Multiple sequence alignment - TraesCS2A01G070800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G070800 chr2A 100.000 3515 0 0 1 3515 31203449 31199935 0.000000e+00 6492.0
1 TraesCS2A01G070800 chr2A 90.102 586 55 2 64 646 528821822 528822407 0.000000e+00 758.0
2 TraesCS2A01G070800 chr2A 72.777 1282 270 57 1081 2321 85291747 85292990 9.280000e-96 361.0
3 TraesCS2A01G070800 chr2A 90.566 159 15 0 2375 2533 31146902 31146744 9.890000e-51 211.0
4 TraesCS2A01G070800 chr2A 86.164 159 20 2 2048 2205 83848095 83847938 1.680000e-38 171.0
5 TraesCS2A01G070800 chr2A 78.392 199 35 8 2069 2263 722061225 722061031 4.760000e-24 122.0
6 TraesCS2A01G070800 chr2B 91.824 2116 118 33 646 2721 47416733 47418833 0.000000e+00 2898.0
7 TraesCS2A01G070800 chr2B 87.533 754 68 11 2763 3515 47419284 47420012 0.000000e+00 848.0
8 TraesCS2A01G070800 chr2B 71.566 1456 305 73 1091 2499 135026369 135024976 9.540000e-76 294.0
9 TraesCS2A01G070800 chr2B 74.433 485 102 15 2025 2504 135086565 135086098 4.630000e-44 189.0
10 TraesCS2A01G070800 chr2B 73.582 564 118 23 1079 1625 135089970 135089421 1.670000e-43 187.0
11 TraesCS2A01G070800 chr2B 77.889 199 36 8 2069 2263 708993455 708993261 2.220000e-22 117.0
12 TraesCS2A01G070800 chr2D 91.208 2070 116 23 645 2684 29189468 29187435 0.000000e+00 2754.0
13 TraesCS2A01G070800 chr2D 78.947 190 32 8 2078 2263 587185584 587185399 4.760000e-24 122.0
14 TraesCS2A01G070800 chr5D 89.932 586 55 3 64 645 256270432 256271017 0.000000e+00 752.0
15 TraesCS2A01G070800 chr5D 89.590 586 56 3 64 644 445036863 445036278 0.000000e+00 739.0
16 TraesCS2A01G070800 chr3D 89.831 590 54 4 64 648 335200133 335200721 0.000000e+00 752.0
17 TraesCS2A01G070800 chr3D 89.726 584 58 2 63 644 415645343 415644760 0.000000e+00 745.0
18 TraesCS2A01G070800 chr6D 89.527 592 56 5 63 650 6551948 6551359 0.000000e+00 745.0
19 TraesCS2A01G070800 chr6D 89.626 588 57 3 64 647 343674863 343674276 0.000000e+00 745.0
20 TraesCS2A01G070800 chr7A 89.626 588 56 3 64 646 174926601 174927188 0.000000e+00 743.0
21 TraesCS2A01G070800 chr1A 89.492 590 57 4 64 649 512646746 512647334 0.000000e+00 741.0
22 TraesCS2A01G070800 chr3A 92.857 42 3 0 2682 2723 102623124 102623083 1.050000e-05 62.1
23 TraesCS2A01G070800 chr1B 88.462 52 5 1 2778 2829 5512500 5512550 1.050000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G070800 chr2A 31199935 31203449 3514 True 6492 6492 100.0000 1 3515 1 chr2A.!!$R2 3514
1 TraesCS2A01G070800 chr2A 528821822 528822407 585 False 758 758 90.1020 64 646 1 chr2A.!!$F2 582
2 TraesCS2A01G070800 chr2A 85291747 85292990 1243 False 361 361 72.7770 1081 2321 1 chr2A.!!$F1 1240
3 TraesCS2A01G070800 chr2B 47416733 47420012 3279 False 1873 2898 89.6785 646 3515 2 chr2B.!!$F1 2869
4 TraesCS2A01G070800 chr2B 135024976 135026369 1393 True 294 294 71.5660 1091 2499 1 chr2B.!!$R1 1408
5 TraesCS2A01G070800 chr2D 29187435 29189468 2033 True 2754 2754 91.2080 645 2684 1 chr2D.!!$R1 2039
6 TraesCS2A01G070800 chr5D 256270432 256271017 585 False 752 752 89.9320 64 645 1 chr5D.!!$F1 581
7 TraesCS2A01G070800 chr5D 445036278 445036863 585 True 739 739 89.5900 64 644 1 chr5D.!!$R1 580
8 TraesCS2A01G070800 chr3D 335200133 335200721 588 False 752 752 89.8310 64 648 1 chr3D.!!$F1 584
9 TraesCS2A01G070800 chr3D 415644760 415645343 583 True 745 745 89.7260 63 644 1 chr3D.!!$R1 581
10 TraesCS2A01G070800 chr6D 6551359 6551948 589 True 745 745 89.5270 63 650 1 chr6D.!!$R1 587
11 TraesCS2A01G070800 chr6D 343674276 343674863 587 True 745 745 89.6260 64 647 1 chr6D.!!$R2 583
12 TraesCS2A01G070800 chr7A 174926601 174927188 587 False 743 743 89.6260 64 646 1 chr7A.!!$F1 582
