Multiple sequence alignment - TraesCS2A01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G072700 chr2A 100.000 7723 0 0 1 7723 32273524 32265802 0.000000e+00 14262.0
1 TraesCS2A01G072700 chr2A 85.990 621 64 13 7122 7723 32230613 32231229 1.820000e-180 643.0
2 TraesCS2A01G072700 chr2A 85.667 300 33 8 299 597 662258085 662258375 2.710000e-79 307.0
3 TraesCS2A01G072700 chr2A 81.017 295 52 4 3780 4074 739856553 739856263 1.680000e-56 231.0
4 TraesCS2A01G072700 chr2A 83.051 236 36 3 70 303 452786151 452786384 2.180000e-50 211.0
5 TraesCS2A01G072700 chr2A 96.875 64 2 0 1 64 562065132 562065069 2.950000e-19 108.0
6 TraesCS2A01G072700 chr2A 93.333 45 3 0 3574 3618 739856802 739856758 5.000000e-07 67.6
7 TraesCS2A01G072700 chr2D 94.402 4698 206 26 952 5609 30341769 30337089 0.000000e+00 7166.0
8 TraesCS2A01G072700 chr2D 92.811 2170 87 21 5612 7721 30337116 30334956 0.000000e+00 3079.0
9 TraesCS2A01G072700 chr2D 91.620 179 7 1 674 844 30342268 30342090 2.780000e-59 241.0
10 TraesCS2A01G072700 chr2B 92.690 4925 232 50 778 5606 48796804 48801696 0.000000e+00 6983.0
11 TraesCS2A01G072700 chr2B 90.733 1241 63 15 5611 6810 48801671 48802900 0.000000e+00 1607.0
12 TraesCS2A01G072700 chr2B 91.263 950 49 15 6804 7721 48803022 48803969 0.000000e+00 1264.0
13 TraesCS2A01G072700 chr2B 86.016 615 67 11 7120 7723 48817219 48816613 6.530000e-180 641.0
14 TraesCS2A01G072700 chr3D 86.207 609 70 9 7125 7723 35044952 35044348 0.000000e+00 647.0
15 TraesCS2A01G072700 chr3D 85.000 300 34 7 299 597 125675476 125675187 2.110000e-75 294.0
16 TraesCS2A01G072700 chr3B 86.207 609 70 9 7125 7723 58008102 58007498 0.000000e+00 647.0
17 TraesCS2A01G072700 chr3B 84.932 292 34 6 307 597 111676526 111676808 3.530000e-73 287.0
18 TraesCS2A01G072700 chr3B 84.615 221 30 3 85 303 111676244 111676462 4.690000e-52 217.0
19 TraesCS2A01G072700 chr1B 86.711 301 30 7 299 597 52701420 52701712 7.470000e-85 326.0
20 TraesCS2A01G072700 chr1B 86.752 234 30 1 70 303 52701132 52701364 7.690000e-65 259.0
21 TraesCS2A01G072700 chr1B 85.897 234 31 2 70 303 155736970 155736739 1.660000e-61 248.0
22 TraesCS2A01G072700 chr1B 84.255 235 34 2 70 303 143061638 143061406 7.800000e-55 226.0
23 TraesCS2A01G072700 chr1B 76.842 190 35 8 3238 3421 554223812 554223626 1.770000e-16 99.0
24 TraesCS2A01G072700 chr7B 86.711 301 26 10 299 597 432494512 432494224 9.670000e-84 322.0
25 TraesCS2A01G072700 chr7B 84.818 303 31 11 299 597 449033297 449033006 2.730000e-74 291.0
26 TraesCS2A01G072700 chr1A 85.430 302 30 10 299 597 135817782 135817492 1.260000e-77 302.0
27 TraesCS2A01G072700 chr1A 82.627 236 37 3 70 303 219298208 219298441 1.020000e-48 206.0
28 TraesCS2A01G072700 chr5A 86.496 274 29 4 299 571 602792823 602792557 2.110000e-75 294.0
29 TraesCS2A01G072700 chr6A 84.797 296 37 5 299 593 400388745 400388457 2.730000e-74 291.0
30 TraesCS2A01G072700 chr6A 88.889 45 5 0 3571 3615 59552637 59552681 1.000000e-03 56.5
31 TraesCS2A01G072700 chr3A 80.423 378 59 11 3702 4076 702597277 702596912 2.750000e-69 274.0
32 TraesCS2A01G072700 chr3A 84.066 182 22 5 2553 2731 712624024 712624201 1.330000e-37 169.0
33 TraesCS2A01G072700 chr7D 84.255 235 33 4 70 303 49606098 49606329 7.800000e-55 226.0
34 TraesCS2A01G072700 chr7D 93.750 64 4 0 1 64 306290280 306290217 6.380000e-16 97.1
35 TraesCS2A01G072700 chr5D 82.979 235 38 2 70 303 204511549 204511316 2.180000e-50 211.0
36 TraesCS2A01G072700 chr4A 83.122 237 33 5 70 303 81358 81590 7.850000e-50 209.0
37 TraesCS2A01G072700 chr7A 85.165 182 20 5 2553 2731 134552424 134552601 6.160000e-41 180.0
38 TraesCS2A01G072700 chr6B 76.842 190 35 8 3238 3421 373890708 373890522 1.770000e-16 99.0
39 TraesCS2A01G072700 chr6D 88.462 52 6 0 3370 3421 121229133 121229082 6.470000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G072700 chr2A 32265802 32273524 7722 True 14262.000000 14262 100.000000 1 7723 1 chr2A.!!$R1 7722
1 TraesCS2A01G072700 chr2A 32230613 32231229 616 False 643.000000 643 85.990000 7122 7723 1 chr2A.!!$F1 601
2 TraesCS2A01G072700 chr2D 30334956 30342268 7312 True 3495.333333 7166 92.944333 674 7721 3 chr2D.!!$R1 7047
3 TraesCS2A01G072700 chr2B 48796804 48803969 7165 False 3284.666667 6983 91.562000 778 7721 3 chr2B.!!$F1 6943
4 TraesCS2A01G072700 chr2B 48816613 48817219 606 True 641.000000 641 86.016000 7120 7723 1 chr2B.!!$R1 603
5 TraesCS2A01G072700 chr3D 35044348 35044952 604 True 647.000000 647 86.207000 7125 7723 1 chr3D.!!$R1 598
6 TraesCS2A01G072700 chr3B 58007498 58008102 604 True 647.000000 647 86.207000 7125 7723 1 chr3B.!!$R1 598
7 TraesCS2A01G072700 chr3B 111676244 111676808 564 False 252.000000 287 84.773500 85 597 2 chr3B.!!$F1 512
8 TraesCS2A01G072700 chr1B 52701132 52701712 580 False 292.500000 326 86.731500 70 597 2 chr1B.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 949 0.540133 TAAAACCCCGCCTGTTTCCC 60.540 55.000 0.00 0.0 34.97 3.97 F
879 959 1.342374 GCCTGTTTCCCCTCAATCCAT 60.342 52.381 0.00 0.0 0.00 3.41 F
2341 2693 0.111061 TTGCCTGCAAGTCTGACCAT 59.889 50.000 3.76 0.0 0.00 3.55 F
2850 3207 0.257039 AGGGTGATGCCAATGGAGAC 59.743 55.000 2.05 0.0 39.65 3.36 F
3427 3784 0.614134 ACACGAGGAGGGGTAAGTCC 60.614 60.000 0.00 0.0 0.00 3.85 F
3638 3997 1.871039 GCATGTTTGGTGACACTACGT 59.129 47.619 5.39 0.0 42.67 3.57 F
4934 5318 0.323451 AGCCGTTTTGATTCCCCTCC 60.323 55.000 0.00 0.0 0.00 4.30 F
5718 6104 0.326927 TTCCTTAAAGGGGCACGGAG 59.673 55.000 0.00 0.0 35.59 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2502 0.393077 AAGAGTTCACCAGTGGGACG 59.607 55.000 15.21 1.28 38.05 4.79 R
2527 2881 0.465460 TGAACACCACAAGACCAGCC 60.465 55.000 0.00 0.00 0.00 4.85 R
3401 3758 1.213013 CCCTCCTCGTGTCGTCTTG 59.787 63.158 0.00 0.00 0.00 3.02 R
