AutoCloner

Multiple sequence alignment - TraesCS2A01G068900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G068900	chr2A	100.000	5249	0	0	1	5249	30278241	30272993	0.000000e+00	9694
1	TraesCS2A01G068900	chr2A	87.023	2674	297	23	1662	4328	30307805	30305175	0.000000e+00	2970
2	TraesCS2A01G068900	chr2A	95.768	1394	53	4	1831	3223	30198141	30196753	0.000000e+00	2242
3	TraesCS2A01G068900	chr2A	88.283	1835	146	35	38	1836	30200255	30198454	0.000000e+00	2134
4	TraesCS2A01G068900	chr2A	88.732	213	22	2	1576	1787	30308033	30307822	5.210000e-65	259
5	TraesCS2A01G068900	chr2A	96.753	154	2	3	5096	5249	30257494	30257344	2.430000e-63	254
6	TraesCS2A01G068900	chr2D	95.242	4330	186	9	1	4328	28086025	28081714	0.000000e+00	6837
7	TraesCS2A01G068900	chr2D	89.113	3463	336	24	1813	5249	28423628	28420181	0.000000e+00	4268
8	TraesCS2A01G068900	chr2D	87.141	2823	332	16	1629	4445	28071847	28069050	0.000000e+00	3173
9	TraesCS2A01G068900	chr2D	89.589	1412	133	10	2853	4262	28079402	28078003	0.000000e+00	1781
10	TraesCS2A01G068900	chr2D	82.924	1710	168	51	1	1676	28073629	28072010	0.000000e+00	1426
11	TraesCS2A01G068900	chr2D	84.676	633	88	9	1080	1708	28424448	28423821	1.610000e-174	623
12	TraesCS2A01G068900	chr2D	85.531	622	50	17	478	1083	28090811	28090214	9.660000e-172	614
13	TraesCS2A01G068900	chr2D	82.661	248	31	4	200	442	28091050	28090810	5.330000e-50	209
14	TraesCS2A01G068900	chr2B	94.112	2904	157	8	1588	4487	45695080	45697973	0.000000e+00	4403
15	TraesCS2A01G068900	chr2B	87.518	2764	305	17	2021	4765	44903379	44906121	0.000000e+00	3157
16	TraesCS2A01G068900	chr2B	85.490	1020	99	21	4261	5249	45621548	45622549	0.000000e+00	1018
17	TraesCS2A01G068900	chr2B	89.007	755	58	6	787	1536	45694366	45695100	0.000000e+00	911
18	TraesCS2A01G068900	chr2B	81.332	1066	126	30	24	1050	44901259	44902290	0.000000e+00	798
19	TraesCS2A01G068900	chr2B	80.821	1048	167	19	707	1744	44902371	44903394	0.000000e+00	791
20	TraesCS2A01G068900	chr2B	85.460	674	73	16	4154	4805	44897335	44898005	0.000000e+00	678
21	TraesCS2A01G068900	chr2B	88.710	310	21	6	1	297	45693984	45694292	2.990000e-97	366
22	TraesCS2A01G068900	chr2B	82.415	381	51	10	4878	5249	44923116	44923489	8.480000e-83	318
23	TraesCS2A01G068900	chr2B	91.429	210	16	2	3877	4085	44897115	44897323	2.390000e-73	287

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G068900	chr2A	30272993	30278241	5248	True	9694.000000	9694	100.000000	1	5249	1	chr2A.!!$R2	5248
1	TraesCS2A01G068900	chr2A	30196753	30200255	3502	True	2188.000000	2242	92.025500	38	3223	2	chr2A.!!$R3	3185