13 TraesCS2A01G070800 chr1A 512646746 512647334 588 False 741 741 89.4920 64 649 1 chr1A.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 639 0.110238 CGCAGACAAAATGGGTCGTG 60.110 55.0 0.0 0.0 40.20 4.35 F
691 703 0.756903 ACGTGTTTAGGAGGTGTGCT 59.243 50.0 0.0 0.0 0.00 4.40 F
820 858 1.200519 TTATTCCCTCCAGGTCCACG 58.799 55.0 0.0 0.0 36.75 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 2013 0.879765 CGAAGGAGACGTACACCACT 59.120 55.000 0.00 0.0 0.00 4.00 R
2035 2170 2.753043 GTCGTCCTGGCTCCGGTA 60.753 66.667 0.00 0.0 0.00 4.02 R
2751 2895 0.107459 GCGGATGCTCCTTTCTTCCT 60.107 55.000 1.51 0.0 38.39 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.683937 GCAGTGCGCCCAATGGTT 61.684 61.111 4.18 0.00 37.51 3.67
25 26 2.568090 CAGTGCGCCCAATGGTTC 59.432 61.111 4.18 0.00 33.63 3.62
26 27 3.055719 AGTGCGCCCAATGGTTCG 61.056 61.111 4.18 2.53 0.00 3.95
27 28 4.776647 GTGCGCCCAATGGTTCGC 62.777 66.667 22.93 22.93 40.98 4.70
55 56 4.957266 CGGCCATCGCTCGTTATA 57.043 55.556 2.24 0.00 34.44 0.98
56 57 3.188773 CGGCCATCGCTCGTTATAA 57.811 52.632 2.24 0.00 34.44 0.98
57 58 1.060713 CGGCCATCGCTCGTTATAAG 58.939 55.000 2.24 0.00 34.44 1.73
58 59 1.335597 CGGCCATCGCTCGTTATAAGA 60.336 52.381 2.24 0.00 34.44 2.10
59 60 2.750948 GGCCATCGCTCGTTATAAGAA 58.249 47.619 0.00 0.00 34.44 2.52
60 61 2.731976 GGCCATCGCTCGTTATAAGAAG 59.268 50.000 0.00 0.00 34.44 2.85
61 62 2.731976 GCCATCGCTCGTTATAAGAAGG 59.268 50.000 0.00 0.00 0.00 3.46
116 117 4.134563 GTTCTACAAGCAAAGGAGGTTGA 58.865 43.478 12.16 0.00 46.85 3.18
123 124 1.888391 GCAAAGGAGGTTGAAGAGGGG 60.888 57.143 0.00 0.00 0.00 4.79
129 130 2.125106 GTTGAAGAGGGGCGCGAT 60.125 61.111 12.10 0.00 0.00 4.58
169 170 1.541310 ATCGGGAGGACAAGCGTTCA 61.541 55.000 0.00 0.00 0.00 3.18
171 172 1.070786 GGGAGGACAAGCGTTCACA 59.929 57.895 0.00 0.00 0.00 3.58
183 184 1.572085 CGTTCACAGAAGCAGGCAGG 61.572 60.000 0.00 0.00 0.00 4.85
203 204 5.105997 GCAGGTCAATTGAAACTGAAGCTAT 60.106 40.000 30.66 3.67 34.92 2.97
248 249 1.138883 GACGAGGCGTATGCTGACA 59.861 57.895 6.92 0.00 41.37 3.58
261 262 4.767578 ATGCTGACACCTACATTCAGAT 57.232 40.909 2.02 0.00 39.36 2.90
264 265 4.256920 GCTGACACCTACATTCAGATGTT 58.743 43.478 2.02 0.00 43.92 2.71
462 469 4.760047 GGAAAGAGGGCGAGCGCA 62.760 66.667 17.16 0.00 44.11 6.09
533 545 2.738213 GAATGGATCGGCAGGCGGAT 62.738 60.000 17.49 14.95 38.44 4.18
564 576 0.948623 CACGTCCATTTGAGTCGGCA 60.949 55.000 0.00 0.00 0.00 5.69
566 578 0.948623 CGTCCATTTGAGTCGGCACA 60.949 55.000 0.00 0.00 0.00 4.57
627 639 0.110238 CGCAGACAAAATGGGTCGTG 60.110 55.000 0.00 0.00 40.20 4.35
666 678 8.935142 TCTTAGGGATGTAGAGATATCTCCTA 57.065 38.462 25.88 16.86 43.88 2.94
671 683 6.316890 GGGATGTAGAGATATCTCCTACGTTC 59.683 46.154 25.88 22.84 43.88 3.95
673 685 7.148373 GGATGTAGAGATATCTCCTACGTTCAC 60.148 44.444 25.88 17.09 43.88 3.18
691 703 0.756903 ACGTGTTTAGGAGGTGTGCT 59.243 50.000 0.00 0.00 0.00 4.40
760 777 7.982354 GCTATGAGTTGAGTGGATAAACTACTT 59.018 37.037 0.00 0.00 40.34 2.24
761 778 9.522804 CTATGAGTTGAGTGGATAAACTACTTC 57.477 37.037 0.00 0.00 40.34 3.01
762 779 7.297936 TGAGTTGAGTGGATAAACTACTTCA 57.702 36.000 0.00 0.00 40.34 3.02
782 799 8.494016 ACTTCAGTAGTTAATGCTTACATTCC 57.506 34.615 0.00 0.00 45.39 3.01
783 800 8.100791 ACTTCAGTAGTTAATGCTTACATTCCA 58.899 33.333 0.00 0.00 45.39 3.53
814 852 3.679389 CCATCGAATTATTCCCTCCAGG 58.321 50.000 0.00 0.00 0.00 4.45
820 858 1.200519 TTATTCCCTCCAGGTCCACG 58.799 55.000 0.00 0.00 36.75 4.94
832 870 2.226437 CAGGTCCACGGTTCAATTTCTG 59.774 50.000 0.00 0.00 0.00 3.02
835 873 1.879380 TCCACGGTTCAATTTCTGCAG 59.121 47.619 7.63 7.63 0.00 4.41
857 895 6.635030 AGTTTGACTGATTCCACTTAAACC 57.365 37.500 0.00 0.00 0.00 3.27
