Multiple sequence alignment - TraesCS2A01G068400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G068400 chr2A 100.000 4099 0 0 1 4099 30200142 30196044 0.000000e+00 7570
1 TraesCS2A01G068400 chr2A 95.768 1394 53 4 2002 3390 30276411 30275019 0.000000e+00 2242
2 TraesCS2A01G068400 chr2A 88.585 1717 129 34 4 1689 30278086 30276406 0.000000e+00 2023
3 TraesCS2A01G068400 chr2A 85.322 1349 185 10 2002 3340 30307637 30306292 0.000000e+00 1382
4 TraesCS2A01G068400 chr2A 84.984 626 88 6 938 1561 30308663 30308042 7.480000e-177 630
5 TraesCS2A01G068400 chr2A 87.383 214 25 2 1429 1641 30308033 30307821 1.140000e-60 244
6 TraesCS2A01G068400 chr2A 85.714 175 24 1 1515 1689 30307805 30307632 2.520000e-42 183
7 TraesCS2A01G068400 chr2A 96.774 62 2 0 4038 4099 30272770 30272709 2.020000e-18 104
8 TraesCS2A01G068400 chr2B 93.400 1394 86 4 2002 3390 45695323 45696715 0.000000e+00 2060
9 TraesCS2A01G068400 chr2B 85.679 1201 169 3 2192 3390 44903379 44904578 0.000000e+00 1262
10 TraesCS2A01G068400 chr2B 91.600 750 42 7 646 1389 45694366 45695100 0.000000e+00 1016
11 TraesCS2A01G068400 chr2B 80.303 1056 159 27 559 1597 44902371 44903394 0.000000e+00 752
12 TraesCS2A01G068400 chr2B 79.600 951 122 41 1 917 44901387 44902299 2.090000e-172 616
13 TraesCS2A01G068400 chr2B 95.600 250 9 2 1441 1689 45695080 45695328 2.300000e-107 399
14 TraesCS2A01G068400 chr2D 88.655 1710 134 30 4 1690 28085875 28084203 0.000000e+00 2028
15 TraesCS2A01G068400 chr2D 92.539 1394 98 4 2002 3390 28084209 28082817 0.000000e+00 1993
16 TraesCS2A01G068400 chr2D 84.957 1396 197 13 2002 3390 28423611 28422222 0.000000e+00 1402
17 TraesCS2A01G068400 chr2D 83.394 1385 206 15 2011 3390 28071637 28070272 0.000000e+00 1262
18 TraesCS2A01G068400 chr2D 80.321 1560 188 59 1 1529 28073481 28072010 0.000000e+00 1070
19 TraesCS2A01G068400 chr2D 95.084 651 28 4 3392 4040 15746264 15745616 0.000000e+00 1022
20 TraesCS2A01G068400 chr2D 88.026 618 54 6 324 941 28090811 28090214 0.000000e+00 713
21 TraesCS2A01G068400 chr2D 86.792 583 75 2 980 1561 28424402 28423821 0.000000e+00 649
22 TraesCS2A01G068400 chr2D 93.539 356 20 1 3035 3390 28079390 28079038 1.010000e-145 527
23 TraesCS2A01G068400 chr2D 92.827 237 7 7 61 288 28091045 28090810 6.570000e-88 335
24 TraesCS2A01G068400 chr2D 85.308 211 30 1 1482 1692 28071847 28071638 2.480000e-52 217
25 TraesCS2A01G068400 chr7D 95.712 653 24 4 3391 4040 617030153 617030804 0.000000e+00 1048
26 TraesCS2A01G068400 chr7D 91.271 653 54 3 3388 4040 556709315 556709964 0.000000e+00 887
27 TraesCS2A01G068400 chr6A 95.385 650 29 1 3391 4040 446737418 446736770 0.000000e+00 1033
28 TraesCS2A01G068400 chr4D 94.939 652 30 3 3391 4040 53737273 53736623 0.000000e+00 1018
29 TraesCS2A01G068400 chr3B 91.515 660 50 6 3385 4040 31258991 31258334 0.000000e+00 904
30 TraesCS2A01G068400 chr7A 89.618 655 62 6 3391 4040 581150542 581149889 0.000000e+00 828
31 TraesCS2A01G068400 chr7A 88.906 658 64 9 3391 4040 657528277 657528933 0.000000e+00 802
32 TraesCS2A01G068400 chr7A 88.957 652 57 13 3393 4040 676387474 676388114 0.000000e+00 791
33 TraesCS2A01G068400 chr3D 93.023 258 17 1 1747 2004 86360950 86361206 3.870000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G068400 chr2A 30196044 30200142 4098 True 7570.000000 7570 100.000000 1 4099 1 chr2A.!!$R1 4098
1 TraesCS2A01G068400 chr2A 30272709 30278086 5377 True 1456.333333 2242 93.709000 4 4099 3 chr2A.!!$R2 4095
2 TraesCS2A01G068400 chr2A 30306292 30308663 2371 True 609.750000 1382 85.850750 938 3340 4 chr2A.!!$R3 2402
3 TraesCS2A01G068400 chr2B 45694366 45696715 2349 False 1158.333333 2060 93.533333 646 3390 3 chr2B.!!$F2 2744
4 TraesCS2A01G068400 chr2B 44901387 44904578 3191 False 876.666667 1262 81.860667 1 3390 3 chr2B.!!$F1 3389
5 TraesCS2A01G068400 chr2D 28079038 28085875 6837 True 1516.000000 2028 91.577667 4 3390 3 chr2D.!!$R3 3386
6 TraesCS2A01G068400 chr2D 28422222 28424402 2180 True 1025.500000 1402 85.874500 980 3390 2 chr2D.!!$R5 2410
7 TraesCS2A01G068400 chr2D 15745616 15746264 648 True 1022.000000 1022 95.084000 3392 4040 1 chr2D.!!$R1 648
8 TraesCS2A01G068400 chr2D 28070272 28073481 3209 True 849.666667 1262 83.007667 1 3390 3 chr2D.!!$R2 3389
9 TraesCS2A01G068400 chr2D 28090214 28091045 831 True 524.000000 713 90.426500 61 941 2 chr2D.!!$R4 880
10 TraesCS2A01G068400 chr7D 617030153 617030804 651 False 1048.000000 1048 95.712000 3391 4040 1 chr7D.!!$F2 649
11 TraesCS2A01G068400 chr7D 556709315 556709964 649 False 887.000000 887 91.271000 3388 4040 1 chr7D.!!$F1 652
12 TraesCS2A01G068400 chr6A 446736770 446737418 648 True 1033.000000 1033 95.385000 3391 4040 1 chr6A.!!$R1 649
13 TraesCS2A01G068400 chr4D 53736623 53737273 650 True 1018.000000 1018 94.939000 3391 4040 1 chr4D.!!$R1 649
14 TraesCS2A01G068400 chr3B 31258334 31258991 657 True 904.000000 904 91.515000 3385 4040 1 chr3B.!!$R1 655
15 TraesCS2A01G068400 chr7A 581149889 581150542 653 True 828.000000 828 89.618000 3391 4040 1 chr7A.!!$R1 649
16 TraesCS2A01G068400 chr7A 657528277 657528933 656 False 802.000000 802 88.906000 3391 4040 1 chr7A.!!$F1 649
17 TraesCS2A01G068400 chr7A 676387474 676388114 640 False 791.000000 791 88.957000 3393 4040 1 chr7A.!!$F2 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 1078 0.035439 ATGTGGCCGGGTAACTCTTG 60.035 55.0 2.18 0.0 0.0 3.02 F
1797 2831 0.107703 CCAACGCTGGGCTCTAATGA 60.108 55.0 0.00 0.0 39.3 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2966 0.099259 CCGTATCGGCAGTTACGTGA 59.901 55.0 20.74 0.0 41.75 4.35 R
