AutoCloner

Multiple sequence alignment - TraesCS2A01G072300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G072300	chr2A	100.000	2542	0	0	1	2542	32101769	32099228	0.000000e+00	4695.0
1	TraesCS2A01G072300	chr2A	91.179	1315	84	16	776	2088	32017859	32016575	0.000000e+00	1757.0
2	TraesCS2A01G072300	chr2A	95.425	765	33	2	1329	2092	32026531	32025768	0.000000e+00	1218.0
3	TraesCS2A01G072300	chr2A	94.760	668	33	1	25	690	32094366	32093699	0.000000e+00	1038.0
4	TraesCS2A01G072300	chr2A	95.238	630	28	2	1291	1918	32092998	32092369	0.000000e+00	996.0
5	TraesCS2A01G072300	chr2A	91.508	683	27	15	987	1669	32018521	32017870	0.000000e+00	911.0
6	TraesCS2A01G072300	chr2A	96.042	480	15	3	808	1285	32026994	32026517	0.000000e+00	778.0
7	TraesCS2A01G072300	chr2A	96.963	461	12	1	806	1264	32093674	32093214	0.000000e+00	773.0
8	TraesCS2A01G072300	chr2A	93.684	475	30	0	189	663	32027520	32027046	0.000000e+00	712.0
9	TraesCS2A01G072300	chr2A	90.465	409	31	4	2140	2542	32025783	32025377	1.340000e-147	532.0
10	TraesCS2A01G072300	chr2A	89.976	409	35	3	2140	2542	32067417	32067009	8.060000e-145	523.0
11	TraesCS2A01G072300	chr2A	91.971	137	10	1	2407	2542	32031714	32031578	9.280000e-45	191.0
12	TraesCS2A01G072300	chr2A	90.909	132	10	1	2407	2536	32024086	32023955	2.600000e-40	176.0
13	TraesCS2A01G072300	chr2A	92.683	82	4	2	2408	2489	18460747	18460668	1.600000e-22	117.0
14	TraesCS2A01G072300	chr2A	97.917	48	1	0	2093	2140	42790542	42790589	1.620000e-12	84.2
15	TraesCS2A01G072300	chr2A	97.917	48	1	0	2093	2140	42838869	42838916	1.620000e-12	84.2
16	TraesCS2A01G072300	chr2A	97.917	48	1	0	2093	2140	42875783	42875830	1.620000e-12	84.2
17	TraesCS2A01G072300	chr2A	97.917	48	1	0	2093	2140	42932161	42932208	1.620000e-12	84.2
18	TraesCS2A01G072300	chr2A	97.917	48	1	0	2093	2140	42962177	42962224	1.620000e-12	84.2
19	TraesCS2A01G072300	chr2B	92.717	2046	137	5	57	2092	48305450	48303407	0.000000e+00	2942.0
20	TraesCS2A01G072300	chr2B	92.480	1968	116	20	25	1989	49284958	49286896	0.000000e+00	2785.0
21	TraesCS2A01G072300	chr2B	90.691	2041	158	16	55	2092	48181531	48179520	0.000000e+00	2687.0
22	TraesCS2A01G072300	chr2B	91.786	1948	127	16	55	2000	48216863	48214947	0.000000e+00	2680.0
23	TraesCS2A01G072300	chr2B	93.189	1248	81	3	30	1274	48149088	48147842	0.000000e+00	1831.0
24	TraesCS2A01G072300	chr2B	85.821	268	25	4	2140	2407	48303422	48303168	3.220000e-69	272.0
25	TraesCS2A01G072300	chr2B	80.588	170	23	5	2140	2301	49117155	49117322	3.430000e-24	122.0
26	TraesCS2A01G072300	chr2B	94.231	52	3	0	2089	2140	66418553	66418604	2.100000e-11	80.5
27	TraesCS2A01G072300	chr2B	95.745	47	0	2	2105	2149	348142159	348142205	9.750000e-10	75.0