863 903 8.754991 TGACTGATTCCACTTAAACCTAAAAA 57.245 30.769 0.00 0.00 0.00 1.94
864 904 9.362151 TGACTGATTCCACTTAAACCTAAAAAT 57.638 29.630 0.00 0.00 0.00 1.82
899 939 6.803320 ACATTATTCGCATCAACAACTTTCAG 59.197 34.615 0.00 0.00 0.00 3.02
900 940 3.624326 TTCGCATCAACAACTTTCAGG 57.376 42.857 0.00 0.00 0.00 3.86
941 982 1.944709 CGTTGTTCCTCCGTTTTCCTT 59.055 47.619 0.00 0.00 0.00 3.36
945 991 1.797046 GTTCCTCCGTTTTCCTTCGAC 59.203 52.381 0.00 0.00 0.00 4.20
950 996 1.491563 CGTTTTCCTTCGACCTGCG 59.508 57.895 0.00 0.00 42.69 5.18
998 1052 3.663754 CGGCGTAATACACTAGCGACTAG 60.664 52.174 0.00 10.97 39.72 2.57
1075 1132 4.193334 CGAGCACGGCGGATGAGA 62.193 66.667 13.24 0.00 35.72 3.27
1726 1834 3.293702 GCTTCGAGGAGCTGGAGT 58.706 61.111 0.00 0.00 39.57 3.85
2073 2211 2.045045 CTGGCATGGCTTCCGGAA 60.045 61.111 21.08 17.73 0.00 4.30
2292 2430 4.284550 GAGTTGGCAGGGGTGGCA 62.285 66.667 0.00 0.00 42.75 4.92
2475 2619 4.020617 TGGGCGCTGGAGAAGGTG 62.021 66.667 7.64 0.00 0.00 4.00
2489 2633 4.740822 GGTGGCCGGCAAGTGGAT 62.741 66.667 30.85 0.00 0.00 3.41
2528 2672 2.299867 GGGATTGACTTGGTGCATGTTT 59.700 45.455 0.00 0.00 0.00 2.83
2587 2731 5.888161 GGGACAATCCATGATACTCTGTTTT 59.112 40.000 0.00 0.00 38.64 2.43
2618 2762 5.534654 CCCTACTCTGTTTTGTGGAATGAAA 59.465 40.000 0.00 0.00 0.00 2.69
2721 2865 8.592155 TGTAAGTCATCTGAATTTACGATTTCG 58.408 33.333 0.00 0.00 38.16 3.46
2722 2866 6.589830 AGTCATCTGAATTTACGATTTCGG 57.410 37.500 4.84 0.00 44.95 4.30
2723 2867 6.338146 AGTCATCTGAATTTACGATTTCGGA 58.662 36.000 4.84 0.00 44.95 4.55
2724 2868 6.816640 AGTCATCTGAATTTACGATTTCGGAA 59.183 34.615 4.84 0.00 44.95 4.30
2735 2879 5.796350 ACGATTTCGGAAAATGAAGTAGG 57.204 39.130 7.33 0.00 44.95 3.18
2736 2880 4.094442 ACGATTTCGGAAAATGAAGTAGGC 59.906 41.667 7.33 0.00 44.95 3.93
2737 2881 4.332819 CGATTTCGGAAAATGAAGTAGGCT 59.667 41.667 7.33 0.00 35.21 4.58
2738 2882 5.502544 CGATTTCGGAAAATGAAGTAGGCTC 60.503 44.000 7.33 0.00 35.21 4.70
2739 2883 2.888594 TCGGAAAATGAAGTAGGCTCG 58.111 47.619 0.00 0.00 0.00 5.03
2740 2884 1.327764 CGGAAAATGAAGTAGGCTCGC 59.672 52.381 0.00 0.00 0.00 5.03
2741 2885 1.671328 GGAAAATGAAGTAGGCTCGCC 59.329 52.381 0.00 0.00 0.00 5.54
2742 2886 1.327764 GAAAATGAAGTAGGCTCGCCG 59.672 52.381 1.69 0.00 41.95 6.46
2743 2887 0.462047 AAATGAAGTAGGCTCGCCGG 60.462 55.000 0.00 0.00 41.95 6.13
2744 2888 2.311688 AATGAAGTAGGCTCGCCGGG 62.312 60.000 2.18 0.00 41.95 5.73
2745 2889 4.222847 GAAGTAGGCTCGCCGGGG 62.223 72.222 13.31 13.31 41.95 5.73
2746 2890 4.772231 AAGTAGGCTCGCCGGGGA 62.772 66.667 21.27 21.27 41.95 4.81
2747 2891 4.772231 AGTAGGCTCGCCGGGGAA 62.772 66.667 22.77 4.43 41.95 3.97
2748 2892 4.222847 GTAGGCTCGCCGGGGAAG 62.223 72.222 22.77 16.47 41.95 3.46
2752 2896 4.840005 GCTCGCCGGGGAAGGAAG 62.840 72.222 22.77 11.31 0.00 3.46
2753 2897 4.162690 CTCGCCGGGGAAGGAAGG 62.163 72.222 22.77 5.72 0.00 3.46
2754 2898 4.707768 TCGCCGGGGAAGGAAGGA 62.708 66.667 20.34 0.00 0.00 3.36
2755 2899 3.712907 CGCCGGGGAAGGAAGGAA 61.713 66.667 14.46 0.00 0.00 3.36
2756 2900 2.272471 GCCGGGGAAGGAAGGAAG 59.728 66.667 2.18 0.00 0.00 3.46
2757 2901 2.298661 GCCGGGGAAGGAAGGAAGA 61.299 63.158 2.18 0.00 0.00 2.87
2758 2902 1.848886 GCCGGGGAAGGAAGGAAGAA 61.849 60.000 2.18 0.00 0.00 2.52
2759 2903 0.696501 CCGGGGAAGGAAGGAAGAAA 59.303 55.000 0.00 0.00 0.00 2.52
2760 2904 1.340114 CCGGGGAAGGAAGGAAGAAAG 60.340 57.143 0.00 0.00 0.00 2.62
2761 2905 1.340114 CGGGGAAGGAAGGAAGAAAGG 60.340 57.143 0.00 0.00 0.00 3.11
2817 3370 2.285083 TCGCCGACAATCTATTTTGGG 58.715 47.619 0.00 0.00 0.00 4.12
2830 3383 1.000041 TTTTGGGGTGGTAGGGTGGT 61.000 55.000 0.00 0.00 0.00 4.16