4481 4863 1.751927 GCTGCCATCCTGTGAAGGG 60.752 63.158 0.00 0.00 29.82 3.95 R
4934 5318 1.093159 GAATCAGCTTCTGCCACCTG 58.907 55.000 0.00 0.00 40.80 4.00 R
5594 5978 1.133823 TGAGCCAACTTCAGCAAAGGA 60.134 47.619 4.18 0.00 39.47 3.36 R
6388 6803 0.037232 GGAGTGACACACAGGGTAGC 60.037 60.000 8.59 0.00 36.74 3.58 R
6865 7419 0.542702 ATTGGAAGGGGGCACAACAG 60.543 55.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.981460 AATCAAACTTTTTCTATATCTCCAGGT 57.019 29.630 0.00 0.00 0.00 4.00
59 60 9.620259 ATCAAACTTTTTCTATATCTCCAGGTC 57.380 33.333 0.00 0.00 0.00 3.85
60 61 8.602424 TCAAACTTTTTCTATATCTCCAGGTCA 58.398 33.333 0.00 0.00 0.00 4.02
61 62 9.401058 CAAACTTTTTCTATATCTCCAGGTCAT 57.599 33.333 0.00 0.00 0.00 3.06
62 63 9.981460 AAACTTTTTCTATATCTCCAGGTCATT 57.019 29.630 0.00 0.00 0.00 2.57
63 64 8.970859 ACTTTTTCTATATCTCCAGGTCATTG 57.029 34.615 0.00 0.00 0.00 2.82
64 65 8.772250 ACTTTTTCTATATCTCCAGGTCATTGA 58.228 33.333 0.00 0.00 0.00 2.57
65 66 9.790344 CTTTTTCTATATCTCCAGGTCATTGAT 57.210 33.333 0.00 0.00 0.00 2.57
75 76 5.869579 TCCAGGTCATTGATATTCCTAAGC 58.130 41.667 0.00 0.00 0.00 3.09
76 77 5.369404 TCCAGGTCATTGATATTCCTAAGCA 59.631 40.000 0.00 0.00 0.00 3.91
95 96 8.739972 CCTAAGCACCTTTCACATTTACTAATT 58.260 33.333 0.00 0.00 0.00 1.40
112 113 9.834628 TTTACTAATTCCAACTCGCTTTAAATG 57.165 29.630 0.00 0.00 0.00 2.32
139 140 5.362105 AATGGCGGTACTTATGTTTAGGA 57.638 39.130 0.00 0.00 0.00 2.94
141 142 3.770933 TGGCGGTACTTATGTTTAGGACT 59.229 43.478 0.00 0.00 0.00 3.85
142 143 4.142093 TGGCGGTACTTATGTTTAGGACTC 60.142 45.833 0.00 0.00 0.00 3.36
143 144 4.142093 GGCGGTACTTATGTTTAGGACTCA 60.142 45.833 0.00 0.00 0.00 3.41
164 165 8.635877 ACTCACTAATAAAACGAATGAGCTAG 57.364 34.615 0.00 0.00 36.41 3.42
178 180 8.038944 ACGAATGAGCTAGTTAAAGTTGGATTA 58.961 33.333 0.00 0.00 0.00 1.75
188 190 8.293699 AGTTAAAGTTGGATTATGGGCTTAAG 57.706 34.615 0.00 0.00 0.00 1.85
222 224 9.522804 TTTAAACATATGCGGCTAATTAAAAGG 57.477 29.630 1.58 0.00 0.00 3.11
224 226 6.952773 ACATATGCGGCTAATTAAAAGGAA 57.047 33.333 1.58 0.00 0.00 3.36
225 227 7.341445 ACATATGCGGCTAATTAAAAGGAAA 57.659 32.000 1.58 0.00 0.00 3.13
251 253 9.185680 AGATTATGGGTAAACAAGTGGAATAAC 57.814 33.333 0.00 0.00 0.00 1.89
316 378 2.524306 TGAGGCTTTAATGTGTTGGGG 58.476 47.619 0.00 0.00 0.00 4.96
317 379 2.158385 TGAGGCTTTAATGTGTTGGGGT 60.158 45.455 0.00 0.00 0.00 4.95
318 380 2.897326 GAGGCTTTAATGTGTTGGGGTT 59.103 45.455 0.00 0.00 0.00 4.11
323 385 5.477637 GGCTTTAATGTGTTGGGGTTACTAA 59.522 40.000 0.00 0.00 0.00 2.24
365 427 7.095695 GAATTTGATTCCCGACTAAAATGGA 57.904 36.000 0.00 0.00 33.17 3.41
392 454 6.708285 AGGACGTCATGGTAACTAAAGAAAT 58.292 36.000 18.91 0.00 37.61 2.17
452 515 4.815269 CCCGGCAAAGAAAATATGAACAA 58.185 39.130 0.00 0.00 0.00 2.83
515 579 0.870735 TGTTGCGTTGCAGCATGTTG 60.871 50.000 5.00 5.00 44.16 3.33
524 588 5.672570 GCGTTGCAGCATGTTGTTTATAGTA 60.673 40.000 11.44 0.00 39.31 1.82
529 593 8.279970 TGCAGCATGTTGTTTATAGTAAATCT 57.720 30.769 11.44 0.00 39.31 2.40
530 594 8.397906 TGCAGCATGTTGTTTATAGTAAATCTC 58.602 33.333 11.44 0.00 39.31 2.75
535 599 7.298507 TGTTGTTTATAGTAAATCTCGTGCC 57.701 36.000 0.00 0.00 0.00 5.01
560 624 4.020396 TGGGACATTATGCTTGCACAAAAT 60.020 37.500 0.00 0.00 0.00 1.82
588 652 4.948608 TTTTTCTGTTGCAACGTACAGA 57.051 36.364 23.79 18.52 46.57 3.41
593 657 3.985279 TCTGTTGCAACGTACAGACATAC 59.015 43.478 23.79 0.00 44.20 2.39
594 658 3.985008 TGTTGCAACGTACAGACATACT 58.015 40.909 23.79 0.00 0.00 2.12
621 685 9.525409 GTATGTGCTAGTATTATATAAACCGGG 57.475 37.037 6.32 0.00 0.00 5.73
622 686 6.938507 TGTGCTAGTATTATATAAACCGGGG 58.061 40.000 6.32 0.00 0.00 5.73
623 687 6.497954 TGTGCTAGTATTATATAAACCGGGGT 59.502 38.462 6.32 0.00 0.00 4.95
624 688 7.038048 GTGCTAGTATTATATAAACCGGGGTC 58.962 42.308 6.32 0.00 0.00 4.46
625 689 6.155049 TGCTAGTATTATATAAACCGGGGTCC 59.845 42.308 6.32 0.00 0.00 4.46
636 700 4.828296 GGGGTCCGGGCTAGTCGA 62.828 72.222 5.77 0.00 0.00 4.20
637 701 2.521224 GGGTCCGGGCTAGTCGAT 60.521 66.667 5.77 0.00 0.00 3.59
638 702 1.228367 GGGTCCGGGCTAGTCGATA 60.228 63.158 5.77 0.00 0.00 2.92
639 703 0.611340 GGGTCCGGGCTAGTCGATAT 60.611 60.000 5.77 0.00 0.00 1.63
640 704 1.340405 GGGTCCGGGCTAGTCGATATA 60.340 57.143 5.77 0.00 0.00 0.86
641 705 2.440409 GGTCCGGGCTAGTCGATATAA 58.560 52.381 5.77 0.00 0.00 0.98
642 706 2.163211 GGTCCGGGCTAGTCGATATAAC 59.837 54.545 5.77 0.00 0.00 1.89
643 707 2.816087 GTCCGGGCTAGTCGATATAACA 59.184 50.000 0.00 0.00 0.00 2.41
644 708 3.442977 GTCCGGGCTAGTCGATATAACAT 59.557 47.826 0.00 0.00 0.00 2.71
645 709 3.693085 TCCGGGCTAGTCGATATAACATC 59.307 47.826 0.00 0.00 0.00 3.06
646 710 3.695060 CCGGGCTAGTCGATATAACATCT 59.305 47.826 0.00 0.00 0.00 2.90
647 711 4.158025 CCGGGCTAGTCGATATAACATCTT 59.842 45.833 0.00 0.00 0.00 2.40
648 712 5.356190 CCGGGCTAGTCGATATAACATCTTA 59.644 44.000 0.00 0.00 0.00 2.10
649 713 6.256686 CGGGCTAGTCGATATAACATCTTAC 58.743 44.000 0.00 0.00 0.00 2.34
650 714 6.128090 CGGGCTAGTCGATATAACATCTTACA 60.128 42.308 0.00 0.00 0.00 2.41
651 715 7.028361 GGGCTAGTCGATATAACATCTTACAC 58.972 42.308 0.00 0.00 0.00 2.90
652 716 7.309012 GGGCTAGTCGATATAACATCTTACACA 60.309 40.741 0.00 0.00 0.00 3.72
653 717 8.080417 GGCTAGTCGATATAACATCTTACACAA 58.920 37.037 0.00 0.00 0.00 3.33
654 718 8.903723 GCTAGTCGATATAACATCTTACACAAC 58.096 37.037 0.00 0.00 0.00 3.32
655 719 9.946165 CTAGTCGATATAACATCTTACACAACA 57.054 33.333 0.00 0.00 0.00 3.33
656 720 8.858003 AGTCGATATAACATCTTACACAACAG 57.142 34.615 0.00 0.00 0.00 3.16
657 721 8.683615 AGTCGATATAACATCTTACACAACAGA 58.316 33.333 0.00 0.00 0.00 3.41
658 722 9.297586 GTCGATATAACATCTTACACAACAGAA 57.702 33.333 0.00 0.00 0.00 3.02
659 723 9.297586 TCGATATAACATCTTACACAACAGAAC 57.702 33.333 0.00 0.00 0.00 3.01
