0.00 43.92 3.41
2719 3742 8.768501 TTGTCTTATGATAGACTGGTAGTGAT 57.231 34.615 0.00 0.00 43.92 3.06
2720 3743 9.862149 TTGTCTTATGATAGACTGGTAGTGATA 57.138 33.333 0.00 0.00 43.92 2.15
2721 3744 9.508642 TGTCTTATGATAGACTGGTAGTGATAG 57.491 37.037 0.00 0.00 43.92 2.08
2722 3745 9.509956 GTCTTATGATAGACTGGTAGTGATAGT 57.490 37.037 0.00 0.00 41.07 2.12
2727 3750 8.905660 TGATAGACTGGTAGTGATAGTAAGAC 57.094 38.462 0.00 0.00 0.00 3.01
2728 3751 8.491958 TGATAGACTGGTAGTGATAGTAAGACA 58.508 37.037 0.00 0.00 0.00 3.41
2729 3752 8.680039 ATAGACTGGTAGTGATAGTAAGACAC 57.320 38.462 0.00 0.00 35.15 3.67
2734 3757 3.784701 AGTGATAGTAAGACACTGGCG 57.215 47.619 0.00 0.00 42.18 5.69
2790 3813 1.001378 GCGTGACAAAATGGAAGCAGT 60.001 47.619 0.00 0.00 0.00 4.40
2791 3814 2.225491 GCGTGACAAAATGGAAGCAGTA 59.775 45.455 0.00 0.00 0.00 2.74
2792 3815 3.119849 GCGTGACAAAATGGAAGCAGTAT 60.120 43.478 0.00 0.00 0.00 2.12
2793 3816 4.094294 GCGTGACAAAATGGAAGCAGTATA 59.906 41.667 0.00 0.00 0.00 1.47
2794 3817 5.391523 GCGTGACAAAATGGAAGCAGTATAA 60.392 40.000 0.00 0.00 0.00 0.98
2795 3818 6.607689 CGTGACAAAATGGAAGCAGTATAAA 58.392 36.000 0.00 0.00 0.00 1.40
2796 3819 7.081349 CGTGACAAAATGGAAGCAGTATAAAA 58.919 34.615 0.00 0.00 0.00 1.52
2797 3820 7.754924 CGTGACAAAATGGAAGCAGTATAAAAT 59.245 33.333 0.00 0.00 0.00 1.82
2806 3829 8.807948 TGGAAGCAGTATAAAATAAGAAAGCT 57.192 30.769 0.00 0.00 0.00 3.74
2807 3830 8.893727 TGGAAGCAGTATAAAATAAGAAAGCTC 58.106 33.333 0.00 0.00 0.00 4.09
2808 3831 8.064814 GGAAGCAGTATAAAATAAGAAAGCTCG 58.935 37.037 0.00 0.00 0.00 5.03
2809 3832 7.484035 AGCAGTATAAAATAAGAAAGCTCGG 57.516 36.000 0.00 0.00 0.00 4.63
2810 3833 7.272978 AGCAGTATAAAATAAGAAAGCTCGGA 58.727 34.615 0.00 0.00 0.00 4.55
2811 3834 7.439655 AGCAGTATAAAATAAGAAAGCTCGGAG 59.560 37.037 0.00 0.00 0.00 4.63
2812 3835 7.438459 GCAGTATAAAATAAGAAAGCTCGGAGA 59.562 37.037 9.69 0.00 0.00 3.71
2836 3859 5.684550 ACGGAGTTTCAGGATTGTAAAAC 57.315 39.130 0.00 0.00 37.78 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.482156 AGCTCTCACCGCAATTGATAT 57.518 42.857 10.34 0.00 0.00 1.63
54 55 3.982475 TCTATAGCTCTCACCGCAATTG 58.018 45.455 0.00 0.00 0.00 2.32
104 105 3.293311 ACAGTGCAAATGCTGTTCATC 57.707 42.857 6.97 0.00 42.61 2.92
112 113 7.636259 TTTTAATAGTGAACAGTGCAAATGC 57.364 32.000 0.00 0.00 33.50 3.56
115 116 7.708322 TGCATTTTTAATAGTGAACAGTGCAAA 59.292 29.630 0.00 0.00 35.12 3.68
116 117 7.168972 GTGCATTTTTAATAGTGAACAGTGCAA 59.831 33.333 0.00 0.00 39.10 4.08
126 127 7.378461 ACACAACTTCGTGCATTTTTAATAGTG 59.622 33.333 0.00 0.00 40.73 2.74
131 132 6.952935 AAACACAACTTCGTGCATTTTTAA 57.047 29.167 0.00 0.00 40.73 1.52
133 134 5.854431 AAAACACAACTTCGTGCATTTTT 57.146 30.435 0.00 0.00 40.73 1.94
134 135 5.178438 ACAAAAACACAACTTCGTGCATTTT 59.822 32.000 0.00 0.00 40.73 1.82
135 136 4.688413 ACAAAAACACAACTTCGTGCATTT 59.312 33.333 0.00 0.00 40.73 2.32
136 137 4.241681 ACAAAAACACAACTTCGTGCATT 58.758 34.783 0.00 0.00 40.73 3.56
137 138 3.843999 ACAAAAACACAACTTCGTGCAT 58.156 36.364 0.00 0.00 40.73 3.96
138 139 3.290308 ACAAAAACACAACTTCGTGCA 57.710 38.095 0.00 0.00 40.73 4.57
139 140 3.239712 GCTACAAAAACACAACTTCGTGC 59.760 43.478 0.00 0.00 40.73 5.34
140 141 4.658071 AGCTACAAAAACACAACTTCGTG 58.342 39.130 0.00 0.00 42.81 4.35
141 142 4.634443 AGAGCTACAAAAACACAACTTCGT 59.366 37.500 0.00 0.00 0.00 3.85
