Multiple sequence alignment - TraesCS2A01G069700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G069700 chr2A 100.000 2870 0 0 1 2870 30566569 30569438 0.000000e+00 5301.0
1 TraesCS2A01G069700 chr2A 82.593 1350 172 39 1117 2443 677039343 677038034 0.000000e+00 1133.0
2 TraesCS2A01G069700 chr2A 85.249 1105 135 17 1121 2218 677368472 677367389 0.000000e+00 1112.0
3 TraesCS2A01G069700 chr2A 82.551 980 147 20 1136 2104 677215000 677214034 0.000000e+00 841.0
4 TraesCS2A01G069700 chr2A 100.000 146 0 0 3184 3329 30569752 30569897 1.520000e-68 270.0
5 TraesCS2A01G069700 chr2D 92.069 1803 81 16 432 2202 28762289 28764061 0.000000e+00 2481.0
6 TraesCS2A01G069700 chr2D 83.213 1245 152 42 1136 2348 533029822 533028603 0.000000e+00 1088.0
7 TraesCS2A01G069700 chr2D 79.731 1633 205 70 1136 2719 532499745 532498190 0.000000e+00 1066.0
8 TraesCS2A01G069700 chr2D 92.941 425 21 8 1 420 28761509 28761929 7.900000e-171 610.0
9 TraesCS2A01G069700 chr2D 89.630 135 10 2 2734 2868 28765682 28765812 5.710000e-38 169.0
10 TraesCS2A01G069700 chr2D 84.884 172 9 5 2446 2606 28764071 28764236 1.240000e-34 158.0
11 TraesCS2A01G069700 chr2D 83.505 97 7 3 2623 2719 28765524 28765611 7.650000e-12 82.4
12 TraesCS2A01G069700 chr2B 81.875 1269 163 46 1121 2349 632513367 632512126 0.000000e+00 1007.0
13 TraesCS2A01G069700 chrUn 82.711 1151 168 22 1117 2255 183931609 183932740 0.000000e+00 994.0
14 TraesCS2A01G069700 chrUn 82.522 1150 172 21 1117 2255 25995316 25994185 0.000000e+00 983.0
15 TraesCS2A01G069700 chrUn 82.435 1150 173 21 1117 2255 283940063 283938932 0.000000e+00 977.0
16 TraesCS2A01G069700 chrUn 81.503 692 104 18 1117 1799 26107264 26106588 6.280000e-152 547.0
17 TraesCS2A01G069700 chr5A 83.555 1052 127 30 1160 2191 356594458 356593433 0.000000e+00 942.0
18 TraesCS2A01G069700 chr5A 78.974 390 67 11 111 491 363863704 363863321 5.510000e-63 252.0
19 TraesCS2A01G069700 chr5B 82.194 1112 144 30 1129 2191 304655404 304654298 0.000000e+00 907.0
20 TraesCS2A01G069700 chr3A 87.841 403 45 3 1 401 212745275 212744875 1.400000e-128 470.0
21 TraesCS2A01G069700 chr3A 88.112 143 15 2 1 142 555404829 555404688 5.710000e-38 169.0
22 TraesCS2A01G069700 chr1A 87.841 403 45 3 1 401 439689188 439688788 1.400000e-128 470.0
23 TraesCS2A01G069700 chr1A 87.871 404 44 5 1 401 515286786 515286385 1.400000e-128 470.0
24 TraesCS2A01G069700 chr6A 87.376 404 45 6 1 401 158070743 158071143 3.030000e-125 459.0
25 TraesCS2A01G069700 chr6A 80.726 358 49 16 111 453 36705923 36706275 9.160000e-66 261.0
26 TraesCS2A01G069700 chr3D 85.445 371 48 5 108 476 95569909 95570275 6.740000e-102 381.0
27 TraesCS2A01G069700 chr3D 89.286 112 9 3 1 111 95569283 95569392 1.610000e-28 137.0
28 TraesCS2A01G069700 chr7B 80.226 354 53 14 111 453 99997469 99997816 1.980000e-62 250.0
29 TraesCS2A01G069700 chr7D 86.139 101 13 1 3229 3328 588419366 588419466 1.260000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G069700 chr2A 30566569 30569897 3328 False 2785.50 5301 100.0000 1 3329 2 chr2A.!!$F1 3328
1 TraesCS2A01G069700 chr2A 677038034 677039343 1309 True 1133.00 1133 82.5930 1117 2443 1 chr2A.!!$R1 1326
2 TraesCS2A01G069700 chr2A 677367389 677368472 1083 True 1112.00 1112 85.2490 1121 2218 1 chr2A.!!$R3 1097
3 TraesCS2A01G069700 chr2A 677214034 677215000 966 True 841.00 841 82.5510 1136 2104 1 chr2A.!!$R2 968
4 TraesCS2A01G069700 chr2D 533028603 533029822 1219 True 1088.00 1088 83.2130 1136 2348 1 chr2D.!!$R2 1212
5 TraesCS2A01G069700 chr2D 532498190 532499745 1555 True 1066.00 1066 79.7310 1136 2719 1 chr2D.!!$R1 1583
6 TraesCS2A01G069700 chr2D 28761509 28765812 4303 False 700.08 2481 88.6058 1 2868 5 chr2D.!!$F1 2867
7 TraesCS2A01G069700 chr2B 632512126 632513367 1241 True 1007.00 1007 81.8750 1121 2349 1 chr2B.!!$R1 1228
8 TraesCS2A01G069700 chrUn 183931609 183932740 1131 False 994.00 994 82.7110 1117 2255 1 chrUn.!!$F1 1138
9 TraesCS2A01G069700 chrUn 25994185 25995316 1131 True 983.00 983 82.5220 1117 2255 1 chrUn.!!$R1 1138
10 TraesCS2A01G069700 chrUn 283938932 283940063 1131 True 977.00 977 82.4350 1117 2255 1 chrUn.!!$R3 1138
11 TraesCS2A01G069700 chrUn 26106588 26107264 676 True 547.00 547 81.5030 1117 1799 1 chrUn.!!$R2 682
12 TraesCS2A01G069700 chr5A 356593433 356594458 1025 True 942.00 942 83.5550 1160 2191 1 chr5A.!!$R1 1031
13 TraesCS2A01G069700 chr5B 304654298 304655404 1106 True 907.00 907 82.1940 1129 2191 1 chr5B.!!$R1 1062
14 TraesCS2A01G069700 chr3D 95569283 95570275 992 False 259.00 381 87.3655 1 476 2 chr3D.!!$F1 475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 1501 0.098728 ATTCGCCAAACTGTATGCGC 59.901 50.0 0.0 0.0 46.14 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2428 3423 0.108207 GGAGCCATGGACTGATGAGG 59.892 60.0 18.4 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 671 7.593875 TCCAGTTTGTGAAAATGTTTGAAAG 57.406 32.000 0.00 0.00 34.87 2.62
154 677 5.277825 TGTGAAAATGTTTGAAAGCGTAGG 58.722 37.500 0.00 0.00 0.00 3.18
276 802 6.814506 AATTGATCTTGTTCTGAAGGTCTG 57.185 37.500 0.00 0.00 34.61 3.51
284 810 1.059098 TCTGAAGGTCTGCACACCAT 58.941 50.000 14.07 0.37 39.16 3.55
400 927 6.210584 TGTTCAGTGTATGTGGTGAGAGAATA 59.789 38.462 0.00 0.00 0.00 1.75
413 940 3.875134 TGAGAGAATACATGCATGCACTG 59.125 43.478 25.37 22.70 0.00 3.66
430 957 1.190643 CTGTTCTCTCCACTCCCTCC 58.809 60.000 0.00 0.00 0.00 4.30
435 1309 0.338120 CTCTCCACTCCCTCCCTCTT 59.662 60.000 0.00 0.00 0.00 2.85
448 1322 3.516615 CTCCCTCTTCTCTGTAAAAGCG 58.483 50.000 0.00 0.00 0.00 4.68
456 1330 1.461127 CTCTGTAAAAGCGGACACTGC 59.539 52.381 0.00 0.00 0.00 4.40
458 1332 0.887387 TGTAAAAGCGGACACTGCCC 60.887 55.000 0.00 0.00 0.00 5.36
466 1340 3.543884 GGACACTGCCCGATACAAA 57.456 52.632 0.00 0.00 0.00 2.83
471 1345 3.531538 ACACTGCCCGATACAAATACAG 58.468 45.455 0.00 0.00 0.00 2.74
532 1406 7.867445 AAAGAAATTGTATAAAACCTGCACG 57.133 32.000 0.00 0.00 0.00 5.34
544 1418 2.625737 ACCTGCACGAATCTTGATGAG 58.374 47.619 0.00 0.00 0.00 2.90
549 1423 2.606725 GCACGAATCTTGATGAGACTGG 59.393 50.000 0.00 0.00 37.17 4.00
550 1424 2.606725 CACGAATCTTGATGAGACTGGC 59.393 50.000 0.00 0.00 37.17 4.85
551 1425 1.857217 CGAATCTTGATGAGACTGGCG 59.143 52.381 0.00 0.00 37.17 5.69
552 1426 2.480244 CGAATCTTGATGAGACTGGCGA 60.480 50.000 0.00 0.00 37.17 5.54
553 1427 3.525537 GAATCTTGATGAGACTGGCGAA 58.474 45.455 0.00 0.00 37.17 4.70
554 1428 2.370281 TCTTGATGAGACTGGCGAAC 57.630 50.000 0.00 0.00 0.00 3.95
570 1444 2.827959 GAACGAACGGTGGATTGCGC 62.828 60.000 0.00 0.00 0.00 6.09
571 1445 3.418913 CGAACGGTGGATTGCGCA 61.419 61.111 5.66 5.66 0.00 6.09
572 1446 2.749865 CGAACGGTGGATTGCGCAT 61.750 57.895 12.75 0.40 0.00 4.73
573 1447 1.226379 GAACGGTGGATTGCGCATG 60.226 57.895 12.75 0.00 0.00 4.06
619 1494 7.217447 CGGTAAATTTACTAATTCGCCAAACTG 59.783 37.037 23.89 1.15 32.85 3.16
626 1501 0.098728 ATTCGCCAAACTGTATGCGC 59.901 50.000 0.00 0.00 46.14 6.09