2	TraesCS2A01G068900	chr2A	30305175	30308033	2858	True	1614.500000	2970	87.877500	1576	4328	2	chr2A.!!$R4	2752
3	TraesCS2A01G068900	chr2D	28078003	28086025	8022	True	4309.000000	6837	92.415500	1	4328	2	chr2D.!!$R2	4327
4	TraesCS2A01G068900	chr2D	28420181	28424448	4267	True	2445.500000	4268	86.894500	1080	5249	2	chr2D.!!$R4	4169
5	TraesCS2A01G068900	chr2D	28069050	28073629	4579	True	2299.500000	3173	85.032500	1	4445	2	chr2D.!!$R1	4444
6	TraesCS2A01G068900	chr2D	28090214	28091050	836	True	411.500000	614	84.096000	200	1083	2	chr2D.!!$R3	883
7	TraesCS2A01G068900	chr2B	45693984	45697973	3989	False	1893.333333	4403	90.609667	1	4487	3	chr2B.!!$F4	4486
8	TraesCS2A01G068900	chr2B	44897115	44906121	9006	False	1142.200000	3157	85.312000	24	4805	5	chr2B.!!$F3	4781
9	TraesCS2A01G068900	chr2B	45621548	45622549	1001	False	1018.000000	1018	85.490000	4261	5249	1	chr2B.!!$F2	988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
186	4308	0.907486	CTCTCATTGGTCCAGGCAGA	59.093	55.000	4.26	F
305	4441	1.410517	TGCAGCTATACAGAGTCCAGC	59.589	52.381	4.85	F
336	4476	1.871039	CTCGACCAAACATTCACCGTT	59.129	47.619	4.44	F
1812	6908	0.037232	CGGGTTCAGTTCCAGAGACC	60.037	60.000	3.85	F
3476	8894	0.179108	GTATGCTCGACAGTGGACCC	60.179	60.000	4.46	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1278	5879	0.178891	ACTTGAAGGAGAGGAGGGCA	60.179	55.0	0.00	0.00	5.36	R
1812	6908	6.410540	ACTAAGGTTCTGAATAAGGCTCAAG	58.589	40.0	0.00	0.00	3.02	R
2309	7723	1.086696	CTCAACTGGTATTGTGCCGG	58.913	55.0	0.00	38.32	6.13	R
3751	9169	0.253327	GGGCTACCAGGAGTTGAAGG	59.747	60.0	0.00	36.50	3.46	R
4954	13207	0.179100	ATGAATCACCGCGACTCCTG	60.179	55.0	8.23	0.00	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
124	4246	5.391950	CCCATGTTCTTGGTAGAATTCAACG	60.392	44.000	8.44	0.00	42.14	4.10
140	4262	4.015872	TCAACGAAGGACCTGCTTAAAT	57.984	40.909	0.00	0.00	0.00	1.40
186	4308	0.907486	CTCTCATTGGTCCAGGCAGA	59.093	55.000	0.00	0.00	0.00	4.26
305	4441	1.410517	TGCAGCTATACAGAGTCCAGC	59.589	52.381	0.00	0.00	0.00	4.85
336	4476	1.871039	CTCGACCAAACATTCACCGTT	59.129	47.619	0.00	0.00	0.00	4.44
337	4477	2.289547	CTCGACCAAACATTCACCGTTT	59.710	45.455	0.00	0.00	37.04	3.60
1042	5637	3.463944	ACACCAAGTCAAGTAAAGGTCG	58.536	45.455	0.00	0.00	0.00	4.79
1050	5645	3.187842	GTCAAGTAAAGGTCGCGGAAAAT	59.812	43.478	6.13	0.00	0.00	1.82
1058	5653	3.143728	AGGTCGCGGAAAATAAAACACT	58.856	40.909	6.13	0.00	0.00	3.55
1183	5784	2.031120	CTCTCCGCTCTCTTTCTCCAT	58.969	52.381	0.00	0.00	0.00	3.41
1226	5827	6.351711	TCACCCATCTTCTCATATTGTTCTG	58.648	40.000	0.00	0.00	0.00	3.02
1249	5850	2.314647	AACACCGTCGCACAATCCG	61.315	57.895	0.00	0.00	0.00	4.18