660 724 9.083080 CGATATAACATCTTACACAACAGAACA 57.917 33.333 0.00 0.00 0.00 3.18
709 773 2.618045 GGCTGGTAAACTATGGCAGTGT 60.618 50.000 0.00 0.00 37.63 3.55
719 783 2.425143 ATGGCAGTGTCCATACCAAG 57.575 50.000 14.96 0.00 44.60 3.61
724 788 2.436417 CAGTGTCCATACCAAGTTGGG 58.564 52.381 25.59 8.14 43.37 4.12
748 812 2.329614 CCACGTGGCCCCTAAAACG 61.330 63.158 24.02 9.29 41.64 3.60
750 814 2.670251 CGTGGCCCCTAAAACGCA 60.670 61.111 0.00 0.00 0.00 5.24
862 942 1.293683 ATCCCCATAAAACCCCGCCT 61.294 55.000 0.00 0.00 0.00 5.52
869 949 0.540133 TAAAACCCCGCCTGTTTCCC 60.540 55.000 0.00 0.00 34.97 3.97
879 959 1.342374 GCCTGTTTCCCCTCAATCCAT 60.342 52.381 0.00 0.00 0.00 3.41
880 960 2.889756 GCCTGTTTCCCCTCAATCCATT 60.890 50.000 0.00 0.00 0.00 3.16
922 1003 2.187946 CTCCCGCGCTCCAAATCT 59.812 61.111 5.56 0.00 0.00 2.40
923 1004 1.884926 CTCCCGCGCTCCAAATCTC 60.885 63.158 5.56 0.00 0.00 2.75
925 1006 3.264897 CCGCGCTCCAAATCTCCG 61.265 66.667 5.56 0.00 0.00 4.63
1481 1823 1.811266 CGGTGAAGATGGACTGCGG 60.811 63.158 0.00 0.00 0.00 5.69
1764 2112 2.611225 AGAGCGATTGGAAGATGGTC 57.389 50.000 0.00 0.00 0.00 4.02
1986 2334 1.629013 TACAGATTGTGCGCTTCTCG 58.371 50.000 9.73 4.08 42.12 4.04
2018 2366 1.815866 GAGAGGTGAGCTGCTCTCC 59.184 63.158 32.85 32.85 42.47 3.71
2024 2372 2.170187 AGGTGAGCTGCTCTCCATTAAG 59.830 50.000 37.61 0.00 43.98 1.85
2025 2373 2.093235 GGTGAGCTGCTCTCCATTAAGT 60.093 50.000 34.10 0.00 41.94 2.24
2028 2380 3.202097 GAGCTGCTCTCCATTAAGTTCC 58.798 50.000 21.93 0.00 35.77 3.62
2039 2391 5.263599 TCCATTAAGTTCCTGATGCATTGT 58.736 37.500 0.00 0.00 0.00 2.71
2044 2396 3.489355 AGTTCCTGATGCATTGTGAACA 58.511 40.909 25.14 9.97 35.68 3.18
2060 2412 5.771469 TGTGAACACATGATTGGAATTGAC 58.229 37.500 0.00 0.00 36.21 3.18
2064 2416 5.587388 ACACATGATTGGAATTGACATCC 57.413 39.130 0.00 0.00 37.48 3.51
2099 2451 8.457261 AGAATCATCTTAATCTTGTGCAACTTC 58.543 33.333 0.00 0.00 31.27 3.01
2123 2475 6.436847 TCTGATGGTTATTGCAGATTGGAAAA 59.563 34.615 0.00 0.00 32.85 2.29
2150 2502 0.951040 CGGAGTGGACAAAGTGCCTC 60.951 60.000 0.00 0.00 0.00 4.70
2156 2508 1.070786 GACAAAGTGCCTCGTCCCA 59.929 57.895 0.00 0.00 0.00 4.37
2183 2535 5.180304 GGTGAACTCTTCCAAAGTCAAGATC 59.820 44.000 0.00 0.00 0.00 2.75
2219 2571 2.472695 TTCCGACAATGGAACTGAGG 57.527 50.000 0.00 0.00 43.01 3.86
2306 2658 9.520204 CTGTGTGATTGATTTTGTTAGTTTTCT 57.480 29.630 0.00 0.00 0.00 2.52
2325 2677 5.903764 TTCTGTACATTGCACAATTTTGC 57.096 34.783 9.67 9.67 43.31 3.68
2341 2693 0.111061 TTGCCTGCAAGTCTGACCAT 59.889 50.000 3.76 0.00 0.00 3.55
2354 2706 4.082571 AGTCTGACCATTGCTAAATGTTGC 60.083 41.667 3.76 0.00 41.46 4.17
2357 2709 3.193267 TGACCATTGCTAAATGTTGCTCC 59.807 43.478 0.00 0.00 41.46 4.70
2462 2814 0.393537 CAGACAACCCTCTCCATGCC 60.394 60.000 0.00 0.00 0.00 4.40
2502 2854 4.284746 AGCTAAGGGCATCTATCAAGGTAC 59.715 45.833 0.00 0.00 44.79 3.34
2503 2855 4.563786 GCTAAGGGCATCTATCAAGGTACC 60.564 50.000 2.73 2.73 41.35 3.34
2527 2881 7.094205 ACCACTGAAGCCAATTTATTCAACTAG 60.094 37.037 0.00 0.00 32.87 2.57
2532 2886 4.936891 GCCAATTTATTCAACTAGGCTGG 58.063 43.478 0.00 0.00 37.89 4.85
2574 2928 6.594744 TGAATGGCTGATTCAGTATACATGT 58.405 36.000 14.90 2.69 44.65 3.21
2687 3042 7.942341 TCTGTTACTGTCCCAAATTATTCAGTT 59.058 33.333 0.00 0.00 37.35 3.16
2693 3048 6.511416 TGTCCCAAATTATTCAGTTTGTGTG 58.489 36.000 0.00 0.00 34.37 3.82
2723 3078 6.650807 GCATCTATAGCAAAGCAAGTATACCA 59.349 38.462 0.00 0.00 0.00 3.25
2769 3125 5.126222 TCTGTTGCTGTTCCACATTTGTAAA 59.874 36.000 0.00 0.00 0.00 2.01
2773 3129 4.202101 TGCTGTTCCACATTTGTAAACCAG 60.202 41.667 5.97 0.00 0.00 4.00
2810 3166 9.875675 GTATCTTTCTTTGATGCTAGCTTATTG 57.124 33.333 17.23 2.30 0.00 1.90
2850 3207 0.257039 AGGGTGATGCCAATGGAGAC 59.743 55.000 2.05 0.00 39.65 3.36
2853 3210 1.009829 GTGATGCCAATGGAGACGAC 58.990 55.000 2.05 0.00 0.00 4.34
2886 3243 0.741915 TTGTTGGACTTGAAACCCGC 59.258 50.000 0.00 0.00 0.00 6.13
2919 3276 1.338020 CAAACTTTTCCGGAGCAAGCT 59.662 47.619 20.30 9.65 0.00 3.74
3060 3417 5.852282 ATTTGCATGGGAACTAATGTACC 57.148 39.130 0.00 0.00 0.00 3.34
3061 3418 2.912771 TGCATGGGAACTAATGTACCG 58.087 47.619 0.00 0.00 0.00 4.02
3111 3468 1.001641 GGAAGCAGAGCCACCACAT 60.002 57.895 0.00 0.00 0.00 3.21
3315 3672 5.368145 TGATAATGGTCAGTGCTAATCACC 58.632 41.667 0.00 0.00 46.81 4.02
3401 3758 5.416083 ACAACCAAGTTTCCAAGTTTAAGC 58.584 37.500 0.00 0.00 0.00 3.09
3427 3784 0.614134 ACACGAGGAGGGGTAAGTCC 60.614 60.000 0.00 0.00 0.00 3.85
3514 3871 2.823984 TGCCTTGCATCTTGTTGTTTG 58.176 42.857 0.00 0.00 31.71 2.93
3638 3997 1.871039 GCATGTTTGGTGACACTACGT 59.129 47.619 5.39 0.00 42.67 3.57
3863 4225 2.380084 TTGCCCTGATACTGTCGAAC 57.620 50.000 0.00 0.00 0.00 3.95
3943 4305 2.806244 GTGATACCAGAACACGCACTTT 59.194 45.455 0.00 0.00 0.00 2.66
3975 4337 9.556772 CCAATATAAGAGGAGGTACCCTTATTA 57.443 37.037 19.86 11.90 39.91 0.98
4016 4378 3.525609 TGGGTCAATGGAAGGTAAGCATA 59.474 43.478 0.00 0.00 0.00 3.14
4202 4572 6.877611 ATCAACTTGTTTGTCCGTAAGAAT 57.122 33.333 0.00 0.00 36.43 2.40
4203 4573 6.295039 TCAACTTGTTTGTCCGTAAGAATC 57.705 37.500 0.00 0.00 36.43 2.52
4213 4587 5.845103 TGTCCGTAAGAATCACTACACAAA 58.155 37.500 0.00 0.00 43.02 2.83
4431 4805 7.069331 TGTCAATGGTCTTTTATGTCCAGTTTT 59.931 33.333 0.00 0.00 33.33 2.43
4436 4810 6.040391 TGGTCTTTTATGTCCAGTTTTGAAGG 59.960 38.462 0.00 0.00 0.00 3.46
4450 4824 9.010029 CCAGTTTTGAAGGTAATAGCTTTTCTA 57.990 33.333 6.16 0.00 35.86 2.10
4451 4825 9.827411 CAGTTTTGAAGGTAATAGCTTTTCTAC 57.173 33.333 6.16 3.94 35.86 2.59
4452 4826 9.569122 AGTTTTGAAGGTAATAGCTTTTCTACA 57.431 29.630 6.16 0.00 35.86 2.74
4454 4828 9.569122 TTTTGAAGGTAATAGCTTTTCTACAGT 57.431 29.630 6.16 0.00 35.86 3.55
4455 4829 8.547967 TTGAAGGTAATAGCTTTTCTACAGTG 57.452 34.615 6.16 0.00 35.86 3.66