689 1564 2.475200 CCGATTCGGCCAATTTCTTC 57.525 50.000 12.95 0.00 41.17 2.87
732 1607 1.844003 CGTGTGCGACGGTATATGC 59.156 57.895 0.00 0.00 44.85 3.14
737 1612 1.281566 TGCGACGGTATATGCATGCG 61.282 55.000 14.09 0.00 31.31 4.73
757 1632 3.049674 CGTGTTGCGGCACCATCT 61.050 61.111 2.85 0.00 36.08 2.90
832 1707 2.502080 GTGGCGACGACTGACGAG 60.502 66.667 0.65 1.39 45.77 4.18
840 1715 1.285950 CGACTGACGAGAGCAACCA 59.714 57.895 0.00 0.00 45.77 3.67
859 1734 2.030185 CCACCGTCGAGAAGAAGAAGAA 60.030 50.000 0.00 0.00 0.00 2.52
861 1736 3.058155 CACCGTCGAGAAGAAGAAGAAGA 60.058 47.826 0.00 0.00 0.00 2.87
862 1737 3.759618 ACCGTCGAGAAGAAGAAGAAGAT 59.240 43.478 0.00 0.00 0.00 2.40
863 1738 4.942483 ACCGTCGAGAAGAAGAAGAAGATA 59.058 41.667 0.00 0.00 0.00 1.98
906 1781 1.763545 GGTCTCCCTCCCAGTCAATAC 59.236 57.143 0.00 0.00 0.00 1.89
907 1782 1.409427 GTCTCCCTCCCAGTCAATACG 59.591 57.143 0.00 0.00 0.00 3.06
908 1783 1.006758 TCTCCCTCCCAGTCAATACGT 59.993 52.381 0.00 0.00 0.00 3.57
909 1784 1.831736 CTCCCTCCCAGTCAATACGTT 59.168 52.381 0.00 0.00 0.00 3.99
1008 1905 2.832672 GCATGGTTGCTAGTTGCTAC 57.167 50.000 2.85 2.85 45.77 3.58
1009 1906 1.062587 GCATGGTTGCTAGTTGCTACG 59.937 52.381 5.27 0.00 45.84 3.51
1048 1945 3.736100 CGCCAACCATCGCAAGCA 61.736 61.111 0.00 0.00 37.18 3.91
1052 1949 0.314935 CCAACCATCGCAAGCAAAGT 59.685 50.000 0.00 0.00 37.18 2.66
1053 1950 1.539388 CCAACCATCGCAAGCAAAGTA 59.461 47.619 0.00 0.00 37.18 2.24
1054 1951 2.414559 CCAACCATCGCAAGCAAAGTAG 60.415 50.000 0.00 0.00 37.18 2.57
1055 1952 0.804989 ACCATCGCAAGCAAAGTAGC 59.195 50.000 0.00 0.00 37.18 3.58
1074 1971 3.368903 GCTAGCTAGCTAATGGCGCCT 62.369 57.143 33.71 11.31 45.62 5.52
1081 1978 1.291877 GCTAATGGCGCCTATCCACG 61.292 60.000 29.70 10.38 36.26 4.94
1503 2435 2.069273 CAAGGTCACTGCGGTAAGAAG 58.931 52.381 0.00 0.00 0.00 2.85
1504 2436 1.629043 AGGTCACTGCGGTAAGAAGA 58.371 50.000 0.00 0.00 0.00 2.87
1517 2452 2.797177 AAGAAGAATCTGCACCTCCC 57.203 50.000 0.00 0.00 35.59 4.30
1518 2453 0.539051 AGAAGAATCTGCACCTCCCG 59.461 55.000 0.00 0.00 33.59 5.14
1519 2454 0.537188 GAAGAATCTGCACCTCCCGA 59.463 55.000 0.00 0.00 0.00 5.14
1552 2507 3.545703 AGCATATACCACAGGACAAAGC 58.454 45.455 0.00 0.00 0.00 3.51
1576 2543 5.976458 TGGCAAATGAATAAGGGAATGTTC 58.024 37.500 0.00 0.00 0.00 3.18
1732 2713 0.466922 AACAGCTGCAAGAGTGGCTT 60.467 50.000 15.27 0.00 37.29 4.35
1794 2775 2.037367 AGACGGAGGCAGCCTACA 59.963 61.111 24.49 0.00 33.03 2.74
1988 2975 4.415332 AGGAGCGGCGTGTACGTG 62.415 66.667 9.37 0.82 42.22 4.49
2169 3162 4.133796 GCATTGCCACCTTCGCCC 62.134 66.667 0.00 0.00 0.00 6.13
2170 3163 3.814268 CATTGCCACCTTCGCCCG 61.814 66.667 0.00 0.00 0.00 6.13
2219 3214 4.803098 ACCAGTACAACTACATCAGTCC 57.197 45.455 0.00 0.00 36.04 3.85
2220 3215 4.157246 ACCAGTACAACTACATCAGTCCA 58.843 43.478 0.00 0.00 36.04 4.02
2221 3216 4.777896 ACCAGTACAACTACATCAGTCCAT 59.222 41.667 0.00 0.00 36.04 3.41
2222 3217 5.111989 CCAGTACAACTACATCAGTCCATG 58.888 45.833 0.00 0.00 36.04 3.66
2223 3218 4.568359 CAGTACAACTACATCAGTCCATGC 59.432 45.833 0.00 0.00 36.04 4.06
2224 3219 3.701205 ACAACTACATCAGTCCATGCA 57.299 42.857 0.00 0.00 36.04 3.96
2225 3220 4.226427 ACAACTACATCAGTCCATGCAT 57.774 40.909 0.00 0.00 36.04 3.96
2226 3221 3.943381 ACAACTACATCAGTCCATGCATG 59.057 43.478 20.19 20.19 36.04 4.06
2227 3222 4.193865 CAACTACATCAGTCCATGCATGA 58.806 43.478 28.31 9.01 36.04 3.07
2228 3223 4.701651 ACTACATCAGTCCATGCATGAT 57.298 40.909 28.31 11.16 34.02 2.45
2230 3225 2.706555 CATCAGTCCATGCATGATGC 57.293 50.000 28.31 11.12 42.60 3.91
2240 3235 2.598045 GCATGATGCATCGTCGAGT 58.402 52.632 18.67 0.00 44.26 4.18
2241 3236 1.770957 GCATGATGCATCGTCGAGTA 58.229 50.000 18.67 0.43 44.26 2.59
2242 3237 1.453524 GCATGATGCATCGTCGAGTAC 59.546 52.381 18.67 1.30 44.26 2.73
2243 3238 2.860194 GCATGATGCATCGTCGAGTACT 60.860 50.000 18.67 0.00 44.26 2.73
2244 3239 3.609409 GCATGATGCATCGTCGAGTACTA 60.609 47.826 18.67 0.00 44.26 1.82
2245 3240 4.727475 CATGATGCATCGTCGAGTACTAT 58.273 43.478 18.67 0.78 0.00 2.12
2246 3241 4.147219 TGATGCATCGTCGAGTACTATG 57.853 45.455 21.34 0.00 35.03 2.23
2247 3242 3.058224 TGATGCATCGTCGAGTACTATGG 60.058 47.826 21.34 0.00 33.06 2.74
2248 3243 2.294979 TGCATCGTCGAGTACTATGGT 58.705 47.619 0.00 0.00 33.06 3.55
2249 3244 2.686405 TGCATCGTCGAGTACTATGGTT 59.314 45.455 0.00 0.00 33.06 3.67
2250 3245 3.129813 TGCATCGTCGAGTACTATGGTTT 59.870 43.478 0.00 0.00 33.06 3.27
2251 3246 4.336153 TGCATCGTCGAGTACTATGGTTTA 59.664 41.667 0.00 0.00 33.06 2.01
2252 3247 5.009310 TGCATCGTCGAGTACTATGGTTTAT 59.991 40.000 0.00 0.00 33.06 1.40
2253 3248 5.568296 GCATCGTCGAGTACTATGGTTTATC 59.432 44.000 0.00 0.00 33.06 1.75
2254 3249 6.665465 CATCGTCGAGTACTATGGTTTATCA 58.335 40.000 0.00 0.00 29.69 2.15
2255 3250 6.682423 TCGTCGAGTACTATGGTTTATCAA 57.318 37.500 0.00 0.00 0.00 2.57
2256 3251 6.489675 TCGTCGAGTACTATGGTTTATCAAC 58.510 40.000 0.00 0.00 0.00 3.18
2257 3252 6.317140 TCGTCGAGTACTATGGTTTATCAACT 59.683 38.462 0.00 0.00 32.90 3.16
2258 3253 7.495606 TCGTCGAGTACTATGGTTTATCAACTA 59.504 37.037 0.00 0.00 32.90 2.24
2259 3254 8.124823 CGTCGAGTACTATGGTTTATCAACTAA 58.875 37.037 0.00 0.00 32.90 2.24
2260 3255 9.448294 GTCGAGTACTATGGTTTATCAACTAAG 57.552 37.037 0.00 0.00 32.90 2.18
2261 3256 9.399797 TCGAGTACTATGGTTTATCAACTAAGA 57.600 33.333 0.00 0.00 32.90 2.10
2267 3262 9.314321 ACTATGGTTTATCAACTAAGATTGACG 57.686 33.333 0.00 0.00 41.29 4.35
2268 3263 9.314321 CTATGGTTTATCAACTAAGATTGACGT 57.686 33.333 0.00 0.00 41.29 4.34
2270 3265 9.832445 ATGGTTTATCAACTAAGATTGACGTAT 57.168 29.630 0.00 0.00 41.29 3.06
2277 3272 8.510243 TCAACTAAGATTGACGTATAGTACCA 57.490 34.615 0.00 0.00 33.62 3.25
2278 3273 9.128404 TCAACTAAGATTGACGTATAGTACCAT 57.872 33.333 0.00 0.00 33.62 3.55
2291 3286 2.830772 GTACCATACGTACGACTGCA 57.169 50.000 24.41 6.31 38.17 4.41
2292 3287 2.713011 GTACCATACGTACGACTGCAG 58.287 52.381 24.41 13.48 38.17 4.41
2293 3288 1.171308 ACCATACGTACGACTGCAGT 58.829 50.000 21.88 21.88 0.00 4.40
2294 3289 2.358957 ACCATACGTACGACTGCAGTA 58.641 47.619 24.41 0.32 0.00 2.74
2295 3290 2.096496 ACCATACGTACGACTGCAGTAC 59.904 50.000 24.41 13.86 40.59 2.73
2296 3291 2.096335 CCATACGTACGACTGCAGTACA 59.904 50.000 24.41 4.75 43.24 2.90
2297 3292 2.880822 TACGTACGACTGCAGTACAC 57.119 50.000 24.41 16.11 43.24 2.90
2298 3293 0.110509 ACGTACGACTGCAGTACACG 60.111 55.000 30.37 30.37 43.24 4.49
2299 3294 0.164432 CGTACGACTGCAGTACACGA 59.836 55.000 29.30 14.43 43.24 4.35
2300 3295 1.599992 GTACGACTGCAGTACACGAC 58.400 55.000 27.14 18.02 42.77 4.34
2301 3296 0.164432 TACGACTGCAGTACACGACG 59.836 55.000 27.14 22.84 0.00 5.12
2302 3297 1.082300 CGACTGCAGTACACGACGT 60.082 57.895 21.73 0.00 0.00 4.34
2303 3298 0.164432 CGACTGCAGTACACGACGTA 59.836 55.000 21.73 0.00 0.00 3.57
2304 3299 1.201998 CGACTGCAGTACACGACGTAT 60.202 52.381 21.73 0.00 31.20 3.06