2846 3399 1.674962 GTGGTAGACTCGCCGACTATT 59.325 52.381 0.00 0.00 0.00 1.73
2856 3409 6.039047 AGACTCGCCGACTATTTGTCTTATAA 59.961 38.462 0.00 0.00 43.25 0.98
2867 3420 1.765904 TGTCTTATAATGGCAGGCCGA 59.234 47.619 5.74 0.00 39.42 5.54
2901 3454 1.485294 TATGGGTGTGAAGGCGGTGT 61.485 55.000 0.00 0.00 0.00 4.16
2905 3458 1.370064 GTGTGAAGGCGGTGTAGGT 59.630 57.895 0.00 0.00 0.00 3.08
2933 3487 4.276678 CAGGAAAAGAACTGCTCATTGTCA 59.723 41.667 0.00 0.00 0.00 3.58
2934 3488 4.518211 AGGAAAAGAACTGCTCATTGTCAG 59.482 41.667 6.99 6.99 36.45 3.51
2951 3505 0.988145 CAGGGTTAGAGGGATGGCCA 60.988 60.000 8.56 8.56 35.15 5.36
2996 3550 4.143301 GGTGATTGGGGGAGGGCC 62.143 72.222 0.00 0.00 0.00 5.80
3013 3567 3.414700 CGGCGGCAAGACTGACAC 61.415 66.667 10.53 0.00 30.22 3.67
3021 3575 3.575351 AAGACTGACACGGGAGCGC 62.575 63.158 0.00 0.00 0.00 5.92
3059 3613 3.946201 AGCAGGCGGTTCAGCTGT 61.946 61.111 14.67 0.00 35.72 4.40
3071 3625 1.123077 TCAGCTGTTGGTGACTCTGT 58.877 50.000 14.67 0.00 44.58 3.41
3084 3638 2.171840 GACTCTGTGGCTTGAGGTAGA 58.828 52.381 0.00 0.00 34.84 2.59
3085 3639 2.563179 GACTCTGTGGCTTGAGGTAGAA 59.437 50.000 0.00 0.00 34.84 2.10
3086 3640 2.564947 ACTCTGTGGCTTGAGGTAGAAG 59.435 50.000 0.00 0.00 34.84 2.85
3087 3641 2.828520 CTCTGTGGCTTGAGGTAGAAGA 59.171 50.000 0.00 0.00 0.00 2.87
3131 3685 1.406539 CCCTCTGGCCATTCATTTTCG 59.593 52.381 5.51 0.00 0.00 3.46
3141 3695 3.623060 CCATTCATTTTCGATCAGACGGT 59.377 43.478 0.00 0.00 0.00 4.83
3166 3720 8.508875 GTTAGAAAACCAATCGACTAATCCAAA 58.491 33.333 0.00 0.00 0.00 3.28
3190 3744 6.773976 TGAAATTTTCAGTTGACTGGTCTT 57.226 33.333 7.74 0.00 43.91 3.01
3192 3746 8.287439 TGAAATTTTCAGTTGACTGGTCTTTA 57.713 30.769 7.74 0.00 43.91 1.85
3193 3747 8.405531 TGAAATTTTCAGTTGACTGGTCTTTAG 58.594 33.333 7.74 0.00 43.91 1.85
3196 3750 2.069273 CAGTTGACTGGTCTTTAGCCG 58.931 52.381 3.19 0.00 40.20 5.52
3199 3753 0.320374 TGACTGGTCTTTAGCCGGTG 59.680 55.000 1.90 0.00 44.95 4.94
3203 3757 1.745489 GGTCTTTAGCCGGTGCCTG 60.745 63.158 1.90 0.00 38.69 4.85
3224 3778 5.048504 CCTGTTTAGATCAACATTGCACACT 60.049 40.000 0.00 0.00 36.08 3.55
3262 3816 1.474077 GATTGACCCTCCACATTGCAC 59.526 52.381 0.00 0.00 0.00 4.57
3263 3817 0.184692 TTGACCCTCCACATTGCACA 59.815 50.000 0.00 0.00 0.00 4.57
3264 3818 0.537143 TGACCCTCCACATTGCACAC 60.537 55.000 0.00 0.00 0.00 3.82
3272 3826 2.697229 TCCACATTGCACACCATTTTCA 59.303 40.909 0.00 0.00 0.00 2.69
3274 3828 3.433957 CCACATTGCACACCATTTTCATG 59.566 43.478 0.00 0.00 0.00 3.07
3289 3843 6.645827 CCATTTTCATGTTCTAACATTGTGCA 59.354 34.615 5.60 0.00 46.95 4.57
3299 3853 2.122280 ATTGTGCAATGGGCCCCA 59.878 55.556 22.27 4.05 43.89 4.96
3300 3854 2.292559 ATTGTGCAATGGGCCCCAC 61.293 57.895 22.27 20.31 43.89 4.61
3302 3856 4.702274 GTGCAATGGGCCCCACCT 62.702 66.667 22.27 0.00 43.89 4.00
3303 3857 2.943827 TGCAATGGGCCCCACCTA 60.944 61.111 22.27 0.00 43.89 3.08
3304 3858 2.323758 TGCAATGGGCCCCACCTAT 61.324 57.895 22.27 1.51 42.53 2.57
3305 3859 1.833934 GCAATGGGCCCCACCTATG 60.834 63.158 22.27 10.15 39.06 2.23
3317 3871 2.303022 CCCACCTATGACCTATCGCATT 59.697 50.000 0.00 0.00 0.00 3.56
3336 3890 7.623770 TCGCATTCAATTTTCGTATACTAACC 58.376 34.615 0.56 0.00 0.00 2.85
3372 3926 4.825085 TCCCTTCTACCACACACAATTTTC 59.175 41.667 0.00 0.00 0.00 2.29
3404 3958 2.330216 GTGTGCTATGGACCCCTCTAT 58.670 52.381 0.00 0.00 0.00 1.98
3413 3967 0.179108 GACCCCTCTATCGCACACAC 60.179 60.000 0.00 0.00 0.00 3.82
3415 3969 1.511305 CCCTCTATCGCACACACGT 59.489 57.895 0.00 0.00 0.00 4.49
3416 3970 0.525668 CCCTCTATCGCACACACGTC 60.526 60.000 0.00 0.00 0.00 4.34
3419 3973 0.170339 TCTATCGCACACACGTCTGG 59.830 55.000 0.00 0.00 0.00 3.86
