Multiple sequence alignment - TraesCS2A01G072200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G072200 chr2A 100.000 2733 0 0 1 2733 32094477 32091745 0.000000e+00 5048
1 TraesCS2A01G072200 chr2A 95.363 992 36 7 276 1264 32027520 32026536 0.000000e+00 1568
2 TraesCS2A01G072200 chr2A 97.436 624 16 0 2110 2733 120360187 120360810 0.000000e+00 1064
3 TraesCS2A01G072200 chr2A 94.760 668 33 1 112 779 32101745 32101080 0.000000e+00 1038
4 TraesCS2A01G072200 chr2A 95.238 630 28 2 1480 2109 32100479 32099852 0.000000e+00 996
5 TraesCS2A01G072200 chr2A 96.949 590 18 0 1520 2109 32026531 32025942 0.000000e+00 990
6 TraesCS2A01G072200 chr2A 91.069 627 54 2 1482 2107 32017372 32016747 0.000000e+00 846
7 TraesCS2A01G072200 chr2A 96.963 461 12 1 804 1264 32100964 32100506 0.000000e+00 773
8 TraesCS2A01G072200 chr2A 93.492 461 28 1 804 1264 32017829 32017371 0.000000e+00 684
9 TraesCS2A01G072200 chr2B 93.188 778 46 4 2 779 49284852 49285622 0.000000e+00 1136
10 TraesCS2A01G072200 chr2B 92.031 778 54 3 2 779 48149197 48148428 0.000000e+00 1086
11 TraesCS2A01G072200 chr2B 93.574 638 39 1 142 779 48216863 48216228 0.000000e+00 950
12 TraesCS2A01G072200 chr2B 92.767 636 44 1 144 779 48305450 48304817 0.000000e+00 918
13 TraesCS2A01G072200 chr2B 93.387 620 40 1 1491 2109 49286206 49286825 0.000000e+00 917
14 TraesCS2A01G072200 chr2B 92.332 639 46 2 142 779 48181531 48180895 0.000000e+00 905
15 TraesCS2A01G072200 chr2B 92.235 631 46 3 1480 2109 48215657 48215029 0.000000e+00 891
16 TraesCS2A01G072200 chr2B 91.785 633 48 3 1480 2109 48304212 48303581 0.000000e+00 878
17 TraesCS2A01G072200 chr2B 90.174 631 60 2 1480 2109 48180323 48179694 0.000000e+00 821
18 TraesCS2A01G072200 chr2B 94.989 459 22 1 804 1261 49285738 49286196 0.000000e+00 719
19 TraesCS2A01G072200 chr2B 94.360 461 26 0 804 1264 48216114 48215654 0.000000e+00 708
20 TraesCS2A01G072200 chr2B 94.530 457 24 1 809 1264 48148308 48147852 0.000000e+00 704
21 TraesCS2A01G072200 chr2B 93.926 461 28 0 804 1264 48304703 48304243 0.000000e+00 697
22 TraesCS2A01G072200 chr2B 93.059 461 32 0 804 1264 48180780 48180320 0.000000e+00 675
23 TraesCS2A01G072200 chr2B 93.617 235 14 1 1259 1492 363689826 363689592 1.560000e-92 350
24 TraesCS2A01G072200 chr7A 97.444 626 15 1 2108 2733 424884109 424884733 0.000000e+00 1066
25 TraesCS2A01G072200 chr7A 96.840 633 19 1 2098 2730 484154688 484155319 0.000000e+00 1057
26 TraesCS2A01G072200 chr6A 97.436 624 16 0 2110 2733 430848124 430848747 0.000000e+00 1064
27 TraesCS2A01G072200 chr6A 97.284 626 17 0 2108 2733 555676461 555677086 0.000000e+00 1062