2305 3300 2.029606 CGACTGCAGTACACGACGTATA 59.970 50.000 21.73 0.00 31.20 1.47
2306 3301 3.302935 CGACTGCAGTACACGACGTATAT 60.303 47.826 21.73 0.00 31.20 0.86
2307 3302 4.084900 CGACTGCAGTACACGACGTATATA 60.085 45.833 21.73 0.00 31.20 0.86
2308 3303 5.389202 CGACTGCAGTACACGACGTATATAT 60.389 44.000 21.73 0.00 31.20 0.86
2309 3304 5.686834 ACTGCAGTACACGACGTATATATG 58.313 41.667 20.16 0.12 31.20 1.78
2310 3305 5.467735 ACTGCAGTACACGACGTATATATGA 59.532 40.000 20.16 0.00 31.20 2.15
2311 3306 6.017687 ACTGCAGTACACGACGTATATATGAA 60.018 38.462 20.16 0.00 31.20 2.57
2312 3307 6.905578 TGCAGTACACGACGTATATATGAAT 58.094 36.000 8.98 0.00 31.20 2.57
2313 3308 7.364970 TGCAGTACACGACGTATATATGAATT 58.635 34.615 8.98 0.00 31.20 2.17
2314 3309 7.863877 TGCAGTACACGACGTATATATGAATTT 59.136 33.333 8.98 0.00 31.20 1.82
2315 3310 8.154038 GCAGTACACGACGTATATATGAATTTG 58.846 37.037 8.98 3.31 31.20 2.32
2316 3311 9.177304 CAGTACACGACGTATATATGAATTTGT 57.823 33.333 8.98 8.21 31.20 2.83
2317 3312 9.740239 AGTACACGACGTATATATGAATTTGTT 57.260 29.630 8.98 0.00 31.20 2.83
2338 3333 9.558396 TTTGTTTTTCAAATAAAGCATGGATCT 57.442 25.926 0.00 0.00 40.56 2.75
2339 3334 9.558396 TTGTTTTTCAAATAAAGCATGGATCTT 57.442 25.926 0.00 0.00 32.64 2.40
2340 3335 9.206870 TGTTTTTCAAATAAAGCATGGATCTTC 57.793 29.630 0.00 0.00 0.00 2.87
2341 3336 8.375465 GTTTTTCAAATAAAGCATGGATCTTCG 58.625 33.333 0.00 0.00 0.00 3.79
2342 3337 6.757897 TTCAAATAAAGCATGGATCTTCGT 57.242 33.333 0.00 0.00 0.00 3.85
2343 3338 7.857734 TTCAAATAAAGCATGGATCTTCGTA 57.142 32.000 0.00 0.00 0.00 3.43
2344 3339 7.482654 TCAAATAAAGCATGGATCTTCGTAG 57.517 36.000 0.00 0.00 0.00 3.51
2345 3340 7.272244 TCAAATAAAGCATGGATCTTCGTAGA 58.728 34.615 0.00 0.00 34.21 2.59
2346 3341 7.768582 TCAAATAAAGCATGGATCTTCGTAGAA 59.231 33.333 0.00 0.00 45.90 2.10
2347 3342 8.397906 CAAATAAAGCATGGATCTTCGTAGAAA 58.602 33.333 0.00 0.00 45.90 2.52
2348 3343 7.721286 ATAAAGCATGGATCTTCGTAGAAAG 57.279 36.000 0.00 0.00 45.90 2.62
2349 3344 4.744795 AGCATGGATCTTCGTAGAAAGT 57.255 40.909 0.00 0.00 45.90 2.66
2350 3345 5.854010 AGCATGGATCTTCGTAGAAAGTA 57.146 39.130 0.00 0.00 45.90 2.24
2351 3346 5.593010 AGCATGGATCTTCGTAGAAAGTAC 58.407 41.667 0.00 0.00 45.90 2.73
2352 3347 5.127194 AGCATGGATCTTCGTAGAAAGTACA 59.873 40.000 0.00 0.00 45.90 2.90
2353 3348 5.460419 GCATGGATCTTCGTAGAAAGTACAG 59.540 44.000 0.00 0.00 45.90 2.74
2354 3349 6.565234 CATGGATCTTCGTAGAAAGTACAGT 58.435 40.000 0.00 0.00 45.90 3.55
2355 3350 7.681304 GCATGGATCTTCGTAGAAAGTACAGTA 60.681 40.741 0.00 0.00 45.90 2.74
2356 3351 7.317842 TGGATCTTCGTAGAAAGTACAGTAG 57.682 40.000 0.00 0.00 45.90 2.57
2357 3352 7.108194 TGGATCTTCGTAGAAAGTACAGTAGA 58.892 38.462 0.00 0.00 45.90 2.59
2358 3353 7.609146 TGGATCTTCGTAGAAAGTACAGTAGAA 59.391 37.037 0.00 0.00 45.90 2.10
2359 3354 8.457261 GGATCTTCGTAGAAAGTACAGTAGAAA 58.543 37.037 0.00 0.00 45.90 2.52
2360 3355 9.276397 GATCTTCGTAGAAAGTACAGTAGAAAC 57.724 37.037 0.00 0.00 45.90 2.78
2361 3356 7.293745 TCTTCGTAGAAAGTACAGTAGAAACG 58.706 38.462 0.00 0.00 45.90 3.60
2362 3357 6.785488 TCGTAGAAAGTACAGTAGAAACGA 57.215 37.500 0.00 0.00 33.73 3.85
2363 3358 7.369803 TCGTAGAAAGTACAGTAGAAACGAT 57.630 36.000 0.00 0.00 31.47 3.73
2364 3359 7.459486 TCGTAGAAAGTACAGTAGAAACGATC 58.541 38.462 0.00 0.00 31.47 3.69
2365 3360 6.686253 CGTAGAAAGTACAGTAGAAACGATCC 59.314 42.308 0.00 0.00 0.00 3.36
2366 3361 6.585695 AGAAAGTACAGTAGAAACGATCCA 57.414 37.500 0.00 0.00 0.00 3.41
2367 3362 7.171630 AGAAAGTACAGTAGAAACGATCCAT 57.828 36.000 0.00 0.00 0.00 3.41
2368 3363 7.612677 AGAAAGTACAGTAGAAACGATCCATT 58.387 34.615 0.00 0.00 0.00 3.16
2369 3364 8.095169 AGAAAGTACAGTAGAAACGATCCATTT 58.905 33.333 0.00 0.00 0.00 2.32
2370 3365 7.596749 AAGTACAGTAGAAACGATCCATTTG 57.403 36.000 0.00 0.00 0.00 2.32
2371 3366 4.946784 ACAGTAGAAACGATCCATTTGC 57.053 40.909 0.00 0.00 0.00 3.68
2372 3367 3.689649 ACAGTAGAAACGATCCATTTGCC 59.310 43.478 0.00 0.00 0.00 4.52
2373 3368 3.065371 CAGTAGAAACGATCCATTTGCCC 59.935 47.826 0.00 0.00 0.00 5.36
2374 3369 2.214376 AGAAACGATCCATTTGCCCA 57.786 45.000 0.00 0.00 0.00 5.36
2375 3370 2.738743 AGAAACGATCCATTTGCCCAT 58.261 42.857 0.00 0.00 0.00 4.00
2376 3371 2.428171 AGAAACGATCCATTTGCCCATG 59.572 45.455 0.00 0.00 0.00 3.66
2377 3372 1.851304 AACGATCCATTTGCCCATGT 58.149 45.000 0.00 0.00 0.00 3.21
2378 3373 2.727123 ACGATCCATTTGCCCATGTA 57.273 45.000 0.00 0.00 0.00 2.29
2379 3374 3.011566 ACGATCCATTTGCCCATGTAA 57.988 42.857 0.00 0.00 0.00 2.41
2380 3375 3.565307 ACGATCCATTTGCCCATGTAAT 58.435 40.909 0.00 0.00 0.00 1.89
2381 3376 4.724399 ACGATCCATTTGCCCATGTAATA 58.276 39.130 0.00 0.00 0.00 0.98
2382 3377 4.761739 ACGATCCATTTGCCCATGTAATAG 59.238 41.667 0.00 0.00 0.00 1.73
2383 3378 4.379813 CGATCCATTTGCCCATGTAATAGC 60.380 45.833 0.00 0.00 0.00 2.97
2384 3379 3.908476 TCCATTTGCCCATGTAATAGCA 58.092 40.909 0.00 0.00 33.51 3.49
2385 3380 3.890756 TCCATTTGCCCATGTAATAGCAG 59.109 43.478 0.00 0.00 36.34 4.24
2386 3381 3.553508 CCATTTGCCCATGTAATAGCAGC 60.554 47.826 0.00 0.00 36.34 5.25
2387 3382 2.433662 TTGCCCATGTAATAGCAGCA 57.566 45.000 0.00 0.00 36.34 4.41
2388 3383 2.662535 TGCCCATGTAATAGCAGCAT 57.337 45.000 0.00 0.00 30.75 3.79
2389 3384 3.786368 TGCCCATGTAATAGCAGCATA 57.214 42.857 0.00 0.00 30.75 3.14
2390 3385 4.097551 TGCCCATGTAATAGCAGCATAA 57.902 40.909 0.00 0.00 30.75 1.90
2391 3386 4.074259 TGCCCATGTAATAGCAGCATAAG 58.926 43.478 0.00 0.00 30.75 1.73
2392 3387 4.202451 TGCCCATGTAATAGCAGCATAAGA 60.202 41.667 0.00 0.00 30.75 2.10
2393 3388 4.946157 GCCCATGTAATAGCAGCATAAGAT 59.054 41.667 0.00 0.00 0.00 2.40
2394 3389 5.416952 GCCCATGTAATAGCAGCATAAGATT 59.583 40.000 0.00 0.00 0.00 2.40
2395 3390 6.624423 GCCCATGTAATAGCAGCATAAGATTG 60.624 42.308 0.00 0.00 0.00 2.67
2396 3391 6.432162 CCCATGTAATAGCAGCATAAGATTGT 59.568 38.462 0.00 0.00 0.00 2.71
2397 3392 7.607607 CCCATGTAATAGCAGCATAAGATTGTA 59.392 37.037 0.00 0.00 0.00 2.41
2398 3393 9.002600 CCATGTAATAGCAGCATAAGATTGTAA 57.997 33.333 0.00 0.00 0.00 2.41
2434 3429 8.723942 ATGAAAATGAACACTAGTACCTCATC 57.276 34.615 11.78 4.56 0.00 2.92
2435 3430 7.676004 TGAAAATGAACACTAGTACCTCATCA 58.324 34.615 11.78 6.43 0.00 3.07
2436 3431 7.819415 TGAAAATGAACACTAGTACCTCATCAG 59.181 37.037 11.78 0.00 0.00 2.90
2437 3432 6.859112 AATGAACACTAGTACCTCATCAGT 57.141 37.500 11.78 1.73 0.00 3.41
2438 3433 5.899120 TGAACACTAGTACCTCATCAGTC 57.101 43.478 0.00 0.00 0.00 3.51
2439 3434 4.705507 TGAACACTAGTACCTCATCAGTCC 59.294 45.833 0.00 0.00 0.00 3.85
2440 3435 4.317530 ACACTAGTACCTCATCAGTCCA 57.682 45.455 0.00 0.00 0.00 4.02
2441 3436 4.873010 ACACTAGTACCTCATCAGTCCAT 58.127 43.478 0.00 0.00 0.00 3.41
2442 3437 4.646945 ACACTAGTACCTCATCAGTCCATG 59.353 45.833 0.00 0.00 0.00 3.66
2443 3438 4.038522 CACTAGTACCTCATCAGTCCATGG 59.961 50.000 4.97 4.97 0.00 3.66
2444 3439 1.765314 AGTACCTCATCAGTCCATGGC 59.235 52.381 6.96 2.00 0.00 4.40
