Multiple sequence alignment - TraesCS2A01G067400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G067400 chr2A 100.000 3719 0 0 1 3719 30129889 30133607 0.000000e+00 6868
1 TraesCS2A01G067400 chr2D 85.949 3039 190 116 782 3719 27905893 27908795 0.000000e+00 3027
2 TraesCS2A01G067400 chr2B 84.154 1666 123 77 930 2503 44402805 44404421 0.000000e+00 1483
3 TraesCS2A01G067400 chr2B 84.903 722 73 24 89 797 44401999 44402697 0.000000e+00 697
4 TraesCS2A01G067400 chr2B 85.152 559 58 18 2928 3476 44404860 44405403 1.950000e-152 549
5 TraesCS2A01G067400 chr2B 84.865 185 26 2 3535 3719 44405739 44405921 6.340000e-43 185
6 TraesCS2A01G067400 chr2B 96.875 96 3 0 1 96 44401748 44401843 1.070000e-35 161
7 TraesCS2A01G067400 chr7B 82.530 332 45 9 3152 3477 358106906 358106582 2.830000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G067400 chr2A 30129889 30133607 3718 False 6868 6868 100.0000 1 3719 1 chr2A.!!$F1 3718
1 TraesCS2A01G067400 chr2D 27905893 27908795 2902 False 3027 3027 85.9490 782 3719 1 chr2D.!!$F1 2937
2 TraesCS2A01G067400 chr2B 44401748 44405921 4173 False 615 1483 87.1898 1 3719 5 chr2B.!!$F1 3718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 669 0.028242 TCGTGTTTCGCGTTTTGCAT 59.972 45.0 5.77 0.0 46.97 3.96 F
603 777 0.099259 TAGCGTCGTGTACCATTCGG 59.901 55.0 0.00 0.0 38.77 4.30 F
2152 2426 0.107703 CGAGGCCAGCATGTTCCTTA 60.108 55.0 5.01 0.0 37.31 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2171 0.032403 CTGCACCACACAACCATTGG 59.968 55.0 0.0 0.0 36.39 3.16 R
2189 2467 0.036732 GAACCTGCCACACCATCAGA 59.963 55.0 0.0 0.0 0.00 3.27 R
3108 3541 0.187117 TTGTGTTCCTCCATTGCCCA 59.813 50.0 0.0 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 274 1.592669 CGTAGGAGCTTCGGCCATG 60.593 63.158 2.24 0.00 43.01 3.66
174 338 9.853555 TGACATATTTTGACATCCAAATACAAC 57.146 29.630 1.43 0.00 43.59 3.32
180 344 9.912634 ATTTTGACATCCAAATACAACTTACTG 57.087 29.630 0.00 0.00 43.59 2.74
182 346 6.000840 TGACATCCAAATACAACTTACTGCA 58.999 36.000 0.00 0.00 0.00 4.41
184 348 6.913170 ACATCCAAATACAACTTACTGCAAG 58.087 36.000 0.00 0.00 40.38 4.01
250 414 2.310647 TCCCTTTTTAGCCGGATTTCCT 59.689 45.455 5.05 0.00 0.00 3.36
273 437 4.541250 ATCTTTCAAATGGGGCTATCCA 57.459 40.909 0.00 0.00 41.60 3.41
276 440 4.895297 TCTTTCAAATGGGGCTATCCAATC 59.105 41.667 0.00 0.00 40.62 2.67
285 449 6.024563 TGGGGCTATCCAATCTATTTCAAA 57.975 37.500 0.00 0.00 37.22 2.69
286 450 5.833131 TGGGGCTATCCAATCTATTTCAAAC 59.167 40.000 0.00 0.00 37.22 2.93
287 451 5.048713 GGGGCTATCCAATCTATTTCAAACG 60.049 44.000 0.00 0.00 37.22 3.60
288 452 5.531287 GGGCTATCCAATCTATTTCAAACGT 59.469 40.000 0.00 0.00 35.00 3.99