28 TraesCS2A01G072200 chr3A 97.432 623 16 0 2111 2733 176539837 176539215 0.000000e+00 1062
29 TraesCS2A01G072200 chr5A 97.129 627 18 0 2107 2733 521880087 521880713 0.000000e+00 1059
30 TraesCS2A01G072200 chr1A 97.276 624 17 0 2110 2733 62291270 62291893 0.000000e+00 1059
31 TraesCS2A01G072200 chr1A 96.557 639 19 2 2098 2733 377458938 377459576 0.000000e+00 1055
32 TraesCS2A01G072200 chr2D 90.103 778 46 1 2 779 29886171 29885425 0.000000e+00 981
33 TraesCS2A01G072200 chr2D 93.710 620 38 1 1491 2109 29884840 29884221 0.000000e+00 928
34 TraesCS2A01G072200 chr2D 90.190 632 55 6 1478 2109 30238076 30237452 0.000000e+00 817
35 TraesCS2A01G072200 chr2D 95.887 462 18 1 804 1264 29885308 29884847 0.000000e+00 747
36 TraesCS2A01G072200 chr2D 91.667 456 36 2 143 598 30098010 30097557 4.970000e-177 630
37 TraesCS2A01G072200 chr2D 93.562 233 15 0 1260 1492 2039332 2039100 5.600000e-92 348
38 TraesCS2A01G072200 chrUn 86.970 637 47 8 143 779 311530785 311531385 0.000000e+00 684
39 TraesCS2A01G072200 chr7B 94.043 235 14 0 1259 1493 92339290 92339524 9.310000e-95 357
40 TraesCS2A01G072200 chr7B 93.617 235 13 2 1259 1492 307160886 307161119 1.560000e-92 350
41 TraesCS2A01G072200 chr7B 93.590 234 14 1 1260 1492 222698116 222697883 5.600000e-92 348
42 TraesCS2A01G072200 chr4B 94.017 234 14 0 1259 1492 132642105 132642338 3.350000e-94 355
43 TraesCS2A01G072200 chr3B 94.043 235 13 1 1259 1492 283755558 283755324 3.350000e-94 355
44 TraesCS2A01G072200 chr3B 93.966 232 14 0 1259 1490 744581708 744581477 4.330000e-93 351
45 TraesCS2A01G072200 chr3B 93.590 234 13 2 1260 1492 812686102 812685870 5.600000e-92 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G072200 chr2A 32091745 32094477 2732 True 5048.000000 5048 100.000000 1 2733 1 chr2A.!!$R1 2732
1 TraesCS2A01G072200 chr2A 32025942 32027520 1578 True 1279.000000 1568 96.156000 276 2109 2 chr2A.!!$R3 1833
2 TraesCS2A01G072200 chr2A 120360187 120360810 623 False 1064.000000 1064 97.436000 2110 2733 1 chr2A.!!$F1 623
3 TraesCS2A01G072200 chr2A 32099852 32101745 1893 True 935.666667 1038 95.653667 112 2109 3 chr2A.!!$R4 1997
4 TraesCS2A01G072200 chr2A 32016747 32017829 1082 True 765.000000 846 92.280500 804 2107 2 chr2A.!!$R2 1303
5 TraesCS2A01G072200 chr2B 49284852 49286825 1973 False 924.000000 1136 93.854667 2 2109 3 chr2B.!!$F1 2107
6 TraesCS2A01G072200 chr2B 48147852 48149197 1345 True 895.000000 1086 93.280500 2 1264 2 chr2B.!!$R2 1262
7 TraesCS2A01G072200 chr2B 48215029 48216863 1834 True 849.666667 950 93.389667 142 2109 3 chr2B.!!$R4 1967