4456 4830 7.676947 TGAAGGTAATAGCTTTTCTACAGTGT 58.323 34.615 6.16 0.00 35.86 3.55
4709 5091 9.391006 TGTTTAGATGTGATAATTCCAAGTACC 57.609 33.333 0.00 0.00 0.00 3.34
4713 5095 7.509546 AGATGTGATAATTCCAAGTACCGAAT 58.490 34.615 0.00 0.00 0.00 3.34
4717 5099 8.240682 TGTGATAATTCCAAGTACCGAATTTTG 58.759 33.333 14.73 1.98 39.04 2.44
4723 5105 4.888239 TCCAAGTACCGAATTTTGTGGAAA 59.112 37.500 0.00 0.00 31.11 3.13
4738 5120 4.272489 TGTGGAAATTCTTATCCAGCCTG 58.728 43.478 0.00 0.00 46.01 4.85
4828 5212 4.508124 AGTCTTCTTTGCTTCTTACGTGTG 59.492 41.667 0.00 0.00 0.00 3.82
4860 5244 6.127479 TGGTGTAATTCAAATTGGTATGGCTC 60.127 38.462 0.00 0.00 0.00 4.70
4918 5302 9.087424 GAAAATTTATAACCTGATTCACAAGCC 57.913 33.333 0.00 0.00 0.00 4.35
4927 5311 4.549458 CTGATTCACAAGCCGTTTTGATT 58.451 39.130 3.48 0.00 0.00 2.57
4928 5312 4.545610 TGATTCACAAGCCGTTTTGATTC 58.454 39.130 3.48 0.00 0.00 2.52
4934 5318 0.323451 AGCCGTTTTGATTCCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
4988 5372 4.570926 AGAATGGTGATGAGAGGGGATTA 58.429 43.478 0.00 0.00 0.00 1.75
5015 5399 4.844349 TGTCAAAGCTATTCTTAGGCCT 57.156 40.909 11.78 11.78 33.88 5.19
5067 5451 4.265073 AGACAAGATGGGAAAGTATGCAC 58.735 43.478 0.00 0.00 0.00 4.57
5118 5502 7.985476 TCTTAGTTGCATAAATAAGTGCCTTC 58.015 34.615 5.73 0.00 42.24 3.46
5120 5504 5.016173 AGTTGCATAAATAAGTGCCTTCCA 58.984 37.500 0.00 0.00 40.56 3.53
5204 5588 2.218603 CCAGCTAACGTTGAGGTTGTT 58.781 47.619 11.99 0.00 0.00 2.83
5275 5659 6.528321 TCAGGAGATCAAAGGTATATGCTTG 58.472 40.000 0.00 0.00 0.00 4.01
5373 5757 5.343593 GCGAGAATCTAATAGTTCATGGACG 59.656 44.000 0.00 0.00 0.00 4.79
5382 5766 8.311836 TCTAATAGTTCATGGACGAGTTTCTTT 58.688 33.333 0.00 0.00 0.00 2.52
5425 5809 4.022849 GTCTTTCCATTCCAACAGGTTCAG 60.023 45.833 0.00 0.00 0.00 3.02
5545 5929 3.197766 TGGTCATCAGGTTAGCCACTAAG 59.802 47.826 0.00 0.00 37.19 2.18
5546 5930 3.197983 GGTCATCAGGTTAGCCACTAAGT 59.802 47.826 0.00 0.00 37.19 2.24
5559 5943 3.492482 GCCACTAAGTGCAACAAAACCAT 60.492 43.478 0.00 0.00 41.43 3.55
5576 5960 2.835764 ACCATTGCCTTGCATTTCATCT 59.164 40.909 0.00 0.00 38.76 2.90
5577 5961 3.194861 CCATTGCCTTGCATTTCATCTG 58.805 45.455 0.00 0.00 38.76 2.90
5578 5962 2.373540 TTGCCTTGCATTTCATCTGC 57.626 45.000 0.00 0.00 38.76 4.26
5579 5963 1.552578 TGCCTTGCATTTCATCTGCT 58.447 45.000 0.00 0.00 40.34 4.24
5580 5964 1.475280 TGCCTTGCATTTCATCTGCTC 59.525 47.619 0.00 0.00 40.34 4.26
5581 5965 1.475280 GCCTTGCATTTCATCTGCTCA 59.525 47.619 0.00 0.00 40.34 4.26
5582 5966 2.100916 GCCTTGCATTTCATCTGCTCAT 59.899 45.455 0.00 0.00 40.34 2.90
5583 5967 3.795826 GCCTTGCATTTCATCTGCTCATC 60.796 47.826 0.00 0.00 40.34 2.92
5584 5968 3.380320 CCTTGCATTTCATCTGCTCATCA 59.620 43.478 0.00 0.00 40.34 3.07
5585 5969 4.038042 CCTTGCATTTCATCTGCTCATCAT 59.962 41.667 0.00 0.00 40.34 2.45
5586 5970 4.830826 TGCATTTCATCTGCTCATCATC 57.169 40.909 0.00 0.00 40.34 2.92
5587 5971 4.461198 TGCATTTCATCTGCTCATCATCT 58.539 39.130 0.00 0.00 40.34 2.90
5588 5972 4.887655 TGCATTTCATCTGCTCATCATCTT 59.112 37.500 0.00 0.00 40.34 2.40
5589 5973 5.008712 TGCATTTCATCTGCTCATCATCTTC 59.991 40.000 0.00 0.00 40.34 2.87
5590 5974 5.239744 GCATTTCATCTGCTCATCATCTTCT 59.760 40.000 0.00 0.00 36.68 2.85
5591 5975 6.427242 GCATTTCATCTGCTCATCATCTTCTA 59.573 38.462 0.00 0.00 36.68 2.10
5592 5976 7.041303 GCATTTCATCTGCTCATCATCTTCTAA 60.041 37.037 0.00 0.00 36.68 2.10
5593 5977 9.004717 CATTTCATCTGCTCATCATCTTCTAAT 57.995 33.333 0.00 0.00 0.00 1.73
5594 5978 8.975663 TTTCATCTGCTCATCATCTTCTAATT 57.024 30.769 0.00 0.00 0.00 1.40
5595 5979 8.604640 TTCATCTGCTCATCATCTTCTAATTC 57.395 34.615 0.00 0.00 0.00 2.17
5596 5980 7.160049 TCATCTGCTCATCATCTTCTAATTCC 58.840 38.462 0.00 0.00 0.00 3.01
5597 5981 6.744175 TCTGCTCATCATCTTCTAATTCCT 57.256 37.500 0.00 0.00 0.00 3.36
5598 5982 7.134362 TCTGCTCATCATCTTCTAATTCCTT 57.866 36.000 0.00 0.00 0.00 3.36
5599 5983 7.571919 TCTGCTCATCATCTTCTAATTCCTTT 58.428 34.615 0.00 0.00 0.00 3.11
5600 5984 7.498239 TCTGCTCATCATCTTCTAATTCCTTTG 59.502 37.037 0.00 0.00 0.00 2.77
5601 5985 6.039047 TGCTCATCATCTTCTAATTCCTTTGC 59.961 38.462 0.00 0.00 0.00 3.68
5602 5986 6.262720 GCTCATCATCTTCTAATTCCTTTGCT 59.737 38.462 0.00 0.00 0.00 3.91
5603 5987 7.563888 TCATCATCTTCTAATTCCTTTGCTG 57.436 36.000 0.00 0.00 0.00 4.41
5604 5988 7.341030 TCATCATCTTCTAATTCCTTTGCTGA 58.659 34.615 0.00 0.00 0.00 4.26
5605 5989 7.830697 TCATCATCTTCTAATTCCTTTGCTGAA 59.169 33.333 0.00 0.00 0.00 3.02
5606 5990 7.621428 TCATCTTCTAATTCCTTTGCTGAAG 57.379 36.000 0.00 0.00 35.02 3.02
5607 5991 7.170965 TCATCTTCTAATTCCTTTGCTGAAGT 58.829 34.615 0.00 0.00 33.29 3.01
5608 5992 7.667219 TCATCTTCTAATTCCTTTGCTGAAGTT 59.333 33.333 0.00 0.00 33.29 2.66
5609 5993 7.206981 TCTTCTAATTCCTTTGCTGAAGTTG 57.793 36.000 0.00 0.00 33.29 3.16
5616 6000 2.298163 CCTTTGCTGAAGTTGGCTCATT 59.702 45.455 0.00 0.00 33.29 2.57
5680 6066 3.286329 ACCAAAAAGTACACCGACCTT 57.714 42.857 0.00 0.00 0.00 3.50
5718 6104 0.326927 TTCCTTAAAGGGGCACGGAG 59.673 55.000 0.00 0.00 35.59 4.63
5749 6135 1.298340 CCGTGCCATTGTACCCTCA 59.702 57.895 0.00 0.00 0.00 3.86
5770 6156 3.935203 CACGAGCATTTGTAGAGGATGTT 59.065 43.478 0.00 0.00 0.00 2.71
5884 6270 3.695606 TGCCGTGAGTGCCTCCTC 61.696 66.667 0.50 0.00 0.00 3.71
5888 6274 1.979155 CGTGAGTGCCTCCTCTCCA 60.979 63.158 0.50 0.00 32.06 3.86
5986 6372 2.261671 CAGTGCCGCTACGAGGTT 59.738 61.111 0.00 0.00 0.00 3.50
6110 6496 6.072783 CCAGTTCACTTCTTTCTTTGATCTCC 60.073 42.308 0.00 0.00 0.00 3.71
6112 6498 6.934083 AGTTCACTTCTTTCTTTGATCTCCTC 59.066 38.462 0.00 0.00 0.00 3.71
6220 6606 3.629398 AGTTCAGTCAAAGCAAGGACAAG 59.371 43.478 4.78 0.00 36.50 3.16
6241 6627 6.260936 ACAAGCTGGTATGTATGCTCATTTAC 59.739 38.462 0.00 0.00 34.38 2.01