28	TraesCS2A01G072300	chr2D	91.527	1971	106	23	25	1991	29886061	29884148	0.000000e+00	2658.0
29	TraesCS2A01G072300	chr2D	91.500	800	65	3	1293	2092	30238074	30237278	0.000000e+00	1098.0
30	TraesCS2A01G072300	chr2D	91.000	800	69	3	1293	2092	30166064	30165268	0.000000e+00	1075.0
31	TraesCS2A01G072300	chr2D	91.228	456	38	2	56	511	30098010	30097557	9.990000e-174	619.0
32	TraesCS2A01G072300	chr2D	87.591	274	28	4	2140	2407	30047657	30047384	1.900000e-81	313.0
33	TraesCS2A01G072300	chr2D	91.573	178	13	2	2230	2406	29884122	29883946	7.020000e-61	244.0
34	TraesCS2A01G072300	chr2D	80.364	275	44	5	2140	2407	30096050	30095779	1.540000e-47	200.0
35	TraesCS2A01G072300	chr2D	80.364	275	42	7	2140	2407	30237293	30237024	5.550000e-47	198.0
36	TraesCS2A01G072300	chr2D	79.636	275	44	6	2140	2407	30121435	30121166	1.200000e-43	187.0
37	TraesCS2A01G072300	chr2D	97.917	48	1	0	2093	2140	37959863	37959910	1.620000e-12	84.2
38	TraesCS2A01G072300	chr2D	97.917	48	1	0	2093	2140	37986514	37986561	1.620000e-12	84.2
39	TraesCS2A01G072300	chr2D	94.231	52	3	0	2089	2140	37950424	37950475	2.100000e-11	80.5
40	TraesCS2A01G072300	chr2D	93.478	46	2	1	1	46	559597010	559597054	1.630000e-07	67.6
41	TraesCS2A01G072300	chr2D	95.122	41	1	1	1	40	428138499	428138539	2.110000e-06	63.9
42	TraesCS2A01G072300	chrUn	88.195	2050	155	36	56	2092	311530785	311532760	0.000000e+00	2364.0
43	TraesCS2A01G072300	chrUn	88.474	1232	86	17	56	1274	338699827	338698639	0.000000e+00	1437.0
44	TraesCS2A01G072300	chrUn	91.125	800	67	4	1293	2092	295794973	295795768	0.000000e+00	1081.0
45	TraesCS2A01G072300	chrUn	90.920	804	72	1	1289	2092	335401465	335400663	0.000000e+00	1079.0
46	TraesCS2A01G072300	chrUn	80.727	275	45	4	2140	2407	379450014	379449741	9.220000e-50	207.0
47	TraesCS2A01G072300	chrUn	79.636	275	44	7	2140	2407	295795753	295796022	1.200000e-43	187.0
48	TraesCS2A01G072300	chr5B	95.833	48	2	0	2097	2144	592345005	592345052	7.540000e-11	78.7
49	TraesCS2A01G072300	chr7B	95.556	45	1	1	1	45	448213037	448213080	1.260000e-08	71.3
50	TraesCS2A01G072300	chr5A	95.455	44	1	1	2101	2144	384354609	384354567	4.540000e-08	69.4
51	TraesCS2A01G072300	chr6A	95.238	42	0	2	1	40	518910715	518910756	5.870000e-07	65.8
52	TraesCS2A01G072300	chr5D	93.333	45	2	1	1	45	190703919	190703876	5.870000e-07	65.8
53	TraesCS2A01G072300	chr7A	91.667	48	0	2	1	47	268084258	268084214	2.110000e-06	63.9
54	TraesCS2A01G072300	chr3A	90.196	51	0	5	1	49	110372717	110372670	7.590000e-06	62.1
55	TraesCS2A01G072300	chr3D	91.111	45	2	2	1	43	60544717	60544761	2.730000e-05	60.2
56	TraesCS2A01G072300	chr3D	89.362	47	3	2	1	45	429056735	429056689	9.820000e-05	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G072300	chr2A	32099228	32101769	2541	True	4695.000000	4695	100.000000	1	2542	1	chr2A.!!$R4	2541