1812	6908	0.037232	CGGGTTCAGTTCCAGAGACC	60.037	60.000	0.00	0.00	0.00	3.85
1839	7253	8.090788	TGAGCCTTATTCAGAACCTTAGTATT	57.909	34.615	0.00	0.00	0.00	1.89
2046	7460	4.277423	CCATCATCACTAGCAAATGCATCA	59.723	41.667	8.28	0.00	45.16	3.07
2338	7752	8.082242	GCACAATACCAGTTGAGATTTTTAACT	58.918	33.333	0.00	0.00	35.18	2.24
3291	8709	5.451242	GCTCTCTCCGATTAACAAGATCAGT	60.451	44.000	0.00	0.00	0.00	3.41
3370	8788	6.216569	GTCGCTATCAAGTTATTCCATCTCA	58.783	40.000	0.00	0.00	0.00	3.27
3429	8847	3.276846	GTGCTGCGAAACACCCGT	61.277	61.111	0.00	0.00	0.00	5.28
3476	8894	0.179108	GTATGCTCGACAGTGGACCC	60.179	60.000	0.00	0.00	0.00	4.46
3570	8988	2.533266	AGCTACATCACAATAGCCCG	57.467	50.000	0.00	0.00	44.10	6.13
3582	9000	4.579340	CACAATAGCCCGAAGAGAGTACTA	59.421	45.833	0.00	0.00	0.00	1.82
3654	9072	7.116075	TGGATTATATGCACAACCAGTTAACT	58.884	34.615	1.12	1.12	0.00	2.24
3663	9081	3.325135	ACAACCAGTTAACTCCTCCTCTG	59.675	47.826	4.77	0.00	0.00	3.35
3702	9120	2.233676	GCCCGGAAATGTTCTTTTGGAT	59.766	45.455	0.73	0.00	0.00	3.41
3706	9124	6.639563	CCCGGAAATGTTCTTTTGGATTATT	58.360	36.000	0.73	0.00	0.00	1.40
3751	9169	0.110486	TGGGTCAGCAAGGTTTCTCC	59.890	55.000	0.00	0.00	0.00	3.71
3801	9219	3.117474	TGGTTGGTGTGGAAGGAACAATA	60.117	43.478	0.00	0.00	0.00	1.90
3804	9222	2.714250	TGGTGTGGAAGGAACAATAGGT	59.286	45.455	0.00	0.00	0.00	3.08
3808	9226	4.390909	GTGTGGAAGGAACAATAGGTTACG	59.609	45.833	0.00	0.00	45.58	3.18
3816	9234	0.918619	CAATAGGTTACGTCGCACCG	59.081	55.000	8.22	0.00	38.21	4.94
3830	9248	0.034337	GCACCGGGTGAGTTCAACTA	59.966	55.000	30.65	0.00	35.23	2.24
3832	9250	2.093869	GCACCGGGTGAGTTCAACTATA	60.094	50.000	30.65	0.00	35.23	1.31
3836	9254	6.342906	CACCGGGTGAGTTCAACTATATTTA	58.657	40.000	22.77	0.00	35.23	1.40
3972	9390	4.686972	TCCTCATTCTAGAAATGCTCACG	58.313	43.478	9.71	0.00	0.00	4.35
4045	9463	2.275134	TGTGAGCTCAGCATTTCCAA	57.725	45.000	18.89	0.00	0.00	3.53
4053	9471	2.156917	TCAGCATTTCCAAGCAGACTG	58.843	47.619	0.00	0.00	0.00	3.51
4213	9631	3.057245	GGGAGAAGTTTGTGCCAGAATTC	60.057	47.826	0.00	0.00	31.98	2.17
4272	9691	4.623932	AACCTGCAGATCTACAAGTTCA	57.376	40.909	17.39	0.00	0.00	3.18
4499	10343	7.172532	TGTGATCCCAATTATTAATCTGCGTAC	59.827	37.037	0.00	0.00	0.00	3.67
4543	10387	2.670635	TGCGCATTTGCACGTTTTT	58.329	42.105	5.66	0.00	40.62	1.94
4589	10433	2.496899	TGCCCTGGATTTCTGAGAAC	57.503	50.000	0.00	0.00	0.00	3.01
4663	10511	6.042781	ACCTGTCTTTTGAACTGATACACCTA	59.957	38.462	0.00	0.00	0.00	3.08
4726	11773	3.407443	GTCCGGGGACACTTTCAAA	57.593	52.632	12.90	0.00	44.02	2.69
4727	11774	0.949397	GTCCGGGGACACTTTCAAAC	59.051	55.000	12.90	0.00	44.02	2.93