3420 3974 0.170339 CTATCGCACACACGTCTGGA 59.830 55.000 0.00 0.00 0.00 3.86
3421 3975 0.599060 TATCGCACACACGTCTGGAA 59.401 50.000 0.00 0.00 0.00 3.53
3422 3976 0.249699 ATCGCACACACGTCTGGAAA 60.250 50.000 0.00 0.00 0.00 3.13
3423 3977 0.460459 TCGCACACACGTCTGGAAAA 60.460 50.000 0.00 0.00 0.00 2.29
3424 3978 0.042188 CGCACACACGTCTGGAAAAG 60.042 55.000 0.00 0.00 0.00 2.27
3425 3979 0.307760 GCACACACGTCTGGAAAAGG 59.692 55.000 0.00 0.00 0.00 3.11
3426 3980 1.663695 CACACACGTCTGGAAAAGGT 58.336 50.000 0.00 0.00 0.00 3.50
3427 3981 1.330521 CACACACGTCTGGAAAAGGTG 59.669 52.381 0.00 0.00 38.23 4.00
3428 3982 1.065709 ACACACGTCTGGAAAAGGTGT 60.066 47.619 0.00 0.00 44.14 4.16
3429 3983 2.168936 ACACACGTCTGGAAAAGGTGTA 59.831 45.455 1.20 0.00 42.13 2.90
3442 3996 1.382629 GGTGTACCATGGCACCCTT 59.617 57.895 24.08 3.15 46.91 3.95
3453 4007 4.279169 CCATGGCACCCTTAATCAATACAG 59.721 45.833 0.00 0.00 0.00 2.74
3473 4027 1.112459 GCAAAGCACGTGTTTTCGAG 58.888 50.000 24.99 16.17 34.70 4.04
3475 4029 2.789779 GCAAAGCACGTGTTTTCGAGAA 60.790 45.455 24.99 0.00 34.70 2.87
3478 4032 0.653636 GCACGTGTTTTCGAGAACCA 59.346 50.000 18.38 2.21 34.70 3.67
3492 4046 2.932614 GAGAACCATGTGTGATTCGGAG 59.067 50.000 0.00 0.00 0.00 4.63
3495 4049 3.140325 ACCATGTGTGATTCGGAGTTT 57.860 42.857 0.00 0.00 0.00 2.66
3496 4050 2.813754 ACCATGTGTGATTCGGAGTTTG 59.186 45.455 0.00 0.00 0.00 2.93
3511 4065 3.365969 GGAGTTTGAACCGTTTGCATAGG 60.366 47.826 0.00 0.00 0.00 2.57
3514 4068 0.963355 TGAACCGTTTGCATAGGCCC 60.963 55.000 0.00 0.00 40.13 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.631487 GAACCATTGGGCGCACTGC 62.631 63.158 12.74 0.00 45.38 4.40
8 9 2.568090 GAACCATTGGGCGCACTG 59.432 61.111 12.74 13.38 37.90 3.66
9 10 3.055719 CGAACCATTGGGCGCACT 61.056 61.111 12.74 0.00 37.90 4.40
10 11 4.776647 GCGAACCATTGGGCGCAC 62.777 66.667 28.74 6.04 45.15 5.34
38 39 1.060713 CTTATAACGAGCGATGGCCG 58.939 55.000 0.00 8.56 41.24 6.13
39 40 2.433868 TCTTATAACGAGCGATGGCC 57.566 50.000 0.00 0.00 41.24 5.36
40 41 2.731976 CCTTCTTATAACGAGCGATGGC 59.268 50.000 0.00 0.00 40.37 4.40
41 42 2.731976 GCCTTCTTATAACGAGCGATGG 59.268 50.000 0.00 0.00 0.00 3.51
42 43 2.405357 CGCCTTCTTATAACGAGCGATG 59.595 50.000 8.10 0.00 44.51 3.84
43 44 2.662700 CGCCTTCTTATAACGAGCGAT 58.337 47.619 8.10 0.00 44.51 4.58
44 45 1.862815 GCGCCTTCTTATAACGAGCGA 60.863 52.381 14.93 0.00 44.51 4.93
45 46 0.503117 GCGCCTTCTTATAACGAGCG 59.497 55.000 0.00 9.06 44.54 5.03
46 47 1.854227 AGCGCCTTCTTATAACGAGC 58.146 50.000 2.29 0.00 0.00 5.03
47 48 2.795470 GGAAGCGCCTTCTTATAACGAG 59.205 50.000 2.29 0.00 40.07 4.18
48 49 2.482490 GGGAAGCGCCTTCTTATAACGA 60.482 50.000 2.29 0.00 40.07 3.85
49 50 1.865340 GGGAAGCGCCTTCTTATAACG 59.135 52.381 2.29 0.00 40.07 3.18
50 51 1.865340 CGGGAAGCGCCTTCTTATAAC 59.135 52.381 2.29 0.00 40.07 1.89
51 52 1.808891 GCGGGAAGCGCCTTCTTATAA 60.809 52.381 2.29 0.00 40.07 0.98
52 53 0.249741 GCGGGAAGCGCCTTCTTATA 60.250 55.000 2.29 0.00 40.07 0.98
53 54 1.523938 GCGGGAAGCGCCTTCTTAT 60.524 57.895 2.29 0.00 40.07 1.73
54 55 2.125269 GCGGGAAGCGCCTTCTTA 60.125 61.111 2.29 0.00 40.07 2.10
116 117 3.854669 CCTCATCGCGCCCCTCTT 61.855 66.667 0.00 0.00 0.00 2.85
123 124 4.959596 GCTCCCTCCTCATCGCGC 62.960 72.222 0.00 0.00 0.00 6.86
147 148 0.395311 ACGCTTGTCCTCCCGATAGA 60.395 55.000 0.00 0.00 39.76 1.98
169 170 0.403271 ATTGACCTGCCTGCTTCTGT 59.597 50.000 0.00 0.00 0.00 3.41
171 172 1.074405 TCAATTGACCTGCCTGCTTCT 59.926 47.619 3.38 0.00 0.00 2.85
183 184 7.369803 TCTCATAGCTTCAGTTTCAATTGAC 57.630 36.000 7.89 0.00 0.00 3.18
203 204 2.281208 CCAACCCGCCGTTTCTCA 60.281 61.111 0.00 0.00 29.93 3.27