1	TraesCS2A01G072300	chr2A	32016575	32018521	1946	True	1334.000000	1757	91.343500	776	2088	2	chr2A.!!$R5	1312
2	TraesCS2A01G072300	chr2A	32092369	32094366	1997	True	935.666667	1038	95.653667	25	1918	3	chr2A.!!$R7	1893
3	TraesCS2A01G072300	chr2A	32023955	32027520	3565	True	683.200000	1218	93.305000	189	2542	5	chr2A.!!$R6	2353
4	TraesCS2A01G072300	chr2B	49284958	49286896	1938	False	2785.000000	2785	92.480000	25	1989	1	chr2B.!!$F2	1964
5	TraesCS2A01G072300	chr2B	48179520	48181531	2011	True	2687.000000	2687	90.691000	55	2092	1	chr2B.!!$R2	2037
6	TraesCS2A01G072300	chr2B	48214947	48216863	1916	True	2680.000000	2680	91.786000	55	2000	1	chr2B.!!$R3	1945
7	TraesCS2A01G072300	chr2B	48147842	48149088	1246	True	1831.000000	1831	93.189000	30	1274	1	chr2B.!!$R1	1244
8	TraesCS2A01G072300	chr2B	48303168	48305450	2282	True	1607.000000	2942	89.269000	57	2407	2	chr2B.!!$R4	2350
9	TraesCS2A01G072300	chr2D	29883946	29886061	2115	True	1451.000000	2658	91.550000	25	2406	2	chr2D.!!$R4	2381
10	TraesCS2A01G072300	chr2D	30165268	30166064	796	True	1075.000000	1075	91.000000	1293	2092	1	chr2D.!!$R3	799
11	TraesCS2A01G072300	chr2D	30237024	30238074	1050	True	648.000000	1098	85.932000	1293	2407	2	chr2D.!!$R6	1114
12	TraesCS2A01G072300	chr2D	30095779	30098010	2231	True	409.500000	619	85.796000	56	2407	2	chr2D.!!$R5	2351
13	TraesCS2A01G072300	chrUn	311530785	311532760	1975	False	2364.000000	2364	88.195000	56	2092	1	chrUn.!!$F1	2036
14	TraesCS2A01G072300	chrUn	338698639	338699827	1188	True	1437.000000	1437	88.474000	56	1274	1	chrUn.!!$R2	1218
15	TraesCS2A01G072300	chrUn	335400663	335401465	802	True	1079.000000	1079	90.920000	1289	2092	1	chrUn.!!$R1	803
16	TraesCS2A01G072300	chrUn	295794973	295796022	1049	False	634.000000	1081	85.380500	1293	2407	2	chrUn.!!$F2	1114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
379	380	0.998928	TACCAGCACCCAATCACCAT	59.001	50.0	0.0	0.0	0.0	3.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2115	2399	0.392998	GCAGCAAGCCTGGTAAGCTA	60.393	55.0	8.22	0.0	40.49	3.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
211	212	5.423704	TGGGGACACGACTCATTAATAAA	57.576	39.130	0.00	0.00	33.40	1.40
317	318	2.515429	AGATAGGTTGTCCATTGGCCAT	59.485	45.455	6.09	0.00	35.89	4.40
379	380	0.998928	TACCAGCACCCAATCACCAT	59.001	50.000	0.00	0.00	0.00	3.55
431	432	3.906218	CCAATCTCCTCCATCACCATCTA	59.094	47.826	0.00	0.00	0.00	1.98
480	482	6.147656	CCATTATTTGTTTTCCTGCCTTGTTC	59.852	38.462	0.00	0.00	0.00	3.18
543	576	2.171659	TCTGGTGCTTTTAGTGTCCACA	59.828	45.455	0.00	0.00	0.00	4.17