4728	11775	0.179012	TCCGGGGACACTTTCAAACC	60.179	55.000	0.00	0.00	0.00	3.27
4730	11777	0.179001	CGGGGACACTTTCAAACCCT	60.179	55.000	0.00	0.00	40.31	4.34
4731	11778	1.752788	CGGGGACACTTTCAAACCCTT	60.753	52.381	0.00	0.00	40.31	3.95
4732	11779	2.487625	CGGGGACACTTTCAAACCCTTA	60.488	50.000	0.00	0.00	40.31	2.69
4781	11831	5.718801	TGCAGTTGTATCCCCCTAAATTA	57.281	39.130	0.00	0.00	0.00	1.40
4818	13071	0.110104	CATTGATGGGGAGGGAGAGC	59.890	60.000	0.00	0.00	0.00	4.09
4826	13079	1.258445	GGGAGGGAGAGCGAAAGTGA	61.258	60.000	0.00	0.00	0.00	3.41
4945	13198	5.914898	ATATCGTCCATCCGAACATATGA	57.085	39.130	10.38	0.00	40.73	2.15
4954	13207	4.402056	TCCGAACATATGAGGAGGAAAC	57.598	45.455	10.38	0.00	0.00	2.78
4967	13220	2.027625	GGAAACAGGAGTCGCGGTG	61.028	63.158	6.13	0.00	0.00	4.94
4976	13229	1.202371	GGAGTCGCGGTGATTCATGTA	60.202	52.381	14.72	0.00	35.15	2.29
4984	13237	3.721035	CGGTGATTCATGTATGAGCTCA	58.279	45.455	20.79	20.79	38.19	4.26
5015	13274	9.016623	CATGTATGCTTGATGAACAGTAAATTG	57.983	33.333	0.00	0.00	0.00	2.32
5060	13327	8.632679	TGAACTTTTCTAACATCAAAGATGCTT	58.367	29.630	6.90	4.16	32.73	3.91
5072	13339	1.042229	AGATGCTTGGCTGCACAAAA	58.958	45.000	0.50	0.00	46.33	2.44
5105	13373	5.300792	TGTTTGGACATTTAAGGACCTGAAC	59.699	40.000	0.00	5.64	0.00	3.18
5107	13375	4.651778	TGGACATTTAAGGACCTGAACAG	58.348	43.478	0.00	0.00	0.00	3.16
5112	13380	7.201875	GGACATTTAAGGACCTGAACAGAAAAA	60.202	37.037	0.00	0.00	0.00	1.94
5136	13404	0.529378	CCAGCTCCAAACAATGCTCC	59.471	55.000	0.00	0.00	33.03	4.70
5138	13406	2.618816	CCAGCTCCAAACAATGCTCCTA	60.619	50.000	0.00	0.00	33.03	2.94
5183	13451	5.878332	AATATGCTTTTGTCACGACATCA	57.122	34.783	0.00	0.00	41.52	3.07
5231	13499	1.078709	CAACCACATCACACGCTAGG	58.921	55.000	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
124	4246	3.064134	GCGAAGATTTAAGCAGGTCCTTC	59.936	47.826	0.00	0.00	0.00	3.46
140	4262	2.930826	AAGAGAAAAGGTGGCGAAGA	57.069	45.000	0.00	0.00	0.00	2.87
186	4308	4.988598	CCACGCGTGCACCTCCTT	62.989	66.667	33.17	0.00	0.00	3.36
336	4476	2.940410	GACGAGAGGACCAAACAAACAA	59.060	45.455	0.00	0.00	0.00	2.83
337	4477	2.169769	AGACGAGAGGACCAAACAAACA	59.830	45.455	0.00	0.00	0.00	2.83
338	4478	2.835027	AGACGAGAGGACCAAACAAAC	58.165	47.619	0.00	0.00	0.00	2.93
339	4479	3.202906	CAAGACGAGAGGACCAAACAAA	58.797	45.455	0.00	0.00	0.00	2.83
660	4825	7.771361	TCTCTTGACCAAACTAATGTAAACACA	59.229	33.333	0.00	0.00	0.00	3.72
1042	5637	7.136772	AGTTTACTGAGTGTTTTATTTTCCGC	58.863	34.615	0.00	0.00	0.00	5.54
1050	5645	9.309516	CACTTGACTAGTTTACTGAGTGTTTTA	57.690	33.333	0.00	0.00	33.85	1.52