2481 3480 6.149640 TCGAGTATGGTTTATCAGCTAGCTAG 59.850 42.308 18.86 16.84 0.00 3.42
2511 3536 4.779819 GCAGCTGCAGTACAATGC 57.220 55.556 33.36 13.78 46.68 3.56
2528 3562 9.967346 AGTACAATGCATACGTATATATGGATC 57.033 33.333 7.96 3.29 41.27 3.36
2573 3808 3.814625 TGGAATGATGCGTTTGCCTATA 58.185 40.909 0.00 0.00 41.78 1.31
2574 3809 4.203226 TGGAATGATGCGTTTGCCTATAA 58.797 39.130 0.00 0.00 41.78 0.98
2575 3810 4.826733 TGGAATGATGCGTTTGCCTATAAT 59.173 37.500 0.00 0.00 41.78 1.28
2576 3811 6.000840 TGGAATGATGCGTTTGCCTATAATA 58.999 36.000 0.00 0.00 41.78 0.98
2577 3812 6.658816 TGGAATGATGCGTTTGCCTATAATAT 59.341 34.615 0.00 0.00 41.78 1.28
2675 5190 0.383231 CATGCCTCGCCTTTTCCATC 59.617 55.000 0.00 0.00 0.00 3.51
2676 5191 0.257039 ATGCCTCGCCTTTTCCATCT 59.743 50.000 0.00 0.00 0.00 2.90
2677 5192 0.038166 TGCCTCGCCTTTTCCATCTT 59.962 50.000 0.00 0.00 0.00 2.40
2678 5193 1.177401 GCCTCGCCTTTTCCATCTTT 58.823 50.000 0.00 0.00 0.00 2.52
2679 5194 1.546029 GCCTCGCCTTTTCCATCTTTT 59.454 47.619 0.00 0.00 0.00 2.27
2680 5195 2.416027 GCCTCGCCTTTTCCATCTTTTC 60.416 50.000 0.00 0.00 0.00 2.29
2681 5196 2.164422 CCTCGCCTTTTCCATCTTTTCC 59.836 50.000 0.00 0.00 0.00 3.13
2682 5197 2.819608 CTCGCCTTTTCCATCTTTTCCA 59.180 45.455 0.00 0.00 0.00 3.53
2683 5198 3.430453 TCGCCTTTTCCATCTTTTCCAT 58.570 40.909 0.00 0.00 0.00 3.41
2703 5218 0.458716 GCCCGTTCTTCTTCCTCTCG 60.459 60.000 0.00 0.00 0.00 4.04
2707 5222 2.611518 CGTTCTTCTTCCTCTCGCAAT 58.388 47.619 0.00 0.00 0.00 3.56
2719 5234 1.731709 TCTCGCAATCCGACACAAATG 59.268 47.619 0.00 0.00 41.89 2.32
2720 5235 1.731709 CTCGCAATCCGACACAAATGA 59.268 47.619 0.00 0.00 41.89 2.57
2721 5236 1.463056 TCGCAATCCGACACAAATGAC 59.537 47.619 0.00 0.00 41.89 3.06
2722 5237 1.196581 CGCAATCCGACACAAATGACA 59.803 47.619 0.00 0.00 40.02 3.58
2724 5239 3.637432 GCAATCCGACACAAATGACAAA 58.363 40.909 0.00 0.00 0.00 2.83
2725 5240 4.236935 GCAATCCGACACAAATGACAAAT 58.763 39.130 0.00 0.00 0.00 2.32
2726 5241 4.324402 GCAATCCGACACAAATGACAAATC 59.676 41.667 0.00 0.00 0.00 2.17
2727 5242 5.702865 CAATCCGACACAAATGACAAATCT 58.297 37.500 0.00 0.00 0.00 2.40
2729 5244 3.501828 TCCGACACAAATGACAAATCTGG 59.498 43.478 0.00 0.00 0.00 3.86
2730 5245 3.501828 CCGACACAAATGACAAATCTGGA 59.498 43.478 0.00 0.00 0.00 3.86
2732 5247 5.327091 CGACACAAATGACAAATCTGGATC 58.673 41.667 0.00 0.00 0.00 3.36
2739 5310 4.025040 TGACAAATCTGGATCAAGCAGT 57.975 40.909 0.00 0.00 0.00 4.40
2742 5313 3.005554 CAAATCTGGATCAAGCAGTCGT 58.994 45.455 0.00 0.00 0.00 4.34
2772 5343 0.884704 GAAGAAGCAACCGCCACTCA 60.885 55.000 0.00 0.00 39.83 3.41
2774 5345 2.594592 AAGCAACCGCCACTCACC 60.595 61.111 0.00 0.00 39.83 4.02
2775 5346 4.988598 AGCAACCGCCACTCACCG 62.989 66.667 0.00 0.00 39.83 4.94
2806 5377 1.271597 CCCATTATCTAGCTGCCCCAC 60.272 57.143 0.00 0.00 0.00 4.61
2811 5382 0.763652 ATCTAGCTGCCCCACTGATG 59.236 55.000 0.00 0.00 0.00 3.07
2827 5398 5.365605 CCACTGATGTATCTTAGGGGTGTTA 59.634 44.000 0.00 0.00 0.00 2.41
2828 5399 6.463049 CCACTGATGTATCTTAGGGGTGTTAG 60.463 46.154 0.00 0.00 0.00 2.34
2840 5411 0.958822 GGTGTTAGGGGTGCAAGTTG 59.041 55.000 0.00 0.00 0.00 3.16
2842 5413 0.825840 TGTTAGGGGTGCAAGTTGGC 60.826 55.000 4.75 0.00 0.00 4.52
2846 5417 4.966787 GGGTGCAAGTTGGCCGGA 62.967 66.667 5.05 0.00 0.00 5.14
2847 5418 2.909965 GGTGCAAGTTGGCCGGAA 60.910 61.111 5.05 0.00 0.00 4.30
2848 5419 2.494530 GGTGCAAGTTGGCCGGAAA 61.495 57.895 5.05 0.00 0.00 3.13
2869 5440 2.589798 AAAAATGATGCATGGCCGAG 57.410 45.000 2.46 0.00 0.00 4.63
3231 5802 2.435410 GGTGGAGGCCGGTTTACG 60.435 66.667 1.90 0.00 43.80 3.18
3232 5803 2.344872 GTGGAGGCCGGTTTACGT 59.655 61.111 1.90 0.00 42.24 3.57
3233 5804 2.030958 GTGGAGGCCGGTTTACGTG 61.031 63.158 1.90 0.00 42.24 4.49
3234 5805 2.435410 GGAGGCCGGTTTACGTGG 60.435 66.667 1.90 0.00 42.24 4.94
3235 5806 2.435410 GAGGCCGGTTTACGTGGG 60.435 66.667 1.90 0.00 42.24 4.61
3236 5807 3.963687 GAGGCCGGTTTACGTGGGG 62.964 68.421 1.90 0.00 42.24 4.96
3240 5811 4.685467 CGGTTTACGTGGGGCGGT 62.685 66.667 0.00 0.00 46.52 5.68
3241 5812 2.743538 GGTTTACGTGGGGCGGTC 60.744 66.667 0.00 0.00 46.52 4.79
3242 5813 3.113979 GTTTACGTGGGGCGGTCG 61.114 66.667 0.00 0.00 46.52 4.79
3243 5814 3.301554 TTTACGTGGGGCGGTCGA 61.302 61.111 0.00 0.00 46.52 4.20
3244 5815 3.285523 TTTACGTGGGGCGGTCGAG 62.286 63.158 0.00 0.00 46.52 4.04
3252 5823 3.387947 GGCGGTCGAGGGGAAGAA 61.388 66.667 0.00 0.00 0.00 2.52
3253 5824 2.184579 GCGGTCGAGGGGAAGAAG 59.815 66.667 0.00 0.00 0.00 2.85
3254 5825 2.348888 GCGGTCGAGGGGAAGAAGA 61.349 63.158 0.00 0.00 0.00 2.87
3255 5826 1.810532 CGGTCGAGGGGAAGAAGAG 59.189 63.158 0.00 0.00 0.00 2.85
3256 5827 0.680280 CGGTCGAGGGGAAGAAGAGA 60.680 60.000 0.00 0.00 0.00 3.10
3257 5828 1.558233 GGTCGAGGGGAAGAAGAGAA 58.442 55.000 0.00 0.00 0.00 2.87
3258 5829 1.205179 GGTCGAGGGGAAGAAGAGAAC 59.795 57.143 0.00 0.00 0.00 3.01
3259 5830 1.893801 GTCGAGGGGAAGAAGAGAACA 59.106 52.381 0.00 0.00 0.00 3.18
3260 5831 2.094442 GTCGAGGGGAAGAAGAGAACAG 60.094 54.545 0.00 0.00 0.00 3.16
3261 5832 1.205893 CGAGGGGAAGAAGAGAACAGG 59.794 57.143 0.00 0.00 0.00 4.00
3262 5833 2.261729 GAGGGGAAGAAGAGAACAGGT 58.738 52.381 0.00 0.00 0.00 4.00
3263 5834 3.442076 GAGGGGAAGAAGAGAACAGGTA 58.558 50.000 0.00 0.00 0.00 3.08
3264 5835 3.445987 AGGGGAAGAAGAGAACAGGTAG 58.554 50.000 0.00 0.00 0.00 3.18
3265 5836 2.093394 GGGGAAGAAGAGAACAGGTAGC 60.093 54.545 0.00 0.00 0.00 3.58
3266 5837 2.835156 GGGAAGAAGAGAACAGGTAGCT 59.165 50.000 0.00 0.00 0.00 3.32
3267 5838 3.368948 GGGAAGAAGAGAACAGGTAGCTG 60.369 52.174 20.16 20.16 0.00 4.24
3268 5839 3.368948 GGAAGAAGAGAACAGGTAGCTGG 60.369 52.174 24.84 8.17 0.00 4.85
3269 5840 2.183679 AGAAGAGAACAGGTAGCTGGG 58.816 52.381 24.84 2.21 0.00 4.45
3270 5841 0.615850 AAGAGAACAGGTAGCTGGGC 59.384 55.000 24.84 15.86 0.00 5.36
3271 5842 0.252467 AGAGAACAGGTAGCTGGGCT 60.252 55.000 24.84 19.92 43.41 5.19
3272 5843 0.107945 GAGAACAGGTAGCTGGGCTG 60.108 60.000 24.84 1.68 40.10 4.85
3273 5844 1.078143 GAACAGGTAGCTGGGCTGG 60.078 63.158 24.84 0.00 40.10 4.85
3274 5845 1.538876 AACAGGTAGCTGGGCTGGA 60.539 57.895 24.84 0.00 40.10 3.86
3275 5846 1.557269 AACAGGTAGCTGGGCTGGAG 61.557 60.000 24.84 0.00 40.10 3.86
3276 5847 2.366167 AGGTAGCTGGGCTGGAGG 60.366 66.667 0.00 0.00 40.10 4.30
3277 5848 2.689034 GGTAGCTGGGCTGGAGGT 60.689 66.667 0.00 0.00 40.10 3.85
3278 5849 2.301738 GGTAGCTGGGCTGGAGGTT 61.302 63.158 0.00 0.00 40.10 3.50
3279 5850 1.078143 GTAGCTGGGCTGGAGGTTG 60.078 63.158 0.00 0.00 40.10 3.77
3280 5851 1.229496 TAGCTGGGCTGGAGGTTGA 60.229 57.895 0.00 0.00 40.10 3.18
3281 5852 0.840288 TAGCTGGGCTGGAGGTTGAA 60.840 55.000 0.00 0.00 40.10 2.69
3282 5853 1.676967 GCTGGGCTGGAGGTTGAAG 60.677 63.158 0.00 0.00 0.00 3.02
3283 5854 2.069776 CTGGGCTGGAGGTTGAAGA 58.930 57.895 0.00 0.00 0.00 2.87
3284 5855 0.401738 CTGGGCTGGAGGTTGAAGAA 59.598 55.000 0.00 0.00 0.00 2.52