6244 6630 6.484643 AGCTGGTATGTATGCTCATTTACTTG 59.515 38.462 0.00 0.00 0.00 3.16
6247 6633 8.208718 TGGTATGTATGCTCATTTACTTGTTC 57.791 34.615 0.00 0.00 0.00 3.18
6270 6679 8.694394 GTTCAGTAATTCTTGAAGCATTTTCAC 58.306 33.333 0.00 0.00 0.00 3.18
6297 6712 6.322201 TGCTGATCTTTTATCCCTGGAAATTC 59.678 38.462 0.00 0.00 0.00 2.17
6311 6726 3.696051 TGGAAATTCATTAGGTGCTGCTC 59.304 43.478 0.00 0.00 0.00 4.26
6356 6771 1.374190 CCTGAACCTGACTGCTGCT 59.626 57.895 0.00 0.00 0.00 4.24
6396 6812 2.514458 AATTCCACCTTGCTACCCTG 57.486 50.000 0.00 0.00 0.00 4.45
6404 6820 1.512926 CTTGCTACCCTGTGTGTCAC 58.487 55.000 0.00 0.00 34.56 3.67
6445 6862 6.743575 ACTACTTTTGCTTGGTGATACATC 57.256 37.500 0.00 0.00 0.00 3.06
6446 6863 5.648092 ACTACTTTTGCTTGGTGATACATCC 59.352 40.000 0.00 0.00 0.00 3.51
6457 6874 3.039011 GTGATACATCCCCTGTGGTAGT 58.961 50.000 0.00 0.00 38.92 2.73
6460 6877 5.129815 GTGATACATCCCCTGTGGTAGTAAA 59.870 44.000 0.00 0.00 38.92 2.01
6463 6880 5.112129 ACATCCCCTGTGGTAGTAAAATC 57.888 43.478 0.00 0.00 36.48 2.17
6466 6883 4.172807 TCCCCTGTGGTAGTAAAATCTGT 58.827 43.478 0.00 0.00 34.77 3.41
6467 6884 4.019681 TCCCCTGTGGTAGTAAAATCTGTG 60.020 45.833 0.00 0.00 34.77 3.66
6468 6885 4.019681 CCCCTGTGGTAGTAAAATCTGTGA 60.020 45.833 0.00 0.00 0.00 3.58
6469 6886 4.935808 CCCTGTGGTAGTAAAATCTGTGAC 59.064 45.833 0.00 0.00 0.00 3.67
6487 6904 6.038161 TCTGTGACAATAACCAAGTTCTGTTG 59.962 38.462 0.00 0.00 0.00 3.33
6493 6910 6.071616 ACAATAACCAAGTTCTGTTGTGTGTT 60.072 34.615 0.00 0.00 30.56 3.32
6745 7162 1.679977 GCTCCTTTGCTGCCATGGA 60.680 57.895 18.40 7.90 0.00 3.41
6767 7188 6.901300 TGGACTCCAGGATTTTGTATAGTAGT 59.099 38.462 0.00 0.00 0.00 2.73
6825 7379 4.835615 CAGTAGTATGTAGGGAAGATGGCT 59.164 45.833 0.00 0.00 0.00 4.75
6826 7380 5.047660 CAGTAGTATGTAGGGAAGATGGCTC 60.048 48.000 0.00 0.00 0.00 4.70
6865 7419 0.395724 GTGGGGATGGAATGGGTGTC 60.396 60.000 0.00 0.00 0.00 3.67
6968 7523 5.551760 TGAATTCGAAGGAGAAATCTTGC 57.448 39.130 3.35 0.00 32.74 4.01
7008 7564 2.626840 GGAGCTGATCCTCTGTTCAAC 58.373 52.381 4.35 0.00 45.64 3.18
7078 7639 8.322906 TGAATTATTACAACTTCCACTGTCAG 57.677 34.615 0.00 0.00 0.00 3.51
7092 7653 3.738282 CACTGTCAGAGCTGTACAAGTTC 59.262 47.826 6.91 0.00 36.42 3.01
7109 7693 3.959293 AGTTCACAGATTCATGGATGCA 58.041 40.909 0.00 0.00 0.00 3.96
7249 7839 2.747460 CACCGTCGTCTCCCCGTA 60.747 66.667 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.710900 AAAATGAAGAAAACTTCTGTCAAACTT 57.289 25.926 10.54 0.00 40.59 2.66
1 2 9.710900 AAAAATGAAGAAAACTTCTGTCAAACT 57.289 25.926 10.54 0.00 40.59 2.66
3 4 9.703892 TCAAAAATGAAGAAAACTTCTGTCAAA 57.296 25.926 10.54 0.00 40.59 2.69
5 6 9.874205 ATTCAAAAATGAAGAAAACTTCTGTCA 57.126 25.926 10.54 4.89 40.59 3.58
32 33 9.981460 ACCTGGAGATATAGAAAAAGTTTGATT 57.019 29.630 0.00 0.00 0.00 2.57
33 34 9.620259 GACCTGGAGATATAGAAAAAGTTTGAT 57.380 33.333 0.00 0.00 0.00 2.57
34 35 8.602424 TGACCTGGAGATATAGAAAAAGTTTGA 58.398 33.333 0.00 0.00 0.00 2.69
35 36 8.792830 TGACCTGGAGATATAGAAAAAGTTTG 57.207 34.615 0.00 0.00 0.00 2.93
36 37 9.981460 AATGACCTGGAGATATAGAAAAAGTTT 57.019 29.630 0.00 0.00 0.00 2.66
37 38 9.401058 CAATGACCTGGAGATATAGAAAAAGTT 57.599 33.333 0.00 0.00 0.00 2.66
38 39 8.772250 TCAATGACCTGGAGATATAGAAAAAGT 58.228 33.333 0.00 0.00 0.00 2.66
39 40 9.790344 ATCAATGACCTGGAGATATAGAAAAAG 57.210 33.333 0.00 0.00 0.00 2.27
44 45 9.206690 GGAATATCAATGACCTGGAGATATAGA 57.793 37.037 0.00 0.00 33.03 1.98
45 46 9.211410 AGGAATATCAATGACCTGGAGATATAG 57.789 37.037 0.00 0.00 33.03 1.31
47 48 9.566331 TTAGGAATATCAATGACCTGGAGATAT 57.434 33.333 0.00 3.10 34.36 1.63
48 49 8.972662 TTAGGAATATCAATGACCTGGAGATA 57.027 34.615 0.00 0.82 32.90 1.98
49 50 7.528543 GCTTAGGAATATCAATGACCTGGAGAT 60.529 40.741 0.00 0.00 32.90 2.75
50 51 6.239714 GCTTAGGAATATCAATGACCTGGAGA 60.240 42.308 0.00 0.00 32.90 3.71
51 52 5.936956 GCTTAGGAATATCAATGACCTGGAG 59.063 44.000 0.00 1.13 32.90 3.86
52 53 5.369404 TGCTTAGGAATATCAATGACCTGGA 59.631 40.000 0.00 0.00 32.90 3.86
53 54 5.471456 GTGCTTAGGAATATCAATGACCTGG 59.529 44.000 0.91 0.00 32.90 4.45
54 55 5.471456 GGTGCTTAGGAATATCAATGACCTG 59.529 44.000 0.91 0.00 32.90 4.00
55 56 5.370880 AGGTGCTTAGGAATATCAATGACCT 59.629 40.000 0.00 0.00 35.11 3.85
56 57 5.625150 AGGTGCTTAGGAATATCAATGACC 58.375 41.667 0.00 0.00 0.00 4.02
57 58 7.283127 TGAAAGGTGCTTAGGAATATCAATGAC 59.717 37.037 0.00 0.00 0.00 3.06
58 59 7.283127 GTGAAAGGTGCTTAGGAATATCAATGA 59.717 37.037 0.00 0.00 0.00 2.57
59 60 7.067372 TGTGAAAGGTGCTTAGGAATATCAATG 59.933 37.037 0.00 0.00 0.00 2.82
60 61 7.118723 TGTGAAAGGTGCTTAGGAATATCAAT 58.881 34.615 0.00 0.00 0.00 2.57
61 62 6.480763 TGTGAAAGGTGCTTAGGAATATCAA 58.519 36.000 0.00 0.00 0.00 2.57
62 63 6.061022 TGTGAAAGGTGCTTAGGAATATCA 57.939 37.500 0.00 0.00 0.00 2.15
63 64 7.573968 AATGTGAAAGGTGCTTAGGAATATC 57.426 36.000 0.00 0.00 0.00 1.63
64 65 7.961326 AAATGTGAAAGGTGCTTAGGAATAT 57.039 32.000 0.00 0.00 0.00 1.28
65 66 8.107095 AGTAAATGTGAAAGGTGCTTAGGAATA 58.893 33.333 0.00 0.00 0.00 1.75
66 67 6.948309 AGTAAATGTGAAAGGTGCTTAGGAAT 59.052 34.615 0.00 0.00 0.00 3.01
67 68 6.303839 AGTAAATGTGAAAGGTGCTTAGGAA 58.696 36.000 0.00 0.00 0.00 3.36
68 69 5.876357 AGTAAATGTGAAAGGTGCTTAGGA 58.124 37.500 0.00 0.00 0.00 2.94
75 76 8.576442 AGTTGGAATTAGTAAATGTGAAAGGTG 58.424 33.333 0.00 0.00 0.00 4.00
76 77 8.706322 AGTTGGAATTAGTAAATGTGAAAGGT 57.294 30.769 0.00 0.00 0.00 3.50
95 96 4.558178 TCGTACATTTAAAGCGAGTTGGA 58.442 39.130 0.00 0.00 0.00 3.53
112 113 3.709987 ACATAAGTACCGCCATTCGTAC 58.290 45.455 0.00 0.00 36.19 3.67
139 140 8.251721 ACTAGCTCATTCGTTTTATTAGTGAGT 58.748 33.333 0.00 0.00 35.32 3.41
141 142 8.997621 AACTAGCTCATTCGTTTTATTAGTGA 57.002 30.769 0.00 0.00 0.00 3.41