1058	5653	7.553334	ACTTGAACACTTGACTAGTTTACTGA	58.447	34.615	0.00	0.00	33.85	3.41
1132	5733	1.951602	TGCCATGTCTAATGCAGATGC	59.048	47.619	0.00	0.00	42.50	3.91
1133	5734	2.292569	GGTGCCATGTCTAATGCAGATG	59.707	50.000	0.00	0.00	35.17	2.90
1134	5735	2.174210	AGGTGCCATGTCTAATGCAGAT	59.826	45.455	0.00	0.00	35.17	2.90
1135	5736	1.561076	AGGTGCCATGTCTAATGCAGA	59.439	47.619	0.00	0.00	33.80	4.26
1136	5737	1.674441	CAGGTGCCATGTCTAATGCAG	59.326	52.381	0.00	0.00	33.80	4.41
1183	5784	3.031013	TGAAGAGAACGAGGATGCCATA	58.969	45.455	0.00	0.00	0.00	2.74
1226	5827	3.343421	GTGCGACGGTGTTGGACC	61.343	66.667	0.00	0.00	42.07	4.46
1249	5850	2.432628	CTCGGACCCGTTGCTGAC	60.433	66.667	8.42	0.00	40.74	3.51
1278	5879	0.178891	ACTTGAAGGAGAGGAGGGCA	60.179	55.000	0.00	0.00	0.00	5.36
1812	6908	6.410540	ACTAAGGTTCTGAATAAGGCTCAAG	58.589	40.000	0.00	0.00	0.00	3.02
1839	7253	8.015185	ACAGGTAGTTGTTACTTAAACTGAGA	57.985	34.615	0.00	0.00	38.99	3.27
2309	7723	1.086696	CTCAACTGGTATTGTGCCGG	58.913	55.000	0.00	0.00	38.32	6.13
2338	7752	1.909700	AGCATTTGGAGGCTTCGAAA	58.090	45.000	8.40	8.40	40.60	3.46
3291	8709	2.357034	GAGCCGGTGCGACTTGAA	60.357	61.111	1.90	0.00	44.33	2.69
3370	8788	2.870372	GCGCGCACCATTCTCTTT	59.130	55.556	29.10	0.00	0.00	2.52
3429	8847	3.076621	AGCTTTGACAAGATTGCGATGA	58.923	40.909	0.00	0.00	30.57	2.92
3476	8894	9.932699	CTATAGCTTTGAATTCATTGTTCTCTG	57.067	33.333	9.40	0.00	0.00	3.35
3549	8967	3.639561	TCGGGCTATTGTGATGTAGCTTA	59.360	43.478	0.00	0.00	42.24	3.09
3570	8988	3.431068	GGCCCAAGCTTAGTACTCTCTTC	60.431	52.174	0.00	0.00	39.73	2.87
3598	9016	3.785505	GCAACGTCCATCGCAATTCTTAG	60.786	47.826	0.00	0.00	44.19	2.18
3654	9072	1.359130	TCACAGTGGATCAGAGGAGGA	59.641	52.381	0.00	0.00	0.00	3.71
3663	9081	2.424956	GGGCTTCAAATCACAGTGGATC	59.575	50.000	0.00	0.00	0.00	3.36
3702	9120	4.704540	CCAACCCTTGCAGTCATGTAATAA	59.295	41.667	0.00	0.00	30.17	1.40
3706	9124	1.423541	ACCAACCCTTGCAGTCATGTA	59.576	47.619	0.00	0.00	0.00	2.29
3714	9132	1.415659	CCAAAATCACCAACCCTTGCA	59.584	47.619	0.00	0.00	0.00	4.08
3751	9169	0.253327	GGGCTACCAGGAGTTGAAGG	59.747	60.000	0.00	0.00	36.50	3.46
3801	9219	4.060038	CCCGGTGCGACGTAACCT	62.060	66.667	16.49	0.00	34.06	3.50
3804	9222	3.271706	CTCACCCGGTGCGACGTAA	62.272	63.158	13.19	0.00	32.98	3.18
3808	9226	2.737376	GAACTCACCCGGTGCGAC	60.737	66.667	14.56	4.47	32.98	5.19
3972	9390	2.722201	ATCCGTCAGTCGCCTTCCC	61.722	63.158	0.00	0.00	38.35	3.97
3983	9401	1.164411	GGTGAACATTGCATCCGTCA	58.836	50.000	0.00	0.00	0.00	4.35
4045	9463	1.439543	AAAACCTCTCCCAGTCTGCT	58.560	50.000	0.00	0.00	0.00	4.24