8 TraesCS2A01G072200 chr2B 48303581 48305450 1869 True 831.000000 918 92.826000 144 2109 3 chr2B.!!$R5 1965
9 TraesCS2A01G072200 chr2B 48179694 48181531 1837 True 800.333333 905 91.855000 142 2109 3 chr2B.!!$R3 1967
10 TraesCS2A01G072200 chr7A 424884109 424884733 624 False 1066.000000 1066 97.444000 2108 2733 1 chr7A.!!$F1 625
11 TraesCS2A01G072200 chr7A 484154688 484155319 631 False 1057.000000 1057 96.840000 2098 2730 1 chr7A.!!$F2 632
12 TraesCS2A01G072200 chr6A 430848124 430848747 623 False 1064.000000 1064 97.436000 2110 2733 1 chr6A.!!$F1 623
13 TraesCS2A01G072200 chr6A 555676461 555677086 625 False 1062.000000 1062 97.284000 2108 2733 1 chr6A.!!$F2 625
14 TraesCS2A01G072200 chr3A 176539215 176539837 622 True 1062.000000 1062 97.432000 2111 2733 1 chr3A.!!$R1 622
15 TraesCS2A01G072200 chr5A 521880087 521880713 626 False 1059.000000 1059 97.129000 2107 2733 1 chr5A.!!$F1 626
16 TraesCS2A01G072200 chr1A 62291270 62291893 623 False 1059.000000 1059 97.276000 2110 2733 1 chr1A.!!$F1 623
17 TraesCS2A01G072200 chr1A 377458938 377459576 638 False 1055.000000 1055 96.557000 2098 2733 1 chr1A.!!$F2 635
18 TraesCS2A01G072200 chr2D 29884221 29886171 1950 True 885.333333 981 93.233333 2 2109 3 chr2D.!!$R4 2107
19 TraesCS2A01G072200 chr2D 30237452 30238076 624 True 817.000000 817 90.190000 1478 2109 1 chr2D.!!$R3 631
20 TraesCS2A01G072200 chrUn 311530785 311531385 600 False 684.000000 684 86.970000 143 779 1 chrUn.!!$F1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 383 0.249531 TTTCTACGCGTGTGAAGGCA 60.250 50.0 24.59 8.59 0.0 4.75 F
786 848 0.918258 TGCTGGCATGTTATCCTGGA 59.082 50.0 0.00 0.00 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1755 1.915614 GCACCAGCACTCATGAACGG 61.916 60.0 0.0 0.0 41.58 4.44 R
2507 2641 0.253160 TAACAGGAGGCAGGGGACAT 60.253 55.0 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.627015 TCCCAGTGGTAGGTATATGTGTT 58.373 43.478 8.74 0.00 0.00 3.32
69 70 4.689612 ATATGTGTTCGCCTTCATAGGT 57.310 40.909 0.00 0.00 44.00 3.08
77 78 1.608025 CGCCTTCATAGGTGTGTGTGT 60.608 52.381 0.00 0.00 45.29 3.72
80 81 2.807967 CCTTCATAGGTGTGTGTGTGTG 59.192 50.000 0.00 0.00 36.74 3.82
94 99 1.265635 GTGTGTGTGTGTGTGTGTTGT 59.734 47.619 0.00 0.00 0.00 3.32
171 176 4.820716 TGGCCAACATTCAAAATTTGGAAG 59.179 37.500 13.34 8.23 40.97 3.46
298 303 6.356556 TGTGGGGACATGAGTCATTAATAAG 58.643 40.000 1.86 0.00 46.80 1.73
378 383 0.249531 TTTCTACGCGTGTGAAGGCA 60.250 50.000 24.59 8.59 0.00 4.75
507 512 2.021639 AGGAAGATCCCCAATCTCCTCA 60.022 50.000 4.76 0.00 44.26 3.86