3285 5856 0.401738 TGGGCTGGAGGTTGAAGAAG 59.598 55.000 0.00 0.00 0.00 2.85
3286 5857 0.962855 GGGCTGGAGGTTGAAGAAGC 60.963 60.000 0.00 0.00 0.00 3.86
3287 5858 0.037447 GGCTGGAGGTTGAAGAAGCT 59.963 55.000 0.00 0.00 42.73 3.74
3288 5859 1.163554 GCTGGAGGTTGAAGAAGCTG 58.836 55.000 0.00 0.00 40.07 4.24
3289 5860 1.271054 GCTGGAGGTTGAAGAAGCTGA 60.271 52.381 0.00 0.00 40.07 4.26
3290 5861 2.617532 GCTGGAGGTTGAAGAAGCTGAT 60.618 50.000 0.00 0.00 40.07 2.90
3291 5862 3.269178 CTGGAGGTTGAAGAAGCTGATC 58.731 50.000 0.00 0.00 40.07 2.92
3292 5863 2.026822 TGGAGGTTGAAGAAGCTGATCC 60.027 50.000 0.00 0.00 40.07 3.36
3293 5864 2.275318 GAGGTTGAAGAAGCTGATCCG 58.725 52.381 0.00 0.00 40.07 4.18
3294 5865 1.902508 AGGTTGAAGAAGCTGATCCGA 59.097 47.619 0.00 0.00 38.51 4.55
3295 5866 2.003301 GGTTGAAGAAGCTGATCCGAC 58.997 52.381 0.00 0.00 0.00 4.79
3296 5867 2.003301 GTTGAAGAAGCTGATCCGACC 58.997 52.381 0.00 0.00 0.00 4.79
3297 5868 1.266178 TGAAGAAGCTGATCCGACCA 58.734 50.000 0.00 0.00 0.00 4.02
3298 5869 1.833630 TGAAGAAGCTGATCCGACCAT 59.166 47.619 0.00 0.00 0.00 3.55
3299 5870 2.159043 TGAAGAAGCTGATCCGACCATC 60.159 50.000 0.00 0.00 0.00 3.51
3300 5871 0.755686 AGAAGCTGATCCGACCATCC 59.244 55.000 0.00 0.00 0.00 3.51
3301 5872 0.465705 GAAGCTGATCCGACCATCCA 59.534 55.000 0.00 0.00 0.00 3.41
3302 5873 1.071385 GAAGCTGATCCGACCATCCAT 59.929 52.381 0.00 0.00 0.00 3.41
3303 5874 1.135094 AGCTGATCCGACCATCCATT 58.865 50.000 0.00 0.00 0.00 3.16
3304 5875 1.492176 AGCTGATCCGACCATCCATTT 59.508 47.619 0.00 0.00 0.00 2.32
3305 5876 2.092212 AGCTGATCCGACCATCCATTTT 60.092 45.455 0.00 0.00 0.00 1.82
3306 5877 2.033801 GCTGATCCGACCATCCATTTTG 59.966 50.000 0.00 0.00 0.00 2.44
3307 5878 2.023673 TGATCCGACCATCCATTTTGC 58.976 47.619 0.00 0.00 0.00 3.68
3308 5879 2.023673 GATCCGACCATCCATTTTGCA 58.976 47.619 0.00 0.00 0.00 4.08
3309 5880 2.142356 TCCGACCATCCATTTTGCAT 57.858 45.000 0.00 0.00 0.00 3.96
3310 5881 2.023673 TCCGACCATCCATTTTGCATC 58.976 47.619 0.00 0.00 0.00 3.91
3311 5882 1.067516 CCGACCATCCATTTTGCATCC 59.932 52.381 0.00 0.00 0.00 3.51
3312 5883 1.268692 CGACCATCCATTTTGCATCCG 60.269 52.381 0.00 0.00 0.00 4.18
3313 5884 2.023673 GACCATCCATTTTGCATCCGA 58.976 47.619 0.00 0.00 0.00 4.55
3314 5885 1.750778 ACCATCCATTTTGCATCCGAC 59.249 47.619 0.00 0.00 0.00 4.79
3315 5886 1.268692 CCATCCATTTTGCATCCGACG 60.269 52.381 0.00 0.00 0.00 5.12
3316 5887 1.024271 ATCCATTTTGCATCCGACGG 58.976 50.000 7.84 7.84 0.00 4.79
3317 5888 1.226660 CCATTTTGCATCCGACGGC 60.227 57.895 9.66 0.00 0.00 5.68
3318 5889 1.656818 CCATTTTGCATCCGACGGCT 61.657 55.000 9.66 0.00 0.00 5.52
3319 5890 0.171007 CATTTTGCATCCGACGGCTT 59.829 50.000 9.66 0.00 0.00 4.35
3320 5891 1.400142 CATTTTGCATCCGACGGCTTA 59.600 47.619 9.66 0.00 0.00 3.09
3321 5892 1.524848 TTTTGCATCCGACGGCTTAA 58.475 45.000 9.66 0.00 0.00 1.85
3322 5893 1.524848 TTTGCATCCGACGGCTTAAA 58.475 45.000 9.66 5.26 0.00 1.52
3323 5894 1.524848 TTGCATCCGACGGCTTAAAA 58.475 45.000 9.66 0.00 0.00 1.52
3324 5895 0.800012 TGCATCCGACGGCTTAAAAC 59.200 50.000 9.66 0.00 0.00 2.43
3325 5896 0.800012 GCATCCGACGGCTTAAAACA 59.200 50.000 9.66 0.00 0.00 2.83
3326 5897 1.198178 GCATCCGACGGCTTAAAACAA 59.802 47.619 9.66 0.00 0.00 2.83
3327 5898 2.159435 GCATCCGACGGCTTAAAACAAT 60.159 45.455 9.66 0.00 0.00 2.71
3328 5899 3.672241 GCATCCGACGGCTTAAAACAATT 60.672 43.478 9.66 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.611970 TGAAGAACCGGTTTCACTCAAA 58.388 40.909 23.22 0.84 36.57 2.69
41 44 6.308371 TCAGTTATTTGAAGAACCGGTTTC 57.692 37.500 23.22 16.57 30.74 2.78
44 47 6.488683 TCATTTCAGTTATTTGAAGAACCGGT 59.511 34.615 0.00 0.00 38.25 5.28
46 49 7.584987 ACTCATTTCAGTTATTTGAAGAACCG 58.415 34.615 0.00 0.00 38.25 4.44
367 894 5.097529 CCACATACACTGAACATGCATTTC 58.902 41.667 0.00 5.60 0.00 2.17
400 927 2.082231 GAGAGAACAGTGCATGCATGT 58.918 47.619 25.64 23.48 0.00 3.21
413 940 0.041982 AGGGAGGGAGTGGAGAGAAC 59.958 60.000 0.00 0.00 0.00 3.01
430 957 3.254892 GTCCGCTTTTACAGAGAAGAGG 58.745 50.000 0.00 0.00 42.16 3.69
435 1309 2.866460 GCAGTGTCCGCTTTTACAGAGA 60.866 50.000 0.00 0.00 0.00 3.10
448 1322 2.038387 ATTTGTATCGGGCAGTGTCC 57.962 50.000 2.76 2.76 0.00 4.02
456 1330 6.153000 AGAGCTATACCTGTATTTGTATCGGG 59.847 42.308 0.00 0.00 0.00 5.14
492 1366 9.107177 ACAATTTCTTTTCATGTGCAAATACAA 57.893 25.926 0.00 0.00 33.69 2.41
532 1406 3.170791 TCGCCAGTCTCATCAAGATTC 57.829 47.619 0.00 0.00 36.11 2.52
544 1418 2.355481 ACCGTTCGTTCGCCAGTC 60.355 61.111 0.00 0.00 0.00 3.51
549 1423 1.131826 CAATCCACCGTTCGTTCGC 59.868 57.895 0.00 0.00 0.00 4.70
550 1424 1.131826 GCAATCCACCGTTCGTTCG 59.868 57.895 0.00 0.00 0.00 3.95
551 1425 1.131826 CGCAATCCACCGTTCGTTC 59.868 57.895 0.00 0.00 0.00 3.95
552 1426 2.961669 GCGCAATCCACCGTTCGTT 61.962 57.895 0.30 0.00 0.00 3.85
553 1427 3.419759 GCGCAATCCACCGTTCGT 61.420 61.111 0.30 0.00 0.00 3.85
554 1428 2.749865 ATGCGCAATCCACCGTTCG 61.750 57.895 17.11 0.00 0.00 3.95
626 1501 0.504384 CTTGTTCACTCGCACTCACG 59.496 55.000 0.00 0.00 0.00 4.35
658 1533 1.626654 CGAATCGGCGTGCACTTTCT 61.627 55.000 16.19 0.00 0.00 2.52
757 1632 2.557452 GGGAGATTTTTCTGGCTTCCCA 60.557 50.000 1.89 0.00 39.32 4.37
765 1640 5.248640 TCTGCTACTTGGGAGATTTTTCTG 58.751 41.667 0.00 0.00 0.00 3.02
768 1643 5.880901 TCTTCTGCTACTTGGGAGATTTTT 58.119 37.500 0.00 0.00 33.89 1.94
832 1707 1.006571 TTCTCGACGGTGGTTGCTC 60.007 57.895 0.00 0.00 0.00 4.26
840 1715 3.147629 TCTTCTTCTTCTTCTCGACGGT 58.852 45.455 0.00 0.00 0.00 4.83
859 1734 2.158798 TGGATGTCGTCTCTCCGTATCT 60.159 50.000 0.00 0.00 31.36 1.98
861 1736 2.343484 TGGATGTCGTCTCTCCGTAT 57.657 50.000 0.00 0.00 31.36 3.06
862 1737 2.219458 GATGGATGTCGTCTCTCCGTA 58.781 52.381 0.00 0.00 31.36 4.02
863 1738 1.025812 GATGGATGTCGTCTCTCCGT 58.974 55.000 0.00 0.00 31.36 4.69
906 1781 1.804326 CCGCCTAGTGGAACGAACG 60.804 63.158 0.00 0.00 45.86 3.95
907 1782 0.175073 ATCCGCCTAGTGGAACGAAC 59.825 55.000 0.23 0.00 45.75 3.95
908 1783 0.458669 GATCCGCCTAGTGGAACGAA 59.541 55.000 0.23 0.00 45.75 3.85
909 1784 1.389609 GGATCCGCCTAGTGGAACGA 61.390 60.000 0.00 0.00 45.75 3.85
969 1866 2.868839 GCCGCCTCCGCTTGTATTTATA 60.869 50.000 0.00 0.00 0.00 0.98
970 1867 1.878953 CCGCCTCCGCTTGTATTTAT 58.121 50.000 0.00 0.00 0.00 1.40
997 1894 2.709636 GGTACGTACGTAGCAACTAGC 58.290 52.381 38.58 21.53 45.29 3.42
1004 1901 2.852522 GCTAAGCAGGTACGTACGTAGC 60.853 54.545 37.51 37.51 46.02 3.58
1005 1902 2.611292 AGCTAAGCAGGTACGTACGTAG 59.389 50.000 27.48 17.13 0.00 3.51
1006 1903 2.609459 GAGCTAAGCAGGTACGTACGTA 59.391 50.000 23.60 23.60 30.99 3.57
1007 1904 1.399791 GAGCTAAGCAGGTACGTACGT 59.600 52.381 25.98 25.98 30.99 3.57
1008 1905 1.594034 CGAGCTAAGCAGGTACGTACG 60.594 57.143 18.98 15.01 30.99 3.67
1009 1906 1.859197 GCGAGCTAAGCAGGTACGTAC 60.859 57.143 17.56 17.56 30.99 3.67
1055 1952 0.605589 AGGCGCCATTAGCTAGCTAG 59.394 55.000 31.54 16.84 40.39 3.42