3581 4633 0.175989 GGGTAGTGGCTAGTCAGTGC 59.824 60.0 15.09 13.2 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.350816 TCTTTTCCTTCCTCTCATTGGTCA 59.649 41.667 0.00 0.00 0.00 4.02
109 113 2.792947 GCTGCCCCGAATCGAGGTA 61.793 63.158 3.36 0.00 0.00 3.08
121 125 5.450137 CCGAATCGAGGTACTACTTTGACAT 60.450 44.000 3.36 0.00 41.55 3.06
156 160 6.115446 TCTAGCTTGTTTTGCAGCTATACAT 58.885 36.000 3.83 0.00 38.89 2.29
157 161 4.990257 AGCTTGTTTTGCAGCTATACATG 58.010 39.130 1.38 5.29 35.68 3.21
161 165 4.588899 TGTTTTGCAGCTATACATGGTCT 58.411 39.130 0.00 0.00 0.00 3.85
162 166 4.635765 TGTTTTGCAGCTATACATGGTCTC 59.364 41.667 0.00 0.00 0.00 3.36
163 167 4.486125 TTTGCAGCTATACATGGTCTCA 57.514 40.909 0.00 0.00 0.00 3.27
164 168 4.486125 TTGCAGCTATACATGGTCTCAA 57.514 40.909 0.00 0.00 0.00 3.02
186 198 3.316308 AGTCTCAACCAAACATTCAGCAC 59.684 43.478 0.00 0.00 0.00 4.40
267 284 1.539388 TGTTTGTTCTAATGCCCTGCG 59.461 47.619 0.00 0.00 0.00 5.18
332 350 6.588756 TCCAGTACTTCTTGTTAACATTAGCG 59.411 38.462 9.56 2.63 0.00 4.26
422 460 2.331451 GGTGTTGTTGTCGCTGCC 59.669 61.111 0.00 0.00 0.00 4.85
439 483 1.066303 TGCCCATCACGTGTTTGTTTC 59.934 47.619 16.51 6.58 0.00 2.78
575 622 4.394300 GGATGTCTGAATCCAACTTCTGTG 59.606 45.833 11.54 0.00 44.85 3.66
614 1059 9.350357 CATAACTAAAAGCGTTCAGTAGAGTTA 57.650 33.333 0.00 0.00 32.97 2.24
626 1071 2.034124 GTAGAGTTATGTGGCCGGGTA 58.966 52.381 2.18 0.00 0.00 3.69
632 1077 1.575419 TATGTGGCCGGGTAACTCTT 58.425 50.000 2.18 0.00 0.00 2.85
633 1078 0.035439 ATGTGGCCGGGTAACTCTTG 60.035 55.000 2.18 0.00 0.00 3.02
712 1163 2.549064 TGGCAGTAGCGCATCATAAT 57.451 45.000 11.47 0.00 43.41 1.28
713 1164 2.145536 TGGCAGTAGCGCATCATAATG 58.854 47.619 11.47 3.55 43.41 1.90
716 1167 3.369147 GGCAGTAGCGCATCATAATGTAG 59.631 47.826 11.47 0.00 43.41 2.74
726 1177 5.466728 CGCATCATAATGTAGGCAAAGTACT 59.533 40.000 0.00 0.00 35.18 2.73
743 1195 5.584253 AGTACTAAGTGCTGATGTACCAG 57.416 43.478 0.00 0.00 35.45 4.00
903 1363 3.775316 ACCAAGTCAAGTATAGGTCCCAG 59.225 47.826 0.00 0.00 0.00 4.45
931 1392 0.966920 ACACCCGGTCAACTAGTCAG 59.033 55.000 0.00 0.00 0.00 3.51
936 1397 1.336887 CCGGTCAACTAGTCAGGTGTG 60.337 57.143 0.00 0.00 40.64 3.82
952 1413 2.347731 GTGTGCAAGTCTACTTAGGGC 58.652 52.381 0.00 0.00 34.28 5.19
973 1434 4.393680 GGCGACACATATAACACAAGGAAA 59.606 41.667 0.00 0.00 0.00 3.13
974 1435 5.106475 GGCGACACATATAACACAAGGAAAA 60.106 40.000 0.00 0.00 0.00 2.29
1013 1480 2.512692 TTAGACATGGCACCTGCAAT 57.487 45.000 0.00 0.00 44.36 3.56
1035 1502 0.525242 CTCTGCGCTCTCTTTCTCCG 60.525 60.000 9.73 0.00 0.00 4.63
1079 1546 6.962182 TCACCCATCTTCTCATATTGTTCTT 58.038 36.000 0.00 0.00 0.00 2.52
1096 1563 1.831389 CTTGTCCAACACCGTCGCAG 61.831 60.000 0.00 0.00 0.00 5.18
1421 1891 7.831193 ACAGCTACAGTTTATGATCCTTTCAAT 59.169 33.333 0.00 0.00 38.03 2.57
1690 2724 4.164221 TGAGCCTTATTCAGAACCTTAGGG 59.836 45.833 2.32 0.00 38.88 3.53
1691 2725 3.117851 AGCCTTATTCAGAACCTTAGGGC 60.118 47.826 2.32 7.14 37.15 5.19
1692 2726 3.371595 GCCTTATTCAGAACCTTAGGGCA 60.372 47.826 2.32 0.00 36.94 5.36
1693 2727 4.689983 GCCTTATTCAGAACCTTAGGGCAT 60.690 45.833 2.32 0.00 36.94 4.40
1694 2728 5.066593 CCTTATTCAGAACCTTAGGGCATC 58.933 45.833 2.32 0.00 35.63 3.91
1695 2729 5.163152 CCTTATTCAGAACCTTAGGGCATCT 60.163 44.000 2.32 0.26 33.91 2.90
1696 2730 4.870021 ATTCAGAACCTTAGGGCATCTT 57.130 40.909 2.32 0.00 32.08 2.40
1697 2731 3.914426 TCAGAACCTTAGGGCATCTTC 57.086 47.619 2.32 0.00 32.08 2.87
1698 2732 3.181329 TCAGAACCTTAGGGCATCTTCA 58.819 45.455 2.32 0.00 32.08 3.02
1699 2733 3.587061 TCAGAACCTTAGGGCATCTTCAA 59.413 43.478 2.32 0.00 32.08 2.69
1700 2734 4.228210 TCAGAACCTTAGGGCATCTTCAAT 59.772 41.667 2.32 0.00 32.08 2.57
1701 2735 4.337555 CAGAACCTTAGGGCATCTTCAATG 59.662 45.833 2.32 0.00 32.08 2.82
1702 2736 2.659428 ACCTTAGGGCATCTTCAATGC 58.341 47.619 2.32 1.40 43.85 3.56
1703 2737 2.025037 ACCTTAGGGCATCTTCAATGCA 60.025 45.455 11.69 0.00 46.21 3.96
1704 2738 3.025978 CCTTAGGGCATCTTCAATGCAA 58.974 45.455 11.69 0.00 46.21 4.08
1705 2739 3.067742 CCTTAGGGCATCTTCAATGCAAG 59.932 47.826 11.69 6.89 46.21 4.01
1706 2740 1.481871 AGGGCATCTTCAATGCAAGG 58.518 50.000 11.69 0.00 46.21 3.61
1707 2741 0.179092 GGGCATCTTCAATGCAAGGC 60.179 55.000 11.69 0.00 46.21 4.35
1708 2742 0.526954 GGCATCTTCAATGCAAGGCG 60.527 55.000 11.69 0.00 46.21 5.52
1709 2743 1.143969 GCATCTTCAATGCAAGGCGC 61.144 55.000 0.00 0.00 44.00 6.53
1710 2744 0.454600 CATCTTCAATGCAAGGCGCT 59.545 50.000 7.64 0.00 43.06 5.92
1711 2745 1.135199 CATCTTCAATGCAAGGCGCTT 60.135 47.619 7.64 0.00 43.06 4.68
1712 2746 0.241749 TCTTCAATGCAAGGCGCTTG 59.758 50.000 7.64 11.20 43.57 4.01
1719 2753 2.410469 CAAGGCGCTTGCATAGGC 59.590 61.111 7.64 0.00 41.71 3.93
1724 2758 3.717899 CGCTTGCATAGGCGCTAA 58.282 55.556 7.64 0.00 44.64 3.09
1725 2759 2.238353 CGCTTGCATAGGCGCTAAT 58.762 52.632 7.64 0.00 44.64 1.73
1726 2760 0.110509 CGCTTGCATAGGCGCTAATG 60.111 55.000 7.64 12.62 44.64 1.90
1727 2761 0.239347 GCTTGCATAGGCGCTAATGG 59.761 55.000 19.37 8.14 45.35 3.16
1728 2762 1.882912 CTTGCATAGGCGCTAATGGA 58.117 50.000 19.37 15.64 45.35 3.41
1729 2763 2.430465 CTTGCATAGGCGCTAATGGAT 58.570 47.619 19.37 0.00 45.35 3.41
1730 2764 3.599343 CTTGCATAGGCGCTAATGGATA 58.401 45.455 19.37 9.91 45.35 2.59
1731 2765 3.694043 TGCATAGGCGCTAATGGATAA 57.306 42.857 19.37 0.00 45.35 1.75
1732 2766 4.014569 TGCATAGGCGCTAATGGATAAA 57.985 40.909 19.37 0.00 45.35 1.40
1733 2767 4.393834 TGCATAGGCGCTAATGGATAAAA 58.606 39.130 19.37 0.00 45.35 1.52