526 531 2.093288 TCAAGCACCATCTGGCTCTAAG 60.093 50.000 0.00 0.00 40.01 2.18
533 538 2.211806 CATCTGGCTCTAAGCTTCAGC 58.788 52.381 18.14 18.14 41.99 4.26
597 632 3.570125 AGGCTTCTGGTGCTTTTAGTTTC 59.430 43.478 0.00 0.00 0.00 2.78
601 636 5.356882 TTCTGGTGCTTTTAGTTTCATCG 57.643 39.130 0.00 0.00 0.00 3.84
603 638 4.213270 TCTGGTGCTTTTAGTTTCATCGTG 59.787 41.667 0.00 0.00 0.00 4.35
622 657 3.084786 GTGAGGCTTCTGGTGCTTTTAT 58.915 45.455 0.00 0.00 0.00 1.40
623 658 4.261801 GTGAGGCTTCTGGTGCTTTTATA 58.738 43.478 0.00 0.00 0.00 0.98
786 848 0.918258 TGCTGGCATGTTATCCTGGA 59.082 50.000 0.00 0.00 0.00 3.86
818 945 4.472691 TTTCAGCTCTGTCATTGTTTCG 57.527 40.909 0.00 0.00 0.00 3.46
1045 1173 4.442192 CCACCTCTATCAAGGCACTACTTC 60.442 50.000 0.00 0.00 38.49 3.01
1064 1192 6.043854 ACTTCTAGAGGACATTGGAGTTTC 57.956 41.667 9.14 0.00 0.00 2.78
1207 1335 6.596888 CGATAAGAATATGCCCATCATGACTT 59.403 38.462 0.00 0.00 36.63 3.01
1274 1402 9.851686 ATTTGGCATATATATACTACCATGTGG 57.148 33.333 9.77 0.00 42.17 4.17
1373 1501 5.972107 AAAATTGCAAGTGAGCTCATAGT 57.028 34.783 21.47 4.95 34.99 2.12
1374 1502 5.972107 AAATTGCAAGTGAGCTCATAGTT 57.028 34.783 21.47 11.19 34.99 2.24
1375 1503 5.972107 AATTGCAAGTGAGCTCATAGTTT 57.028 34.783 21.47 9.55 34.99 2.66
1376 1504 5.557891 ATTGCAAGTGAGCTCATAGTTTC 57.442 39.130 21.47 9.13 34.99 2.78
1377 1505 4.006780 TGCAAGTGAGCTCATAGTTTCA 57.993 40.909 21.47 11.57 34.99 2.69
1378 1506 4.582869 TGCAAGTGAGCTCATAGTTTCAT 58.417 39.130 21.47 0.00 34.99 2.57
1379 1507 5.005740 TGCAAGTGAGCTCATAGTTTCATT 58.994 37.500 21.47 2.54 34.99 2.57
1380 1508 5.106436 TGCAAGTGAGCTCATAGTTTCATTG 60.106 40.000 21.47 14.37 34.99 2.82
1381 1509 5.106396 GCAAGTGAGCTCATAGTTTCATTGT 60.106 40.000 21.47 0.00 0.00 2.71
1382 1510 6.092670 GCAAGTGAGCTCATAGTTTCATTGTA 59.907 38.462 21.47 0.00 0.00 2.41
1383 1511 7.201679 GCAAGTGAGCTCATAGTTTCATTGTAT 60.202 37.037 21.47 0.00 0.00 2.29
1384 1512 8.671921 CAAGTGAGCTCATAGTTTCATTGTATT 58.328 33.333 21.47 0.00 0.00 1.89
1385 1513 8.798859 AGTGAGCTCATAGTTTCATTGTATTT 57.201 30.769 21.47 0.00 0.00 1.40
1386 1514 8.671921 AGTGAGCTCATAGTTTCATTGTATTTG 58.328 33.333 21.47 0.00 0.00 2.32
1387 1515 8.454106 GTGAGCTCATAGTTTCATTGTATTTGT 58.546 33.333 21.47 0.00 0.00 2.83
1388 1516 8.453320 TGAGCTCATAGTTTCATTGTATTTGTG 58.547 33.333 13.74 0.00 0.00 3.33
1389 1517 8.565896 AGCTCATAGTTTCATTGTATTTGTGA 57.434 30.769 0.00 0.00 0.00 3.58
1390 1518 9.013229 AGCTCATAGTTTCATTGTATTTGTGAA 57.987 29.630 0.00 0.00 0.00 3.18
1391 1519 9.624697 GCTCATAGTTTCATTGTATTTGTGAAA 57.375 29.630 0.00 0.00 38.95 2.69