143 144 5.965918 GTCAGAGCTACAAAAACACAACTTC 59.034 40.000 0.00 0.00 0.00 3.01
145 146 4.335594 GGTCAGAGCTACAAAAACACAACT 59.664 41.667 0.00 0.00 0.00 3.16
146 147 4.095782 TGGTCAGAGCTACAAAAACACAAC 59.904 41.667 0.38 0.00 0.00 3.32
147 148 4.265893 TGGTCAGAGCTACAAAAACACAA 58.734 39.130 0.38 0.00 0.00 3.33
148 149 3.879998 TGGTCAGAGCTACAAAAACACA 58.120 40.909 0.38 0.00 0.00 3.72
151 152 5.182001 ACATCATGGTCAGAGCTACAAAAAC 59.818 40.000 0.38 0.00 0.00 2.43
152 153 5.316167 ACATCATGGTCAGAGCTACAAAAA 58.684 37.500 0.38 0.00 0.00 1.94
154 155 4.558226 ACATCATGGTCAGAGCTACAAA 57.442 40.909 0.38 0.00 0.00 2.83
155 156 4.711846 ACTACATCATGGTCAGAGCTACAA 59.288 41.667 0.38 0.00 0.00 2.41
156 157 4.281657 ACTACATCATGGTCAGAGCTACA 58.718 43.478 0.38 0.00 0.00 2.74
157 158 4.339530 TGACTACATCATGGTCAGAGCTAC 59.660 45.833 0.38 0.00 43.35 3.58
158 159 4.536765 TGACTACATCATGGTCAGAGCTA 58.463 43.478 0.38 0.00 43.35 3.32
159 160 3.369175 TGACTACATCATGGTCAGAGCT 58.631 45.455 0.38 0.00 43.35 4.09
160 161 3.808466 TGACTACATCATGGTCAGAGC 57.192 47.619 0.00 0.00 43.35 4.09
171 172 5.633601 TGTGAAGTTTGACGATGACTACATC 59.366 40.000 0.00 0.00 46.50 3.06
172 173 5.405571 GTGTGAAGTTTGACGATGACTACAT 59.594 40.000 0.00 0.00 39.67 2.29
174 175 4.743151 TGTGTGAAGTTTGACGATGACTAC 59.257 41.667 0.00 0.00 0.00 2.73
175 176 4.743151 GTGTGTGAAGTTTGACGATGACTA 59.257 41.667 0.00 0.00 0.00 2.59
177 178 3.308595 TGTGTGTGAAGTTTGACGATGAC 59.691 43.478 0.00 0.00 0.00 3.06
178 179 3.526534 TGTGTGTGAAGTTTGACGATGA 58.473 40.909 0.00 0.00 0.00 2.92
179 180 3.942539 TGTGTGTGAAGTTTGACGATG 57.057 42.857 0.00 0.00 0.00 3.84
180 181 3.876914 ACATGTGTGTGAAGTTTGACGAT 59.123 39.130 0.00 0.00 37.14 3.73
181 182 3.266636 ACATGTGTGTGAAGTTTGACGA 58.733 40.909 0.00 0.00 37.14 4.20
182 183 3.673746 ACATGTGTGTGAAGTTTGACG 57.326 42.857 0.00 0.00 37.14 4.35
183 184 7.515059 GCATTTTACATGTGTGTGAAGTTTGAC 60.515 37.037 9.11 0.00 39.39 3.18
185 186 6.255237 TGCATTTTACATGTGTGTGAAGTTTG 59.745 34.615 9.11 0.00 39.39 2.93
186 187 6.336566 TGCATTTTACATGTGTGTGAAGTTT 58.663 32.000 9.11 0.00 39.39 2.66
188 189 5.512753 TGCATTTTACATGTGTGTGAAGT 57.487 34.783 9.11 0.00 39.39 3.01
189 190 5.574055 GGATGCATTTTACATGTGTGTGAAG 59.426 40.000 9.11 0.00 39.39 3.02
190 191 5.010415 TGGATGCATTTTACATGTGTGTGAA 59.990 36.000 9.11 0.00 39.39 3.18
191 192 4.522022 TGGATGCATTTTACATGTGTGTGA 59.478 37.500 9.11 0.00 39.39 3.58
192 193 4.807443 TGGATGCATTTTACATGTGTGTG 58.193 39.130 9.11 3.43 39.39 3.82
193 194 5.664294 ATGGATGCATTTTACATGTGTGT 57.336 34.783 9.11 0.00 42.39 3.72
195 196 9.748708 GTTTATATGGATGCATTTTACATGTGT 57.251 29.630 9.11 0.00 0.00 3.72
196 197 9.970395 AGTTTATATGGATGCATTTTACATGTG 57.030 29.630 9.11 0.00 0.00 3.21
207 208 7.573710 AGGAAGTACAAGTTTATATGGATGCA 58.426 34.615 0.00 0.00 0.00 3.96
208 209 7.173390 GGAGGAAGTACAAGTTTATATGGATGC 59.827 40.741 0.00 0.00 0.00 3.91
209 210 7.385205 CGGAGGAAGTACAAGTTTATATGGATG 59.615 40.741 0.00 0.00 0.00 3.51
210 211 7.070821 ACGGAGGAAGTACAAGTTTATATGGAT 59.929 37.037 0.00 0.00 0.00 3.41
211 212 6.381994 ACGGAGGAAGTACAAGTTTATATGGA 59.618 38.462 0.00 0.00 0.00 3.41
212 213 6.579865 ACGGAGGAAGTACAAGTTTATATGG 58.420 40.000 0.00 0.00 0.00 2.74
213 214 9.590451 TTTACGGAGGAAGTACAAGTTTATATG 57.410 33.333 0.00 0.00 0.00 1.78
215 216 8.806146 AGTTTACGGAGGAAGTACAAGTTTATA 58.194 33.333 0.00 0.00 0.00 0.98