149 150 7.227910 TCCAACTTTAACTAGCTCATTCGTTTT 59.772 33.333 0.00 0.00 0.00 2.43
152 153 5.790593 TCCAACTTTAACTAGCTCATTCGT 58.209 37.500 0.00 0.00 0.00 3.85
164 165 8.063200 ACTTAAGCCCATAATCCAACTTTAAC 57.937 34.615 1.29 0.00 0.00 2.01
208 210 8.082242 CCCATAATCTTTCCTTTTAATTAGCCG 58.918 37.037 0.00 0.00 0.00 5.52
220 222 6.663523 CCACTTGTTTACCCATAATCTTTCCT 59.336 38.462 0.00 0.00 0.00 3.36
221 223 6.661805 TCCACTTGTTTACCCATAATCTTTCC 59.338 38.462 0.00 0.00 0.00 3.13
222 224 7.696992 TCCACTTGTTTACCCATAATCTTTC 57.303 36.000 0.00 0.00 0.00 2.62
224 226 9.762381 TTATTCCACTTGTTTACCCATAATCTT 57.238 29.630 0.00 0.00 0.00 2.40
225 227 9.185680 GTTATTCCACTTGTTTACCCATAATCT 57.814 33.333 0.00 0.00 0.00 2.40
343 405 6.833416 TCATCCATTTTAGTCGGGAATCAAAT 59.167 34.615 0.00 0.00 32.25 2.32
365 427 5.421056 TCTTTAGTTACCATGACGTCCTCAT 59.579 40.000 14.12 0.00 40.59 2.90
404 466 9.678260 GCATAATCTCCCACTCATTCTATTTAT 57.322 33.333 0.00 0.00 0.00 1.40
410 472 3.073650 GGGCATAATCTCCCACTCATTCT 59.926 47.826 0.00 0.00 42.18 2.40
415 477 0.035458 CCGGGCATAATCTCCCACTC 59.965 60.000 0.00 0.00 42.75 3.51
433 495 5.482006 AGCCTTGTTCATATTTTCTTTGCC 58.518 37.500 0.00 0.00 0.00 4.52
434 497 8.532977 TTTAGCCTTGTTCATATTTTCTTTGC 57.467 30.769 0.00 0.00 0.00 3.68
535 599 1.093972 TGCAAGCATAATGTCCCACG 58.906 50.000 0.00 0.00 0.00 4.94
573 637 3.738791 CAGTATGTCTGTACGTTGCAACA 59.261 43.478 28.01 9.56 39.17 3.33
595 659 9.525409 CCCGGTTTATATAATACTAGCACATAC 57.475 37.037 0.00 0.00 0.00 2.39
596 660 8.698210 CCCCGGTTTATATAATACTAGCACATA 58.302 37.037 0.00 0.00 0.00 2.29
597 661 7.181485 ACCCCGGTTTATATAATACTAGCACAT 59.819 37.037 0.00 0.00 0.00 3.21
598 662 6.497954 ACCCCGGTTTATATAATACTAGCACA 59.502 38.462 0.00 0.00 0.00 4.57
599 663 6.939622 ACCCCGGTTTATATAATACTAGCAC 58.060 40.000 0.00 0.00 0.00 4.40
600 664 6.155049 GGACCCCGGTTTATATAATACTAGCA 59.845 42.308 0.00 0.00 0.00 3.49
601 665 6.577103 GGACCCCGGTTTATATAATACTAGC 58.423 44.000 0.00 0.00 0.00 3.42
602 666 6.799512 CGGACCCCGGTTTATATAATACTAG 58.200 44.000 0.00 0.00 44.15 2.57
603 667 6.773976 CGGACCCCGGTTTATATAATACTA 57.226 41.667 0.00 0.00 44.15 1.82
604 668 5.665916 CGGACCCCGGTTTATATAATACT 57.334 43.478 0.00 0.00 44.15 2.12
619 683 2.703675 TATCGACTAGCCCGGACCCC 62.704 65.000 0.73 0.00 0.00 4.95
620 684 0.611340 ATATCGACTAGCCCGGACCC 60.611 60.000 0.73 0.00 0.00 4.46
621 685 2.119801 TATATCGACTAGCCCGGACC 57.880 55.000 0.73 0.00 0.00 4.46
622 686 2.816087 TGTTATATCGACTAGCCCGGAC 59.184 50.000 0.73 0.00 0.00 4.79
623 687 3.144657 TGTTATATCGACTAGCCCGGA 57.855 47.619 0.73 0.00 0.00 5.14
624 688 3.695060 AGATGTTATATCGACTAGCCCGG 59.305 47.826 0.00 0.00 0.00 5.73
625 689 4.966965 AGATGTTATATCGACTAGCCCG 57.033 45.455 0.00 0.00 0.00 6.13
626 690 7.028361 GTGTAAGATGTTATATCGACTAGCCC 58.972 42.308 0.00 0.00 0.00 5.19
627 691 7.591165 TGTGTAAGATGTTATATCGACTAGCC 58.409 38.462 0.00 0.00 0.00 3.93
628 692 8.903723 GTTGTGTAAGATGTTATATCGACTAGC 58.096 37.037 0.00 0.00 0.00 3.42
629 693 9.946165 TGTTGTGTAAGATGTTATATCGACTAG 57.054 33.333 0.00 0.00 0.00 2.57
630 694 9.946165 CTGTTGTGTAAGATGTTATATCGACTA 57.054 33.333 0.00 0.00 0.00 2.59
631 695 8.683615 TCTGTTGTGTAAGATGTTATATCGACT 58.316 33.333 0.00 0.00 0.00 4.18
632 696 8.851960 TCTGTTGTGTAAGATGTTATATCGAC 57.148 34.615 0.00 0.00 0.00 4.20
633 697 9.297586 GTTCTGTTGTGTAAGATGTTATATCGA 57.702 33.333 0.00 0.00 0.00 3.59
634 698 9.083080 TGTTCTGTTGTGTAAGATGTTATATCG 57.917 33.333 0.00 0.00 0.00 2.92
664 728 8.924303 GCCATCTAAATAAAGACCCCTAAATTT 58.076 33.333 0.00 0.00 0.00 1.82
665 729 8.289544 AGCCATCTAAATAAAGACCCCTAAATT 58.710 33.333 0.00 0.00 0.00 1.82
666 730 7.725844 CAGCCATCTAAATAAAGACCCCTAAAT 59.274 37.037 0.00 0.00 0.00 1.40
667 731 7.060421 CAGCCATCTAAATAAAGACCCCTAAA 58.940 38.462 0.00 0.00 0.00 1.85
668 732 6.410388 CCAGCCATCTAAATAAAGACCCCTAA 60.410 42.308 0.00 0.00 0.00 2.69
669 733 5.073144 CCAGCCATCTAAATAAAGACCCCTA 59.927 44.000 0.00 0.00 0.00 3.53
670 734 4.141158 CCAGCCATCTAAATAAAGACCCCT 60.141 45.833 0.00 0.00 0.00 4.79
671 735 4.145052 CCAGCCATCTAAATAAAGACCCC 58.855 47.826 0.00 0.00 0.00 4.95
672 736 4.793201 ACCAGCCATCTAAATAAAGACCC 58.207 43.478 0.00 0.00 0.00 4.46
709 773 1.005450 GCCTTCCCAACTTGGTATGGA 59.995 52.381 8.96 0.00 39.12 3.41
742 806 6.038382 TGAGGTGAAAATTACAGTGCGTTTTA 59.962 34.615 0.00 0.00 0.00 1.52
748 812 3.364964 CGGTGAGGTGAAAATTACAGTGC 60.365 47.826 0.00 0.00 0.00 4.40
750 814 2.812011 GCGGTGAGGTGAAAATTACAGT 59.188 45.455 0.00 0.00 0.00 3.55
862 942 2.292192 GGGAATGGATTGAGGGGAAACA 60.292 50.000 0.00 0.00 0.00 2.83
869 949 1.133668 GGAGTGGGGAATGGATTGAGG 60.134 57.143 0.00 0.00 0.00 3.86
914 995 2.098233 GCGCGAACGGAGATTTGGA 61.098 57.895 12.10 0.00 40.57 3.53
1289 1598 4.101448 CCTCGGCCTTCACCCTGG 62.101 72.222 0.00 0.00 0.00 4.45
1317 1626 4.803908 GGCCGCTCCTTCTTGGGG 62.804 72.222 0.00 0.00 40.05 4.96
2018 2366 6.198650 TCACAATGCATCAGGAACTTAATG 57.801 37.500 0.00 0.00 34.60 1.90
2024 2372 3.004629 TGTGTTCACAATGCATCAGGAAC 59.995 43.478 21.22 21.22 36.18 3.62
2025 2373 3.220940 TGTGTTCACAATGCATCAGGAA 58.779 40.909 0.00 0.98 0.00 3.36
2028 2380 4.428615 TCATGTGTTCACAATGCATCAG 57.571 40.909 9.68 0.00 0.00 2.90
2039 2391 6.350361 GGATGTCAATTCCAATCATGTGTTCA 60.350 38.462 0.00 0.00 33.21 3.18
2044 2396 6.096423 CAGAAGGATGTCAATTCCAATCATGT 59.904 38.462 0.00 0.00 35.59 3.21
2099 2451 5.840243 TTCCAATCTGCAATAACCATCAG 57.160 39.130 0.00 0.00 0.00 2.90
2150 2502 0.393077 AAGAGTTCACCAGTGGGACG 59.607 55.000 15.21 1.28 38.05 4.79
2156 2508 3.199946 TGACTTTGGAAGAGTTCACCAGT 59.800 43.478 0.00 0.00 35.08 4.00
2183 2535 1.679032 GGAAACACGATCTTCCCCTGG 60.679 57.143 0.00 0.00 35.95 4.45
2263 2615 3.165890 CACAGCAAAGCACATTGTATCG 58.834 45.455 0.00 0.00 32.80 2.92