289 453 6.430451 GGCTATCCAATCTATTTCAAACGTG 58.570 40.000 0.00 0.00 0.00 4.49
290 454 6.038271 GGCTATCCAATCTATTTCAAACGTGT 59.962 38.462 0.00 0.00 0.00 4.49
292 456 5.621197 TCCAATCTATTTCAAACGTGTGG 57.379 39.130 5.75 0.00 0.00 4.17
293 457 5.309638 TCCAATCTATTTCAAACGTGTGGA 58.690 37.500 5.75 0.00 0.00 4.02
294 458 5.943416 TCCAATCTATTTCAAACGTGTGGAT 59.057 36.000 5.75 3.47 0.00 3.41
295 459 6.029607 CCAATCTATTTCAAACGTGTGGATG 58.970 40.000 5.75 0.00 0.00 3.51
296 460 4.678509 TCTATTTCAAACGTGTGGATGC 57.321 40.909 5.75 0.00 0.00 3.91
298 462 3.559238 ATTTCAAACGTGTGGATGCTC 57.441 42.857 5.75 0.00 0.00 4.26
299 463 1.960417 TTCAAACGTGTGGATGCTCA 58.040 45.000 5.75 0.00 0.00 4.26
313 478 3.314635 GGATGCTCAACTTGCAATAGGAG 59.685 47.826 0.00 8.23 44.01 3.69
335 500 5.133941 AGGATGCTATCTTTGTCTACGAGA 58.866 41.667 0.00 0.00 0.00 4.04
336 501 5.240623 AGGATGCTATCTTTGTCTACGAGAG 59.759 44.000 0.00 0.00 0.00 3.20
354 519 5.359292 ACGAGAGTTACCTTACCAAGATACC 59.641 44.000 0.00 0.00 46.40 2.73
356 521 6.459848 CGAGAGTTACCTTACCAAGATACCTG 60.460 46.154 0.00 0.00 0.00 4.00
368 533 6.426587 ACCAAGATACCTGTTGCTATTTCAT 58.573 36.000 0.00 0.00 0.00 2.57
407 572 0.517755 CTCTAGTGTCTCGTGCGTGT 59.482 55.000 0.00 0.00 0.00 4.49
409 574 1.053048 CTAGTGTCTCGTGCGTGTTG 58.947 55.000 0.00 0.00 0.00 3.33
434 599 9.952030 TGGAAGTGTATAAACATTGATACTTGA 57.048 29.630 0.00 0.00 38.08 3.02
444 609 4.829808 CATTGATACTTGATCAGTGCGTG 58.170 43.478 0.00 0.00 45.43 5.34
463 628 4.915253 CGTGTATAACGCATCATTACGTC 58.085 43.478 0.00 0.00 46.99 4.34
465 630 5.386019 CGTGTATAACGCATCATTACGTCAG 60.386 44.000 0.00 0.00 46.99 3.51
482 648 6.462073 ACGTCAGAACATGTTTATGTACAC 57.538 37.500 13.36 8.34 46.54 2.90
487 653 6.871492 TCAGAACATGTTTATGTACACATCGT 59.129 34.615 13.36 0.00 46.54 3.73
488 654 6.955407 CAGAACATGTTTATGTACACATCGTG 59.045 38.462 13.36 3.99 46.54 4.35
489 655 6.649141 AGAACATGTTTATGTACACATCGTGT 59.351 34.615 13.36 4.98 46.54 4.49
492 658 7.295201 ACATGTTTATGTACACATCGTGTTTC 58.705 34.615 4.91 0.86 45.45 2.78
503 669 0.028242 TCGTGTTTCGCGTTTTGCAT 59.972 45.000 5.77 0.00 46.97 3.96
514 680 2.415893 GCGTTTTGCATAGACCAGCATT 60.416 45.455 0.00 0.00 45.45 3.56
546 713 7.933033 TGTTGAGCACATATTTCTCTATGCATA 59.067 33.333 6.20 6.20 35.51 3.14
547 714 7.895975 TGAGCACATATTTCTCTATGCATAC 57.104 36.000 1.16 0.00 35.51 2.39
548 715 7.444299 TGAGCACATATTTCTCTATGCATACA 58.556 34.615 1.16 0.00 35.51 2.29
579 753 6.642131 TGTAAGATGTAATTATAACGTCGGGC 59.358 38.462 0.00 0.00 37.83 6.13
582 756 2.061028 GTAATTATAACGTCGGGCGGG 58.939 52.381 7.03 0.00 46.52 6.13