562	595	6.375455	GTCCACACTTTACATCCATGAGAATT	59.625	38.462	0.00	0.00	0.00	2.17
641	677	9.941664	CTGTTAATCAATATCTTCATGGTTGTC	57.058	33.333	0.00	0.00	0.00	3.18
642	678	9.460019	TGTTAATCAATATCTTCATGGTTGTCA	57.540	29.630	0.00	0.00	0.00	3.58
774	812	6.380846	TCATAGAAAAAGGAATGAACATGGGG	59.619	38.462	0.00	0.00	0.00	4.96
866	916	8.978564	TTCATTGTGTTATGCGATGTTTAAAT	57.021	26.923	0.00	0.00	0.00	1.40
1506	1789	2.105477	GCTCTTGGCCCTATCATTCAGA	59.895	50.000	0.00	0.00	34.27	3.27
1517	1800	5.996513	CCCTATCATTCAGAAGGTCATCAAG	59.003	44.000	0.00	0.00	0.00	3.02
1663	1947	7.675478	TGTATCATTTGATTTCGAGAACTTCG	58.325	34.615	0.00	0.00	41.88	3.79
1728	2012	9.800433	GCCTATGATATATTGGATCGATATGAG	57.200	37.037	0.00	2.21	0.00	2.90
1765	2049	0.827507	TTTGGCCAAGGCTTCTCACC	60.828	55.000	19.48	0.00	41.60	4.02
1909	2193	9.702726	CAATTAATGACCGCTATTATTAATCCG	57.297	33.333	0.00	0.00	35.68	4.18
1913	2197	5.466819	TGACCGCTATTATTAATCCGTCAG	58.533	41.667	0.00	0.00	0.00	3.51
2055	2339	0.813184	CGGATTGCAGCAAGGTTCAT	59.187	50.000	14.47	0.00	0.00	2.57
2092	2376	8.547967	TCGAAATCCTAGCATTTATGGTATTC	57.452	34.615	0.00	3.50	39.69	1.75
2093	2377	8.375506	TCGAAATCCTAGCATTTATGGTATTCT	58.624	33.333	0.00	0.00	39.69	2.40
2094	2378	8.446273	CGAAATCCTAGCATTTATGGTATTCTG	58.554	37.037	0.00	0.00	39.69	3.02
2095	2379	7.693969	AATCCTAGCATTTATGGTATTCTGC	57.306	36.000	2.44	0.00	39.69	4.26
2096	2380	6.439636	TCCTAGCATTTATGGTATTCTGCT	57.560	37.500	2.44	0.00	39.69	4.24
2097	2381	6.233434	TCCTAGCATTTATGGTATTCTGCTG	58.767	40.000	5.18	0.00	40.01	4.41
2098	2382	5.413833	CCTAGCATTTATGGTATTCTGCTGG	59.586	44.000	5.18	2.27	40.01	4.85
2099	2383	3.571401	AGCATTTATGGTATTCTGCTGGC	59.429	43.478	0.00	0.00	38.45	4.85
2100	2384	3.571401	GCATTTATGGTATTCTGCTGGCT	59.429	43.478	0.00	0.00	0.00	4.75
2101	2385	4.558095	GCATTTATGGTATTCTGCTGGCTG	60.558	45.833	0.00	0.00	0.00	4.85
2102	2386	3.931907	TTATGGTATTCTGCTGGCTGT	57.068	42.857	0.00	0.00	0.00	4.40
2103	2387	2.814805	ATGGTATTCTGCTGGCTGTT	57.185	45.000	0.00	0.00	0.00	3.16
2104	2388	1.825090	TGGTATTCTGCTGGCTGTTG	58.175	50.000	0.00	0.00	0.00	3.33
2105	2389	1.073763	TGGTATTCTGCTGGCTGTTGT	59.926	47.619	0.00	0.00	0.00	3.32
2106	2390	2.162681	GGTATTCTGCTGGCTGTTGTT	58.837	47.619	0.00	0.00	0.00	2.83
2107	2391	2.558359	GGTATTCTGCTGGCTGTTGTTT	59.442	45.455	0.00	0.00	0.00	2.83
2108	2392	3.005791	GGTATTCTGCTGGCTGTTGTTTT	59.994	43.478	0.00	0.00	0.00	2.43
2109	2393	3.825143	ATTCTGCTGGCTGTTGTTTTT	57.175	38.095	0.00	0.00	0.00	1.94
2128	2412	4.844349	TTTTGAGATAGCTTACCAGGCT	57.156	40.909	0.00	0.00	43.02	4.58
2129	2413	4.844349	TTTGAGATAGCTTACCAGGCTT	57.156	40.909	0.00	0.00	40.74	4.35
2130	2414	3.827008	TGAGATAGCTTACCAGGCTTG	57.173	47.619	0.00	0.00	40.74	4.01