248 249 4.104086 TCCTCCAACATCTGAATGTAGGT 58.896 43.478 5.99 0.00 45.48 3.08
261 262 1.553248 CGGTAATGTCCTCCTCCAACA 59.447 52.381 0.00 0.00 0.00 3.33
264 265 1.006758 ACTCGGTAATGTCCTCCTCCA 59.993 52.381 0.00 0.00 0.00 3.86
462 469 0.243907 CGGACACAAGATGGACGAGT 59.756 55.000 0.00 0.00 34.58 4.18
464 473 1.080093 GCGGACACAAGATGGACGA 60.080 57.895 0.00 0.00 34.58 4.20
470 481 4.063967 TCGGCGCGGACACAAGAT 62.064 61.111 14.27 0.00 0.00 2.40
498 509 6.568462 CGATCCATTCCCGATTATTTTTGAGG 60.568 42.308 0.00 0.00 0.00 3.86
533 545 3.033764 GACGTGCGTCCGCTTTCA 61.034 61.111 13.31 0.00 42.51 2.69
552 564 1.176527 CCCAATGTGCCGACTCAAAT 58.823 50.000 0.00 0.00 0.00 2.32
627 639 4.718961 TCCCTAAGAGCAATTCTAATGGC 58.281 43.478 0.00 0.00 34.14 4.40
671 683 0.865769 GCACACCTCCTAAACACGTG 59.134 55.000 15.48 15.48 0.00 4.49
673 685 1.148310 CAGCACACCTCCTAAACACG 58.852 55.000 0.00 0.00 0.00 4.49
691 703 2.238942 TTCTTCGCACTTCTGCTTCA 57.761 45.000 0.00 0.00 41.77 3.02
716 733 1.817941 CCGGGGTCCGCAAACTATG 60.818 63.158 6.75 0.00 46.86 2.23
733 750 5.675538 AGTTTATCCACTCAACTCATAGCC 58.324 41.667 0.00 0.00 0.00 3.93
760 777 7.620880 ACTGGAATGTAAGCATTAACTACTGA 58.379 34.615 0.00 0.00 44.61 3.41
761 778 7.849804 ACTGGAATGTAAGCATTAACTACTG 57.150 36.000 0.00 0.00 44.61 2.74
762 779 8.730680 CAAACTGGAATGTAAGCATTAACTACT 58.269 33.333 0.00 0.00 44.61 2.57
783 800 5.066505 GGAATAATTCGATGGCAGACAAACT 59.933 40.000 0.00 0.00 0.00 2.66
814 852 1.606668 TGCAGAAATTGAACCGTGGAC 59.393 47.619 0.00 0.00 0.00 4.02
820 858 4.741676 CAGTCAAACTGCAGAAATTGAACC 59.258 41.667 23.35 15.00 39.62 3.62
832 870 5.689383 TTAAGTGGAATCAGTCAAACTGC 57.311 39.130 2.18 0.00 45.54 4.40
835 873 6.635030 AGGTTTAAGTGGAATCAGTCAAAC 57.365 37.500 0.00 0.00 0.00 2.93
871 911 9.123709 GAAAGTTGTTGATGCGAATAATGTTTA 57.876 29.630 0.00 0.00 0.00 2.01
876 916 6.324819 CCTGAAAGTTGTTGATGCGAATAAT 58.675 36.000 0.00 0.00 0.00 1.28
899 939 0.874175 GACTTTTTGCGGTTGGTGCC 60.874 55.000 0.00 0.00 0.00 5.01
900 940 0.102300 AGACTTTTTGCGGTTGGTGC 59.898 50.000 0.00 0.00 0.00 5.01
941 982 2.652382 TTTGTGGCTTCGCAGGTCGA 62.652 55.000 0.00 0.00 46.88 4.20
945 991 2.153366 AATTTTTGTGGCTTCGCAGG 57.847 45.000 0.00 0.00 32.00 4.85
950 996 3.429881 GCACAGCTAATTTTTGTGGCTTC 59.570 43.478 14.53 0.46 41.81 3.86
958 1004 1.067635 CCGCCTGCACAGCTAATTTTT 60.068 47.619 2.71 0.00 0.00 1.94
987 1037 1.101635 TCGCCATGCTAGTCGCTAGT 61.102 55.000 13.14 0.00 40.11 2.57
1013 1067 2.110213 GGTCACTTGCACCGGTGA 59.890 61.111 38.30 19.89 39.71 4.02
1089 1146 4.357947 GCCAGCAGGACGACGTGA 62.358 66.667 4.58 0.00 36.89 4.35
1182 1242 1.443872 GGTGAGCGTGACGATCGTT 60.444 57.895 23.63 5.51 45.61 3.85
1875 2010 2.217510 AGGAGACGTACACCACTGAT 57.782 50.000 0.00 0.00 0.00 2.90
1878 2013 0.879765 CGAAGGAGACGTACACCACT 59.120 55.000 0.00 0.00 0.00 4.00
1917 2052 3.669036 CTCGACCGTCTGCTCCACG 62.669 68.421 0.00 0.00 36.99 4.94
2035 2170 2.753043 GTCGTCCTGGCTCCGGTA 60.753 66.667 0.00 0.00 0.00 4.02
2278 2416 4.601794 CAGTGCCACCCCTGCCAA 62.602 66.667 0.00 0.00 0.00 4.52
2458 2602 4.020617 CACCTTCTCCAGCGCCCA 62.021 66.667 2.29 0.00 0.00 5.36
2550 2694 5.821097 TGGATTGTCCCATGTGTACAAATA 58.179 37.500 0.00 0.00 36.75 1.40
2587 2731 4.524714 CACAAAACAGAGTAGGGAGAGAGA 59.475 45.833 0.00 0.00 0.00 3.10
2618 2762 5.009610 ACTCTTCAAACAATTACCGTGCATT 59.990 36.000 0.00 0.00 0.00 3.56
2707 2851 8.669394 ACTTCATTTTCCGAAATCGTAAATTC 57.331 30.769 1.79 0.00 33.25 2.17
2721 2865 1.671328 GGCGAGCCTACTTCATTTTCC 59.329 52.381 6.90 0.00 0.00 3.13
2722 2866 1.327764 CGGCGAGCCTACTTCATTTTC 59.672 52.381 12.70 0.00 0.00 2.29
2723 2867 1.369625 CGGCGAGCCTACTTCATTTT 58.630 50.000 12.70 0.00 0.00 1.82