583 757 0.465287 AATTATAACGTCGGGCGGGT 59.535 50.000 7.03 0.00 46.52 5.28
585 759 1.107114 TTATAACGTCGGGCGGGTTA 58.893 50.000 7.03 0.00 46.52 2.85
586 760 0.667993 TATAACGTCGGGCGGGTTAG 59.332 55.000 7.03 0.00 46.52 2.34
587 761 2.633681 ATAACGTCGGGCGGGTTAGC 62.634 60.000 7.03 0.00 46.52 3.09
594 768 4.729856 GGCGGGTTAGCGTCGTGT 62.730 66.667 0.00 0.00 38.18 4.49
595 769 2.179018 GCGGGTTAGCGTCGTGTA 59.821 61.111 0.00 0.00 0.00 2.90
596 770 2.154569 GCGGGTTAGCGTCGTGTAC 61.155 63.158 0.00 0.00 0.00 2.90
597 771 1.514873 CGGGTTAGCGTCGTGTACC 60.515 63.158 0.00 0.00 0.00 3.34
598 772 1.586028 GGGTTAGCGTCGTGTACCA 59.414 57.895 11.87 0.00 0.00 3.25
599 773 0.174162 GGGTTAGCGTCGTGTACCAT 59.826 55.000 11.87 0.00 0.00 3.55
600 774 1.404583 GGGTTAGCGTCGTGTACCATT 60.405 52.381 11.87 0.00 0.00 3.16
601 775 1.922545 GGTTAGCGTCGTGTACCATTC 59.077 52.381 0.00 0.00 0.00 2.67
602 776 1.580704 GTTAGCGTCGTGTACCATTCG 59.419 52.381 0.00 0.00 0.00 3.34
603 777 0.099259 TAGCGTCGTGTACCATTCGG 59.901 55.000 0.00 0.00 38.77 4.30
604 778 2.162754 GCGTCGTGTACCATTCGGG 61.163 63.158 0.00 0.00 44.81 5.14
605 779 1.517694 CGTCGTGTACCATTCGGGG 60.518 63.158 0.00 0.00 42.91 5.73
614 788 2.818751 ACCATTCGGGGCTTTAATCA 57.181 45.000 0.00 0.00 42.91 2.57
615 789 2.375146 ACCATTCGGGGCTTTAATCAC 58.625 47.619 0.00 0.00 42.91 3.06
617 791 2.014128 CATTCGGGGCTTTAATCACGT 58.986 47.619 0.00 0.00 0.00 4.49
629 803 6.248631 GCTTTAATCACGTGGTTCTTACATC 58.751 40.000 19.14 0.00 0.00 3.06
632 806 1.614903 TCACGTGGTTCTTACATCGGT 59.385 47.619 17.00 0.00 0.00 4.69
633 807 2.819019 TCACGTGGTTCTTACATCGGTA 59.181 45.455 17.00 0.00 0.00 4.02
634 808 2.919229 CACGTGGTTCTTACATCGGTAC 59.081 50.000 7.95 0.00 0.00 3.34
650 824 6.098409 ACATCGGTACTACATTCCTCTCAAAT 59.902 38.462 0.00 0.00 0.00 2.32
653 827 5.428253 GGTACTACATTCCTCTCAAATGCA 58.572 41.667 0.00 0.00 37.58 3.96
654 828 5.525378 GGTACTACATTCCTCTCAAATGCAG 59.475 44.000 0.00 0.00 37.58 4.41
656 830 3.083122 ACATTCCTCTCAAATGCAGCT 57.917 42.857 0.00 0.00 37.58 4.24
657 831 3.428532 ACATTCCTCTCAAATGCAGCTT 58.571 40.909 0.00 0.00 37.58 3.74
659 833 2.865119 TCCTCTCAAATGCAGCTTGA 57.135 45.000 12.16 12.16 0.00 3.02
660 834 2.430465 TCCTCTCAAATGCAGCTTGAC 58.570 47.619 9.38 0.00 0.00 3.18
686 860 4.858680 TTTGTGACGCCACGCCCA 62.859 61.111 0.00 0.00 46.06 5.36
727 901 1.600023 AAAAGGCGACGACCATCAAA 58.400 45.000 0.00 0.00 0.00 2.69
743 917 0.802494 CAAATACTGCCCGTTTCGCT 59.198 50.000 0.00 0.00 0.00 4.93
745 919 1.530323 AATACTGCCCGTTTCGCTTT 58.470 45.000 0.00 0.00 0.00 3.51
752 926 0.385098 CCCGTTTCGCTTTTCCGAAC 60.385 55.000 0.00 0.00 45.72 3.95
762 936 2.820197 GCTTTTCCGAACCCAGAGAAAT 59.180 45.455 0.00 0.00 0.00 2.17