217 218 7.054491 AGTTTACGGAGGAAGTACAAGTTTA 57.946 36.000 0.00 0.00 0.00 2.01
218 219 5.922053 AGTTTACGGAGGAAGTACAAGTTT 58.078 37.500 0.00 0.00 0.00 2.66
280 281 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
282 283 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
294 295 9.010029 TGAAAAATTCATACTCCCTCTGTAAAC 57.990 33.333 0.00 0.00 34.08 2.01
295 296 9.231297 CTGAAAAATTCATACTCCCTCTGTAAA 57.769 33.333 0.00 0.00 39.30 2.01
296 297 7.829211 CCTGAAAAATTCATACTCCCTCTGTAA 59.171 37.037 0.00 0.00 39.30 2.41
299 300 6.418101 TCCTGAAAAATTCATACTCCCTCTG 58.582 40.000 0.00 0.00 39.30 3.35
301 302 7.888250 AATCCTGAAAAATTCATACTCCCTC 57.112 36.000 0.00 0.00 39.30 4.30
302 303 8.670521 AAAATCCTGAAAAATTCATACTCCCT 57.329 30.769 0.00 0.00 39.30 4.20
362 429 9.705290 AAAATTCATACAATTTACGGAGCTTTT 57.295 25.926 0.00 0.00 30.38 2.27
363 430 9.705290 AAAAATTCATACAATTTACGGAGCTTT 57.295 25.926 0.00 0.00 30.38 3.51
457 671 6.681777 CCTGTTGCCCAGCTATTATTATTTC 58.318 40.000 0.00 0.00 40.06 2.17
461 675 3.117701 TGCCTGTTGCCCAGCTATTATTA 60.118 43.478 0.00 0.00 40.06 0.98
464 681 0.623194 TGCCTGTTGCCCAGCTATTA 59.377 50.000 0.00 0.00 40.06 0.98
467 684 0.107214 GTATGCCTGTTGCCCAGCTA 60.107 55.000 0.00 0.00 40.06 3.32
483 700 1.762460 CGACCTCCCTGGGCTGTAT 60.762 63.158 8.22 0.00 43.44 2.29
496 713 3.474570 GCTGATGGGCCTCGACCT 61.475 66.667 4.53 0.00 0.00 3.85
505 722 0.250640 GCTACTCATGGGCTGATGGG 60.251 60.000 0.00 0.00 32.10 4.00
506 723 0.471191 TGCTACTCATGGGCTGATGG 59.529 55.000 0.00 0.00 32.10 3.51
507 724 1.590932 GTGCTACTCATGGGCTGATG 58.409 55.000 0.00 0.00 32.10 3.07
508 725 0.471617 GGTGCTACTCATGGGCTGAT 59.528 55.000 0.00 0.00 32.10 2.90
509 726 0.909133 TGGTGCTACTCATGGGCTGA 60.909 55.000 0.00 0.00 0.00 4.26
510 727 0.463295 CTGGTGCTACTCATGGGCTG 60.463 60.000 0.00 0.00 0.00 4.85
511 728 1.630126 CCTGGTGCTACTCATGGGCT 61.630 60.000 0.00 0.00 0.00 5.19
517 734 1.583495 CGTCGTCCTGGTGCTACTCA 61.583 60.000 0.00 0.00 0.00 3.41
542 759 3.113514 TTTCGCTGGTGTGGAGGCA 62.114 57.895 0.00 0.00 0.00 4.75
543 760 2.281484 TTTCGCTGGTGTGGAGGC 60.281 61.111 0.00 0.00 0.00 4.70
544 761 0.817634 TTGTTTCGCTGGTGTGGAGG 60.818 55.000 0.00 0.00 0.00 4.30
545 762 1.197721 GATTGTTTCGCTGGTGTGGAG 59.802 52.381 0.00 0.00 0.00 3.86
546 763 1.234821 GATTGTTTCGCTGGTGTGGA 58.765 50.000 0.00 0.00 0.00 4.02
547 764 0.240945 GGATTGTTTCGCTGGTGTGG 59.759 55.000 0.00 0.00 0.00 4.17
548 765 0.240945 GGGATTGTTTCGCTGGTGTG 59.759 55.000 0.00 0.00 34.56 3.82
555 772 2.202479 GCGCAGGGATTGTTTCGC 60.202 61.111 0.30 0.00 37.56 4.70
560 777 2.045926 GAGTGGCGCAGGGATTGT 60.046 61.111 10.83 0.00 0.00 2.71
566 783 1.395045 TAGAGGATGAGTGGCGCAGG 61.395 60.000 10.83 0.00 0.00 4.85
605 828 2.128507 GGAGTAGGACTGGGAGCCG 61.129 68.421 0.00 0.00 0.00 5.52
615 838 2.225382 TGATCGTGTTGGGAGTAGGA 57.775 50.000 0.00 0.00 0.00 2.94
616 839 3.458189 GATTGATCGTGTTGGGAGTAGG 58.542 50.000 0.00 0.00 0.00 3.18
617 840 3.116300 CGATTGATCGTGTTGGGAGTAG 58.884 50.000 5.26 0.00 44.74 2.57
618 841 3.159353 CGATTGATCGTGTTGGGAGTA 57.841 47.619 5.26 0.00 44.74 2.59
619 842 2.010145 CGATTGATCGTGTTGGGAGT 57.990 50.000 5.26 0.00 44.74 3.85
647 876 1.934956 CGGAAGACATCGCGACTCG 60.935 63.158 12.93 5.58 40.15 4.18
712 941 2.473984 GTCGTCGAACACAAGGTAAAGG 59.526 50.000 0.00 0.00 0.00 3.11
715 944 2.544277 CCAGTCGTCGAACACAAGGTAA 60.544 50.000 0.00 0.00 0.00 2.85