2724 2868 0.462047 CCGGCGAGCCTACTTCATTT 60.462 55.000 9.30 0.00 0.00 2.32
2725 2869 1.144057 CCGGCGAGCCTACTTCATT 59.856 57.895 9.30 0.00 0.00 2.57
2726 2870 2.797278 CCCGGCGAGCCTACTTCAT 61.797 63.158 9.30 0.00 0.00 2.57
2727 2871 3.458163 CCCGGCGAGCCTACTTCA 61.458 66.667 9.30 0.00 0.00 3.02
2728 2872 4.222847 CCCCGGCGAGCCTACTTC 62.223 72.222 9.30 0.00 0.00 3.01
2729 2873 4.772231 TCCCCGGCGAGCCTACTT 62.772 66.667 9.30 0.00 0.00 2.24
2730 2874 4.772231 TTCCCCGGCGAGCCTACT 62.772 66.667 9.30 0.00 0.00 2.57
2731 2875 4.222847 CTTCCCCGGCGAGCCTAC 62.223 72.222 9.30 0.00 0.00 3.18
2735 2879 4.840005 CTTCCTTCCCCGGCGAGC 62.840 72.222 9.30 0.00 0.00 5.03
2736 2880 4.162690 CCTTCCTTCCCCGGCGAG 62.163 72.222 9.30 0.00 0.00 5.03
2737 2881 4.707768 TCCTTCCTTCCCCGGCGA 62.708 66.667 9.30 0.00 0.00 5.54
2738 2882 3.682292 CTTCCTTCCTTCCCCGGCG 62.682 68.421 0.00 0.00 0.00 6.46
2739 2883 1.848886 TTCTTCCTTCCTTCCCCGGC 61.849 60.000 0.00 0.00 0.00 6.13
2740 2884 0.696501 TTTCTTCCTTCCTTCCCCGG 59.303 55.000 0.00 0.00 0.00 5.73
2741 2885 1.340114 CCTTTCTTCCTTCCTTCCCCG 60.340 57.143 0.00 0.00 0.00 5.73
2742 2886 1.993301 TCCTTTCTTCCTTCCTTCCCC 59.007 52.381 0.00 0.00 0.00 4.81
2743 2887 2.619332 GCTCCTTTCTTCCTTCCTTCCC 60.619 54.545 0.00 0.00 0.00 3.97
2744 2888 2.040412 TGCTCCTTTCTTCCTTCCTTCC 59.960 50.000 0.00 0.00 0.00 3.46
2745 2889 3.425162 TGCTCCTTTCTTCCTTCCTTC 57.575 47.619 0.00 0.00 0.00 3.46
2746 2890 3.308760 GGATGCTCCTTTCTTCCTTCCTT 60.309 47.826 0.00 0.00 32.53 3.36
2747 2891 2.240921 GGATGCTCCTTTCTTCCTTCCT 59.759 50.000 0.00 0.00 32.53 3.36
2748 2892 2.649190 GGATGCTCCTTTCTTCCTTCC 58.351 52.381 0.00 0.00 32.53 3.46
2749 2893 2.284190 CGGATGCTCCTTTCTTCCTTC 58.716 52.381 1.51 0.00 33.30 3.46
2750 2894 1.680249 GCGGATGCTCCTTTCTTCCTT 60.680 52.381 1.51 0.00 38.39 3.36
2751 2895 0.107459 GCGGATGCTCCTTTCTTCCT 60.107 55.000 1.51 0.00 38.39 3.36
2752 2896 2.398803 GCGGATGCTCCTTTCTTCC 58.601 57.895 1.51 0.00 38.39 3.46
2771 3324 2.500098 GCCACCCTAATATAGATCGGCA 59.500 50.000 0.00 0.00 34.85 5.69
2773 3326 3.133003 CCTGCCACCCTAATATAGATCGG 59.867 52.174 0.00 0.00 0.00 4.18
2776 3329 3.777522 GAGCCTGCCACCCTAATATAGAT 59.222 47.826 0.00 0.00 0.00 1.98
2817 3370 1.482954 GAGTCTACCACCCTACCACC 58.517 60.000 0.00 0.00 0.00 4.61
2830 3383 3.687572 GACAAATAGTCGGCGAGTCTA 57.312 47.619 22.13 14.93 37.53 2.59
2846 3399 2.171659 TCGGCCTGCCATTATAAGACAA 59.828 45.455 9.17 0.00 35.37 3.18
2856 3409 1.834856 ATCATCGATCGGCCTGCCAT 61.835 55.000 16.41 0.00 35.37 4.40
2867 3420 8.539117 TCACACCCATAAGATATATCATCGAT 57.461 34.615 15.08 0.00 0.00 3.59
2901 3454 4.714632 CAGTTCTTTTCCTGGTGAACCTA 58.285 43.478 15.18 0.00 39.45 3.08
2905 3458 3.214328 GAGCAGTTCTTTTCCTGGTGAA 58.786 45.455 0.00 0.00 39.36 3.18
2911 3464 4.464008 TGACAATGAGCAGTTCTTTTCCT 58.536 39.130 0.00 0.00 0.00 3.36
2918 3472 2.191128 ACCCTGACAATGAGCAGTTC 57.809 50.000 6.99 0.00 0.00 3.01
2933 3487 0.695803 CTGGCCATCCCTCTAACCCT 60.696 60.000 5.51 0.00 0.00 4.34
2934 3488 1.709994 CCTGGCCATCCCTCTAACCC 61.710 65.000 5.51 0.00 0.00 4.11
2951 3505 3.721706 GTGCTACAGCTGCCCCCT 61.722 66.667 15.27 0.00 42.66 4.79
2996 3550 3.414700 GTGTCAGTCTTGCCGCCG 61.415 66.667 0.00 0.00 0.00 6.46
2999 3553 2.738521 CCCGTGTCAGTCTTGCCG 60.739 66.667 0.00 0.00 0.00 5.69
3001 3555 2.029844 GCTCCCGTGTCAGTCTTGC 61.030 63.158 0.00 0.00 0.00 4.01
3006 3560 4.363990 CAGCGCTCCCGTGTCAGT 62.364 66.667 7.13 0.00 36.67 3.41
3054 3608 0.107456 CCACAGAGTCACCAACAGCT 59.893 55.000 0.00 0.00 0.00 4.24
3057 3611 0.546122 AAGCCACAGAGTCACCAACA 59.454 50.000 0.00 0.00 0.00 3.33
3059 3613 0.836606 TCAAGCCACAGAGTCACCAA 59.163 50.000 0.00 0.00 0.00 3.67