763 937 3.366374 GCTTTTCCGAACCCAGAGAAATG 60.366 47.826 0.00 0.00 0.00 2.32
768 942 4.320870 TCCGAACCCAGAGAAATGTAAAC 58.679 43.478 0.00 0.00 0.00 2.01
771 945 4.994852 CGAACCCAGAGAAATGTAAACAGA 59.005 41.667 0.00 0.00 0.00 3.41
779 953 6.019075 CAGAGAAATGTAAACAGAACACGACA 60.019 38.462 0.00 0.00 0.00 4.35
780 954 6.018994 AGAGAAATGTAAACAGAACACGACAC 60.019 38.462 0.00 0.00 0.00 3.67
789 963 0.857287 GAACACGACACCGAAACTCC 59.143 55.000 0.00 0.00 39.50 3.85
791 965 1.299620 CACGACACCGAAACTCCGT 60.300 57.895 0.00 0.00 39.50 4.69
868 1042 3.781079 TGAAGCAAGTGTTTGAACCAG 57.219 42.857 0.00 0.00 36.36 4.00
870 1044 3.128589 TGAAGCAAGTGTTTGAACCAGTC 59.871 43.478 0.00 0.00 36.36 3.51
887 1061 0.810031 GTCTTGGCACGATGCGGTAT 60.810 55.000 0.00 0.00 46.21 2.73
899 1073 3.525537 GATGCGGTATCCTGGATATGTG 58.474 50.000 18.85 12.54 0.00 3.21
900 1074 2.325484 TGCGGTATCCTGGATATGTGT 58.675 47.619 18.85 0.00 0.00 3.72
902 1076 4.093743 TGCGGTATCCTGGATATGTGTAT 58.906 43.478 18.85 0.00 0.00 2.29
903 1077 4.081697 TGCGGTATCCTGGATATGTGTATG 60.082 45.833 18.85 6.16 0.00 2.39
905 1079 5.410924 CGGTATCCTGGATATGTGTATGTG 58.589 45.833 18.85 0.00 0.00 3.21
906 1080 5.185056 CGGTATCCTGGATATGTGTATGTGA 59.815 44.000 18.85 0.00 0.00 3.58
907 1081 6.398918 GGTATCCTGGATATGTGTATGTGAC 58.601 44.000 18.85 4.69 0.00 3.67
908 1082 4.584327 TCCTGGATATGTGTATGTGACG 57.416 45.455 0.00 0.00 0.00 4.35
909 1083 4.211920 TCCTGGATATGTGTATGTGACGA 58.788 43.478 0.00 0.00 0.00 4.20
910 1084 4.278419 TCCTGGATATGTGTATGTGACGAG 59.722 45.833 0.00 0.00 0.00 4.18
911 1085 4.038042 CCTGGATATGTGTATGTGACGAGT 59.962 45.833 0.00 0.00 0.00 4.18
912 1086 5.240844 CCTGGATATGTGTATGTGACGAGTA 59.759 44.000 0.00 0.00 0.00 2.59
913 1087 6.068473 TGGATATGTGTATGTGACGAGTAC 57.932 41.667 0.00 0.00 0.00 2.73
914 1088 5.591067 TGGATATGTGTATGTGACGAGTACA 59.409 40.000 0.00 0.00 0.00 2.90
916 1090 3.564235 TGTGTATGTGACGAGTACACC 57.436 47.619 17.18 6.07 44.61 4.16
917 1091 2.885894 TGTGTATGTGACGAGTACACCA 59.114 45.455 17.18 7.80 44.61 4.17
918 1092 3.508402 TGTGTATGTGACGAGTACACCAT 59.492 43.478 17.18 0.00 44.61 3.55
920 1094 3.759618 TGTATGTGACGAGTACACCATGA 59.240 43.478 0.00 0.00 37.45 3.07
922 1096 1.068816 TGTGACGAGTACACCATGACG 60.069 52.381 0.00 0.00 37.45 4.35
923 1097 1.198408 GTGACGAGTACACCATGACGA 59.802 52.381 0.00 0.00 32.84 4.20
977 1169 0.741927 CGCTCCCGATTTAAACCGGT 60.742 55.000 19.63 0.00 43.93 5.28
999 1191 2.689034 CCCCCTCCCACTCTCACC 60.689 72.222 0.00 0.00 0.00 4.02
1001 1193 2.122729 CCCTCCCACTCTCACCCA 59.877 66.667 0.00 0.00 0.00 4.51
1003 1195 2.294078 CCTCCCACTCTCACCCACC 61.294 68.421 0.00 0.00 0.00 4.61