2306 2658 4.056740 CAGGCAAAATTGTGCAATGTACA 58.943 39.130 21.93 0.00 46.81 2.90
2325 2677 0.524862 GCAATGGTCAGACTTGCAGG 59.475 55.000 18.27 0.00 43.62 4.85
2354 2706 3.701542 TGTGGATGTAGAAGCTGTAGGAG 59.298 47.826 0.00 0.00 0.00 3.69
2357 2709 5.078411 ACTTGTGGATGTAGAAGCTGTAG 57.922 43.478 0.00 0.00 0.00 2.74
2426 2778 7.092716 GGTTGTCTGAATAATCAACATTTGCT 58.907 34.615 9.40 0.00 40.96 3.91
2462 2814 6.127897 CCCTTAGCTTGAGTAATTTGAACAGG 60.128 42.308 0.00 0.00 0.00 4.00
2502 2854 6.029346 AGTTGAATAAATTGGCTTCAGTGG 57.971 37.500 0.00 0.00 31.11 4.00
2503 2855 7.253422 CCTAGTTGAATAAATTGGCTTCAGTG 58.747 38.462 0.00 0.00 31.11 3.66
2527 2881 0.465460 TGAACACCACAAGACCAGCC 60.465 55.000 0.00 0.00 0.00 4.85
2530 2884 3.148412 CATCATGAACACCACAAGACCA 58.852 45.455 0.00 0.00 0.00 4.02
2532 2886 5.396484 CATTCATCATGAACACCACAAGAC 58.604 41.667 0.98 0.00 39.45 3.01
2574 2928 3.870419 GTGAAATCAGCCTGCAAAACAAA 59.130 39.130 0.00 0.00 0.00 2.83
2649 3004 6.127026 GGGACAGTAACAGATAACAAGAGGAT 60.127 42.308 0.00 0.00 0.00 3.24
2655 3010 9.747898 ATAATTTGGGACAGTAACAGATAACAA 57.252 29.630 0.00 0.00 42.39 2.83
2687 3042 7.626240 GCTTTGCTATAGATGCTAAACACACAA 60.626 37.037 3.21 0.00 0.00 3.33
2693 3048 7.020914 ACTTGCTTTGCTATAGATGCTAAAC 57.979 36.000 3.21 0.00 0.00 2.01
2773 3129 9.185192 CATCAAAGAAAGATACAGAAACCAAAC 57.815 33.333 0.00 0.00 0.00 2.93
2886 3243 4.347453 GTTTGCCCAGCTGTGCGG 62.347 66.667 16.57 9.81 0.00 5.69
3074 3431 9.260002 CTGCTTCCTGTTTTAAATGTTGTAAAT 57.740 29.630 0.00 0.00 0.00 1.40
3076 3433 8.001881 TCTGCTTCCTGTTTTAAATGTTGTAA 57.998 30.769 0.00 0.00 0.00 2.41
3082 3439 4.022068 TGGCTCTGCTTCCTGTTTTAAATG 60.022 41.667 0.00 0.00 0.00 2.32
3085 3442 2.884639 GTGGCTCTGCTTCCTGTTTTAA 59.115 45.455 0.00 0.00 0.00 1.52
3091 3448 1.673665 GTGGTGGCTCTGCTTCCTG 60.674 63.158 0.00 0.00 0.00 3.86
3111 3468 5.522460 CGGTTTGAGAACAGAAACAAGAGTA 59.478 40.000 0.00 0.00 37.51 2.59
3289 3646 7.189512 GTGATTAGCACTGACCATTATCAAAC 58.810 38.462 0.00 0.00 44.27 2.93
3315 3672 5.525378 CCCTCCTGAGAAGATAAACAATTCG 59.475 44.000 0.00 0.00 0.00 3.34
3401 3758 1.213013 CCCTCCTCGTGTCGTCTTG 59.787 63.158 0.00 0.00 0.00 3.02
3427 3784 7.521099 GCACATACATGAGGAACCATCATAAAG 60.521 40.741 0.00 0.00 35.64 1.85
3484 3841 6.103997 ACAAGATGCAAGGCAAAATGATAAG 58.896 36.000 0.00 0.00 43.62 1.73
3766 4128 9.937175 GCAAAGATAACACATAAATACTTCTCC 57.063 33.333 0.00 0.00 0.00 3.71
3943 4305 3.598264 CCTCCTCTTATATTGGGGGTCA 58.402 50.000 0.00 0.00 36.75 4.02
4091 4460 3.969287 TTGCAGACTCTAGCAGTTCAT 57.031 42.857 0.00 0.00 42.39 2.57
4177 4547 7.789273 TTCTTACGGACAAACAAGTTGATTA 57.211 32.000 10.54 0.00 39.87 1.75
4202 4572 9.225436 TGCTCACATTATTTATTTGTGTAGTGA 57.775 29.630 0.00 0.00 41.14 3.41
4203 4573 9.277565 GTGCTCACATTATTTATTTGTGTAGTG 57.722 33.333 0.00 0.00 41.14 2.74
4213 4587 6.058183 GGAGGACAGTGCTCACATTATTTAT 58.942 40.000 22.37 0.00 36.47 1.40
4431 4805 7.676947 ACACTGTAGAAAAGCTATTACCTTCA 58.323 34.615 0.00 0.00 0.00 3.02
4436 4810 7.321153 TGAGGACACTGTAGAAAAGCTATTAC 58.679 38.462 0.00 0.00 0.00 1.89
4481 4863 1.751927 GCTGCCATCCTGTGAAGGG 60.752 63.158 0.00 0.00 29.82 3.95
4688 5070 6.479972 TCGGTACTTGGAATTATCACATCT 57.520 37.500 0.00 0.00 0.00 2.90
4713 5095 5.779771 AGGCTGGATAAGAATTTCCACAAAA 59.220 36.000 0.00 0.00 37.10 2.44
4717 5099 4.273318 ACAGGCTGGATAAGAATTTCCAC 58.727 43.478 20.34 0.00 37.10 4.02
4723 5105 6.670695 AAAAACAACAGGCTGGATAAGAAT 57.329 33.333 20.34 0.00 0.00 2.40
4755 5139 7.749570 GCAGCAAATGTGATCATTATAAGCTAG 59.250 37.037 0.00 6.63 42.60 3.42
4765 5149 6.459670 TTATTCTGCAGCAAATGTGATCAT 57.540 33.333 9.47 0.00 35.59 2.45
4828 5212 5.111293 CAATTTGAATTACACCATGGCTCC 58.889 41.667 13.04 0.00 0.00 4.70
4918 5302 1.271926 ACCTGGAGGGGAATCAAAACG 60.272 52.381 0.00 0.00 40.27 3.60
4927 5311 3.498961 TTCTGCCACCTGGAGGGGA 62.499 63.158 12.30 7.64 42.67 4.81
4928 5312 2.935481 TTCTGCCACCTGGAGGGG 60.935 66.667 12.30 5.93 40.27 4.79
4934 5318 1.093159 GAATCAGCTTCTGCCACCTG 58.907 55.000 0.00 0.00 40.80 4.00
5118 5502 5.009631 TGGTCAACAATAGTTCCAAGATGG 58.990 41.667 0.00 0.00 39.43 3.51
5120 5504 5.630121 TGTGGTCAACAATAGTTCCAAGAT 58.370 37.500 0.00 0.00 34.52 2.40
5204 5588 3.489229 CCTCGATAGACTGTTCGCATTCA 60.489 47.826 5.12 0.00 42.67 2.57
5275 5659 7.158697 ACAAAATTTGGCCCATAAACTCTTAC 58.841 34.615 10.71 0.00 34.12 2.34
5334 5718 2.964740 TCTCGCCAAGATGAACAAGAG 58.035 47.619 0.00 0.00 0.00 2.85
5382 5766 9.965824 GAAAGACCATTTTGAGTTAGAAATGAA 57.034 29.630 9.64 0.00 42.85 2.57
5425 5809 3.889196 TGTGCCACAAACTTATCGAAC 57.111 42.857 0.00 0.00 0.00 3.95
5559 5943 1.897133 AGCAGATGAAATGCAAGGCAA 59.103 42.857 0.00 0.00 46.31 4.52
5562 5946 3.380320 TGATGAGCAGATGAAATGCAAGG 59.620 43.478 0.00 0.00 46.31 3.61
5576 5960 6.039047 GCAAAGGAATTAGAAGATGATGAGCA 59.961 38.462 0.00 0.00 0.00 4.26
5577 5961 6.262720 AGCAAAGGAATTAGAAGATGATGAGC 59.737 38.462 0.00 0.00 0.00 4.26
5578 5962 7.498239 TCAGCAAAGGAATTAGAAGATGATGAG 59.502 37.037 0.00 0.00 29.73 2.90
5579 5963 7.341030 TCAGCAAAGGAATTAGAAGATGATGA 58.659 34.615 0.00 0.00 30.49 2.92
5580 5964 7.563888 TCAGCAAAGGAATTAGAAGATGATG 57.436 36.000 0.00 0.00 0.00 3.07
5581 5965 7.833183 ACTTCAGCAAAGGAATTAGAAGATGAT 59.167 33.333 0.00 0.00 39.47 2.45
5582 5966 7.170965 ACTTCAGCAAAGGAATTAGAAGATGA 58.829 34.615 0.00 0.00 39.47 2.92
5583 5967 7.388460 ACTTCAGCAAAGGAATTAGAAGATG 57.612 36.000 0.00 0.00 39.47 2.90
5584 5968 7.094032 CCAACTTCAGCAAAGGAATTAGAAGAT 60.094 37.037 0.00 0.00 39.47 2.40
5585 5969 6.207417 CCAACTTCAGCAAAGGAATTAGAAGA 59.793 38.462 0.00 0.00 39.47 2.87
5586 5970 6.385033 CCAACTTCAGCAAAGGAATTAGAAG 58.615 40.000 0.00 0.00 39.47 2.85
5587 5971 5.278957 GCCAACTTCAGCAAAGGAATTAGAA 60.279 40.000 4.18 0.00 39.47 2.10