724 953 2.126580 CGGGACCAGTCGTCGAAC 60.127 66.667 0.00 0.00 42.99 3.95
774 1003 2.279120 GATGACGGCCAGAGCTCG 60.279 66.667 8.37 3.24 39.73 5.03
780 1009 3.200593 GCTGCTGATGACGGCCAG 61.201 66.667 2.24 0.00 46.76 4.85
823 1052 4.821589 GCTTCGGACCTGGCCTCG 62.822 72.222 3.32 0.25 0.00 4.63
824 1053 4.475135 GGCTTCGGACCTGGCCTC 62.475 72.222 3.32 0.00 41.20 4.70
917 1160 3.797353 GCCAAGATCCGGGAGCCA 61.797 66.667 9.01 0.00 0.00 4.75
923 1166 1.572085 GATGCATCGCCAAGATCCGG 61.572 60.000 11.68 0.00 37.52 5.14
924 1167 1.572085 GGATGCATCGCCAAGATCCG 61.572 60.000 20.15 0.00 37.52 4.18
1047 1290 2.751436 CATGGGTGGTCGCCTTGG 60.751 66.667 0.31 0.00 0.00 3.61
1113 1356 4.379243 AAGGACGCCGTGCTCAGG 62.379 66.667 12.78 0.00 31.83 3.86
1116 1359 4.415332 TCGAAGGACGCCGTGCTC 62.415 66.667 12.78 4.98 42.26 4.26
1142 1385 3.054802 GGGGTAGATGATATGCTCCAAGG 60.055 52.174 0.00 0.00 0.00 3.61
1144 1387 2.912956 GGGGGTAGATGATATGCTCCAA 59.087 50.000 0.00 0.00 0.00 3.53
1164 1407 1.656441 GCTGCAATATGAAGCCGGG 59.344 57.895 2.18 0.00 43.36 5.73
1173 1803 3.005554 GCTACGATCCATGCTGCAATAT 58.994 45.455 6.36 0.00 0.00 1.28
1200 1830 3.655810 GAGCTGCTCCCACGACCAG 62.656 68.421 18.80 0.00 0.00 4.00
1220 1850 0.457443 GACCTTAAATGGCTGCCTGC 59.543 55.000 21.03 0.00 41.94 4.85
1335 1971 1.084289 GTTTCCACGATAGCGCCTTT 58.916 50.000 2.29 0.00 42.48 3.11
1512 2151 3.059982 CAGACCCTTGACGCAGGA 58.940 61.111 0.00 0.00 35.71 3.86
1521 2160 1.353694 AGCTTCTCATTGCAGACCCTT 59.646 47.619 0.00 0.00 0.00 3.95
1638 2280 3.376935 AACGAGGGCCTGATCAGCG 62.377 63.158 12.95 16.36 0.00 5.18
1799 2474 0.537188 GGGATCTTCAGCGAGGAACA 59.463 55.000 0.00 0.00 0.00 3.18
1864 2539 8.410912 AGTGGAAAACAAAACATAAGTAGGAAC 58.589 33.333 0.00 0.00 0.00 3.62
1865 2540 8.528044 AGTGGAAAACAAAACATAAGTAGGAA 57.472 30.769 0.00 0.00 0.00 3.36
1866 2541 7.776030 TGAGTGGAAAACAAAACATAAGTAGGA 59.224 33.333 0.00 0.00 0.00 2.94
1867 2542 7.936584 TGAGTGGAAAACAAAACATAAGTAGG 58.063 34.615 0.00 0.00 0.00 3.18
1868 2543 8.621286 ACTGAGTGGAAAACAAAACATAAGTAG 58.379 33.333 0.00 0.00 0.00 2.57
1870 2545 7.404671 ACTGAGTGGAAAACAAAACATAAGT 57.595 32.000 0.00 0.00 0.00 2.24
1880 2555 8.154203 TGAGTCATAATAACTGAGTGGAAAACA 58.846 33.333 0.00 0.00 0.00 2.83
1886 2561 7.706281 GACATGAGTCATAATAACTGAGTGG 57.294 40.000 5.03 0.00 44.34 4.00
2044 2723 8.319143 ACTATATTGTTGTTCTGTTGGTACAC 57.681 34.615 0.00 0.00 39.29 2.90
2063 2742 9.322769 CCCATCCCAGTAAAAGTAGTACTATAT 57.677 37.037 5.75 0.00 30.54 0.86
2064 2743 8.291745 ACCCATCCCAGTAAAAGTAGTACTATA 58.708 37.037 5.75 0.00 30.54 1.31
2065 2744 7.070821 CACCCATCCCAGTAAAAGTAGTACTAT 59.929 40.741 5.75 0.00 30.54 2.12
2066 2745 6.381994 CACCCATCCCAGTAAAAGTAGTACTA 59.618 42.308 2.50 0.00 30.54 1.82
2067 2746 5.189145 CACCCATCCCAGTAAAAGTAGTACT 59.811 44.000 0.00 0.00 31.85 2.73
2068 2747 5.046087 ACACCCATCCCAGTAAAAGTAGTAC 60.046 44.000 0.00 0.00 0.00 2.73
2069 2748 5.095809 ACACCCATCCCAGTAAAAGTAGTA 58.904 41.667 0.00 0.00 0.00 1.82
2070 2749 3.914435 ACACCCATCCCAGTAAAAGTAGT 59.086 43.478 0.00 0.00 0.00 2.73
2071 2750 4.569719 ACACCCATCCCAGTAAAAGTAG 57.430 45.455 0.00 0.00 0.00 2.57
2072 2751 4.351407 TGAACACCCATCCCAGTAAAAGTA 59.649 41.667 0.00 0.00 0.00 2.24
2073 2752 3.139397 TGAACACCCATCCCAGTAAAAGT 59.861 43.478 0.00 0.00 0.00 2.66
2074 2753 3.761897 TGAACACCCATCCCAGTAAAAG 58.238 45.455 0.00 0.00 0.00 2.27