1734 2768 4.824537 TGCATAGGCGCTAATGGATAAAAA 59.175 37.500 19.37 0.00 45.35 1.94
1735 2769 5.476599 TGCATAGGCGCTAATGGATAAAAAT 59.523 36.000 19.37 0.00 45.35 1.82
1736 2770 6.015519 TGCATAGGCGCTAATGGATAAAAATT 60.016 34.615 19.37 0.00 45.35 1.82
1737 2771 6.868339 GCATAGGCGCTAATGGATAAAAATTT 59.132 34.615 19.37 0.00 0.00 1.82
1738 2772 8.026607 GCATAGGCGCTAATGGATAAAAATTTA 58.973 33.333 19.37 0.00 0.00 1.40
1739 2773 9.906660 CATAGGCGCTAATGGATAAAAATTTAA 57.093 29.630 7.64 0.00 0.00 1.52
1767 2801 8.681486 ACCGTAAAATAAAAAGACTGGTTAGT 57.319 30.769 0.00 0.00 40.66 2.24
1768 2802 8.562052 ACCGTAAAATAAAAAGACTGGTTAGTG 58.438 33.333 0.00 0.00 37.25 2.74
1769 2803 8.562052 CCGTAAAATAAAAAGACTGGTTAGTGT 58.438 33.333 0.00 0.00 37.25 3.55
1770 2804 9.940166 CGTAAAATAAAAAGACTGGTTAGTGTT 57.060 29.630 0.00 0.00 41.68 3.32
1776 2810 5.986004 AAAGACTGGTTAGTGTTTTCTCG 57.014 39.130 0.00 0.00 45.05 4.04
1777 2811 3.391049 AGACTGGTTAGTGTTTTCTCGC 58.609 45.455 0.00 0.00 37.25 5.03
1778 2812 2.479275 GACTGGTTAGTGTTTTCTCGCC 59.521 50.000 0.00 0.00 37.25 5.54
1779 2813 1.804748 CTGGTTAGTGTTTTCTCGCCC 59.195 52.381 0.00 0.00 0.00 6.13
1780 2814 1.141254 TGGTTAGTGTTTTCTCGCCCA 59.859 47.619 0.00 0.00 0.00 5.36
1781 2815 2.223745 GGTTAGTGTTTTCTCGCCCAA 58.776 47.619 0.00 0.00 0.00 4.12
1782 2816 2.031420 GGTTAGTGTTTTCTCGCCCAAC 60.031 50.000 0.00 0.00 0.00 3.77
1783 2817 1.504359 TAGTGTTTTCTCGCCCAACG 58.496 50.000 0.00 0.00 45.62 4.10
1784 2818 1.370051 GTGTTTTCTCGCCCAACGC 60.370 57.895 0.00 0.00 43.23 4.84
1785 2819 1.525077 TGTTTTCTCGCCCAACGCT 60.525 52.632 0.00 0.00 43.23 5.07
1786 2820 1.082104 GTTTTCTCGCCCAACGCTG 60.082 57.895 0.00 0.00 43.23 5.18
1787 2821 2.258013 TTTTCTCGCCCAACGCTGG 61.258 57.895 0.00 0.00 43.23 4.85
1795 2829 4.963878 CCAACGCTGGGCTCTAAT 57.036 55.556 0.00 0.00 39.30 1.73
1796 2830 2.397751 CCAACGCTGGGCTCTAATG 58.602 57.895 0.00 0.00 39.30 1.90
1797 2831 0.107703 CCAACGCTGGGCTCTAATGA 60.108 55.000 0.00 0.00 39.30 2.57
1798 2832 1.009829 CAACGCTGGGCTCTAATGAC 58.990 55.000 0.00 0.00 0.00 3.06
1799 2833 0.613260 AACGCTGGGCTCTAATGACA 59.387 50.000 0.00 0.00 0.00 3.58
1800 2834 0.176680 ACGCTGGGCTCTAATGACAG 59.823 55.000 0.00 0.00 0.00 3.51
1801 2835 0.531532 CGCTGGGCTCTAATGACAGG 60.532 60.000 0.00 0.00 0.00 4.00
1802 2836 0.817229 GCTGGGCTCTAATGACAGGC 60.817 60.000 0.00 0.00 34.44 4.85
1803 2837 0.531532 CTGGGCTCTAATGACAGGCG 60.532 60.000 0.00 0.00 36.04 5.52
1804 2838 1.889573 GGGCTCTAATGACAGGCGC 60.890 63.158 0.00 0.00 36.04 6.53
1805 2839 1.144936 GGCTCTAATGACAGGCGCT 59.855 57.895 7.64 0.00 0.00 5.92
1806 2840 0.389391 GGCTCTAATGACAGGCGCTA 59.611 55.000 7.64 0.00 0.00 4.26
1807 2841 1.202533 GGCTCTAATGACAGGCGCTAA 60.203 52.381 7.64 0.00 0.00 3.09
1808 2842 2.548920 GGCTCTAATGACAGGCGCTAAT 60.549 50.000 7.64 0.00 0.00 1.73
1809 2843 2.734079 GCTCTAATGACAGGCGCTAATC 59.266 50.000 7.64 2.59 0.00 1.75
1810 2844 3.800261 GCTCTAATGACAGGCGCTAATCA 60.800 47.826 7.64 8.98 0.00 2.57
1811 2845 4.371786 CTCTAATGACAGGCGCTAATCAA 58.628 43.478 7.64 0.00 0.00 2.57
1812 2846 4.960938 TCTAATGACAGGCGCTAATCAAT 58.039 39.130 7.64 4.28 0.00 2.57
1813 2847 4.991056 TCTAATGACAGGCGCTAATCAATC 59.009 41.667 7.64 0.00 0.00 2.67
1814 2848 1.570813 TGACAGGCGCTAATCAATCG 58.429 50.000 7.64 0.00 0.00 3.34
1821 2855 3.861569 GCGCTAATCAATCGCTAAACT 57.138 42.857 0.00 0.00 44.79 2.66
1822 2856 4.966850 GCGCTAATCAATCGCTAAACTA 57.033 40.909 0.00 0.00 44.79 2.24
1823 2857 5.324739 GCGCTAATCAATCGCTAAACTAA 57.675 39.130 0.00 0.00 44.79 2.24
1824 2858 5.131204 GCGCTAATCAATCGCTAAACTAAC 58.869 41.667 0.00 0.00 44.79 2.34
1825 2859 5.667175 CGCTAATCAATCGCTAAACTAACC 58.333 41.667 0.00 0.00 0.00 2.85
1826 2860 5.609696 CGCTAATCAATCGCTAAACTAACCG 60.610 44.000 0.00 0.00 0.00 4.44
1827 2861 5.233689 GCTAATCAATCGCTAAACTAACCGT 59.766 40.000 0.00 0.00 0.00 4.83
1828 2862 6.418819 GCTAATCAATCGCTAAACTAACCGTA 59.581 38.462 0.00 0.00 0.00 4.02
1829 2863 7.043192 GCTAATCAATCGCTAAACTAACCGTAA 60.043 37.037 0.00 0.00 0.00 3.18
1830 2864 6.823678 ATCAATCGCTAAACTAACCGTAAG 57.176 37.500 0.00 0.00 0.00 2.34
1831 2865 5.953183 TCAATCGCTAAACTAACCGTAAGA 58.047 37.500 0.00 0.00 43.02 2.10
1832 2866 5.801947 TCAATCGCTAAACTAACCGTAAGAC 59.198 40.000 0.00 0.00 43.02 3.01
1833 2867 4.764679 TCGCTAAACTAACCGTAAGACA 57.235 40.909 0.00 0.00 43.02 3.41
1834 2868 4.726416 TCGCTAAACTAACCGTAAGACAG 58.274 43.478 0.00 0.00 43.02 3.51
1835 2869 4.455533 TCGCTAAACTAACCGTAAGACAGA 59.544 41.667 0.00 0.00 43.02 3.41
1836 2870 5.124457 TCGCTAAACTAACCGTAAGACAGAT 59.876 40.000 0.00 0.00 43.02 2.90
1837 2871 5.454877 CGCTAAACTAACCGTAAGACAGATC 59.545 44.000 0.00 0.00 43.02 2.75
1838 2872 5.454877 GCTAAACTAACCGTAAGACAGATCG 59.545 44.000 0.00 0.00 43.02 3.69
1839 2873 3.417690 ACTAACCGTAAGACAGATCGC 57.582 47.619 0.00 0.00 43.02 4.58
1840 2874 3.015327 ACTAACCGTAAGACAGATCGCT 58.985 45.455 0.00 0.00 43.02 4.93
1841 2875 4.194640 ACTAACCGTAAGACAGATCGCTA 58.805 43.478 0.00 0.00 43.02 4.26
1842 2876 3.694535 AACCGTAAGACAGATCGCTAG 57.305 47.619 0.00 0.00 43.02 3.42
1843 2877 1.334243 ACCGTAAGACAGATCGCTAGC 59.666 52.381 4.06 4.06 43.02 3.42
1844 2878 1.333931 CCGTAAGACAGATCGCTAGCA 59.666 52.381 16.45 2.17 43.02 3.49
1845 2879 2.376956 CGTAAGACAGATCGCTAGCAC 58.623 52.381 16.45 5.50 43.02 4.40
1846 2880 2.223272 CGTAAGACAGATCGCTAGCACA 60.223 50.000 16.45 0.00 43.02 4.57
1847 2881 3.549019 CGTAAGACAGATCGCTAGCACAT 60.549 47.826 16.45 5.64 43.02 3.21
1848 2882 2.791383 AGACAGATCGCTAGCACATC 57.209 50.000 16.45 14.76 0.00 3.06
1849 2883 1.001924 AGACAGATCGCTAGCACATCG 60.002 52.381 16.45 12.87 0.00 3.84