2131	2415	2.158900	TGAGATAGCTTACCAGGCTTGC	60.159	50.000	0.00	0.00	40.74	4.01
2132	2416	2.103941	GAGATAGCTTACCAGGCTTGCT	59.896	50.000	0.00	6.04	40.74	3.91
2133	2417	2.158842	AGATAGCTTACCAGGCTTGCTG	60.159	50.000	10.05	0.00	40.74	4.41
2134	2418	0.392998	TAGCTTACCAGGCTTGCTGC	60.393	55.000	10.05	0.00	40.74	5.25
2148	2432	2.734755	TGCTGCCTGGTAGCATTTAT	57.265	45.000	31.66	0.00	45.44	1.40
2149	2433	2.300433	TGCTGCCTGGTAGCATTTATG	58.700	47.619	31.66	0.00	45.44	1.90
2150	2434	1.610522	GCTGCCTGGTAGCATTTATGG	59.389	52.381	28.64	0.00	43.09	2.74
2151	2435	2.936202	CTGCCTGGTAGCATTTATGGT	58.064	47.619	0.00	0.00	43.09	3.55
2152	2436	3.747388	GCTGCCTGGTAGCATTTATGGTA	60.747	47.826	28.64	0.00	43.09	3.25
2153	2437	4.655963	CTGCCTGGTAGCATTTATGGTAT	58.344	43.478	0.00	0.00	43.09	2.73
2154	2438	5.060427	TGCCTGGTAGCATTTATGGTATT	57.940	39.130	5.08	0.00	42.02	1.89
2155	2439	6.194285	TGCCTGGTAGCATTTATGGTATTA	57.806	37.500	5.08	0.00	42.02	0.98
2156	2440	6.001460	TGCCTGGTAGCATTTATGGTATTAC	58.999	40.000	5.08	0.00	42.02	1.89
2157	2441	5.414765	GCCTGGTAGCATTTATGGTATTACC	59.585	44.000	5.87	5.87	42.02	2.85
2158	2442	6.747186	GCCTGGTAGCATTTATGGTATTACCT	60.747	42.308	13.90	2.81	42.02	3.08
2203	2487	0.032403	TTGCAACATCAGCAAGCACC	59.968	50.000	0.00	0.00	46.13	5.01
2204	2488	1.108132	TGCAACATCAGCAAGCACCA	61.108	50.000	0.00	0.00	39.39	4.17
2205	2489	0.032403	GCAACATCAGCAAGCACCAA	59.968	50.000	0.00	0.00	0.00	3.67
2206	2490	1.933500	GCAACATCAGCAAGCACCAAG	60.934	52.381	0.00	0.00	0.00	3.61
2207	2491	0.316204	AACATCAGCAAGCACCAAGC	59.684	50.000	0.00	0.00	46.19	4.01
2300	2599	4.950205	TGAGGTTTTCGAAGGAAGTACT	57.050	40.909	0.00	0.00	32.80	2.73
2307	2606	3.436577	TCGAAGGAAGTACTGAGGAGT	57.563	47.619	0.00	0.00	36.07	3.85
2369	2670	3.550820	CCATACATCCAATCGGGTTCAA	58.449	45.455	0.00	0.00	38.11	2.69
2378	2679	2.393271	ATCGGGTTCAAGCAGAAGAG	57.607	50.000	0.00	0.00	36.78	2.85
2388	2689	0.543883	AGCAGAAGAGAGAGGGCACA	60.544	55.000	0.00	0.00	0.00	4.57
2423	2724	7.495934	GCATATACGATGTAGGAAATAAGCCAT	59.504	37.037	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	4.371855	GAGACATGTGATACGTCTCCAA	57.628	45.455	1.15	0.00	46.48	3.53
15	16	4.783764	TTGTGAGACATGTGATACGTCT	57.216	40.909	1.15	0.00	42.58	4.18
17	18	7.899178	TTATTTTGTGAGACATGTGATACGT	57.101	32.000	1.15	0.00	0.00	3.57
18	19	9.773328	ATTTTATTTTGTGAGACATGTGATACG	57.227	29.630	1.15	0.00	0.00	3.06
178	179	5.751586	AGTCGTGTCCCCACATAAATATTT	58.248	37.500	5.89	5.89	41.93	1.40
379	380	7.571732	TCTTCCTACTCTTCCCACTAGATAGTA	59.428	40.741	0.00	0.00	34.13	1.82
480	482	1.875576	GCACCAGAAGCCCGATGATAG	60.876	57.143	0.00	0.00	0.00	2.08
543	576	9.401058	CCTCTAAAATTCTCATGGATGTAAAGT	57.599	33.333	0.00	0.00	0.00	2.66