2075 2754 3.885976 TGAACACCCATCCCAGTAAAA 57.114 42.857 0.00 0.00 0.00 1.52
2076 2755 3.963129 GATGAACACCCATCCCAGTAAA 58.037 45.455 0.00 0.00 37.54 2.01
2077 2756 3.644966 GATGAACACCCATCCCAGTAA 57.355 47.619 0.00 0.00 37.54 2.24
2084 2763 2.359900 GTCAGTGGATGAACACCCATC 58.640 52.381 0.00 0.00 42.28 3.51
2085 2764 1.004745 GGTCAGTGGATGAACACCCAT 59.995 52.381 0.00 0.00 45.69 4.00
2086 2765 0.400213 GGTCAGTGGATGAACACCCA 59.600 55.000 0.00 0.00 45.69 4.51
2087 2766 3.249687 GGTCAGTGGATGAACACCC 57.750 57.895 0.00 0.00 45.69 4.61
2108 2787 9.465985 GATTAATACAAGTGTTTTCCCGAAAAA 57.534 29.630 4.25 0.00 41.37 1.94
2109 2788 8.630917 TGATTAATACAAGTGTTTTCCCGAAAA 58.369 29.630 0.00 0.00 37.90 2.29
2110 2789 8.167605 TGATTAATACAAGTGTTTTCCCGAAA 57.832 30.769 0.00 0.00 0.00 3.46
2111 2790 7.747155 TGATTAATACAAGTGTTTTCCCGAA 57.253 32.000 0.00 0.00 0.00 4.30
2112 2791 7.662258 TCTTGATTAATACAAGTGTTTTCCCGA 59.338 33.333 18.74 3.27 43.30 5.14
2113 2792 7.812648 TCTTGATTAATACAAGTGTTTTCCCG 58.187 34.615 18.74 0.00 43.30 5.14
2114 2793 8.244113 CCTCTTGATTAATACAAGTGTTTTCCC 58.756 37.037 18.74 0.00 43.30 3.97
2115 2794 8.793592 ACCTCTTGATTAATACAAGTGTTTTCC 58.206 33.333 18.74 0.00 43.30 3.13
2118 2797 9.449719 CCTACCTCTTGATTAATACAAGTGTTT 57.550 33.333 18.74 12.11 43.30 2.83
2119 2798 8.822805 TCCTACCTCTTGATTAATACAAGTGTT 58.177 33.333 18.74 12.20 43.30 3.32
2120 2799 8.375493 TCCTACCTCTTGATTAATACAAGTGT 57.625 34.615 18.74 18.18 43.30 3.55
2121 2800 9.838339 AATCCTACCTCTTGATTAATACAAGTG 57.162 33.333 18.74 17.01 43.30 3.16
2130 2809 9.213777 ACTGATTGTAATCCTACCTCTTGATTA 57.786 33.333 2.41 0.00 34.50 1.75
2131 2810 8.095452 ACTGATTGTAATCCTACCTCTTGATT 57.905 34.615 2.41 0.00 34.50 2.57
2132 2811 7.682787 ACTGATTGTAATCCTACCTCTTGAT 57.317 36.000 2.41 0.00 34.50 2.57
2133 2812 7.496346 AACTGATTGTAATCCTACCTCTTGA 57.504 36.000 2.41 0.00 34.50 3.02
2134 2813 7.824289 TGAAACTGATTGTAATCCTACCTCTTG 59.176 37.037 2.41 0.00 34.50 3.02
2135 2814 7.824779 GTGAAACTGATTGTAATCCTACCTCTT 59.175 37.037 2.41 0.00 34.50 2.85
2139 2818 7.681939 TTGTGAAACTGATTGTAATCCTACC 57.318 36.000 2.41 0.00 38.04 3.18
2142 2821 7.721399 AGACTTTGTGAAACTGATTGTAATCCT 59.279 33.333 2.41 0.00 38.04 3.24
2148 2827 8.345565 GTCATTAGACTTTGTGAAACTGATTGT 58.654 33.333 0.00 0.00 41.64 2.71
2150 2829 7.721399 AGGTCATTAGACTTTGTGAAACTGATT 59.279 33.333 0.00 0.00 44.36 2.57
2160 2839 5.799213 CCTTCTGAGGTCATTAGACTTTGT 58.201 41.667 0.00 0.00 44.36 2.83
2176 2855 2.672098 GCTAGGATCAGGACCTTCTGA 58.328 52.381 0.00 0.00 46.32 3.27
2200 2879 3.416156 AGGAAAGTTGAATCTGTCTGCC 58.584 45.455 0.00 0.00 0.00 4.85
2201 2880 4.320788 CCAAGGAAAGTTGAATCTGTCTGC 60.321 45.833 0.00 0.00 0.00 4.26
2202 2881 4.823989 ACCAAGGAAAGTTGAATCTGTCTG 59.176 41.667 0.00 0.00 0.00 3.51
2203 2882 5.053978 ACCAAGGAAAGTTGAATCTGTCT 57.946 39.130 0.00 0.00 0.00 3.41
2204 2883 5.532779 AGAACCAAGGAAAGTTGAATCTGTC 59.467 40.000 0.00 0.00 0.00 3.51
2282 2962 1.406539 ACCTTCTTTGCAGCTGTTGTG 59.593 47.619 16.64 4.17 0.00 3.33
2283 2963 1.767759 ACCTTCTTTGCAGCTGTTGT 58.232 45.000 16.64 0.00 0.00 3.32
2289 2969 2.163211 GAGATCCAACCTTCTTTGCAGC 59.837 50.000 0.00 0.00 0.00 5.25
2290 2970 3.683802 AGAGATCCAACCTTCTTTGCAG 58.316 45.455 0.00 0.00 0.00 4.41
2292 2972 2.675348 CGAGAGATCCAACCTTCTTTGC 59.325 50.000 0.00 0.00 0.00 3.68
2296 2976 2.534042 TCCGAGAGATCCAACCTTCT 57.466 50.000 0.00 0.00 0.00 2.85