1406 1534 9.284594 GTATTTGTGAAATACGCACATATTTGT 57.715 29.630 0.00 0.00 44.81 2.83
1408 1536 8.662369 TTTGTGAAATACGCACATATTTGTAC 57.338 30.769 0.00 0.00 44.81 2.90
1409 1537 6.470999 TGTGAAATACGCACATATTTGTACG 58.529 36.000 7.29 7.29 45.97 3.67
1410 1538 5.391433 GTGAAATACGCACATATTTGTACGC 59.609 40.000 8.59 0.00 44.70 4.42
1411 1539 3.763756 ATACGCACATATTTGTACGCG 57.236 42.857 15.86 15.86 44.70 6.01
1412 1540 1.631284 ACGCACATATTTGTACGCGA 58.369 45.000 21.65 0.00 45.80 5.87
1413 1541 1.994074 ACGCACATATTTGTACGCGAA 59.006 42.857 21.65 0.00 45.80 4.70
1414 1542 2.412429 ACGCACATATTTGTACGCGAAA 59.588 40.909 21.65 2.84 45.80 3.46
1415 1543 3.062909 ACGCACATATTTGTACGCGAAAT 59.937 39.130 21.65 11.48 45.80 2.17
1416 1544 3.414101 CGCACATATTTGTACGCGAAATG 59.586 43.478 15.93 7.72 45.80 2.32
1417 1545 4.583426 GCACATATTTGTACGCGAAATGA 58.417 39.130 15.93 0.00 33.76 2.57
1418 1546 5.025190 GCACATATTTGTACGCGAAATGAA 58.975 37.500 15.93 0.65 33.76 2.57
1419 1547 5.169561 GCACATATTTGTACGCGAAATGAAG 59.830 40.000 15.93 5.84 33.76 3.02
1420 1548 6.247903 CACATATTTGTACGCGAAATGAAGT 58.752 36.000 15.93 6.44 33.76 3.01
1421 1549 7.395645 CACATATTTGTACGCGAAATGAAGTA 58.604 34.615 15.93 0.00 33.76 2.24
1422 1550 8.061857 CACATATTTGTACGCGAAATGAAGTAT 58.938 33.333 15.93 2.06 33.76 2.12
1423 1551 8.061857 ACATATTTGTACGCGAAATGAAGTATG 58.938 33.333 15.93 15.21 33.16 2.39
1424 1552 3.918258 TGTACGCGAAATGAAGTATGC 57.082 42.857 15.93 0.00 0.00 3.14
1425 1553 3.254892 TGTACGCGAAATGAAGTATGCA 58.745 40.909 15.93 0.00 0.00 3.96
1426 1554 2.806288 ACGCGAAATGAAGTATGCAC 57.194 45.000 15.93 0.00 0.00 4.57
1427 1555 2.073056 ACGCGAAATGAAGTATGCACA 58.927 42.857 15.93 0.00 0.00 4.57
1428 1556 2.482336 ACGCGAAATGAAGTATGCACAA 59.518 40.909 15.93 0.00 0.00 3.33
1429 1557 3.058570 ACGCGAAATGAAGTATGCACAAA 60.059 39.130 15.93 0.00 0.00 2.83
1430 1558 3.911365 CGCGAAATGAAGTATGCACAAAA 59.089 39.130 0.00 0.00 0.00 2.44
1431 1559 4.558470 CGCGAAATGAAGTATGCACAAAAT 59.442 37.500 0.00 0.00 0.00 1.82
1432 1560 5.736824 CGCGAAATGAAGTATGCACAAAATA 59.263 36.000 0.00 0.00 0.00 1.40
1433 1561 6.414694 CGCGAAATGAAGTATGCACAAAATAT 59.585 34.615 0.00 0.00 0.00 1.28
1434 1562 7.549649 GCGAAATGAAGTATGCACAAAATATG 58.450 34.615 0.00 0.00 0.00 1.78
1703 1836 2.334023 GCCCTATCATTCAGGAGGTCT 58.666 52.381 0.00 0.00 34.91 3.85
1882 2015 5.977489 ATGGCAAGACATCATTATCCATG 57.023 39.130 0.00 0.00 32.40 3.66
2069 2203 5.492855 ACTAGTTAATGGTTAGTGTGGCA 57.507 39.130 0.00 0.00 0.00 4.92
2307 2441 5.851418 ACTCTATGTAACCCTAACCCTCTT 58.149 41.667 0.00 0.00 0.00 2.85