562	595	9.976776	CTATACTGGTATAGATCCACCTCTAAA	57.023	37.037	17.96	0.00	44.80	1.85
641	677	5.706833	TGCATATAGATGGGTGCTAACAATG	59.293	40.000	0.00	0.00	38.37	2.82
642	678	5.879763	TGCATATAGATGGGTGCTAACAAT	58.120	37.500	0.00	0.00	38.37	2.71
747	785	7.924412	CCCATGTTCATTCCTTTTTCTATGATG	59.076	37.037	0.00	0.00	0.00	3.07
774	812	3.220507	TGTGCTATGCATGCAAAGTTC	57.779	42.857	26.68	15.36	41.91	3.01
839	879	8.978564	TTAAACATCGCATAACACAATGAAAT	57.021	26.923	0.00	0.00	0.00	2.17
927	979	3.243168	CGCATGCCATATTTGTACTTGCT	60.243	43.478	13.15	0.00	31.48	3.91
936	988	2.585330	TGATCCACGCATGCCATATTT	58.415	42.857	13.15	0.00	0.00	1.40
1506	1789	7.390162	GTCATTCTTCTTCTTCTTGATGACCTT	59.610	37.037	0.00	0.00	31.38	3.50
1517	1800	6.257630	GCTAGACCATGTCATTCTTCTTCTTC	59.742	42.308	0.00	0.00	34.60	2.87
1663	1947	7.141363	GGATAATGATGTCTTGCCATTAACAC	58.859	38.462	0.00	0.00	36.65	3.32
1728	2012	5.393135	GGCCAAAAACAGAAAGACCTATAGC	60.393	44.000	0.00	0.00	0.00	2.97
1765	2049	4.336433	ACTCACAACATGAAACCTGAGTTG	59.664	41.667	0.00	0.00	43.71	3.16
1944	2228	1.980765	GACATGGCAGAGATATGGGGA	59.019	52.381	0.00	0.00	0.00	4.81
2055	2339	5.245526	GCTAGGATTTCGAATAAGGGGTCTA	59.754	44.000	0.00	0.00	0.00	2.59
2106	2390	5.179452	AGCCTGGTAAGCTATCTCAAAAA	57.821	39.130	0.00	0.00	39.29	1.94
2107	2391	4.844349	AGCCTGGTAAGCTATCTCAAAA	57.156	40.909	0.00	0.00	39.29	2.44
2108	2392	4.517285	CAAGCCTGGTAAGCTATCTCAAA	58.483	43.478	0.00	0.00	40.49	2.69
2109	2393	3.682718	GCAAGCCTGGTAAGCTATCTCAA	60.683	47.826	0.00	0.00	40.49	3.02
2110	2394	2.158900	GCAAGCCTGGTAAGCTATCTCA	60.159	50.000	0.00	0.00	40.49	3.27
2111	2395	2.103941	AGCAAGCCTGGTAAGCTATCTC	59.896	50.000	7.04	0.00	40.49	2.75
2112	2396	2.122768	AGCAAGCCTGGTAAGCTATCT	58.877	47.619	7.04	0.00	40.49	1.98
2113	2397	2.216898	CAGCAAGCCTGGTAAGCTATC	58.783	52.381	8.22	0.00	40.49	2.08
2114	2398	1.748591	GCAGCAAGCCTGGTAAGCTAT	60.749	52.381	8.22	0.00	40.49	2.97
2115	2399	0.392998	GCAGCAAGCCTGGTAAGCTA	60.393	55.000	8.22	0.00	40.49	3.32
2116	2400	1.676967	GCAGCAAGCCTGGTAAGCT	60.677	57.895	0.00	0.00	44.19	3.74
2117	2401	2.880648	GCAGCAAGCCTGGTAAGC	59.119	61.111	0.00	0.00	42.03	3.09
2126	2410	2.360350	TGCTACCAGGCAGCAAGC	60.360	61.111	12.45	1.84	45.71	4.01
2130	2414	1.610522	CCATAAATGCTACCAGGCAGC	59.389	52.381	4.45	4.45	45.75	5.25
2131	2415	2.936202	ACCATAAATGCTACCAGGCAG	58.064	47.619	0.00	0.00	45.75	4.85
2132	2416	4.722526	ATACCATAAATGCTACCAGGCA	57.277	40.909	0.00	0.00	46.63	4.75
2133	2417	5.414765	GGTAATACCATAAATGCTACCAGGC	59.585	44.000	4.24	0.00	38.42	4.85
2134	2418	6.779860	AGGTAATACCATAAATGCTACCAGG	58.220	40.000	12.54	0.00	41.95	4.45
2135	2419	7.450074	TGAGGTAATACCATAAATGCTACCAG	58.550	38.462	12.54	0.00	41.95	4.00