2298 2978 2.171448 CCAATCCGAGAGATCCAACCTT 59.829 50.000 0.00 0.00 32.47 3.50
2299 2979 1.765314 CCAATCCGAGAGATCCAACCT 59.235 52.381 0.00 0.00 32.47 3.50
2322 3002 2.227036 AACCTGAGCTCTGTGGGGG 61.227 63.158 16.19 9.55 0.00 5.40
2350 3030 2.260869 TTCTTGTGCAGCGCCTTCC 61.261 57.895 2.29 0.00 0.00 3.46
2354 3034 0.166814 CTTAGTTCTTGTGCAGCGCC 59.833 55.000 2.29 0.00 0.00 6.53
2355 3035 0.868406 ACTTAGTTCTTGTGCAGCGC 59.132 50.000 0.00 0.00 0.00 5.92
2356 3036 3.609103 AAACTTAGTTCTTGTGCAGCG 57.391 42.857 0.00 0.00 0.00 5.18
2357 3037 3.968724 CGAAAACTTAGTTCTTGTGCAGC 59.031 43.478 0.00 0.00 0.00 5.25
2358 3038 5.403897 TCGAAAACTTAGTTCTTGTGCAG 57.596 39.130 0.00 0.00 0.00 4.41
2359 3039 5.295787 ACATCGAAAACTTAGTTCTTGTGCA 59.704 36.000 0.00 0.00 0.00 4.57
2366 3052 4.742438 TGGCACATCGAAAACTTAGTTC 57.258 40.909 0.00 0.00 0.00 3.01
2390 3076 1.284657 CAGAGCTGGTTCATGCGTAG 58.715 55.000 0.00 0.00 0.00 3.51
2391 3077 0.608130 ACAGAGCTGGTTCATGCGTA 59.392 50.000 0.00 0.00 34.19 4.42
2392 3078 0.952497 CACAGAGCTGGTTCATGCGT 60.952 55.000 0.00 0.00 34.19 5.24
2393 3079 1.642037 CCACAGAGCTGGTTCATGCG 61.642 60.000 0.00 0.00 34.19 4.73
2394 3080 1.930908 GCCACAGAGCTGGTTCATGC 61.931 60.000 0.00 0.00 33.30 4.06
2395 3081 1.310933 GGCCACAGAGCTGGTTCATG 61.311 60.000 0.00 0.00 33.30 3.07
2396 3082 1.001641 GGCCACAGAGCTGGTTCAT 60.002 57.895 0.00 0.00 33.30 2.57
2397 3083 2.431683 GGCCACAGAGCTGGTTCA 59.568 61.111 0.00 0.00 33.30 3.18
2398 3084 2.431683 TGGCCACAGAGCTGGTTC 59.568 61.111 0.00 0.00 33.30 3.62
2403 3089 8.533142 GTAACTAATTACCTGGCCACAGAGCT 62.533 46.154 0.00 0.00 44.60 4.09
2404 3090 6.425776 GTAACTAATTACCTGGCCACAGAGC 61.426 48.000 0.00 0.00 44.60 4.09
2405 3091 5.116882 GTAACTAATTACCTGGCCACAGAG 58.883 45.833 0.00 0.00 44.60 3.35
2406 3092 4.532916 TGTAACTAATTACCTGGCCACAGA 59.467 41.667 0.00 0.00 44.60 3.41
2407 3093 4.839121 TGTAACTAATTACCTGGCCACAG 58.161 43.478 0.00 0.00 44.51 3.66
2408 3094 4.912317 TGTAACTAATTACCTGGCCACA 57.088 40.909 0.00 0.00 40.12 4.17
2409 3095 5.650703 ACATTGTAACTAATTACCTGGCCAC 59.349 40.000 0.00 0.00 40.12 5.01
2410 3096 5.822204 ACATTGTAACTAATTACCTGGCCA 58.178 37.500 4.71 4.71 40.12 5.36
2411 3097 7.868906 TTACATTGTAACTAATTACCTGGCC 57.131 36.000 5.14 0.00 40.12 5.36
2412 3098 8.186163 GGTTTACATTGTAACTAATTACCTGGC 58.814 37.037 8.75 0.00 40.12 4.85
2413 3099 9.457436 AGGTTTACATTGTAACTAATTACCTGG 57.543 33.333 20.09 0.00 40.12 4.45
2421 3107 9.616156 TCTTGTTCAGGTTTACATTGTAACTAA 57.384 29.630 8.75 0.00 0.00 2.24
2422 3108 9.268268 CTCTTGTTCAGGTTTACATTGTAACTA 57.732 33.333 8.75 0.00 0.00 2.24
2423 3109 7.773690 ACTCTTGTTCAGGTTTACATTGTAACT 59.226 33.333 8.75 1.78 0.00 2.24
2424 3110 7.927048 ACTCTTGTTCAGGTTTACATTGTAAC 58.073 34.615 8.75 5.02 0.00 2.50
2425 3111 8.514330 AACTCTTGTTCAGGTTTACATTGTAA 57.486 30.769 5.14 5.14 0.00 2.41
2426 3112 8.514330 AAACTCTTGTTCAGGTTTACATTGTA 57.486 30.769 0.00 0.00 34.96 2.41
2427 3113 7.404671 AAACTCTTGTTCAGGTTTACATTGT 57.595 32.000 0.00 0.00 34.96 2.71
2428 3114 9.450807 CTTAAACTCTTGTTCAGGTTTACATTG 57.549 33.333 0.00 0.00 35.01 2.82
2429 3115 8.630037 CCTTAAACTCTTGTTCAGGTTTACATT 58.370 33.333 0.00 0.00 35.01 2.71
2459 3145 6.036300 CGCACGACCTTTATTTTCTTACCATA 59.964 38.462 0.00 0.00 0.00 2.74
2462 3148 4.152938 ACGCACGACCTTTATTTTCTTACC 59.847 41.667 0.00 0.00 0.00 2.85