1004 1196 2.603473 TCCCACTCTCACCCACCG 60.603 66.667 0.00 0.00 0.00 4.94
1006 1198 4.742201 CCACTCTCACCCACCGCG 62.742 72.222 0.00 0.00 0.00 6.46
1007 1199 3.680786 CACTCTCACCCACCGCGA 61.681 66.667 8.23 0.00 0.00 5.87
1008 1200 2.915659 ACTCTCACCCACCGCGAA 60.916 61.111 8.23 0.00 0.00 4.70
1022 1214 4.273811 CGAAGCAGAGCAGAGCAA 57.726 55.556 0.00 0.00 0.00 3.91
1038 1230 1.209127 CAAAACTAGCCGTTGCCCG 59.791 57.895 0.00 0.00 38.69 6.13
1046 1239 2.902846 CCGTTGCCCGACCAACAA 60.903 61.111 15.22 0.00 44.01 2.83
1047 1240 2.482333 CCGTTGCCCGACCAACAAA 61.482 57.895 15.22 0.00 44.01 2.83
1048 1241 1.298788 CGTTGCCCGACCAACAAAC 60.299 57.895 15.22 0.00 44.01 2.93
1049 1242 1.810532 GTTGCCCGACCAACAAACA 59.189 52.632 11.61 0.00 43.45 2.83
1056 1249 0.307760 CGACCAACAAACACTCTGCC 59.692 55.000 0.00 0.00 0.00 4.85
1068 1261 1.066286 CACTCTGCCTCCTTCCTTCTG 60.066 57.143 0.00 0.00 0.00 3.02
1193 1411 4.429212 CCCGCGTCGACACCATCA 62.429 66.667 17.16 0.00 0.00 3.07
1277 1511 4.832823 TCCTGGTTGAAATCCCTCTTTTTC 59.167 41.667 0.00 0.00 33.44 2.29
1294 1529 0.984230 TTCTTTGTCCGGAGCTGGAT 59.016 50.000 3.06 0.00 40.91 3.41
1335 1570 4.650131 TGCTCTGATCTGATTCTGATCTGT 59.350 41.667 25.00 0.79 38.85 3.41
1337 1572 5.464057 GCTCTGATCTGATTCTGATCTGTTG 59.536 44.000 25.00 21.24 38.85 3.33
1404 1639 3.362399 CTCGCTGATGCTGGTCCGT 62.362 63.158 0.00 0.00 36.97 4.69
1478 1713 1.833787 GCCCAGAAGGTAACCACGGA 61.834 60.000 0.00 0.00 38.26 4.69
1480 1715 1.280998 CCCAGAAGGTAACCACGGATT 59.719 52.381 0.00 0.00 37.17 3.01
1482 1717 2.629051 CAGAAGGTAACCACGGATTCC 58.371 52.381 0.00 0.00 37.17 3.01
1483 1718 2.027561 CAGAAGGTAACCACGGATTCCA 60.028 50.000 3.09 0.00 37.17 3.53
1493 1733 2.822701 GGATTCCACCGGCGTTCC 60.823 66.667 6.01 0.00 0.00 3.62
1510 1750 2.285442 CCTTCCCTCCCCGTTCCT 60.285 66.667 0.00 0.00 0.00 3.36
1511 1751 2.670148 CCTTCCCTCCCCGTTCCTG 61.670 68.421 0.00 0.00 0.00 3.86
1513 1753 1.462627 TTCCCTCCCCGTTCCTGTT 60.463 57.895 0.00 0.00 0.00 3.16
1519 1759 2.646719 CCCGTTCCTGTTCGACGA 59.353 61.111 0.00 0.00 38.99 4.20
1525 1765 2.251893 GTTCCTGTTCGACGATCTGAC 58.748 52.381 12.70 2.89 0.00 3.51
1526 1766 1.530323 TCCTGTTCGACGATCTGACA 58.470 50.000 12.70 7.06 0.00 3.58
1527 1767 1.199327 TCCTGTTCGACGATCTGACAC 59.801 52.381 12.70 1.89 0.00 3.67
1530 1770 0.797249 GTTCGACGATCTGACACCGG 60.797 60.000 0.00 0.00 0.00 5.28
1531 1771 0.956902 TTCGACGATCTGACACCGGA 60.957 55.000 9.46 0.00 0.00 5.14
1533 1773 1.226323 GACGATCTGACACCGGACG 60.226 63.158 9.46 0.00 0.00 4.79
1621 1881 4.565850 GGGGAGGAGGAGCCCGAT 62.566 72.222 0.00 0.00 45.67 4.18