2136	2420	7.381789	TGAGGTAATACCATAAATGCTACCA	57.618	36.000	12.54	0.00	41.95	3.25
2137	2421	8.863872	AATGAGGTAATACCATAAATGCTACC	57.136	34.615	12.54	0.00	41.95	3.18
2145	2429	9.509956	CGGGAAATAAATGAGGTAATACCATAA	57.490	33.333	12.54	0.00	41.95	1.90
2146	2430	8.882282	TCGGGAAATAAATGAGGTAATACCATA	58.118	33.333	12.54	0.03	41.95	2.74
2147	2431	7.664318	GTCGGGAAATAAATGAGGTAATACCAT	59.336	37.037	12.54	0.00	41.95	3.55
2148	2432	6.993902	GTCGGGAAATAAATGAGGTAATACCA	59.006	38.462	12.54	0.00	41.95	3.25
2149	2433	6.429078	GGTCGGGAAATAAATGAGGTAATACC	59.571	42.308	0.07	0.07	38.99	2.73
2150	2434	7.222161	AGGTCGGGAAATAAATGAGGTAATAC	58.778	38.462	0.00	0.00	0.00	1.89
2151	2435	7.383156	AGGTCGGGAAATAAATGAGGTAATA	57.617	36.000	0.00	0.00	0.00	0.98
2152	2436	6.262056	AGGTCGGGAAATAAATGAGGTAAT	57.738	37.500	0.00	0.00	0.00	1.89
2153	2437	5.703730	AGGTCGGGAAATAAATGAGGTAA	57.296	39.130	0.00	0.00	0.00	2.85
2154	2438	5.703730	AAGGTCGGGAAATAAATGAGGTA	57.296	39.130	0.00	0.00	0.00	3.08
2155	2439	4.586306	AAGGTCGGGAAATAAATGAGGT	57.414	40.909	0.00	0.00	0.00	3.85
2156	2440	5.193679	AGAAAGGTCGGGAAATAAATGAGG	58.806	41.667	0.00	0.00	0.00	3.86
2157	2441	5.297029	GGAGAAAGGTCGGGAAATAAATGAG	59.703	44.000	0.00	0.00	0.00	2.90
2158	2442	5.045140	AGGAGAAAGGTCGGGAAATAAATGA	60.045	40.000	0.00	0.00	0.00	2.57
2203	2487	3.645884	CCAAATGTCAGGTTTCTGCTTG	58.354	45.455	0.00	0.00	40.69	4.01
2204	2488	2.036346	GCCAAATGTCAGGTTTCTGCTT	59.964	45.455	0.00	0.00	40.69	3.91
2205	2489	1.615392	GCCAAATGTCAGGTTTCTGCT	59.385	47.619	0.00	0.00	40.69	4.24
2206	2490	1.615392	AGCCAAATGTCAGGTTTCTGC	59.385	47.619	0.00	0.00	40.69	4.26
2207	2491	3.152341	AGAGCCAAATGTCAGGTTTCTG	58.848	45.455	0.00	0.00	42.21	3.02
2208	2492	3.515602	AGAGCCAAATGTCAGGTTTCT	57.484	42.857	0.00	0.00	0.00	2.52
2209	2493	3.127721	GCTAGAGCCAAATGTCAGGTTTC	59.872	47.826	0.00	0.00	34.31	2.78
2300	2599	2.300152	GGAGATGACACAACACTCCTCA	59.700	50.000	0.00	0.00	42.41	3.86
2307	2606	3.901222	TGGAAGTAGGAGATGACACAACA	59.099	43.478	0.00	0.00	0.00	3.33
2369	2670	0.543883	TGTGCCCTCTCTCTTCTGCT	60.544	55.000	0.00	0.00	0.00	4.24
2378	2679	2.894387	GCTCGCATGTGCCCTCTC	60.894	66.667	0.00	0.00	37.91	3.20
2439	2740	4.312231	ATGCACACACACGCGCAC	62.312	61.111	5.73	0.00	37.17	5.34
2444	2745	4.016629	AGCGCATGCACACACACG	62.017	61.111	19.57	0.00	46.23	4.49
2502	2803	3.567478	CTACACTCGGGCACGCACA	62.567	63.158	1.67	0.00	40.69	4.57
2503	2804	2.809601	CTACACTCGGGCACGCAC	60.810	66.667	1.67	0.00	40.69	5.34
2504	2805	4.063967	CCTACACTCGGGCACGCA	62.064	66.667	1.67	0.00	40.69	5.24
2513	2814	1.800586	CACACATGCACACCTACACTC	59.199	52.381	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.