2463 3149 5.273523 ACGCACGACCTTTATTTTCTTAC 57.726 39.130 0.00 0.00 0.00 2.34
2464 3150 7.758980 TGTATACGCACGACCTTTATTTTCTTA 59.241 33.333 0.00 0.00 0.00 2.10
2465 3151 6.591062 TGTATACGCACGACCTTTATTTTCTT 59.409 34.615 0.00 0.00 0.00 2.52
2466 3152 6.101332 TGTATACGCACGACCTTTATTTTCT 58.899 36.000 0.00 0.00 0.00 2.52
2467 3153 6.335176 TGTATACGCACGACCTTTATTTTC 57.665 37.500 0.00 0.00 0.00 2.29
2468 3154 6.724694 TTGTATACGCACGACCTTTATTTT 57.275 33.333 0.00 0.00 0.00 1.82
2469 3155 6.724694 TTTGTATACGCACGACCTTTATTT 57.275 33.333 0.00 0.00 0.00 1.40
2473 3176 5.410439 AGAAATTTGTATACGCACGACCTTT 59.590 36.000 0.00 0.00 0.00 3.11
2479 3182 5.613812 TCAACAGAAATTTGTATACGCACG 58.386 37.500 0.00 0.00 0.00 5.34
2483 3186 7.305474 AGCCTTTCAACAGAAATTTGTATACG 58.695 34.615 0.00 0.00 31.37 3.06
2487 3190 6.279882 CCAAGCCTTTCAACAGAAATTTGTA 58.720 36.000 0.00 0.00 31.37 2.41
2491 3194 3.134442 TGCCAAGCCTTTCAACAGAAATT 59.866 39.130 0.00 0.00 31.37 1.82
2501 3204 2.692041 AGAAGCATATGCCAAGCCTTTC 59.308 45.455 23.96 17.65 43.38 2.62
2505 3208 1.607628 CTGAGAAGCATATGCCAAGCC 59.392 52.381 23.96 10.36 43.38 4.35
2551 3254 8.378172 ACGAATTATCACGATCCACAAATTAT 57.622 30.769 0.00 0.00 0.00 1.28
2554 3257 7.780008 TTACGAATTATCACGATCCACAAAT 57.220 32.000 0.00 0.00 0.00 2.32
2555 3258 7.279090 ACATTACGAATTATCACGATCCACAAA 59.721 33.333 0.00 0.00 0.00 2.83
2556 3259 6.759356 ACATTACGAATTATCACGATCCACAA 59.241 34.615 0.00 0.00 0.00 3.33
2560 3263 6.089551 CAGGACATTACGAATTATCACGATCC 59.910 42.308 0.00 0.00 0.00 3.36
2561 3264 6.641314 ACAGGACATTACGAATTATCACGATC 59.359 38.462 0.00 0.00 0.00 3.69
2562 3265 6.420903 CACAGGACATTACGAATTATCACGAT 59.579 38.462 0.00 0.00 0.00 3.73
2563 3266 5.746721 CACAGGACATTACGAATTATCACGA 59.253 40.000 0.00 0.00 0.00 4.35
2564 3267 5.518847 ACACAGGACATTACGAATTATCACG 59.481 40.000 0.00 0.00 0.00 4.35
2565 3268 6.312918 ACACACAGGACATTACGAATTATCAC 59.687 38.462 0.00 0.00 0.00 3.06
2567 3270 6.903883 ACACACAGGACATTACGAATTATC 57.096 37.500 0.00 0.00 0.00 1.75
2569 3272 5.106869 GCAACACACAGGACATTACGAATTA 60.107 40.000 0.00 0.00 0.00 1.40
2570 3273 4.320202 GCAACACACAGGACATTACGAATT 60.320 41.667 0.00 0.00 0.00 2.17
2571 3274 3.188460 GCAACACACAGGACATTACGAAT 59.812 43.478 0.00 0.00 0.00 3.34
2572 3275 2.546368 GCAACACACAGGACATTACGAA 59.454 45.455 0.00 0.00 0.00 3.85
2573 3276 2.139917 GCAACACACAGGACATTACGA 58.860 47.619 0.00 0.00 0.00 3.43
2575 3278 2.226330 TGGCAACACACAGGACATTAC 58.774 47.619 0.00 0.00 46.17 1.89
2576 3279 2.647683 TGGCAACACACAGGACATTA 57.352 45.000 0.00 0.00 46.17 1.90
2610 3632 7.384439 TGTTTTGTTAGTGTCTTCATGTCAA 57.616 32.000 0.00 0.00 0.00 3.18
2624 3646 9.891828 TTACAGTGATGCTTAATGTTTTGTTAG 57.108 29.630 0.00 0.00 0.00 2.34
2639 3661 6.106877 ACACATTACGAATTACAGTGATGC 57.893 37.500 0.00 0.00 37.72 3.91
2645 3667 4.833469 TGCGACACATTACGAATTACAG 57.167 40.909 0.00 0.00 0.00 2.74
2654 3676 3.621268 TCATAAGCCTTGCGACACATTAC 59.379 43.478 0.00 0.00 0.00 1.89
2664 3686 2.224314 GCTATTCCGTCATAAGCCTTGC 59.776 50.000 0.00 0.00 0.00 4.01
2667 3689 1.961394 TCGCTATTCCGTCATAAGCCT 59.039 47.619 0.00 0.00 0.00 4.58
2674 3696 5.113383 ACAATATTTGTCGCTATTCCGTCA 58.887 37.500 0.00 0.00 40.56 4.35
2707 3730 6.183360 CCAGTGTCTTACTATCACTACCAGTC 60.183 46.154 0.00 0.00 39.89 3.51
2712 3735 4.334759 TCGCCAGTGTCTTACTATCACTAC 59.665 45.833 0.00 0.00 39.89 2.73