2507 2641 2.487625 CCCGAACCTGGGTAAAACTTCA 60.488 50.000 0.00 0.00 44.76 3.02
2655 2789 1.273606 CCGATGGCTCCTACGATCATT 59.726 52.381 0.00 0.00 0.00 2.57
2661 2795 3.646162 TGGCTCCTACGATCATTAATGGT 59.354 43.478 15.36 8.44 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.293318 CCTACCACTGGGAGCAGCA 61.293 63.158 0.96 0.00 38.05 4.41
69 70 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
70 71 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
71 72 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
72 73 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
73 74 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
77 78 1.803555 CTCACAACACACACACACACA 59.196 47.619 0.00 0.00 0.00 3.72
80 81 3.552604 AAACTCACAACACACACACAC 57.447 42.857 0.00 0.00 0.00 3.82
94 99 5.699001 AGACATGTTACAACGCATAAACTCA 59.301 36.000 0.00 0.00 0.00 3.41
378 383 3.200825 CCAATGGACAACCTATCTCCACT 59.799 47.826 0.00 0.00 36.90 4.00
507 512 1.407989 GCTTAGAGCCAGATGGTGCTT 60.408 52.381 0.00 0.00 38.11 3.91
526 531 8.184192 ACAAATAATGTAACATGTAGCTGAAGC 58.816 33.333 0.00 0.00 41.63 3.86
542 547 6.173427 ACAAGGCAGGAAAACAAATAATGT 57.827 33.333 0.00 0.00 46.82 2.71
597 632 1.364626 GCACCAGAAGCCTCACGATG 61.365 60.000 0.00 0.00 0.00 3.84
601 636 1.322442 AAAAGCACCAGAAGCCTCAC 58.678 50.000 0.00 0.00 0.00 3.51
603 638 4.333926 CACTATAAAAGCACCAGAAGCCTC 59.666 45.833 0.00 0.00 0.00 4.70
622 657 4.835284 TGGATGTAAAGCATGGACACTA 57.165 40.909 0.00 0.00 38.06 2.74
623 658 3.719268 TGGATGTAAAGCATGGACACT 57.281 42.857 0.00 0.00 38.06 3.55
982 1110 6.264744 AGCTCCATGATCACCTAAATGAATTG 59.735 38.462 0.00 0.00 30.82 2.32
1045 1173 5.659079 ACCTAGAAACTCCAATGTCCTCTAG 59.341 44.000 0.00 0.00 34.99 2.43
1207 1335 9.877222 TGATATAGAATTAAGTACCTCTGGACA 57.123 33.333 0.00 0.00 0.00 4.02
1350 1478 6.336842 ACTATGAGCTCACTTGCAATTTTT 57.663 33.333 20.97 0.33 34.99 1.94
1351 1479 5.972107 ACTATGAGCTCACTTGCAATTTT 57.028 34.783 20.97 0.92 34.99 1.82
1352 1480 5.972107 AACTATGAGCTCACTTGCAATTT 57.028 34.783 20.97 1.76 34.99 1.82
1353 1481 5.474532 TGAAACTATGAGCTCACTTGCAATT 59.525 36.000 20.97 8.01 34.99 2.32
1354 1482 5.005740 TGAAACTATGAGCTCACTTGCAAT 58.994 37.500 20.97 3.44 34.99 3.56
1355 1483 4.388485 TGAAACTATGAGCTCACTTGCAA 58.612 39.130 20.97 0.00 34.99 4.08
1356 1484 4.006780 TGAAACTATGAGCTCACTTGCA 57.993 40.909 20.97 12.49 34.99 4.08
1357 1485 5.106396 ACAATGAAACTATGAGCTCACTTGC 60.106 40.000 20.97 9.92 0.00 4.01
1358 1486 6.492007 ACAATGAAACTATGAGCTCACTTG 57.508 37.500 20.97 14.21 0.00 3.16