1850 2884 0.596083 ACAGATCGCTAGCACATCGC 60.596 55.000 16.45 0.00 42.91 4.58
1862 2896 2.555199 GCACATCGCTCCAAACTATCT 58.445 47.619 0.00 0.00 37.77 1.98
1863 2897 2.939103 GCACATCGCTCCAAACTATCTT 59.061 45.455 0.00 0.00 37.77 2.40
1864 2898 3.242543 GCACATCGCTCCAAACTATCTTG 60.243 47.826 0.00 0.00 37.77 3.02
1865 2899 4.183865 CACATCGCTCCAAACTATCTTGA 58.816 43.478 0.00 0.00 0.00 3.02
1866 2900 4.269603 CACATCGCTCCAAACTATCTTGAG 59.730 45.833 0.00 0.00 0.00 3.02
1867 2901 4.160439 ACATCGCTCCAAACTATCTTGAGA 59.840 41.667 0.00 0.00 0.00 3.27
1868 2902 4.801330 TCGCTCCAAACTATCTTGAGAA 57.199 40.909 0.00 0.00 0.00 2.87
1869 2903 5.147330 TCGCTCCAAACTATCTTGAGAAA 57.853 39.130 0.00 0.00 0.00 2.52
1870 2904 5.547465 TCGCTCCAAACTATCTTGAGAAAA 58.453 37.500 0.00 0.00 0.00 2.29
1871 2905 5.995282 TCGCTCCAAACTATCTTGAGAAAAA 59.005 36.000 0.00 0.00 0.00 1.94
1888 2922 1.873863 AAAAAGGCTAAGCGTCCGC 59.126 52.632 2.94 2.94 42.33 5.54
1889 2923 1.583495 AAAAAGGCTAAGCGTCCGCC 61.583 55.000 8.23 4.99 44.09 6.13
1892 2926 4.893601 GGCTAAGCGTCCGCCTCC 62.894 72.222 8.23 1.03 43.17 4.30
1893 2927 4.143333 GCTAAGCGTCCGCCTCCA 62.143 66.667 8.23 0.00 43.17 3.86
1894 2928 2.105128 CTAAGCGTCCGCCTCCAG 59.895 66.667 8.23 0.00 43.17 3.86
1895 2929 4.143333 TAAGCGTCCGCCTCCAGC 62.143 66.667 8.23 0.00 43.17 4.85
1899 2933 4.379243 CGTCCGCCTCCAGCTGTT 62.379 66.667 13.81 0.00 40.39 3.16
1900 2934 2.743928 GTCCGCCTCCAGCTGTTG 60.744 66.667 13.81 4.56 40.39 3.33
1901 2935 4.704833 TCCGCCTCCAGCTGTTGC 62.705 66.667 13.81 10.87 40.39 4.17
1904 2938 3.426568 GCCTCCAGCTGTTGCGTC 61.427 66.667 13.81 0.00 45.42 5.19
1905 2939 3.114616 CCTCCAGCTGTTGCGTCG 61.115 66.667 13.81 0.00 45.42 5.12
1906 2940 2.049156 CTCCAGCTGTTGCGTCGA 60.049 61.111 13.81 0.00 45.42 4.20
1907 2941 2.355837 TCCAGCTGTTGCGTCGAC 60.356 61.111 13.81 5.18 45.42 4.20
1908 2942 2.661537 CCAGCTGTTGCGTCGACA 60.662 61.111 17.16 0.00 45.42 4.35
1909 2943 2.546321 CAGCTGTTGCGTCGACAC 59.454 61.111 17.16 6.48 45.42 3.67
1910 2944 2.661866 AGCTGTTGCGTCGACACC 60.662 61.111 17.16 6.31 45.42 4.16
1911 2945 4.059459 GCTGTTGCGTCGACACCG 62.059 66.667 17.16 2.55 37.07 4.94
1912 2946 2.354188 CTGTTGCGTCGACACCGA 60.354 61.111 17.16 2.59 43.35 4.69
1913 2947 2.354188 TGTTGCGTCGACACCGAG 60.354 61.111 17.16 0.00 46.52 4.63
1914 2948 2.354305 GTTGCGTCGACACCGAGT 60.354 61.111 17.16 0.00 46.52 4.18
1915 2949 1.081906 GTTGCGTCGACACCGAGTA 60.082 57.895 17.16 0.00 46.52 2.59
1916 2950 1.063951 GTTGCGTCGACACCGAGTAG 61.064 60.000 17.16 0.00 46.52 2.57
1917 2951 2.099831 GCGTCGACACCGAGTAGG 59.900 66.667 17.16 0.00 46.52 3.18
1918 2952 2.393768 GCGTCGACACCGAGTAGGA 61.394 63.158 17.16 0.00 46.52 2.94
1919 2953 1.423056 CGTCGACACCGAGTAGGAC 59.577 63.158 17.16 0.00 46.52 3.85
1920 2954 1.423056 GTCGACACCGAGTAGGACG 59.577 63.158 11.55 0.00 46.52 4.79
1921 2955 2.099831 CGACACCGAGTAGGACGC 59.900 66.667 0.00 0.00 45.00 5.19
1922 2956 2.488820 GACACCGAGTAGGACGCC 59.511 66.667 0.00 0.00 45.00 5.68
1923 2957 2.282674 ACACCGAGTAGGACGCCA 60.283 61.111 0.00 0.00 45.00 5.69
1924 2958 2.267681 GACACCGAGTAGGACGCCAG 62.268 65.000 0.00 0.00 45.00 4.85
1925 2959 2.754658 ACCGAGTAGGACGCCAGG 60.755 66.667 0.00 0.00 45.00 4.45
1926 2960 2.439701 CCGAGTAGGACGCCAGGA 60.440 66.667 0.00 0.00 45.00 3.86
1927 2961 1.828660 CCGAGTAGGACGCCAGGAT 60.829 63.158 0.00 0.00 45.00 3.24
1928 2962 1.392710 CCGAGTAGGACGCCAGGATT 61.393 60.000 0.00 0.00 45.00 3.01
1929 2963 0.460311 CGAGTAGGACGCCAGGATTT 59.540 55.000 0.00 0.00 0.00 2.17
1930 2964 1.802880 CGAGTAGGACGCCAGGATTTG 60.803 57.143 0.00 0.00 0.00 2.32
1931 2965 1.207329 GAGTAGGACGCCAGGATTTGT 59.793 52.381 0.00 0.00 0.00 2.83
1932 2966 1.628846 AGTAGGACGCCAGGATTTGTT 59.371 47.619 0.00 0.00 0.00 2.83
1933 2967 2.007608 GTAGGACGCCAGGATTTGTTC 58.992 52.381 0.00 0.00 0.00 3.18
1934 2968 0.400213 AGGACGCCAGGATTTGTTCA 59.600 50.000 0.00 0.00 0.00 3.18
1935 2969 0.521735 GGACGCCAGGATTTGTTCAC 59.478 55.000 0.00 0.00 0.00 3.18
1936 2970 0.165944 GACGCCAGGATTTGTTCACG 59.834 55.000 0.00 0.00 0.00 4.35
1937 2971 0.534203 ACGCCAGGATTTGTTCACGT 60.534 50.000 0.00 0.00 0.00 4.49
1938 2972 1.270412 ACGCCAGGATTTGTTCACGTA 60.270 47.619 0.00 0.00 0.00 3.57
1939 2973 1.801771 CGCCAGGATTTGTTCACGTAA 59.198 47.619 0.00 0.00 0.00 3.18
1940 2974 2.412325 CGCCAGGATTTGTTCACGTAAC 60.412 50.000 0.00 0.00 38.67 2.50
1941 2975 2.812011 GCCAGGATTTGTTCACGTAACT 59.188 45.455 0.00 0.00 38.99 2.24
1942 2976 3.364964 GCCAGGATTTGTTCACGTAACTG 60.365 47.826 0.00 0.00 38.99 3.16
1943 2977 3.364964 CCAGGATTTGTTCACGTAACTGC 60.365 47.826 0.00 0.00 38.99 4.40
1944 2978 2.812011 AGGATTTGTTCACGTAACTGCC 59.188 45.455 0.00 0.00 38.99 4.85
1945 2979 2.412325 GGATTTGTTCACGTAACTGCCG 60.412 50.000 0.00 0.00 38.99 5.69
1946 2980 1.937278 TTTGTTCACGTAACTGCCGA 58.063 45.000 0.00 0.00 38.99 5.54
1947 2981 2.157834 TTGTTCACGTAACTGCCGAT 57.842 45.000 0.00 0.00 38.99 4.18
1948 2982 3.300852 TTGTTCACGTAACTGCCGATA 57.699 42.857 0.00 0.00 38.99 2.92
1949 2983 2.598589 TGTTCACGTAACTGCCGATAC 58.401 47.619 0.00 0.00 38.99 2.24
1951 2985 3.601753 GTTCACGTAACTGCCGATACGG 61.602 54.545 19.04 5.79 46.79 4.02
1960 2994 4.861883 CCGATACGGCAGGATACG 57.138 61.111 0.00 0.00 41.17 3.06
1961 2995 2.250646 CCGATACGGCAGGATACGA 58.749 57.895 0.00 0.00 41.17 3.43
1962 2996 0.594602 CCGATACGGCAGGATACGAA 59.405 55.000 0.00 0.00 41.17 3.85
1963 2997 1.201647 CCGATACGGCAGGATACGAAT 59.798 52.381 0.00 0.00 41.17 3.34
1964 2998 2.516923 CGATACGGCAGGATACGAATC 58.483 52.381 0.00 0.00 46.39 2.52