2713 3736 4.520179 TCGCCAGTGTCTTACTATCACTA 58.480 43.478 0.00 0.00 39.89 2.74
2714 3737 3.353557 TCGCCAGTGTCTTACTATCACT 58.646 45.455 0.00 0.00 42.14 3.41
2715 3738 3.777465 TCGCCAGTGTCTTACTATCAC 57.223 47.619 0.00 0.00 37.60 3.06
2716 3739 3.428999 GCTTCGCCAGTGTCTTACTATCA 60.429 47.826 0.00 0.00 37.60 2.15
2717 3740 3.117046 GCTTCGCCAGTGTCTTACTATC 58.883 50.000 0.00 0.00 37.60 2.08
2718 3741 2.761208 AGCTTCGCCAGTGTCTTACTAT 59.239 45.455 0.00 0.00 37.60 2.12
2719 3742 2.094700 CAGCTTCGCCAGTGTCTTACTA 60.095 50.000 0.00 0.00 37.60 1.82
2720 3743 0.969894 AGCTTCGCCAGTGTCTTACT 59.030 50.000 0.00 0.00 41.36 2.24
2721 3744 1.071605 CAGCTTCGCCAGTGTCTTAC 58.928 55.000 0.00 0.00 0.00 2.34
2722 3745 0.966179 TCAGCTTCGCCAGTGTCTTA 59.034 50.000 0.00 0.00 0.00 2.10
2723 3746 0.106708 TTCAGCTTCGCCAGTGTCTT 59.893 50.000 0.00 0.00 0.00 3.01
2724 3747 0.322975 ATTCAGCTTCGCCAGTGTCT 59.677 50.000 0.00 0.00 0.00 3.41
2725 3748 1.135859 CAATTCAGCTTCGCCAGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
2726 3749 0.877071 CAATTCAGCTTCGCCAGTGT 59.123 50.000 0.00 0.00 0.00 3.55
2727 3750 0.169672 CCAATTCAGCTTCGCCAGTG 59.830 55.000 0.00 0.00 0.00 3.66
2728 3751 0.962356 CCCAATTCAGCTTCGCCAGT 60.962 55.000 0.00 0.00 0.00 4.00
2729 3752 0.677731 TCCCAATTCAGCTTCGCCAG 60.678 55.000 0.00 0.00 0.00 4.85
2734 3757 4.037923 TGTTGAGTTTCCCAATTCAGCTTC 59.962 41.667 0.00 0.00 32.90 3.86
2790 3813 7.861372 CGTCTCTCCGAGCTTTCTTATTTTATA 59.139 37.037 0.00 0.00 0.00 0.98
2791 3814 6.697892 CGTCTCTCCGAGCTTTCTTATTTTAT 59.302 38.462 0.00 0.00 0.00 1.40
2792 3815 6.034591 CGTCTCTCCGAGCTTTCTTATTTTA 58.965 40.000 0.00 0.00 0.00 1.52
2793 3816 4.865365 CGTCTCTCCGAGCTTTCTTATTTT 59.135 41.667 0.00 0.00 0.00 1.82
2794 3817 4.425520 CGTCTCTCCGAGCTTTCTTATTT 58.574 43.478 0.00 0.00 0.00 1.40
2795 3818 3.181485 CCGTCTCTCCGAGCTTTCTTATT 60.181 47.826 0.00 0.00 0.00 1.40
2796 3819 2.359531 CCGTCTCTCCGAGCTTTCTTAT 59.640 50.000 0.00 0.00 0.00 1.73
2797 3820 1.743958 CCGTCTCTCCGAGCTTTCTTA 59.256 52.381 0.00 0.00 0.00 2.10
2798 3821 0.528470 CCGTCTCTCCGAGCTTTCTT 59.472 55.000 0.00 0.00 0.00 2.52
2799 3822 0.322636 TCCGTCTCTCCGAGCTTTCT 60.323 55.000 0.00 0.00 0.00 2.52
2800 3823 0.099791 CTCCGTCTCTCCGAGCTTTC 59.900 60.000 0.00 0.00 0.00 2.62
2801 3824 0.609681 ACTCCGTCTCTCCGAGCTTT 60.610 55.000 0.00 0.00 0.00 3.51
2802 3825 0.609681 AACTCCGTCTCTCCGAGCTT 60.610 55.000 0.00 0.00 0.00 3.74
2803 3826 0.609681 AAACTCCGTCTCTCCGAGCT 60.610 55.000 0.00 0.00 0.00 4.09
2804 3827 0.179158 GAAACTCCGTCTCTCCGAGC 60.179 60.000 0.00 0.00 0.00 5.03
2805 3828 1.131504 CTGAAACTCCGTCTCTCCGAG 59.868 57.143 0.00 0.00 0.00 4.63
2806 3829 1.166129 CTGAAACTCCGTCTCTCCGA 58.834 55.000 0.00 0.00 0.00 4.55
2807 3830 0.171455 CCTGAAACTCCGTCTCTCCG 59.829 60.000 0.00 0.00 0.00 4.63
2808 3831 1.546961 TCCTGAAACTCCGTCTCTCC 58.453 55.000 0.00 0.00 0.00 3.71
2809 3832 3.056465 ACAATCCTGAAACTCCGTCTCTC 60.056 47.826 0.00 0.00 0.00 3.20
2810 3833 2.900546 ACAATCCTGAAACTCCGTCTCT 59.099 45.455 0.00 0.00 0.00 3.10
2811 3834 3.320673 ACAATCCTGAAACTCCGTCTC 57.679 47.619 0.00 0.00 0.00 3.36
2812 3835 4.884668 TTACAATCCTGAAACTCCGTCT 57.115 40.909 0.00 0.00 0.00 4.18
2813 3836 5.686834 GTTTTACAATCCTGAAACTCCGTC 58.313 41.667 0.00 0.00 0.00 4.79
2814 3837 5.684550 GTTTTACAATCCTGAAACTCCGT 57.315 39.130 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.