1074 1971 1.917782 GCGTTTGCTTGCCGTGGATA 61.918 55.000 0.00 0.00 38.39 2.59
1293 2193 1.805945 GTTGAGCCCGAGCGTGTAG 60.806 63.158 0.00 0.00 46.67 2.74
1435 2362 2.743718 CCTCCAGTCCACGCTGTT 59.256 61.111 0.00 0.00 34.84 3.16
1503 2435 1.303309 CATTCGGGAGGTGCAGATTC 58.697 55.000 0.00 0.00 0.00 2.52
1504 2436 0.749454 GCATTCGGGAGGTGCAGATT 60.749 55.000 0.00 0.00 40.14 2.40
1542 2497 1.614903 TCATTTGCCAGCTTTGTCCTG 59.385 47.619 0.00 0.00 0.00 3.86
1552 2507 5.603170 ACATTCCCTTATTCATTTGCCAG 57.397 39.130 0.00 0.00 0.00 4.85
1732 2713 1.373748 GTTAGGGCTGCGTTGACGA 60.374 57.895 7.85 0.00 43.02 4.20
1794 2775 1.959226 CCTGCTTGGCGTTGTACGT 60.959 57.895 0.00 0.00 44.73 3.57
2053 3040 3.077556 AGTACTCCTGCCCGCCAG 61.078 66.667 0.00 0.00 41.41 4.85
2054 3041 3.390521 CAGTACTCCTGCCCGCCA 61.391 66.667 0.00 0.00 33.59 5.69
2169 3162 2.189521 GTCCATGGTGGGGTAGCG 59.810 66.667 12.58 0.00 38.32 4.26
2170 3163 1.224592 CTGTCCATGGTGGGGTAGC 59.775 63.158 12.58 0.00 38.32 3.58
2222 3217 1.453524 GTACTCGACGATGCATCATGC 59.546 52.381 25.70 1.35 45.29 4.06
2223 3218 3.005341 AGTACTCGACGATGCATCATG 57.995 47.619 25.70 14.37 0.00 3.07
2224 3219 4.379918 CCATAGTACTCGACGATGCATCAT 60.380 45.833 25.70 11.89 39.23 2.45
2225 3220 3.058224 CCATAGTACTCGACGATGCATCA 60.058 47.826 25.70 5.90 39.23 3.07
2226 3221 3.058155 ACCATAGTACTCGACGATGCATC 60.058 47.826 17.10 17.10 39.23 3.91
2227 3222 2.885266 ACCATAGTACTCGACGATGCAT 59.115 45.455 0.00 0.00 39.23 3.96
2228 3223 2.294979 ACCATAGTACTCGACGATGCA 58.705 47.619 0.00 0.00 39.23 3.96
2229 3224 3.351020 AACCATAGTACTCGACGATGC 57.649 47.619 0.00 0.00 39.23 3.91
2230 3225 6.665465 TGATAAACCATAGTACTCGACGATG 58.335 40.000 0.00 0.00 40.00 3.84
2231 3226 6.872628 TGATAAACCATAGTACTCGACGAT 57.127 37.500 0.00 0.00 0.00 3.73
2232 3227 6.317140 AGTTGATAAACCATAGTACTCGACGA 59.683 38.462 0.00 0.00 0.00 4.20
2233 3228 6.493116 AGTTGATAAACCATAGTACTCGACG 58.507 40.000 0.00 0.00 0.00 5.12
2234 3229 9.448294 CTTAGTTGATAAACCATAGTACTCGAC 57.552 37.037 0.00 0.00 0.00 4.20
2235 3230 9.399797 TCTTAGTTGATAAACCATAGTACTCGA 57.600 33.333 0.00 0.00 0.00 4.04
2241 3236 9.314321 CGTCAATCTTAGTTGATAAACCATAGT 57.686 33.333 0.00 0.00 39.99 2.12
2242 3237 9.314321 ACGTCAATCTTAGTTGATAAACCATAG 57.686 33.333 0.00 0.00 39.99 2.23
2244 3239 9.832445 ATACGTCAATCTTAGTTGATAAACCAT 57.168 29.630 0.00 0.00 39.99 3.55
2251 3246 9.128404 TGGTACTATACGTCAATCTTAGTTGAT 57.872 33.333 0.00 0.00 39.99 2.57
2252 3247 8.510243 TGGTACTATACGTCAATCTTAGTTGA 57.490 34.615 0.00 0.00 35.84 3.18
2255 3250 8.715998 CGTATGGTACTATACGTCAATCTTAGT 58.284 37.037 31.94 0.00 46.51 2.24
2272 3267 2.096496 ACTGCAGTCGTACGTATGGTAC 59.904 50.000 15.25 4.72 46.54 3.34
2273 3268 2.358957 ACTGCAGTCGTACGTATGGTA 58.641 47.619 15.25 2.73 0.00 3.25
2274 3269 1.171308 ACTGCAGTCGTACGTATGGT 58.829 50.000 15.25 6.82 0.00 3.55
2275 3270 2.096335 TGTACTGCAGTCGTACGTATGG 59.904 50.000 25.56 4.99 39.98 2.74
2276 3271 3.096461 GTGTACTGCAGTCGTACGTATG 58.904 50.000 25.56 15.49 39.98 2.39
2277 3272 2.222886 CGTGTACTGCAGTCGTACGTAT 60.223 50.000 25.56 1.88 39.98 3.06
2278 3273 1.126662 CGTGTACTGCAGTCGTACGTA 59.873 52.381 25.56 0.00 39.98 3.57
2279 3274 0.110509 CGTGTACTGCAGTCGTACGT 60.111 55.000 25.56 0.00 39.98 3.57
2280 3275 0.164432 TCGTGTACTGCAGTCGTACG 59.836 55.000 29.34 29.34 39.98 3.67
2281 3276 1.599992 GTCGTGTACTGCAGTCGTAC 58.400 55.000 25.56 17.01 38.13 3.67
2282 3277 0.164432 CGTCGTGTACTGCAGTCGTA 59.836 55.000 25.56 8.14 0.00 3.43
2283 3278 1.082300 CGTCGTGTACTGCAGTCGT 60.082 57.895 25.56 1.64 0.00 4.34
2284 3279 0.164432 TACGTCGTGTACTGCAGTCG 59.836 55.000 25.56 20.89 0.00 4.18
2285 3280 2.539346 ATACGTCGTGTACTGCAGTC 57.461 50.000 25.56 15.44 35.44 3.51
2286 3281 5.467735 TCATATATACGTCGTGTACTGCAGT 59.532 40.000 25.12 25.12 35.44 4.40
2287 3282 5.923665 TCATATATACGTCGTGTACTGCAG 58.076 41.667 13.48 13.48 35.44 4.41
2288 3283 5.927954 TCATATATACGTCGTGTACTGCA 57.072 39.130 8.47 0.00 35.44 4.41
2289 3284 7.792383 AATTCATATATACGTCGTGTACTGC 57.208 36.000 8.47 0.00 35.44 4.40
2290 3285 9.177304 ACAAATTCATATATACGTCGTGTACTG 57.823 33.333 8.47 7.55 35.44 2.74
2291 3286 9.740239 AACAAATTCATATATACGTCGTGTACT 57.260 29.630 8.47 0.00 35.44 2.73
2313 3308 9.558396 AAGATCCATGCTTTATTTGAAAAACAA 57.442 25.926 0.00 0.00 36.65 2.83
2314 3309 9.206870 GAAGATCCATGCTTTATTTGAAAAACA 57.793 29.630 0.00 0.00 0.00 2.83
2315 3310 8.375465 CGAAGATCCATGCTTTATTTGAAAAAC 58.625 33.333 0.00 0.00 0.00 2.43
2316 3311 8.087750 ACGAAGATCCATGCTTTATTTGAAAAA 58.912 29.630 0.00 0.00 0.00 1.94
2317 3312 7.601856 ACGAAGATCCATGCTTTATTTGAAAA 58.398 30.769 0.00 0.00 0.00 2.29
2318 3313 7.156876 ACGAAGATCCATGCTTTATTTGAAA 57.843 32.000 0.00 0.00 0.00 2.69
2319 3314 6.757897 ACGAAGATCCATGCTTTATTTGAA 57.242 33.333 0.00 0.00 0.00 2.69
2320 3315 7.272244 TCTACGAAGATCCATGCTTTATTTGA 58.728 34.615 0.00 0.00 0.00 2.69
2321 3316 7.482654 TCTACGAAGATCCATGCTTTATTTG 57.517 36.000 0.00 0.00 0.00 2.32
2322 3317 8.506168 TTTCTACGAAGATCCATGCTTTATTT 57.494 30.769 0.00 0.00 0.00 1.40
2323 3318 7.770897 ACTTTCTACGAAGATCCATGCTTTATT 59.229 33.333 0.00 0.00 0.00 1.40
2324 3319 7.275920 ACTTTCTACGAAGATCCATGCTTTAT 58.724 34.615 0.00 0.00 0.00 1.40
2325 3320 6.640518 ACTTTCTACGAAGATCCATGCTTTA 58.359 36.000 0.00 0.00 0.00 1.85
2326 3321 5.491982 ACTTTCTACGAAGATCCATGCTTT 58.508 37.500 0.00 0.00 0.00 3.51
2327 3322 5.091261 ACTTTCTACGAAGATCCATGCTT 57.909 39.130 0.00 0.00 0.00 3.91
2328 3323 4.744795 ACTTTCTACGAAGATCCATGCT 57.255 40.909 0.00 0.00 0.00 3.79
2329 3324 5.348986 TGTACTTTCTACGAAGATCCATGC 58.651 41.667 0.00 0.00 0.00 4.06
2330 3325 6.565234 ACTGTACTTTCTACGAAGATCCATG 58.435 40.000 0.00 0.00 0.00 3.66
2331 3326 6.777213 ACTGTACTTTCTACGAAGATCCAT 57.223 37.500 0.00 0.00 0.00 3.41
2332 3327 7.108194 TCTACTGTACTTTCTACGAAGATCCA 58.892 38.462 0.00 0.00 0.00 3.41
2333 3328 7.551035 TCTACTGTACTTTCTACGAAGATCC 57.449 40.000 0.00 0.00 0.00 3.36
2334 3329 9.276397 GTTTCTACTGTACTTTCTACGAAGATC 57.724 37.037 0.00 0.00 0.00 2.75
2335 3330 7.961827 CGTTTCTACTGTACTTTCTACGAAGAT 59.038 37.037 0.00 0.00 0.00 2.40
2336 3331 7.171508 TCGTTTCTACTGTACTTTCTACGAAGA 59.828 37.037 0.00 0.00 32.24 2.87
2337 3332 7.293745 TCGTTTCTACTGTACTTTCTACGAAG 58.706 38.462 0.00 0.00 32.24 3.79
2338 3333 7.189693 TCGTTTCTACTGTACTTTCTACGAA 57.810 36.000 0.00 0.00 32.24 3.85
2339 3334 6.785488 TCGTTTCTACTGTACTTTCTACGA 57.215 37.500 0.00 0.00 32.67 3.43
2340 3335 6.686253 GGATCGTTTCTACTGTACTTTCTACG 59.314 42.308 0.00 0.00 0.00 3.51
2341 3336 7.533426 TGGATCGTTTCTACTGTACTTTCTAC 58.467 38.462 0.00 0.00 0.00 2.59
2342 3337 7.692460 TGGATCGTTTCTACTGTACTTTCTA 57.308 36.000 0.00 0.00 0.00 2.10
2343 3338 6.585695 TGGATCGTTTCTACTGTACTTTCT 57.414 37.500 0.00 0.00 0.00 2.52
2344 3339 7.829378 AATGGATCGTTTCTACTGTACTTTC 57.171 36.000 0.00 0.00 0.00 2.62
2345 3340 7.360946 GCAAATGGATCGTTTCTACTGTACTTT 60.361 37.037 0.00 0.00 0.00 2.66