1965 2999 5.810021 CCGATACGGCAGGATACGAATCC 62.810 56.522 0.00 0.00 45.51 3.01
1973 3007 3.017232 GATACGAATCCTAGCGCCG 57.983 57.895 2.29 0.00 0.00 6.46
1974 3008 0.456312 GATACGAATCCTAGCGCCGG 60.456 60.000 2.29 5.15 0.00 6.13
1975 3009 2.488087 ATACGAATCCTAGCGCCGGC 62.488 60.000 19.07 19.07 40.37 6.13
2003 3037 4.011517 CCCCGTTGTACGTGCCCT 62.012 66.667 0.00 0.00 40.58 5.19
2004 3038 2.031465 CCCGTTGTACGTGCCCTT 59.969 61.111 0.00 0.00 40.58 3.95
2005 3039 1.292860 CCCGTTGTACGTGCCCTTA 59.707 57.895 0.00 0.00 40.58 2.69
2006 3040 0.738412 CCCGTTGTACGTGCCCTTAG 60.738 60.000 0.00 0.00 40.58 2.18
2007 3041 0.037975 CCGTTGTACGTGCCCTTAGT 60.038 55.000 0.00 0.00 40.58 2.24
2034 3068 7.954835 TGCTCAGTTTAAGTAACAACTACCTA 58.045 34.615 0.00 0.00 39.30 3.08
2068 3102 3.146066 TCCACCAAACTCTGTAACATGC 58.854 45.455 0.00 0.00 0.00 4.06
2097 3131 7.180229 TCACTCATTTATCTTGGACTAGACCAA 59.820 37.037 22.61 22.61 46.02 3.67
2138 3172 5.018809 AGTACCATCTTGCATTGGAAACAT 58.981 37.500 15.52 0.00 42.32 2.71
2139 3173 4.196626 ACCATCTTGCATTGGAAACATG 57.803 40.909 15.52 0.00 42.32 3.21
2140 3174 3.579586 ACCATCTTGCATTGGAAACATGT 59.420 39.130 15.52 0.00 42.32 3.21
2141 3175 4.040706 ACCATCTTGCATTGGAAACATGTT 59.959 37.500 15.52 4.92 42.32 2.71
2142 3176 5.245751 ACCATCTTGCATTGGAAACATGTTA 59.754 36.000 12.39 0.00 42.32 2.41
2143 3177 5.577945 CCATCTTGCATTGGAAACATGTTAC 59.422 40.000 12.39 8.81 42.32 2.50
2144 3178 5.781210 TCTTGCATTGGAAACATGTTACA 57.219 34.783 12.39 11.43 42.32 2.41
2161 3201 5.129634 TGTTACAGAACCTTGAATTGCTGA 58.870 37.500 0.00 0.00 34.38 4.26
2389 3429 4.858692 CGCAACTTAAAACATTGGATCTGG 59.141 41.667 0.00 0.00 0.00 3.86
2452 3492 9.847224 TTGGAAATCTTTCTAGAAGTTTAGTGT 57.153 29.630 5.12 0.00 37.35 3.55
2494 3534 3.057876 TCAAATTGTCGGCACAATACCAC 60.058 43.478 13.21 0.00 46.35 4.16
2502 3542 2.352651 CGGCACAATACCACTTGAGATG 59.647 50.000 0.00 0.00 0.00 2.90
2554 3595 0.387565 GGCCAAAACTTGCTTTCCGA 59.612 50.000 0.00 0.00 0.00 4.55
2766 3807 8.537016 TGCTAGAAGTATCTTTTAACAGCCTTA 58.463 33.333 0.00 0.00 37.10 2.69
2804 3845 2.288666 GAACTCTTCAGTGGCACAACA 58.711 47.619 21.41 0.00 44.16 3.33
2900 3941 5.127356 ACTTCTCCGACTCGATATTTCCTTT 59.873 40.000 0.00 0.00 0.00 3.11
2989 4030 7.994425 TGAGAAGTAACATGCTTAATGGAAA 57.006 32.000 0.00 0.00 40.94 3.13
3007 4048 5.739959 TGGAAACATACCTCGATCATTCAA 58.260 37.500 0.00 0.00 33.40 2.69
3028 4069 0.108615 AACCTGAAGTCCATCGAGCG 60.109 55.000 0.00 0.00 0.00 5.03
3096 4137 7.933033 AGTTCTTTGCAAACATGGATTATTTGT 59.067 29.630 8.05 0.00 36.04 2.83
3225 4269 2.162681 GTGCAGCAACCACCTTATTCT 58.837 47.619 0.00 0.00 0.00 2.40
3439 4487 7.174599 CCCTTTCCATTAATTTTGCAATCAACA 59.825 33.333 0.00 0.00 30.75 3.33
3494 4546 7.791029 ACAACAACCCAAAATAAGACTGAAAT 58.209 30.769 0.00 0.00 0.00 2.17
3521 4573 1.875813 CGAGCTGGAGCATCGACAC 60.876 63.158 12.34 0.00 45.16 3.67
3549 4601 1.633945 ACCGCAAGAGGACCCTAAAAT 59.366 47.619 0.00 0.00 43.02 1.82
3581 4633 0.321298 ATGGGACGAAAACCTGACGG 60.321 55.000 0.00 0.00 0.00 4.79
3683 4809 6.599445 AGAGATAATCCTCCAAAATCACAGG 58.401 40.000 0.00 0.00 33.76 4.00
3852 4979 1.807573 CGCCTGAAGCTTCGACCTC 60.808 63.158 21.11 7.75 40.39 3.85
3945 8178 8.345565 GGAGAACGAGCATTATAATTGTCAAAT 58.654 33.333 0.00 0.00 0.00 2.32
3986 8219 1.203050 CCAGATCCCCCAACACAAAGT 60.203 52.381 0.00 0.00 0.00 2.66
4048 8780 7.231115 GGAAAAATTTATATAACCTACCCGCCA 59.769 37.037 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.704103 TCCTCCGCTGCTCCAGGT 62.704 66.667 0.00 0.00 31.21 4.00
109 113 3.584848 AGAGGCAAGGATGTCAAAGTAGT 59.415 43.478 0.00 0.00 31.99 2.73
121 125 2.260822 ACAAGCTAGAAGAGGCAAGGA 58.739 47.619 0.00 0.00 0.00 3.36
156 160 3.054728 TGTTTGGTTGAGACTTGAGACCA 60.055 43.478 0.00 0.00 38.54 4.02
157 161 3.541632 TGTTTGGTTGAGACTTGAGACC 58.458 45.455 0.00 0.00 0.00 3.85
161 165 4.036734 GCTGAATGTTTGGTTGAGACTTGA 59.963 41.667 0.00 0.00 0.00 3.02
162 166 4.202040 TGCTGAATGTTTGGTTGAGACTTG 60.202 41.667 0.00 0.00 0.00 3.16
163 167 3.953612 TGCTGAATGTTTGGTTGAGACTT 59.046 39.130 0.00 0.00 0.00 3.01
164 168 3.316308 GTGCTGAATGTTTGGTTGAGACT 59.684 43.478 0.00 0.00 0.00 3.24
186 198 0.035458 AGACGGGAAGAGCAAACAGG 59.965 55.000 0.00 0.00 0.00 4.00
267 284 3.803778 CCTTGGTTTTGACAAGAACATGC 59.196 43.478 6.74 0.00 46.27 4.06
332 350 2.464459 CGCGGGAATGACAGAAGGC 61.464 63.158 0.00 0.00 0.00 4.35
406 444 1.795170 ATGGGCAGCGACAACAACAC 61.795 55.000 0.00 0.00 0.00 3.32
422 460 3.182173 GCATTGAAACAAACACGTGATGG 59.818 43.478 25.01 11.21 0.00 3.51
439 483 0.901580 AGAACAAGGGCAGGGCATTG 60.902 55.000 16.98 16.98 34.47 2.82
566 613 2.683768 AGACAGAGGTCCACAGAAGTT 58.316 47.619 0.00 0.00 45.48 2.66
575 622 6.757478 GCTTTTAGTTATGTAGACAGAGGTCC 59.243 42.308 0.00 0.00 45.48 4.46
588 1033 7.813852 ACTCTACTGAACGCTTTTAGTTATG 57.186 36.000 5.68 0.36 33.73 1.90
595 1040 5.408604 CCACATAACTCTACTGAACGCTTTT 59.591 40.000 0.00 0.00 0.00 2.27
614 1059 0.035439 CAAGAGTTACCCGGCCACAT 60.035 55.000 2.24 0.00 0.00 3.21
626 1071 3.829601 AGATCGGTCAAGACTCAAGAGTT 59.170 43.478 3.96 0.00 42.66 3.01
632 1077 1.203287 CTGCAGATCGGTCAAGACTCA 59.797 52.381 8.42 0.00 0.00 3.41
633 1078 1.203523 ACTGCAGATCGGTCAAGACTC 59.796 52.381 23.35 0.00 0.00 3.36
712 1163 4.282449 TCAGCACTTAGTACTTTGCCTACA 59.718 41.667 16.19 1.13 35.47 2.74
713 1164 4.817517 TCAGCACTTAGTACTTTGCCTAC 58.182 43.478 16.19 0.00 35.47 3.18
716 1167 4.003648 ACATCAGCACTTAGTACTTTGCC 58.996 43.478 16.19 3.87 35.47 4.52
743 1195 3.063725 GTGCAGAGACTGATTCATGAAGC 59.936 47.826 16.73 16.73 32.44 3.86