3065 3619 2.310779 TCTACCTCAAGCCACAGAGT 57.689 50.000 0.00 0.00 0.00 3.24
3071 3625 0.246635 GCGTCTTCTACCTCAAGCCA 59.753 55.000 0.00 0.00 0.00 4.75
3084 3638 0.600255 CAACCTTGAGACCGCGTCTT 60.600 55.000 4.92 0.00 43.53 3.01
3085 3639 1.006102 CAACCTTGAGACCGCGTCT 60.006 57.895 4.92 8.22 46.42 4.18
3086 3640 0.599204 TTCAACCTTGAGACCGCGTC 60.599 55.000 4.92 2.66 38.61 5.19
3087 3641 0.600255 CTTCAACCTTGAGACCGCGT 60.600 55.000 4.92 0.00 38.61 6.01
3117 3671 3.546815 CGTCTGATCGAAAATGAATGGCC 60.547 47.826 0.00 0.00 0.00 5.36
3121 3675 6.338146 TCTAACCGTCTGATCGAAAATGAAT 58.662 36.000 0.00 0.00 0.00 2.57
3141 3695 8.624367 TTTGGATTAGTCGATTGGTTTTCTAA 57.376 30.769 0.00 0.00 0.00 2.10
3159 3713 9.048446 CAGTCAACTGAAAATTTCATTTGGATT 57.952 29.630 27.08 16.02 45.17 3.01
3160 3714 7.658575 CCAGTCAACTGAAAATTTCATTTGGAT 59.341 33.333 27.08 18.03 45.17 3.41
3161 3715 6.985645 CCAGTCAACTGAAAATTTCATTTGGA 59.014 34.615 27.08 16.74 45.17 3.53
3166 3720 6.966534 AGACCAGTCAACTGAAAATTTCAT 57.033 33.333 9.02 0.00 46.59 2.57
3190 3744 0.978151 TCTAAACAGGCACCGGCTAA 59.022 50.000 0.00 0.00 40.87 3.09
3192 3746 0.107654 GATCTAAACAGGCACCGGCT 60.108 55.000 0.00 0.00 40.87 5.52
3193 3747 0.392461 TGATCTAAACAGGCACCGGC 60.392 55.000 0.00 0.00 40.13 6.13
3196 3750 4.737054 CAATGTTGATCTAAACAGGCACC 58.263 43.478 5.06 0.00 42.99 5.01
3199 3753 4.168760 GTGCAATGTTGATCTAAACAGGC 58.831 43.478 13.82 13.82 42.99 4.85
3203 3757 5.156355 CCAGTGTGCAATGTTGATCTAAAC 58.844 41.667 0.00 0.00 0.00 2.01
3224 3778 0.817229 TCACACATGCTTGCGAACCA 60.817 50.000 0.00 0.00 0.00 3.67
3272 3826 4.621274 GCCCATTGCACAATGTTAGAACAT 60.621 41.667 19.16 1.96 44.97 2.71
3274 3828 3.253230 GCCCATTGCACAATGTTAGAAC 58.747 45.455 19.16 2.10 44.97 3.01
3289 3843 1.655114 GGTCATAGGTGGGGCCCATT 61.655 60.000 31.48 22.31 35.28 3.16
3299 3853 4.955811 TTGAATGCGATAGGTCATAGGT 57.044 40.909 0.00 0.00 0.00 3.08
3300 3854 6.808008 AAATTGAATGCGATAGGTCATAGG 57.192 37.500 0.00 0.00 0.00 2.57
3301 3855 7.011773 CGAAAATTGAATGCGATAGGTCATAG 58.988 38.462 0.00 0.00 0.00 2.23
3302 3856 6.481976 ACGAAAATTGAATGCGATAGGTCATA 59.518 34.615 0.00 0.00 0.00 2.15
3303 3857 5.296780 ACGAAAATTGAATGCGATAGGTCAT 59.703 36.000 0.00 0.00 0.00 3.06
3304 3858 4.634004 ACGAAAATTGAATGCGATAGGTCA 59.366 37.500 0.00 0.00 0.00 4.02
3305 3859 5.156804 ACGAAAATTGAATGCGATAGGTC 57.843 39.130 0.00 0.00 0.00 3.85
3317 3871 6.310956 CCACACGGTTAGTATACGAAAATTGA 59.689 38.462 0.00 0.00 0.00 2.57
3372 3926 7.417612 GGTCCATAGCACACAGTTAAATATTG 58.582 38.462 0.00 0.00 0.00 1.90
3382 3936 0.179000 GAGGGGTCCATAGCACACAG 59.821 60.000 0.00 0.00 0.00 3.66
3404 3958 0.460459 TTTTCCAGACGTGTGTGCGA 60.460 50.000 12.16 0.00 35.59 5.10
3413 3967 2.536761 TGGTACACCTTTTCCAGACG 57.463 50.000 0.00 0.00 36.82 4.18
3427 3981 3.290948 TGATTAAGGGTGCCATGGTAC 57.709 47.619 23.56 23.56 0.00 3.34
3428 3982 4.534647 ATTGATTAAGGGTGCCATGGTA 57.465 40.909 14.67 5.86 0.00 3.25
3429 3983 2.917713 TTGATTAAGGGTGCCATGGT 57.082 45.000 14.67 0.00 0.00 3.55
3442 3996 4.006989 ACGTGCTTTGCCTGTATTGATTA 58.993 39.130 0.00 0.00 0.00 1.75
3453 4007 0.248296 TCGAAAACACGTGCTTTGCC 60.248 50.000 20.80 7.27 34.70 4.52
3473 4027 2.699954 ACTCCGAATCACACATGGTTC 58.300 47.619 0.00 0.00 41.82 3.62
3475 4029 2.813754 CAAACTCCGAATCACACATGGT 59.186 45.455 0.00 0.00 0.00 3.55
3478 4032 3.502211 GGTTCAAACTCCGAATCACACAT 59.498 43.478 0.00 0.00 0.00 3.21
3492 4046 2.324860 GCCTATGCAAACGGTTCAAAC 58.675 47.619 0.00 0.00 37.47 2.93
3495 4049 0.963355 GGGCCTATGCAAACGGTTCA 60.963 55.000 0.84 0.00 40.13 3.18
3496 4050 1.807226 GGGCCTATGCAAACGGTTC 59.193 57.895 0.84 0.00 40.13 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.