2346 3341 6.092259 GCAAATGGATCGTTTCTACTGTACTT 59.908 38.462 0.00 0.00 0.00 2.24
2347 3342 5.581085 GCAAATGGATCGTTTCTACTGTACT 59.419 40.000 0.00 0.00 0.00 2.73
2348 3343 5.220605 GGCAAATGGATCGTTTCTACTGTAC 60.221 44.000 0.00 0.00 0.00 2.90
2349 3344 4.873827 GGCAAATGGATCGTTTCTACTGTA 59.126 41.667 0.00 0.00 0.00 2.74
2350 3345 3.689649 GGCAAATGGATCGTTTCTACTGT 59.310 43.478 0.00 0.00 0.00 3.55
2351 3346 3.065371 GGGCAAATGGATCGTTTCTACTG 59.935 47.826 0.00 0.00 0.00 2.74
2352 3347 3.279434 GGGCAAATGGATCGTTTCTACT 58.721 45.455 0.00 0.00 0.00 2.57
2353 3348 3.013921 TGGGCAAATGGATCGTTTCTAC 58.986 45.455 0.00 0.00 0.00 2.59
2354 3349 3.358111 TGGGCAAATGGATCGTTTCTA 57.642 42.857 0.00 0.00 0.00 2.10
2355 3350 2.214376 TGGGCAAATGGATCGTTTCT 57.786 45.000 0.00 0.00 0.00 2.52
2356 3351 2.166254 ACATGGGCAAATGGATCGTTTC 59.834 45.455 0.00 0.00 31.46 2.78
2357 3352 2.178580 ACATGGGCAAATGGATCGTTT 58.821 42.857 0.00 0.00 31.46 3.60
2358 3353 1.851304 ACATGGGCAAATGGATCGTT 58.149 45.000 0.00 0.00 31.46 3.85
2359 3354 2.727123 TACATGGGCAAATGGATCGT 57.273 45.000 0.00 0.00 31.46 3.73
2360 3355 4.379813 GCTATTACATGGGCAAATGGATCG 60.380 45.833 0.00 0.00 31.46 3.69
2361 3356 4.523943 TGCTATTACATGGGCAAATGGATC 59.476 41.667 0.00 0.00 31.46 3.36
2362 3357 4.482030 TGCTATTACATGGGCAAATGGAT 58.518 39.130 0.00 1.68 31.46 3.41
2363 3358 3.890756 CTGCTATTACATGGGCAAATGGA 59.109 43.478 0.00 0.00 34.21 3.41
2364 3359 3.553508 GCTGCTATTACATGGGCAAATGG 60.554 47.826 0.00 0.00 34.21 3.16
2365 3360 3.068448 TGCTGCTATTACATGGGCAAATG 59.932 43.478 0.00 0.00 34.21 2.32
2366 3361 3.298619 TGCTGCTATTACATGGGCAAAT 58.701 40.909 0.00 0.00 34.21 2.32
2367 3362 2.732763 TGCTGCTATTACATGGGCAAA 58.267 42.857 0.00 0.00 34.21 3.68
2368 3363 2.433662 TGCTGCTATTACATGGGCAA 57.566 45.000 0.00 0.00 34.21 4.52
2369 3364 2.662535 ATGCTGCTATTACATGGGCA 57.337 45.000 0.00 0.00 0.00 5.36
2370 3365 4.326826 TCTTATGCTGCTATTACATGGGC 58.673 43.478 0.00 0.00 0.00 5.36
2371 3366 6.432162 ACAATCTTATGCTGCTATTACATGGG 59.568 38.462 0.00 0.00 0.00 4.00
2372 3367 7.444629 ACAATCTTATGCTGCTATTACATGG 57.555 36.000 0.00 0.00 0.00 3.66
2408 3403 9.817809 GATGAGGTACTAGTGTTCATTTTCATA 57.182 33.333 5.39 0.00 41.55 2.15
2409 3404 8.321353 TGATGAGGTACTAGTGTTCATTTTCAT 58.679 33.333 5.39 3.82 41.55 2.57
2410 3405 7.676004 TGATGAGGTACTAGTGTTCATTTTCA 58.324 34.615 5.39 5.04 41.55 2.69
2411 3406 7.819900 ACTGATGAGGTACTAGTGTTCATTTTC 59.180 37.037 5.39 2.72 41.55 2.29
2412 3407 7.680730 ACTGATGAGGTACTAGTGTTCATTTT 58.319 34.615 5.39 0.00 41.55 1.82
2413 3408 7.246171 ACTGATGAGGTACTAGTGTTCATTT 57.754 36.000 5.39 0.00 41.55 2.32
2414 3409 6.127310 GGACTGATGAGGTACTAGTGTTCATT 60.127 42.308 5.39 0.00 41.55 2.57
2415 3410 5.361285 GGACTGATGAGGTACTAGTGTTCAT 59.639 44.000 5.39 11.37 41.55 2.57
2416 3411 4.705507 GGACTGATGAGGTACTAGTGTTCA 59.294 45.833 5.39 6.93 41.55 3.18
2417 3412 4.705507 TGGACTGATGAGGTACTAGTGTTC 59.294 45.833 5.39 1.00 41.55 3.18
2418 3413 4.673968 TGGACTGATGAGGTACTAGTGTT 58.326 43.478 5.39 0.00 41.55 3.32
2419 3414 4.317530 TGGACTGATGAGGTACTAGTGT 57.682 45.455 5.39 0.00 41.55 3.55
2420 3415 4.038522 CCATGGACTGATGAGGTACTAGTG 59.961 50.000 5.56 0.00 41.55 2.74
2421 3416 4.219115 CCATGGACTGATGAGGTACTAGT 58.781 47.826 5.56 0.00 41.55 2.57
2422 3417 3.006323 GCCATGGACTGATGAGGTACTAG 59.994 52.174 18.40 0.00 41.55 2.57
2423 3418 2.965831 GCCATGGACTGATGAGGTACTA 59.034 50.000 18.40 0.00 41.55 1.82
2425 3420 1.765314 AGCCATGGACTGATGAGGTAC 59.235 52.381 18.40 0.00 0.00 3.34
2426 3421 2.042464 GAGCCATGGACTGATGAGGTA 58.958 52.381 18.40 0.00 0.00 3.08
2427 3422 0.835941 GAGCCATGGACTGATGAGGT 59.164 55.000 18.40 0.00 0.00 3.85
2428 3423 0.108207 GGAGCCATGGACTGATGAGG 59.892 60.000 18.40 0.00 0.00 3.86
2429 3424 0.835276 TGGAGCCATGGACTGATGAG 59.165 55.000 18.40 0.00 0.00 2.90
2430 3425 1.514983 ATGGAGCCATGGACTGATGA 58.485 50.000 18.40 0.00 35.03 2.92
2440 3435 1.897137 CGATGCTGCATGGAGCCAT 60.897 57.895 32.84 25.12 44.83 4.40
2441 3436 2.515290 CGATGCTGCATGGAGCCA 60.515 61.111 32.84 21.96 44.83 4.75
2442 3437 2.203112 TCGATGCTGCATGGAGCC 60.203 61.111 32.84 19.16 44.83 4.70
2443 3438 0.249615 TACTCGATGCTGCATGGAGC 60.250 55.000 37.94 30.22 45.96 4.70
2444 3439 2.067013 CATACTCGATGCTGCATGGAG 58.933 52.381 37.00 37.00 46.90 3.86
2482 3481 0.649475 GCAGCTGCATCGTTCTGTAG 59.351 55.000 33.36 0.00 41.59 2.74
2483 3482 2.754648 GCAGCTGCATCGTTCTGTA 58.245 52.632 33.36 0.00 41.59 2.74
2484 3483 3.571119 GCAGCTGCATCGTTCTGT 58.429 55.556 33.36 0.00 41.59 3.41
2509 3534 7.654022 TCCAAGATCCATATATACGTATGCA 57.346 36.000 18.37 5.90 32.03 3.96
2528 3562 9.037737 CCATGCTTTAAATGTTCATTATCCAAG 57.962 33.333 0.00 1.64 0.00 3.61
2545 3765 4.422840 CAAACGCATCATTCCATGCTTTA 58.577 39.130 4.06 0.00 46.09 1.85
2635 5141 5.657470 TGAGAAGAACATTCAGAACAACG 57.343 39.130 0.00 0.00 0.00 4.10
2637 5143 5.048504 GGCATGAGAAGAACATTCAGAACAA 60.049 40.000 0.00 0.00 0.00 2.83
2638 5144 4.456911 GGCATGAGAAGAACATTCAGAACA 59.543 41.667 0.00 0.00 0.00 3.18
2675 5190 2.162681 AGAAGAACGGGCATGGAAAAG 58.837 47.619 0.00 0.00 0.00 2.27
2676 5191 2.286365 AGAAGAACGGGCATGGAAAA 57.714 45.000 0.00 0.00 0.00 2.29
2677 5192 2.159382 GAAGAAGAACGGGCATGGAAA 58.841 47.619 0.00 0.00 0.00 3.13
2678 5193 1.613255 GGAAGAAGAACGGGCATGGAA 60.613 52.381 0.00 0.00 0.00 3.53
2679 5194 0.035439 GGAAGAAGAACGGGCATGGA 60.035 55.000 0.00 0.00 0.00 3.41
2680 5195 0.035056 AGGAAGAAGAACGGGCATGG 60.035 55.000 0.00 0.00 0.00 3.66
2681 5196 1.065854 AGAGGAAGAAGAACGGGCATG 60.066 52.381 0.00 0.00 0.00 4.06
2682 5197 1.208293 GAGAGGAAGAAGAACGGGCAT 59.792 52.381 0.00 0.00 0.00 4.40
2683 5198 0.608640 GAGAGGAAGAAGAACGGGCA 59.391 55.000 0.00 0.00 0.00 5.36
2703 5218 2.987413 TGTCATTTGTGTCGGATTGC 57.013 45.000 0.00 0.00 0.00 3.56
2707 5222 3.501828 CCAGATTTGTCATTTGTGTCGGA 59.498 43.478 0.00 0.00 0.00 4.55
2719 5234 3.063180 CGACTGCTTGATCCAGATTTGTC 59.937 47.826 0.00 0.00 34.47 3.18
2720 5235 3.005554 CGACTGCTTGATCCAGATTTGT 58.994 45.455 0.00 0.00 34.47 2.83
2721 5236 3.005554 ACGACTGCTTGATCCAGATTTG 58.994 45.455 0.00 0.00 34.47 2.32
2722 5237 3.265791 GACGACTGCTTGATCCAGATTT 58.734 45.455 0.00 0.00 34.47 2.17
2724 5239 1.202348 CGACGACTGCTTGATCCAGAT 60.202 52.381 0.00 0.00 34.47 2.90
2725 5240 0.171231 CGACGACTGCTTGATCCAGA 59.829 55.000 0.00 0.00 34.47 3.86
2726 5241 0.803768 CCGACGACTGCTTGATCCAG 60.804 60.000 0.00 0.00 36.41 3.86
2727 5242 1.215382 CCGACGACTGCTTGATCCA 59.785 57.895 0.00 0.00 0.00 3.41
2729 5244 0.526524 CCTCCGACGACTGCTTGATC 60.527 60.000 0.00 0.00 0.00 2.92
2730 5245 1.513158 CCTCCGACGACTGCTTGAT 59.487 57.895 0.00 0.00 0.00 2.57
2732 5247 2.125912 CCCTCCGACGACTGCTTG 60.126 66.667 0.00 0.00 0.00 4.01
2739 5310 0.251474 TTCTTCCTTCCCTCCGACGA 60.251 55.000 0.00 0.00 0.00 4.20
2742 5313 0.544357 TGCTTCTTCCTTCCCTCCGA 60.544 55.000 0.00 0.00 0.00 4.55
2772 5343 1.807814 AATGGGATAGCTTCTCCGGT 58.192 50.000 0.00 0.00 33.29 5.28