5588 5972 4.218417 GCCAACTTCAGCAAAGGAATTAGA 59.782 41.667 4.18 0.00 39.47 2.10
5589 5973 4.219288 AGCCAACTTCAGCAAAGGAATTAG 59.781 41.667 4.18 0.00 39.47 1.73
5590 5974 4.151883 AGCCAACTTCAGCAAAGGAATTA 58.848 39.130 4.18 0.00 39.47 1.40
5591 5975 2.967887 AGCCAACTTCAGCAAAGGAATT 59.032 40.909 4.18 0.00 39.47 2.17
5592 5976 2.560105 GAGCCAACTTCAGCAAAGGAAT 59.440 45.455 4.18 0.00 39.47 3.01
5593 5977 1.956477 GAGCCAACTTCAGCAAAGGAA 59.044 47.619 4.18 0.00 39.47 3.36
5594 5978 1.133823 TGAGCCAACTTCAGCAAAGGA 60.134 47.619 4.18 0.00 39.47 3.36
5595 5979 1.321474 TGAGCCAACTTCAGCAAAGG 58.679 50.000 4.18 0.00 39.47 3.11
5596 5980 3.655276 AATGAGCCAACTTCAGCAAAG 57.345 42.857 0.00 0.00 41.08 2.77
5597 5981 4.099881 AGAAAATGAGCCAACTTCAGCAAA 59.900 37.500 0.00 0.00 0.00 3.68
5598 5982 3.638160 AGAAAATGAGCCAACTTCAGCAA 59.362 39.130 0.00 0.00 0.00 3.91
5599 5983 3.225104 AGAAAATGAGCCAACTTCAGCA 58.775 40.909 0.00 0.00 0.00 4.41
5600 5984 3.930634 AGAAAATGAGCCAACTTCAGC 57.069 42.857 0.00 0.00 0.00 4.26
5601 5985 7.031975 GGAATTAGAAAATGAGCCAACTTCAG 58.968 38.462 0.00 0.00 0.00 3.02
5602 5986 6.721208 AGGAATTAGAAAATGAGCCAACTTCA 59.279 34.615 0.00 0.00 0.00 3.02
5603 5987 7.163001 AGGAATTAGAAAATGAGCCAACTTC 57.837 36.000 0.00 0.00 0.00 3.01
5604 5988 7.544804 AAGGAATTAGAAAATGAGCCAACTT 57.455 32.000 0.00 0.00 0.00 2.66
5605 5989 7.381323 CAAAGGAATTAGAAAATGAGCCAACT 58.619 34.615 0.00 0.00 0.00 3.16
5606 5990 6.091305 GCAAAGGAATTAGAAAATGAGCCAAC 59.909 38.462 0.00 0.00 0.00 3.77
5607 5991 6.014327 AGCAAAGGAATTAGAAAATGAGCCAA 60.014 34.615 0.00 0.00 0.00 4.52
5608 5992 5.481473 AGCAAAGGAATTAGAAAATGAGCCA 59.519 36.000 0.00 0.00 0.00 4.75
5609 5993 5.809051 CAGCAAAGGAATTAGAAAATGAGCC 59.191 40.000 0.00 0.00 0.00 4.70
5616 6000 8.006298 TGAAAGTTCAGCAAAGGAATTAGAAA 57.994 30.769 0.00 0.00 32.50 2.52
5680 6066 2.483745 CGTTCCGCTAGCTCGTCA 59.516 61.111 13.93 0.00 0.00 4.35
5718 6104 1.718757 GGCACGGCATCCAGAATCAC 61.719 60.000 0.00 0.00 0.00 3.06
5749 6135 3.895232 ACATCCTCTACAAATGCTCGT 57.105 42.857 0.00 0.00 0.00 4.18
5770 6156 0.322456 CCTGGCGGATTTCCTCAACA 60.322 55.000 0.00 0.00 0.00 3.33
5911 6297 3.946201 CGGCAGATAGGGCAGGGG 61.946 72.222 0.00 0.00 0.00 4.79
5912 6298 2.388890 CTTCGGCAGATAGGGCAGGG 62.389 65.000 0.00 0.00 0.00 4.45
5986 6372 0.179234 TCCAGTTGTTCTTGGCGTCA 59.821 50.000 0.00 0.00 0.00 4.35
6048 6434 3.798511 CCCCCTTCTTCCCGAGGC 61.799 72.222 0.00 0.00 0.00 4.70
6110 6496 1.137872 CTGGTTCAAGGGGATCTCGAG 59.862 57.143 5.93 5.93 0.00 4.04
6112 6498 1.195115 TCTGGTTCAAGGGGATCTCG 58.805 55.000 0.00 0.00 0.00 4.04
6220 6606 6.260936 ACAAGTAAATGAGCATACATACCAGC 59.739 38.462 0.00 0.00 0.00 4.85
6241 6627 8.807667 AAATGCTTCAAGAATTACTGAACAAG 57.192 30.769 0.00 0.00 0.00 3.16
6244 6630 8.694394 GTGAAAATGCTTCAAGAATTACTGAAC 58.306 33.333 0.00 0.00 0.00 3.18
6247 6633 8.697067 CAAGTGAAAATGCTTCAAGAATTACTG 58.303 33.333 0.00 0.00 0.00 2.74
6270 6679 4.785301 TCCAGGGATAAAAGATCAGCAAG 58.215 43.478 0.00 0.00 0.00 4.01
6297 6712 2.353889 GTGACATGAGCAGCACCTAATG 59.646 50.000 0.00 0.67 31.15 1.90
6311 6726 2.082231 CCTCCAGCTTTGAGTGACATG 58.918 52.381 8.75 0.00 0.00 3.21
6356 6771 5.512942 TTACCATGAGGAAGACATTGGAA 57.487 39.130 0.00 0.00 38.69 3.53
6387 6802 0.679505 GAGTGACACACAGGGTAGCA 59.320 55.000 8.59 0.00 36.74 3.49
6388 6803 0.037232 GGAGTGACACACAGGGTAGC 60.037 60.000 8.59 0.00 36.74 3.58
6389 6804 1.273606 CTGGAGTGACACACAGGGTAG 59.726 57.143 17.73 0.80 36.74 3.18
6404 6820 1.417890 AGTTCACTGGGTTCACTGGAG 59.582 52.381 0.00 0.00 0.00 3.86
6414 6830 3.004734 CCAAGCAAAAGTAGTTCACTGGG 59.995 47.826 0.00 0.00 37.63 4.45
6415 6831 3.632145 ACCAAGCAAAAGTAGTTCACTGG 59.368 43.478 0.00 0.00 37.63 4.00
6445 6862 4.019681 TCACAGATTTTACTACCACAGGGG 60.020 45.833 0.00 0.00 44.81 4.79
6446 6863 4.935808 GTCACAGATTTTACTACCACAGGG 59.064 45.833 0.00 0.00 41.29 4.45
6457 6874 9.349713 AGAACTTGGTTATTGTCACAGATTTTA 57.650 29.630 0.00 0.00 0.00 1.52
6460 6877 6.772716 ACAGAACTTGGTTATTGTCACAGATT 59.227 34.615 0.00 0.00 0.00 2.40
6463 6880 6.183360 ACAACAGAACTTGGTTATTGTCACAG 60.183 38.462 0.00 0.00 27.46 3.66
6466 6883 5.650266 ACACAACAGAACTTGGTTATTGTCA 59.350 36.000 0.00 0.00 29.71 3.58
6467 6884 5.971202 CACACAACAGAACTTGGTTATTGTC 59.029 40.000 0.00 0.00 29.71 3.18
6468 6885 5.417580 ACACACAACAGAACTTGGTTATTGT 59.582 36.000 0.00 0.00 31.17 2.71
6469 6886 5.890334 ACACACAACAGAACTTGGTTATTG 58.110 37.500 0.00 0.00 0.00 1.90
6487 6904 3.879295 CCATGGATCCTGTATCAACACAC 59.121 47.826 14.23 0.00 36.20 3.82
6493 6910 3.059051 TCCACCATGGATCCTGTATCA 57.941 47.619 21.47 0.00 42.67 2.15
6767 7188 3.462579 AGGGCCTGAAGCTACTACTACTA 59.537 47.826 4.50 0.00 43.05 1.82
6865 7419 0.542702 ATTGGAAGGGGGCACAACAG 60.543 55.000 0.00 0.00 0.00 3.16
6929 7484 6.750501 TCGAATTCAAGATAAACCACTAGACG 59.249 38.462 6.22 0.00 0.00 4.18
6968 7523 6.927381 AGCTCCTCATTTCAAACAAATTCTTG 59.073 34.615 0.00 0.00 38.61 3.02
7049 7609 9.787435 ACAGTGGAAGTTGTAATAATTCAAGTA 57.213 29.630 0.00 0.00 0.00 2.24
7050 7610 8.691661 ACAGTGGAAGTTGTAATAATTCAAGT 57.308 30.769 0.00 0.00 0.00 3.16
7051 7611 8.783093 TGACAGTGGAAGTTGTAATAATTCAAG 58.217 33.333 0.00 0.00 0.00 3.02
7052 7612 8.684386 TGACAGTGGAAGTTGTAATAATTCAA 57.316 30.769 0.00 0.00 0.00 2.69
7053 7613 8.154203 TCTGACAGTGGAAGTTGTAATAATTCA 58.846 33.333 1.59 0.00 0.00 2.57
7055 7615 7.119846 GCTCTGACAGTGGAAGTTGTAATAATT 59.880 37.037 1.59 0.00 0.00 1.40
7074 7635 3.717707 TGTGAACTTGTACAGCTCTGAC 58.282 45.455 3.60 0.00 0.00 3.51
7078 7639 4.991056 TGAATCTGTGAACTTGTACAGCTC 59.009 41.667 0.00 0.00 43.02 4.09
7092 7653 1.337071 GCCTGCATCCATGAATCTGTG 59.663 52.381 0.00 0.00 0.00 3.66
7249 7839 2.436109 GGGTGACATGGCACTGGT 59.564 61.111 30.13 0.00 38.78 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.