1359 1487 8.798859 AATACAATGAAACTATGAGCTCACTT 57.201 30.769 20.97 10.14 0.00 3.16
1360 1488 8.671921 CAAATACAATGAAACTATGAGCTCACT 58.328 33.333 20.97 11.03 0.00 3.41
1361 1489 8.454106 ACAAATACAATGAAACTATGAGCTCAC 58.546 33.333 20.97 5.61 0.00 3.51
1362 1490 8.453320 CACAAATACAATGAAACTATGAGCTCA 58.547 33.333 20.79 20.79 0.00 4.26
1363 1491 8.668353 TCACAAATACAATGAAACTATGAGCTC 58.332 33.333 6.82 6.82 0.00 4.09
1364 1492 8.565896 TCACAAATACAATGAAACTATGAGCT 57.434 30.769 0.00 0.00 0.00 4.09
1365 1493 9.624697 TTTCACAAATACAATGAAACTATGAGC 57.375 29.630 0.00 0.00 37.41 4.26
1380 1508 9.284594 ACAAATATGTGCGTATTTCACAAATAC 57.715 29.630 8.50 8.50 46.07 1.89
1382 1510 9.284594 GTACAAATATGTGCGTATTTCACAAAT 57.715 29.630 6.46 0.00 46.07 2.32
1383 1511 8.662369 GTACAAATATGTGCGTATTTCACAAA 57.338 30.769 6.46 0.00 46.07 2.83
1395 1523 4.583426 TCATTTCGCGTACAAATATGTGC 58.417 39.130 5.77 0.00 40.84 4.57
1396 1524 6.247903 ACTTCATTTCGCGTACAAATATGTG 58.752 36.000 5.77 0.00 40.84 3.21
1397 1525 6.417191 ACTTCATTTCGCGTACAAATATGT 57.583 33.333 5.77 2.43 43.74 2.29
1398 1526 7.058354 GCATACTTCATTTCGCGTACAAATATG 59.942 37.037 5.77 6.55 0.00 1.78
1399 1527 7.069569 GCATACTTCATTTCGCGTACAAATAT 58.930 34.615 5.77 0.00 0.00 1.28
1400 1528 6.036191 TGCATACTTCATTTCGCGTACAAATA 59.964 34.615 5.77 0.00 0.00 1.40
1401 1529 5.163804 TGCATACTTCATTTCGCGTACAAAT 60.164 36.000 5.77 1.68 0.00 2.32
1402 1530 4.152580 TGCATACTTCATTTCGCGTACAAA 59.847 37.500 5.77 0.00 0.00 2.83
1403 1531 3.680458 TGCATACTTCATTTCGCGTACAA 59.320 39.130 5.77 0.00 0.00 2.41
1404 1532 3.061563 GTGCATACTTCATTTCGCGTACA 59.938 43.478 5.77 0.00 0.00 2.90
1405 1533 3.061563 TGTGCATACTTCATTTCGCGTAC 59.938 43.478 5.77 0.00 0.00 3.67
1406 1534 3.254892 TGTGCATACTTCATTTCGCGTA 58.745 40.909 5.77 0.00 0.00 4.42
1407 1535 2.073056 TGTGCATACTTCATTTCGCGT 58.927 42.857 5.77 0.00 0.00 6.01
1408 1536 2.804421 TGTGCATACTTCATTTCGCG 57.196 45.000 0.00 0.00 0.00 5.87
1409 1537 7.431960 TCATATTTTGTGCATACTTCATTTCGC 59.568 33.333 0.00 0.00 0.00 4.70
1410 1538 8.839947 TCATATTTTGTGCATACTTCATTTCG 57.160 30.769 0.00 0.00 0.00 3.46
1622 1755 1.915614 GCACCAGCACTCATGAACGG 61.916 60.000 0.00 0.00 41.58 4.44
1703 1836 6.072286 GCCATCTCATTCTTCTTCTTGTTGAA 60.072 38.462 0.00 0.00 0.00 2.69
2307 2441 4.345837 CCCTCCGGTTTATATAGACACCAA 59.654 45.833 0.00 0.00 0.00 3.67
2507 2641 0.253160 TAACAGGAGGCAGGGGACAT 60.253 55.000 0.00 0.00 0.00 3.06
2655 2789 1.212688 CCCTGGACTGCATCACCATTA 59.787 52.381 0.00 0.00 33.08 1.90
2661 2795 0.545071 TCTCACCCTGGACTGCATCA 60.545 55.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.