2774 5345 5.451242 GCTAGATAATGGGATAGCTTCTCCG 60.451 48.000 0.00 0.00 38.07 4.63
2775 5346 5.660864 AGCTAGATAATGGGATAGCTTCTCC 59.339 44.000 0.00 0.00 46.70 3.71
2806 5377 5.012148 CCCTAACACCCCTAAGATACATCAG 59.988 48.000 0.00 0.00 0.00 2.90
2811 5382 3.390311 CACCCCTAACACCCCTAAGATAC 59.610 52.174 0.00 0.00 0.00 2.24
2827 5398 4.974721 CGGCCAACTTGCACCCCT 62.975 66.667 2.24 0.00 0.00 4.79
3214 5785 2.435410 CGTAAACCGGCCTCCACC 60.435 66.667 0.00 0.00 0.00 4.61
3215 5786 2.030958 CACGTAAACCGGCCTCCAC 61.031 63.158 0.00 0.00 42.24 4.02
3216 5787 2.344500 CACGTAAACCGGCCTCCA 59.656 61.111 0.00 0.00 42.24 3.86
3217 5788 2.435410 CCACGTAAACCGGCCTCC 60.435 66.667 0.00 0.00 42.24 4.30
3218 5789 2.435410 CCCACGTAAACCGGCCTC 60.435 66.667 0.00 0.00 42.24 4.70
3219 5790 4.024545 CCCCACGTAAACCGGCCT 62.025 66.667 0.00 0.00 42.24 5.19
3223 5794 4.685467 ACCGCCCCACGTAAACCG 62.685 66.667 0.00 0.00 41.42 4.44
3224 5795 2.743538 GACCGCCCCACGTAAACC 60.744 66.667 0.00 0.00 41.42 3.27
3225 5796 3.113979 CGACCGCCCCACGTAAAC 61.114 66.667 0.00 0.00 41.42 2.01
3226 5797 3.285523 CTCGACCGCCCCACGTAAA 62.286 63.158 0.00 0.00 41.42 2.01
3227 5798 3.751246 CTCGACCGCCCCACGTAA 61.751 66.667 0.00 0.00 41.42 3.18
3235 5806 3.372554 CTTCTTCCCCTCGACCGCC 62.373 68.421 0.00 0.00 0.00 6.13
3236 5807 2.184579 CTTCTTCCCCTCGACCGC 59.815 66.667 0.00 0.00 0.00 5.68
3237 5808 0.680280 TCTCTTCTTCCCCTCGACCG 60.680 60.000 0.00 0.00 0.00 4.79
3238 5809 1.205179 GTTCTCTTCTTCCCCTCGACC 59.795 57.143 0.00 0.00 0.00 4.79
3239 5810 1.893801 TGTTCTCTTCTTCCCCTCGAC 59.106 52.381 0.00 0.00 0.00 4.20
3240 5811 2.171840 CTGTTCTCTTCTTCCCCTCGA 58.828 52.381 0.00 0.00 0.00 4.04
3241 5812 1.205893 CCTGTTCTCTTCTTCCCCTCG 59.794 57.143 0.00 0.00 0.00 4.63
3242 5813 2.261729 ACCTGTTCTCTTCTTCCCCTC 58.738 52.381 0.00 0.00 0.00 4.30
3243 5814 2.424684 ACCTGTTCTCTTCTTCCCCT 57.575 50.000 0.00 0.00 0.00 4.79
3244 5815 2.093394 GCTACCTGTTCTCTTCTTCCCC 60.093 54.545 0.00 0.00 0.00 4.81
3245 5816 2.835156 AGCTACCTGTTCTCTTCTTCCC 59.165 50.000 0.00 0.00 0.00 3.97
3246 5817 3.368948 CCAGCTACCTGTTCTCTTCTTCC 60.369 52.174 0.00 0.00 37.38 3.46
3247 5818 3.368948 CCCAGCTACCTGTTCTCTTCTTC 60.369 52.174 0.00 0.00 37.38 2.87
3248 5819 2.569404 CCCAGCTACCTGTTCTCTTCTT 59.431 50.000 0.00 0.00 37.38 2.52
3249 5820 2.183679 CCCAGCTACCTGTTCTCTTCT 58.816 52.381 0.00 0.00 37.38 2.85
3250 5821 1.406205 GCCCAGCTACCTGTTCTCTTC 60.406 57.143 0.00 0.00 37.38 2.87
3251 5822 0.615850 GCCCAGCTACCTGTTCTCTT 59.384 55.000 0.00 0.00 37.38 2.85
3252 5823 0.252467 AGCCCAGCTACCTGTTCTCT 60.252 55.000 0.00 0.00 36.99 3.10
3253 5824 0.107945 CAGCCCAGCTACCTGTTCTC 60.108 60.000 0.00 0.00 36.40 2.87
3254 5825 1.557269 CCAGCCCAGCTACCTGTTCT 61.557 60.000 0.00 0.00 36.40 3.01
3255 5826 1.078143 CCAGCCCAGCTACCTGTTC 60.078 63.158 0.00 0.00 36.40 3.18
3256 5827 1.538876 TCCAGCCCAGCTACCTGTT 60.539 57.895 0.00 0.00 36.40 3.16
3257 5828 1.992277 CTCCAGCCCAGCTACCTGT 60.992 63.158 0.00 0.00 36.40 4.00
3258 5829 2.739996 CCTCCAGCCCAGCTACCTG 61.740 68.421 0.00 0.00 36.40 4.00
3259 5830 2.366167 CCTCCAGCCCAGCTACCT 60.366 66.667 0.00 0.00 36.40 3.08
3260 5831 2.301738 AACCTCCAGCCCAGCTACC 61.302 63.158 0.00 0.00 36.40 3.18
3261 5832 1.078143 CAACCTCCAGCCCAGCTAC 60.078 63.158 0.00 0.00 36.40 3.58
3262 5833 0.840288 TTCAACCTCCAGCCCAGCTA 60.840 55.000 0.00 0.00 36.40 3.32
3263 5834 2.134630 CTTCAACCTCCAGCCCAGCT 62.135 60.000 0.00 0.00 40.77 4.24
3264 5835 1.676967 CTTCAACCTCCAGCCCAGC 60.677 63.158 0.00 0.00 0.00 4.85
3265 5836 0.401738 TTCTTCAACCTCCAGCCCAG 59.598 55.000 0.00 0.00 0.00 4.45
3266 5837 0.401738 CTTCTTCAACCTCCAGCCCA 59.598 55.000 0.00 0.00 0.00 5.36
3267 5838 0.962855 GCTTCTTCAACCTCCAGCCC 60.963 60.000 0.00 0.00 0.00 5.19
3268 5839 0.037447 AGCTTCTTCAACCTCCAGCC 59.963 55.000 0.00 0.00 0.00 4.85
3269 5840 1.163554 CAGCTTCTTCAACCTCCAGC 58.836 55.000 0.00 0.00 0.00 4.85
3270 5841 2.847327 TCAGCTTCTTCAACCTCCAG 57.153 50.000 0.00 0.00 0.00 3.86
3271 5842 2.026822 GGATCAGCTTCTTCAACCTCCA 60.027 50.000 0.00 0.00 0.00 3.86
3272 5843 2.637947 GGATCAGCTTCTTCAACCTCC 58.362 52.381 0.00 0.00 0.00 4.30
3273 5844 2.093973 TCGGATCAGCTTCTTCAACCTC 60.094 50.000 0.00 0.00 0.00 3.85
3274 5845 1.902508 TCGGATCAGCTTCTTCAACCT 59.097 47.619 0.00 0.00 0.00 3.50
3275 5846 2.003301 GTCGGATCAGCTTCTTCAACC 58.997 52.381 0.00 0.00 0.00 3.77
3276 5847 2.003301 GGTCGGATCAGCTTCTTCAAC 58.997 52.381 0.00 0.00 0.00 3.18
3277 5848 1.623311 TGGTCGGATCAGCTTCTTCAA 59.377 47.619 0.00 0.00 0.00 2.69
3278 5849 1.266178 TGGTCGGATCAGCTTCTTCA 58.734 50.000 0.00 0.00 0.00 3.02
3279 5850 2.478831 GATGGTCGGATCAGCTTCTTC 58.521 52.381 0.00 0.00 0.00 2.87
3280 5851 1.139853 GGATGGTCGGATCAGCTTCTT 59.860 52.381 6.46 0.00 0.00 2.52
3281 5852 0.755686 GGATGGTCGGATCAGCTTCT 59.244 55.000 6.46 0.00 0.00 2.85
3282 5853 0.465705 TGGATGGTCGGATCAGCTTC 59.534 55.000 6.46 0.00 0.00 3.86
3283 5854 1.135094 ATGGATGGTCGGATCAGCTT 58.865 50.000 6.46 0.00 0.00 3.74
3284 5855 1.135094 AATGGATGGTCGGATCAGCT 58.865 50.000 6.46 0.00 0.00 4.24
3285 5856 1.972872 AAATGGATGGTCGGATCAGC 58.027 50.000 0.00 0.00 0.00 4.26
3286 5857 2.033801 GCAAAATGGATGGTCGGATCAG 59.966 50.000 0.00 0.00 0.00 2.90
3287 5858 2.023673 GCAAAATGGATGGTCGGATCA 58.976 47.619 0.00 0.00 0.00 2.92
3288 5859 2.023673 TGCAAAATGGATGGTCGGATC 58.976 47.619 0.00 0.00 0.00 3.36
3289 5860 2.142356 TGCAAAATGGATGGTCGGAT 57.858 45.000 0.00 0.00 0.00 4.18
3290 5861 2.023673 GATGCAAAATGGATGGTCGGA 58.976 47.619 0.00 0.00 0.00 4.55
3291 5862 1.067516 GGATGCAAAATGGATGGTCGG 59.932 52.381 0.00 0.00 0.00 4.79
3292 5863 1.268692 CGGATGCAAAATGGATGGTCG 60.269 52.381 0.00 0.00 0.00 4.79
3293 5864 2.023673 TCGGATGCAAAATGGATGGTC 58.976 47.619 0.00 0.00 0.00 4.02
3294 5865 1.750778 GTCGGATGCAAAATGGATGGT 59.249 47.619 0.00 0.00 0.00 3.55
3295 5866 1.268692 CGTCGGATGCAAAATGGATGG 60.269 52.381 0.00 0.00 0.00 3.51
3296 5867 1.268692 CCGTCGGATGCAAAATGGATG 60.269 52.381 4.91 0.00 0.00 3.51
3297 5868 1.024271 CCGTCGGATGCAAAATGGAT 58.976 50.000 4.91 0.00 0.00 3.41
3298 5869 1.653094 GCCGTCGGATGCAAAATGGA 61.653 55.000 17.49 0.00 0.00 3.41
3299 5870 1.226660 GCCGTCGGATGCAAAATGG 60.227 57.895 17.49 0.00 0.00 3.16
3300 5871 0.171007 AAGCCGTCGGATGCAAAATG 59.829 50.000 17.49 0.00 0.00 2.32
3301 5872 1.745232 TAAGCCGTCGGATGCAAAAT 58.255 45.000 17.49 0.00 0.00 1.82
3302 5873 1.524848 TTAAGCCGTCGGATGCAAAA 58.475 45.000 17.49 0.00 0.00 2.44
3303 5874 1.524848 TTTAAGCCGTCGGATGCAAA 58.475 45.000 17.49 10.39 0.00 3.68
3304 5875 1.198178 GTTTTAAGCCGTCGGATGCAA 59.802 47.619 17.49 3.88 0.00 4.08
3305 5876 0.800012 GTTTTAAGCCGTCGGATGCA 59.200 50.000 17.49 0.00 0.00 3.96
3306 5877 0.800012 TGTTTTAAGCCGTCGGATGC 59.200 50.000 17.49 0.00 0.00 3.91
3307 5878 3.757745 ATTGTTTTAAGCCGTCGGATG 57.242 42.857 17.49 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.