1674 1934 2.790791 CGAGCCTCGAAGCCCAGAT 61.791 63.158 8.82 0.00 43.74 2.90
1677 1937 0.397816 AGCCTCGAAGCCCAGATAGT 60.398 55.000 1.47 0.00 0.00 2.12
1688 1948 3.197766 AGCCCAGATAGTCGTCAATGAAA 59.802 43.478 0.00 0.00 0.00 2.69
1705 1974 2.101209 AAAGTTCAGACAACGGCGCG 62.101 55.000 6.90 0.00 0.00 6.86
1805 2074 4.735132 GGGCGCGCAGTGTGAGTA 62.735 66.667 34.42 0.00 41.96 2.59
1845 2116 0.872388 ATCTCGTTTTGTTCCACGCC 59.128 50.000 0.00 0.00 36.32 5.68
1846 2117 1.083015 CTCGTTTTGTTCCACGCCG 60.083 57.895 0.00 0.00 36.32 6.46
1847 2118 2.724358 CGTTTTGTTCCACGCCGC 60.724 61.111 0.00 0.00 0.00 6.53
1848 2119 2.724358 GTTTTGTTCCACGCCGCG 60.724 61.111 12.14 12.14 0.00 6.46
1849 2120 2.895865 TTTTGTTCCACGCCGCGA 60.896 55.556 21.79 0.00 0.00 5.87
1850 2121 2.255172 TTTTGTTCCACGCCGCGAT 61.255 52.632 21.79 0.29 0.00 4.58
1851 2122 2.177654 TTTTGTTCCACGCCGCGATC 62.178 55.000 21.79 0.00 0.00 3.69
1852 2123 3.583276 TTGTTCCACGCCGCGATCT 62.583 57.895 21.79 0.00 0.00 2.75
1854 2125 1.517694 GTTCCACGCCGCGATCTTA 60.518 57.895 21.79 0.00 0.00 2.10
1860 2131 1.206745 ACGCCGCGATCTTATTCGTG 61.207 55.000 21.79 0.00 46.37 4.35
1869 2140 4.926238 GCGATCTTATTCGTGGATGATTCT 59.074 41.667 0.00 0.00 41.16 2.40
1875 2146 3.333029 TTCGTGGATGATTCTGCTGAA 57.667 42.857 8.59 8.59 36.54 3.02
1879 2150 4.095334 TCGTGGATGATTCTGCTGAATTTG 59.905 41.667 18.52 5.89 42.43 2.32
1880 2151 4.095334 CGTGGATGATTCTGCTGAATTTGA 59.905 41.667 18.52 7.87 42.43 2.69
1881 2152 5.579718 GTGGATGATTCTGCTGAATTTGAG 58.420 41.667 18.52 0.00 42.43 3.02
1883 2154 4.643784 GGATGATTCTGCTGAATTTGAGGT 59.356 41.667 18.52 0.00 42.43 3.85
1885 2156 3.760151 TGATTCTGCTGAATTTGAGGTGG 59.240 43.478 18.52 0.00 42.43 4.61
1887 2158 1.074405 TCTGCTGAATTTGAGGTGGCT 59.926 47.619 0.00 0.00 0.00 4.75
1888 2159 1.201647 CTGCTGAATTTGAGGTGGCTG 59.798 52.381 0.00 0.00 0.00 4.85
1889 2160 1.202915 TGCTGAATTTGAGGTGGCTGA 60.203 47.619 0.00 0.00 0.00 4.26
1890 2161 2.097825 GCTGAATTTGAGGTGGCTGAT 58.902 47.619 0.00 0.00 0.00 2.90
1891 2162 2.494870 GCTGAATTTGAGGTGGCTGATT 59.505 45.455 0.00 0.00 0.00 2.57
1892 2163 3.428589 GCTGAATTTGAGGTGGCTGATTC 60.429 47.826 0.00 0.00 0.00 2.52
1893 2164 2.749076 TGAATTTGAGGTGGCTGATTCG 59.251 45.455 0.00 0.00 0.00 3.34
1894 2165 2.787473 ATTTGAGGTGGCTGATTCGA 57.213 45.000 0.00 0.00 0.00 3.71
1895 2166 2.559698 TTTGAGGTGGCTGATTCGAA 57.440 45.000 0.00 0.00 0.00 3.71
1896 2167 2.787473 TTGAGGTGGCTGATTCGAAT 57.213 45.000 11.20 11.20 0.00 3.34
1897 2168 2.028420 TGAGGTGGCTGATTCGAATG 57.972 50.000 16.96 2.98 0.00 2.67
1898 2169 1.554617 TGAGGTGGCTGATTCGAATGA 59.445 47.619 16.96 6.19 0.00 2.57
1899 2170 2.171237 TGAGGTGGCTGATTCGAATGAT 59.829 45.455 16.96 0.00 0.00 2.45