751 1203 0.322975 AAGGCGTGCAGAGACTGATT 59.677 50.000 0.00 0.00 32.44 2.57
753 1205 0.106708 AAAAGGCGTGCAGAGACTGA 59.893 50.000 0.00 0.00 32.44 3.41
870 1330 2.121291 TGACTTGGTGTTGACTTGCA 57.879 45.000 0.00 0.00 0.00 4.08
903 1363 3.129813 AGTTGACCGGGTGTTTTCTTTTC 59.870 43.478 3.30 0.00 0.00 2.29
931 1392 2.935676 GCCCTAAGTAGACTTGCACACC 60.936 54.545 5.15 0.00 37.40 4.16
936 1397 1.203994 TGTCGCCCTAAGTAGACTTGC 59.796 52.381 5.15 0.00 37.40 4.01
952 1413 6.899771 CGATTTTCCTTGTGTTATATGTGTCG 59.100 38.462 0.00 0.00 0.00 4.35
1013 1480 2.164624 GGAGAAAGAGAGCGCAGAGTTA 59.835 50.000 11.47 0.00 0.00 2.24
1035 1502 0.179062 AGAGAACGAGGATGCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
1079 1546 2.279851 CTGCGACGGTGTTGGACA 60.280 61.111 0.00 0.00 0.00 4.02
1096 1563 1.017387 GACCCGTTGCTGATGGATTC 58.983 55.000 1.04 0.00 36.44 2.52
1690 2724 1.143969 GCGCCTTGCATTGAAGATGC 61.144 55.000 0.00 4.14 45.45 3.91
1691 2725 2.953669 GCGCCTTGCATTGAAGATG 58.046 52.632 0.00 0.00 45.45 2.90
1702 2736 2.410469 GCCTATGCAAGCGCCTTG 59.590 61.111 2.29 9.55 43.57 3.61
1703 2737 3.204827 CGCCTATGCAAGCGCCTT 61.205 61.111 14.82 0.00 46.50 4.35
1708 2742 0.239347 CCATTAGCGCCTATGCAAGC 59.761 55.000 2.29 0.00 37.32 4.01
1709 2743 1.882912 TCCATTAGCGCCTATGCAAG 58.117 50.000 2.29 0.00 37.32 4.01
1710 2744 2.566833 ATCCATTAGCGCCTATGCAA 57.433 45.000 2.29 0.00 37.32 4.08
1711 2745 3.694043 TTATCCATTAGCGCCTATGCA 57.306 42.857 2.29 0.00 37.32 3.96
1712 2746 5.371115 TTTTTATCCATTAGCGCCTATGC 57.629 39.130 2.29 0.00 0.00 3.14
1713 2747 9.906660 TTAAATTTTTATCCATTAGCGCCTATG 57.093 29.630 2.29 8.17 0.00 2.23
1741 2775 9.777297 ACTAACCAGTCTTTTTATTTTACGGTA 57.223 29.630 0.00 0.00 0.00 4.02
1742 2776 8.562052 CACTAACCAGTCTTTTTATTTTACGGT 58.438 33.333 0.00 0.00 30.46 4.83
1743 2777 8.562052 ACACTAACCAGTCTTTTTATTTTACGG 58.438 33.333 0.00 0.00 30.46 4.02
1744 2778 9.940166 AACACTAACCAGTCTTTTTATTTTACG 57.060 29.630 0.00 0.00 30.46 3.18
1750 2784 8.557029 CGAGAAAACACTAACCAGTCTTTTTAT 58.443 33.333 0.00 0.00 34.30 1.40
1751 2785 7.466320 GCGAGAAAACACTAACCAGTCTTTTTA 60.466 37.037 0.00 0.00 34.30 1.52
1752 2786 6.677187 GCGAGAAAACACTAACCAGTCTTTTT 60.677 38.462 0.00 0.00 34.30 1.94
1753 2787 5.220796 GCGAGAAAACACTAACCAGTCTTTT 60.221 40.000 0.00 0.00 36.10 2.27
1754 2788 4.272748 GCGAGAAAACACTAACCAGTCTTT 59.727 41.667 0.00 0.00 30.46 2.52
1755 2789 3.808174 GCGAGAAAACACTAACCAGTCTT 59.192 43.478 0.00 0.00 30.46 3.01
1756 2790 3.391049 GCGAGAAAACACTAACCAGTCT 58.609 45.455 0.00 0.00 30.46 3.24
1757 2791 2.479275 GGCGAGAAAACACTAACCAGTC 59.521 50.000 0.00 0.00 30.46 3.51
1758 2792 2.490991 GGCGAGAAAACACTAACCAGT 58.509 47.619 0.00 0.00 34.42 4.00
1759 2793 1.804748 GGGCGAGAAAACACTAACCAG 59.195 52.381 0.00 0.00 0.00 4.00
1760 2794 1.141254 TGGGCGAGAAAACACTAACCA 59.859 47.619 0.00 0.00 0.00 3.67
1761 2795 1.886886 TGGGCGAGAAAACACTAACC 58.113 50.000 0.00 0.00 0.00 2.85
1762 2796 2.349155 CGTTGGGCGAGAAAACACTAAC 60.349 50.000 0.00 0.00 44.77 2.34
1763 2797 1.868498 CGTTGGGCGAGAAAACACTAA 59.132 47.619 0.00 0.00 44.77 2.24
1764 2798 1.504359 CGTTGGGCGAGAAAACACTA 58.496 50.000 0.00 0.00 44.77 2.74
1765 2799 1.782028 GCGTTGGGCGAGAAAACACT 61.782 55.000 0.00 0.00 44.77 3.55
1766 2800 1.370051 GCGTTGGGCGAGAAAACAC 60.370 57.895 0.00 0.00 44.77 3.32
1767 2801 3.027292 GCGTTGGGCGAGAAAACA 58.973 55.556 0.00 0.00 44.77 2.83
1778 2812 0.107703 TCATTAGAGCCCAGCGTTGG 60.108 55.000 11.98 11.98 44.60 3.77
1779 2813 1.009829 GTCATTAGAGCCCAGCGTTG 58.990 55.000 0.00 0.00 0.00 4.10
1780 2814 0.613260 TGTCATTAGAGCCCAGCGTT 59.387 50.000 0.00 0.00 0.00 4.84
1781 2815 0.176680 CTGTCATTAGAGCCCAGCGT 59.823 55.000 0.00 0.00 0.00 5.07
1782 2816 0.531532 CCTGTCATTAGAGCCCAGCG 60.532 60.000 0.00 0.00 0.00 5.18
1783 2817 0.817229 GCCTGTCATTAGAGCCCAGC 60.817 60.000 0.00 0.00 0.00 4.85
1784 2818 0.531532 CGCCTGTCATTAGAGCCCAG 60.532 60.000 0.00 0.00 0.00 4.45
1785 2819 1.522092 CGCCTGTCATTAGAGCCCA 59.478 57.895 0.00 0.00 0.00 5.36
1786 2820 1.889573 GCGCCTGTCATTAGAGCCC 60.890 63.158 0.00 0.00 0.00 5.19
1787 2821 0.389391 TAGCGCCTGTCATTAGAGCC 59.611 55.000 2.29 0.00 0.00 4.70
1788 2822 2.225068 TTAGCGCCTGTCATTAGAGC 57.775 50.000 2.29 0.00 0.00 4.09
1789 2823 3.982475 TGATTAGCGCCTGTCATTAGAG 58.018 45.455 2.29 0.00 0.00 2.43
1790 2824 4.400529 TTGATTAGCGCCTGTCATTAGA 57.599 40.909 2.29 0.00 0.00 2.10
1791 2825 4.143242 CGATTGATTAGCGCCTGTCATTAG 60.143 45.833 2.29 0.00 0.00 1.73
1792 2826 3.740832 CGATTGATTAGCGCCTGTCATTA 59.259 43.478 2.29 0.00 0.00 1.90
1793 2827 2.545526 CGATTGATTAGCGCCTGTCATT 59.454 45.455 2.29 2.10 0.00 2.57
1794 2828 2.138320 CGATTGATTAGCGCCTGTCAT 58.862 47.619 2.29 0.00 0.00 3.06
1795 2829 1.570813 CGATTGATTAGCGCCTGTCA 58.429 50.000 2.29 2.43 0.00 3.58
1796 2830 0.233332 GCGATTGATTAGCGCCTGTC 59.767 55.000 2.29 0.00 44.55 3.51
1797 2831 2.311294 GCGATTGATTAGCGCCTGT 58.689 52.632 2.29 0.00 44.55 4.00
1802 2836 5.609696 CGGTTAGTTTAGCGATTGATTAGCG 60.610 44.000 0.00 0.00 41.23 4.26
1803 2837 5.233689 ACGGTTAGTTTAGCGATTGATTAGC 59.766 40.000 2.04 0.00 41.23 3.09
1804 2838 6.823678 ACGGTTAGTTTAGCGATTGATTAG 57.176 37.500 2.04 0.00 41.23 1.73
1805 2839 8.190122 TCTTACGGTTAGTTTAGCGATTGATTA 58.810 33.333 2.04 0.00 41.23 1.75
1806 2840 7.009907 GTCTTACGGTTAGTTTAGCGATTGATT 59.990 37.037 2.04 0.00 41.23 2.57
1807 2841 6.474751 GTCTTACGGTTAGTTTAGCGATTGAT 59.525 38.462 2.04 0.00 41.23 2.57
1808 2842 5.801947 GTCTTACGGTTAGTTTAGCGATTGA 59.198 40.000 2.04 0.00 41.23 2.57
1809 2843 5.574055 TGTCTTACGGTTAGTTTAGCGATTG 59.426 40.000 2.04 0.00 41.23 2.67