4053	9471	2.488836	TGGGGATCTAAAACCTCTCCC	58.511	52.381	0.00	0.00	44.11	4.30
4213	9631	4.205065	AGAATGCCTCTTTGAGAGACAG	57.795	45.455	6.53	0.00	45.07	3.51
4663	10511	7.944729	ACTCTGCAACCATATGAAAGTTAAT	57.055	32.000	3.65	0.00	0.00	1.40
4724	11771	8.270137	ACAAATAAGGGTTCAAATAAGGGTTT	57.730	30.769	0.00	0.00	0.00	3.27
4726	11773	7.309560	CGAACAAATAAGGGTTCAAATAAGGGT	60.310	37.037	0.00	0.00	42.67	4.34
4727	11774	7.033185	CGAACAAATAAGGGTTCAAATAAGGG	58.967	38.462	0.00	0.00	42.67	3.95
4728	11775	7.540745	CACGAACAAATAAGGGTTCAAATAAGG	59.459	37.037	0.00	0.00	42.67	2.69
4730	11777	7.863375	CACACGAACAAATAAGGGTTCAAATAA	59.137	33.333	0.00	0.00	42.67	1.40
4731	11778	7.364200	CACACGAACAAATAAGGGTTCAAATA	58.636	34.615	0.00	0.00	42.67	1.40
4732	11779	6.212955	CACACGAACAAATAAGGGTTCAAAT	58.787	36.000	0.00	0.00	42.67	2.32
4742	11792	3.004210	ACTGCATGCACACGAACAAATAA	59.996	39.130	18.46	0.00	0.00	1.40
4818	13071	0.460284	CTCACCCCGGATCACTTTCG	60.460	60.000	0.73	0.00	0.00	3.46
4826	13079	3.092511	ATGCAGCTCACCCCGGAT	61.093	61.111	0.73	0.00	0.00	4.18
4925	13178	3.056536	CCTCATATGTTCGGATGGACGAT	60.057	47.826	1.90	0.00	43.11	3.73
4945	13198	1.878656	CGCGACTCCTGTTTCCTCCT	61.879	60.000	0.00	0.00	0.00	3.69
4954	13207	0.179100	ATGAATCACCGCGACTCCTG	60.179	55.000	8.23	0.00	0.00	3.86
4984	13237	4.885325	TGTTCATCAAGCATACATGAGCAT	59.115	37.500	0.00	0.00	34.12	3.79
5033	13292	8.800332	AGCATCTTTGATGTTAGAAAAGTTCAT	58.200	29.630	8.98	0.00	33.56	2.57
5038	13305	6.309737	GCCAAGCATCTTTGATGTTAGAAAAG	59.690	38.462	8.98	0.00	33.19	2.27
5043	13310	4.669318	CAGCCAAGCATCTTTGATGTTAG	58.331	43.478	8.98	1.22	0.00	2.34
5045	13312	2.353406	GCAGCCAAGCATCTTTGATGTT	60.353	45.455	8.98	0.78	0.00	2.71
5067	13334	7.862512	ATGTCCAAACATCACAAAATTTTGT	57.137	28.000	27.01	27.01	42.59	2.83
5072	13339	8.428063	TCCTTAAATGTCCAAACATCACAAAAT	58.572	29.630	0.00	0.00	45.48	1.82
5112	13380	2.485302	GCATTGTTTGGAGCTGGGTTTT	60.485	45.455	0.00	0.00	0.00	2.43
5116	13384	0.529378	GAGCATTGTTTGGAGCTGGG	59.471	55.000	0.00	0.00	37.48	4.45
5117	13385	0.529378	GGAGCATTGTTTGGAGCTGG	59.471	55.000	0.00	0.00	37.48	4.85
5121	13389	5.902613	TTGAATAGGAGCATTGTTTGGAG	57.097	39.130	0.00	0.00	0.00	3.86
5159	13427	7.371126	TGATGTCGTGACAAAAGCATATTTA	57.629	32.000	6.80	0.00	45.41	1.40
5164	13432	3.119743	CCATGATGTCGTGACAAAAGCAT	60.120	43.478	6.80	6.10	45.41	3.79
5167	13435	4.747540	TTCCATGATGTCGTGACAAAAG	57.252	40.909	6.80	0.00	45.41	2.27
5183	13451	1.821216	GTGGTGTTCGGACATTCCAT	58.179	50.000	9.27	0.00	35.24	3.41
5194	13462	0.665835	TGGCAACATTCGTGGTGTTC	59.334	50.000	0.00	0.00	46.17	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.