1900 2171 2.805099 GAGGTGGCTGATTCGAATGATC 59.195 50.000 16.96 2.09 0.00 2.92
1901 2172 1.876156 GGTGGCTGATTCGAATGATCC 59.124 52.381 16.96 13.10 0.00 3.36
1902 2173 2.564771 GTGGCTGATTCGAATGATCCA 58.435 47.619 16.96 15.82 0.00 3.41
1903 2174 2.945008 GTGGCTGATTCGAATGATCCAA 59.055 45.455 19.55 4.14 0.00 3.53
1904 2175 3.567164 GTGGCTGATTCGAATGATCCAAT 59.433 43.478 19.55 0.00 0.00 3.16
2032 2303 0.979665 CTGCTGGAGGAGGAGAACAA 59.020 55.000 0.00 0.00 42.77 2.83
2095 2369 1.542915 CGAGGAAGACGACCTGGTAAA 59.457 52.381 0.00 0.00 37.93 2.01
2097 2371 3.734293 CGAGGAAGACGACCTGGTAAATC 60.734 52.174 0.00 0.00 37.93 2.17
2099 2373 3.056035 AGGAAGACGACCTGGTAAATCAC 60.056 47.826 0.00 0.00 36.30 3.06
2100 2374 2.649331 AGACGACCTGGTAAATCACG 57.351 50.000 0.00 0.00 0.00 4.35
2101 2375 2.165167 AGACGACCTGGTAAATCACGA 58.835 47.619 9.90 0.00 0.00 4.35
2106 2380 2.740447 GACCTGGTAAATCACGAACCAC 59.260 50.000 0.00 0.00 38.36 4.16
2108 2382 1.730064 CTGGTAAATCACGAACCACCG 59.270 52.381 0.00 0.00 38.36 4.94
2109 2383 0.445043 GGTAAATCACGAACCACCGC 59.555 55.000 0.00 0.00 33.28 5.68
2111 2385 0.674269 TAAATCACGAACCACCGCCC 60.674 55.000 0.00 0.00 0.00 6.13
2112 2386 2.684192 AAATCACGAACCACCGCCCA 62.684 55.000 0.00 0.00 0.00 5.36
2130 2404 3.305608 GCCCACATTTCTTCAGAACCAAG 60.306 47.826 0.00 0.00 33.13 3.61
2136 2410 5.641209 ACATTTCTTCAGAACCAAGATCGAG 59.359 40.000 0.00 0.00 33.13 4.04
2137 2411 3.876274 TCTTCAGAACCAAGATCGAGG 57.124 47.619 5.09 5.09 0.00 4.63
2138 2412 2.093973 TCTTCAGAACCAAGATCGAGGC 60.094 50.000 6.41 0.00 0.00 4.70
2139 2413 0.537188 TCAGAACCAAGATCGAGGCC 59.463 55.000 0.00 0.00 0.00 5.19
2141 2415 0.539051 AGAACCAAGATCGAGGCCAG 59.461 55.000 5.01 0.00 0.00 4.85
2143 2417 1.841302 AACCAAGATCGAGGCCAGCA 61.841 55.000 5.01 0.00 0.00 4.41
2144 2418 1.147824 CCAAGATCGAGGCCAGCAT 59.852 57.895 5.01 0.00 0.00 3.79
2145 2419 1.164662 CCAAGATCGAGGCCAGCATG 61.165 60.000 5.01 0.00 0.00 4.06
2146 2420 0.463295 CAAGATCGAGGCCAGCATGT 60.463 55.000 5.01 0.00 0.00 3.21
2147 2421 0.254178 AAGATCGAGGCCAGCATGTT 59.746 50.000 5.01 0.00 0.00 2.71
2148 2422 0.179062 AGATCGAGGCCAGCATGTTC 60.179 55.000 5.01 0.00 0.00 3.18
2149 2423 1.153086 ATCGAGGCCAGCATGTTCC 60.153 57.895 5.01 0.00 0.00 3.62
2150 2424 1.630126 ATCGAGGCCAGCATGTTCCT 61.630 55.000 5.01 0.00 39.43 3.36
2151 2425 1.377725 CGAGGCCAGCATGTTCCTT 60.378 57.895 5.01 0.00 37.31 3.36
2152 2426 0.107703 CGAGGCCAGCATGTTCCTTA 60.108 55.000 5.01 0.00 37.31 2.69
2156 2430 2.171003 GGCCAGCATGTTCCTTAGTTT 58.829 47.619 0.00 0.00 0.00 2.66
2157 2431 2.094545 GGCCAGCATGTTCCTTAGTTTG 60.095 50.000 0.00 0.00 0.00 2.93