1810 2844 5.713025 TGTCTTACGGTTAGTTTAGCGATT 58.287 37.500 2.04 0.00 41.23 3.34
1811 2845 5.124457 TCTGTCTTACGGTTAGTTTAGCGAT 59.876 40.000 2.04 0.00 41.23 4.58
1812 2846 4.455533 TCTGTCTTACGGTTAGTTTAGCGA 59.544 41.667 2.04 0.00 41.23 4.93
1813 2847 4.726416 TCTGTCTTACGGTTAGTTTAGCG 58.274 43.478 0.00 0.00 44.05 4.26
1814 2848 5.454877 CGATCTGTCTTACGGTTAGTTTAGC 59.545 44.000 0.00 0.00 0.00 3.09
1815 2849 5.454877 GCGATCTGTCTTACGGTTAGTTTAG 59.545 44.000 0.00 0.00 0.00 1.85
1816 2850 5.124457 AGCGATCTGTCTTACGGTTAGTTTA 59.876 40.000 0.00 0.00 32.83 2.01
1817 2851 4.082354 AGCGATCTGTCTTACGGTTAGTTT 60.082 41.667 0.00 0.00 32.83 2.66
1818 2852 3.442977 AGCGATCTGTCTTACGGTTAGTT 59.557 43.478 0.00 0.00 32.83 2.24
1819 2853 3.015327 AGCGATCTGTCTTACGGTTAGT 58.985 45.455 0.00 0.00 32.83 2.24
1820 2854 3.694535 AGCGATCTGTCTTACGGTTAG 57.305 47.619 0.00 0.00 32.83 2.34
1821 2855 3.003068 GCTAGCGATCTGTCTTACGGTTA 59.997 47.826 0.00 0.00 37.61 2.85
1822 2856 2.223525 GCTAGCGATCTGTCTTACGGTT 60.224 50.000 0.00 0.00 37.61 4.44
1823 2857 1.334243 GCTAGCGATCTGTCTTACGGT 59.666 52.381 0.00 0.00 39.60 4.83
1824 2858 1.333931 TGCTAGCGATCTGTCTTACGG 59.666 52.381 10.77 0.00 0.00 4.02
1825 2859 2.223272 TGTGCTAGCGATCTGTCTTACG 60.223 50.000 10.77 0.00 0.00 3.18
1826 2860 3.422417 TGTGCTAGCGATCTGTCTTAC 57.578 47.619 10.77 0.00 0.00 2.34
1827 2861 3.304057 CGATGTGCTAGCGATCTGTCTTA 60.304 47.826 19.13 0.00 41.60 2.10
1828 2862 2.542618 CGATGTGCTAGCGATCTGTCTT 60.543 50.000 19.13 1.50 41.60 3.01
1829 2863 1.001924 CGATGTGCTAGCGATCTGTCT 60.002 52.381 19.13 0.00 41.60 3.41
1830 2864 1.403493 CGATGTGCTAGCGATCTGTC 58.597 55.000 19.13 8.08 41.60 3.51
1831 2865 0.596083 GCGATGTGCTAGCGATCTGT 60.596 55.000 19.13 0.93 41.60 3.41
1832 2866 2.140066 GCGATGTGCTAGCGATCTG 58.860 57.895 19.13 14.75 41.60 2.90
1833 2867 4.643733 GCGATGTGCTAGCGATCT 57.356 55.556 19.13 2.52 41.60 2.75
1842 2876 2.555199 AGATAGTTTGGAGCGATGTGC 58.445 47.619 0.00 0.00 46.98 4.57
1843 2877 4.183865 TCAAGATAGTTTGGAGCGATGTG 58.816 43.478 0.00 0.00 0.00 3.21
1844 2878 4.160439 TCTCAAGATAGTTTGGAGCGATGT 59.840 41.667 0.00 0.00 0.00 3.06
1845 2879 4.686972 TCTCAAGATAGTTTGGAGCGATG 58.313 43.478 0.00 0.00 0.00 3.84
1846 2880 5.344743 TTCTCAAGATAGTTTGGAGCGAT 57.655 39.130 0.00 0.00 0.00 4.58
1847 2881 4.801330 TTCTCAAGATAGTTTGGAGCGA 57.199 40.909 0.00 0.00 0.00 4.93
1848 2882 5.862924 TTTTCTCAAGATAGTTTGGAGCG 57.137 39.130 0.00 0.00 0.00 5.03
1870 2904 1.583495 GGCGGACGCTTAGCCTTTTT 61.583 55.000 16.72 0.00 46.83 1.94
1871 2905 2.038837 GGCGGACGCTTAGCCTTTT 61.039 57.895 16.72 0.00 46.83 2.27
1872 2906 2.436115 GGCGGACGCTTAGCCTTT 60.436 61.111 16.72 0.00 46.83 3.11
1876 2910 4.143333 TGGAGGCGGACGCTTAGC 62.143 66.667 16.72 0.00 41.60 3.09
1877 2911 2.105128 CTGGAGGCGGACGCTTAG 59.895 66.667 16.72 0.39 41.60 2.18
1878 2912 4.143333 GCTGGAGGCGGACGCTTA 62.143 66.667 16.72 0.00 41.60 3.09
1887 2921 3.426568 GACGCAACAGCTGGAGGC 61.427 66.667 19.93 16.63 42.19 4.70
1888 2922 3.114616 CGACGCAACAGCTGGAGG 61.115 66.667 19.93 7.92 0.00 4.30
1889 2923 2.049156 TCGACGCAACAGCTGGAG 60.049 61.111 19.93 11.03 0.00 3.86
1890 2924 2.355837 GTCGACGCAACAGCTGGA 60.356 61.111 19.93 0.00 0.00 3.86
1891 2925 2.661537 TGTCGACGCAACAGCTGG 60.662 61.111 19.93 1.57 0.00 4.85
1892 2926 2.546321 GTGTCGACGCAACAGCTG 59.454 61.111 23.67 13.48 0.00 4.24
1893 2927 2.661866 GGTGTCGACGCAACAGCT 60.662 61.111 28.67 0.00 40.92 4.24
1894 2928 4.059459 CGGTGTCGACGCAACAGC 62.059 66.667 28.67 11.92 40.76 4.40
1895 2929 2.354188 TCGGTGTCGACGCAACAG 60.354 61.111 28.67 16.76 40.88 3.16
1896 2930 1.784036 TACTCGGTGTCGACGCAACA 61.784 55.000 28.67 11.83 40.88 3.33
1897 2931 1.063951 CTACTCGGTGTCGACGCAAC 61.064 60.000 28.67 13.27 40.88 4.17
1898 2932 1.208358 CTACTCGGTGTCGACGCAA 59.792 57.895 28.67 15.90 40.88 4.85
1899 2933 2.683859 CCTACTCGGTGTCGACGCA 61.684 63.158 28.67 10.04 40.88 5.24
1900 2934 2.099831 CCTACTCGGTGTCGACGC 59.900 66.667 20.76 20.76 40.88 5.19
1901 2935 1.423056 GTCCTACTCGGTGTCGACG 59.577 63.158 11.62 0.00 40.88 5.12
1902 2936 1.423056 CGTCCTACTCGGTGTCGAC 59.577 63.158 9.11 9.11 40.88 4.20
1903 2937 2.393768 GCGTCCTACTCGGTGTCGA 61.394 63.158 0.00 0.00 43.86 4.20
1904 2938 2.099831 GCGTCCTACTCGGTGTCG 59.900 66.667 0.00 0.00 37.82 4.35
1905 2939 2.267681 CTGGCGTCCTACTCGGTGTC 62.268 65.000 0.00 0.00 0.00 3.67
1906 2940 2.282674 TGGCGTCCTACTCGGTGT 60.283 61.111 0.00 0.00 0.00 4.16
1907 2941 2.490217 CTGGCGTCCTACTCGGTG 59.510 66.667 0.00 0.00 0.00 4.94
1908 2942 2.569218 ATCCTGGCGTCCTACTCGGT 62.569 60.000 0.00 0.00 0.00 4.69
1909 2943 1.392710 AATCCTGGCGTCCTACTCGG 61.393 60.000 0.00 0.00 0.00 4.63
1910 2944 0.460311 AAATCCTGGCGTCCTACTCG 59.540 55.000 0.00 0.00 0.00 4.18
1911 2945 1.207329 ACAAATCCTGGCGTCCTACTC 59.793 52.381 0.00 0.00 0.00 2.59
1912 2946 1.276622 ACAAATCCTGGCGTCCTACT 58.723 50.000 0.00 0.00 0.00 2.57
1913 2947 2.007608 GAACAAATCCTGGCGTCCTAC 58.992 52.381 0.00 0.00 0.00 3.18
1914 2948 1.626321 TGAACAAATCCTGGCGTCCTA 59.374 47.619 0.00 0.00 0.00 2.94
1915 2949 0.400213 TGAACAAATCCTGGCGTCCT 59.600 50.000 0.00 0.00 0.00 3.85
1916 2950 0.521735 GTGAACAAATCCTGGCGTCC 59.478 55.000 0.00 0.00 0.00 4.79
1917 2951 0.165944 CGTGAACAAATCCTGGCGTC 59.834 55.000 0.00 0.00 0.00 5.19
1918 2952 0.534203 ACGTGAACAAATCCTGGCGT 60.534 50.000 0.00 0.00 0.00 5.68
1919 2953 1.434555 TACGTGAACAAATCCTGGCG 58.565 50.000 0.00 0.00 0.00 5.69
1920 2954 2.812011 AGTTACGTGAACAAATCCTGGC 59.188 45.455 0.00 0.00 40.86 4.85
1921 2955 3.364964 GCAGTTACGTGAACAAATCCTGG 60.365 47.826 0.00 0.00 40.86 4.45
1922 2956 3.364964 GGCAGTTACGTGAACAAATCCTG 60.365 47.826 0.00 0.00 40.86 3.86
1923 2957 2.812011 GGCAGTTACGTGAACAAATCCT 59.188 45.455 0.00 0.00 40.86 3.24
1924 2958 2.412325 CGGCAGTTACGTGAACAAATCC 60.412 50.000 0.00 0.00 40.86 3.01
1925 2959 2.477375 TCGGCAGTTACGTGAACAAATC 59.523 45.455 0.00 0.00 40.86 2.17
1926 2960 2.485903 TCGGCAGTTACGTGAACAAAT 58.514 42.857 0.00 0.00 40.86 2.32
1927 2961 1.937278 TCGGCAGTTACGTGAACAAA 58.063 45.000 0.00 0.00 40.86 2.83
1928 2962 2.157834 ATCGGCAGTTACGTGAACAA 57.842 45.000 0.00 0.00 40.86 2.83
1929 2963 2.598589 GTATCGGCAGTTACGTGAACA 58.401 47.619 0.00 0.00 40.86 3.18
1930 2964 1.580704 CGTATCGGCAGTTACGTGAAC 59.419 52.381 16.25 0.00 39.72 3.18
1931 2965 1.467883 CCGTATCGGCAGTTACGTGAA 60.468 52.381 20.74 0.00 41.75 3.18
1932 2966 0.099259 CCGTATCGGCAGTTACGTGA 59.901 55.000 20.74 0.00 41.75 4.35
1933 2967 2.573802 CCGTATCGGCAGTTACGTG 58.426 57.895 20.74 11.78 41.75 4.49
1943 2977 5.810021 GGATTCGTATCCTGCCGTATCGG 62.810 56.522 13.42 3.67 46.94 4.18
1944 2978 2.516923 GATTCGTATCCTGCCGTATCG 58.483 52.381 0.00 0.00 0.00 2.92
1945 2979 2.877335 GGATTCGTATCCTGCCGTATC 58.123 52.381 13.42 0.00 45.88 2.24
1955 2989 0.456312 CCGGCGCTAGGATTCGTATC 60.456 60.000 15.65 0.00 0.00 2.24
1956 2990 1.585006 CCGGCGCTAGGATTCGTAT 59.415 57.895 15.65 0.00 0.00 3.06
1957 2991 3.036577 CCGGCGCTAGGATTCGTA 58.963 61.111 15.65 0.00 0.00 3.43
1958 2992 4.587189 GCCGGCGCTAGGATTCGT 62.587 66.667 22.97 0.00 0.00 3.85
1959 2993 4.286320 AGCCGGCGCTAGGATTCG 62.286 66.667 23.20 9.55 46.08 3.34
1986 3020 2.169937 TAAGGGCACGTACAACGGGG 62.170 60.000 3.65 0.00 46.78 5.73
1990 3024 2.606272 GCATACTAAGGGCACGTACAAC 59.394 50.000 0.00 0.00 0.00 3.32
1991 3025 2.498481 AGCATACTAAGGGCACGTACAA 59.502 45.455 0.00 0.00 0.00 2.41
1992 3026 2.100252 GAGCATACTAAGGGCACGTACA 59.900 50.000 0.00 0.00 0.00 2.90
1993 3027 2.100252 TGAGCATACTAAGGGCACGTAC 59.900 50.000 0.00 0.00 0.00 3.67
1994 3028 2.361119 CTGAGCATACTAAGGGCACGTA 59.639 50.000 0.00 0.00 0.00 3.57
1995 3029 1.137086 CTGAGCATACTAAGGGCACGT 59.863 52.381 0.00 0.00 0.00 4.49
1996 3030 1.137086 ACTGAGCATACTAAGGGCACG 59.863 52.381 0.00 0.00 0.00 5.34
1997 3031 2.990066 ACTGAGCATACTAAGGGCAC 57.010 50.000 0.00 0.00 0.00 5.01
1998 3032 5.045869 ACTTAAACTGAGCATACTAAGGGCA 60.046 40.000 0.00 0.00 0.00 5.36
1999 3033 5.429130 ACTTAAACTGAGCATACTAAGGGC 58.571 41.667 0.00 0.00 0.00 5.19
2000 3034 8.038944 TGTTACTTAAACTGAGCATACTAAGGG 58.961 37.037 0.00 0.00 38.99 3.95
2001 3035 8.997621 TGTTACTTAAACTGAGCATACTAAGG 57.002 34.615 0.00 0.00 38.99 2.69
2003 3037 9.991906 AGTTGTTACTTAAACTGAGCATACTAA 57.008 29.630 0.00 0.00 38.99 2.24
2005 3039 9.420551 GTAGTTGTTACTTAAACTGAGCATACT 57.579 33.333 0.00 0.00 38.99 2.12
2006 3040 8.654215 GGTAGTTGTTACTTAAACTGAGCATAC 58.346 37.037 0.00 0.00 38.99 2.39
2007 3041 8.591072 AGGTAGTTGTTACTTAAACTGAGCATA 58.409 33.333 0.00 0.00 38.99 3.14
2034 3068 2.660064 GGTGGAGACGTGCCCTGAT 61.660 63.158 0.00 0.00 0.00 2.90
2068 3102 4.759782 AGTCCAAGATAAATGAGTGACGG 58.240 43.478 0.00 0.00 0.00 4.79
2097 3131 5.481473 TGGTACTCGTCCAGTAAGGTTATTT 59.519 40.000 0.00 0.00 39.44 1.40
2138 3172 5.008613 GTCAGCAATTCAAGGTTCTGTAACA 59.991 40.000 0.00 0.00 37.34 2.41
2139 3173 5.452777 GTCAGCAATTCAAGGTTCTGTAAC 58.547 41.667 0.00 0.00 34.66 2.50
2140 3174 4.518970 GGTCAGCAATTCAAGGTTCTGTAA 59.481 41.667 0.00 0.00 0.00 2.41
2141 3175 4.072131 GGTCAGCAATTCAAGGTTCTGTA 58.928 43.478 0.00 0.00 0.00 2.74
2142 3176 2.887152 GGTCAGCAATTCAAGGTTCTGT 59.113 45.455 0.00 0.00 0.00 3.41
2143 3177 2.886523 TGGTCAGCAATTCAAGGTTCTG 59.113 45.455 0.00 0.00 0.00 3.02
2144 3178 3.228188 TGGTCAGCAATTCAAGGTTCT 57.772 42.857 0.00 0.00 0.00 3.01
2161 3201 4.145807 TCAAATTTGTTACCCGACATGGT 58.854 39.130 17.47 0.00 42.62 3.55
2204 3244 0.179215 GAGGTTCGACGCATTTGCTG 60.179 55.000 0.51 0.00 39.32 4.41
2389 3429 2.669781 TCCATTCAGGGCATTTCCATC 58.330 47.619 0.00 0.00 38.24 3.51
2494 3534 5.390991 GGCTTCGAAGGTTAAACATCTCAAG 60.391 44.000 25.77 0.00 0.00 3.02
2502 3542 2.774687 TGGAGGCTTCGAAGGTTAAAC 58.225 47.619 25.77 8.36 0.00 2.01
2766 3807 5.061721 AGTTCACTTGGTATTGGTCCTTT 57.938 39.130 0.00 0.00 0.00 3.11
2804 3845 6.507023 GTTTGACAAATCCAAACTGATCAGT 58.493 36.000 22.89 22.89 45.80 3.41
2900 3941 5.888724 TGGAACTTGACCAGACAATTTGTTA 59.111 36.000 3.08 0.00 33.22 2.41
2989 4030 6.931281 CAGGTTATTGAATGATCGAGGTATGT 59.069 38.462 0.00 0.00 0.00 2.29
3007 4048 2.223829 CGCTCGATGGACTTCAGGTTAT 60.224 50.000 0.00 0.00 0.00 1.89
3028 4069 4.203226 GGAGTTCTGGGAAAGATCAATCC 58.797 47.826 8.00 8.00 33.93 3.01
3096 4137 7.175347 AGTTCATAGACAGATCAAGTTGCTA 57.825 36.000 0.00 0.00 0.00 3.49
3212 4253 6.449830 AGTGGAAACTAGAATAAGGTGGTT 57.550 37.500 0.00 0.00 0.00 3.67
3225 4269 2.524306 CATGGGGCAAAGTGGAAACTA 58.476 47.619 0.00 0.00 0.00 2.24
3439 4487 8.793592 GGAAAATTACTGGAACACTGTATTTCT 58.206 33.333 0.00 0.00 35.30 2.52
3494 4546 4.382541 TCCAGCTCGCTCCTCCCA 62.383 66.667 0.00 0.00 0.00 4.37
3521 4573 2.325082 CCTCTTGCGGTGGGTTTCG 61.325 63.158 0.00 0.00 0.00 3.46
3549 4601 2.275089 CCCATGGCGGTTGATCCA 59.725 61.111 6.09 0.00 36.70 3.41
3581 4633 0.175989 GGGTAGTGGCTAGTCAGTGC 59.824 60.000 15.09 13.20 0.00 4.40
3683 4809 2.579684 GATGCCCGTCCTGGAGTGAC 62.580 65.000 0.00 0.00 42.00 3.67
3852 4979 3.995705 CAGGACTGCTGAAAGAAGAAGAG 59.004 47.826 0.00 0.00 45.09 2.85
3945 8178 5.361427 TGGTGTCTTCGAAATAAAGTCACA 58.639 37.500 11.63 0.00 41.50 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.