2166 2440 5.828299 TGTTCCTTAGTTTGTGTTCTTGG 57.172 39.130 0.00 0.00 0.00 3.61
2167 2441 5.258051 TGTTCCTTAGTTTGTGTTCTTGGT 58.742 37.500 0.00 0.00 0.00 3.67
2176 2454 2.229792 TGTGTTCTTGGTTGGCTGATC 58.770 47.619 0.00 0.00 0.00 2.92
2180 2458 3.245016 TGTTCTTGGTTGGCTGATCATCT 60.245 43.478 0.00 0.00 0.00 2.90
2181 2459 3.726557 TCTTGGTTGGCTGATCATCTT 57.273 42.857 0.00 0.00 0.00 2.40
2182 2460 3.349927 TCTTGGTTGGCTGATCATCTTG 58.650 45.455 0.00 0.00 0.00 3.02
2183 2461 3.009363 TCTTGGTTGGCTGATCATCTTGA 59.991 43.478 0.00 0.00 0.00 3.02
2184 2462 2.995283 TGGTTGGCTGATCATCTTGAG 58.005 47.619 0.00 0.00 0.00 3.02
2185 2463 1.674962 GGTTGGCTGATCATCTTGAGC 59.325 52.381 0.00 0.00 32.56 4.26
2187 2465 2.613133 GTTGGCTGATCATCTTGAGCTC 59.387 50.000 6.82 6.82 33.24 4.09
2188 2466 1.140452 TGGCTGATCATCTTGAGCTCC 59.860 52.381 12.15 0.00 33.24 4.70
2189 2467 1.417145 GGCTGATCATCTTGAGCTCCT 59.583 52.381 12.15 0.00 33.24 3.69
2190 2468 2.548493 GGCTGATCATCTTGAGCTCCTC 60.548 54.545 12.15 0.00 33.24 3.71
2193 2471 3.637694 CTGATCATCTTGAGCTCCTCTGA 59.362 47.826 12.15 9.33 33.24 3.27
2194 2472 4.224762 TGATCATCTTGAGCTCCTCTGAT 58.775 43.478 12.15 13.57 33.24 2.90
2195 2473 4.039366 TGATCATCTTGAGCTCCTCTGATG 59.961 45.833 12.15 17.36 40.11 3.07
2197 2475 2.244486 TCTTGAGCTCCTCTGATGGT 57.756 50.000 12.15 0.00 0.00 3.55
2198 2476 1.829849 TCTTGAGCTCCTCTGATGGTG 59.170 52.381 12.15 0.00 0.00 4.17
2199 2477 1.554160 CTTGAGCTCCTCTGATGGTGT 59.446 52.381 12.15 0.00 0.00 4.16
2507 2799 3.118075 TGGTGTCACCTGATGAGTGAAAA 60.118 43.478 22.56 0.00 45.37 2.29
2508 2800 3.882888 GGTGTCACCTGATGAGTGAAAAA 59.117 43.478 15.22 0.00 45.37 1.94
2515 2854 6.320926 TCACCTGATGAGTGAAAAATGTTGAA 59.679 34.615 0.00 0.00 41.17 2.69
2518 2857 6.860023 CCTGATGAGTGAAAAATGTTGAAGAC 59.140 38.462 0.00 0.00 0.00 3.01
2522 2861 5.885352 TGAGTGAAAAATGTTGAAGACTCCA 59.115 36.000 0.00 0.00 0.00 3.86
2526 2865 1.160137 AATGTTGAAGACTCCAGCGC 58.840 50.000 0.00 0.00 0.00 5.92
2527 2866 0.322975 ATGTTGAAGACTCCAGCGCT 59.677 50.000 2.64 2.64 0.00 5.92
2528 2867 0.601046 TGTTGAAGACTCCAGCGCTG 60.601 55.000 30.52 30.52 0.00 5.18
2529 2868 0.319900 GTTGAAGACTCCAGCGCTGA 60.320 55.000 38.06 22.07 0.00 4.26
2530 2869 0.392706 TTGAAGACTCCAGCGCTGAA 59.607 50.000 38.06 19.63 0.00 3.02
2531 2870 0.392706 TGAAGACTCCAGCGCTGAAA 59.607 50.000 38.06 23.53 0.00 2.69
2532 2871 1.002430 TGAAGACTCCAGCGCTGAAAT 59.998 47.619 38.06 21.84 0.00 2.17
2533 2872 1.663135 GAAGACTCCAGCGCTGAAATC 59.337 52.381 38.06 27.81 0.00 2.17
2534 2873 0.459237 AGACTCCAGCGCTGAAATCG 60.459 55.000 38.06 20.86 0.00 3.34
2543 2882 4.759564 CTGAAATCGCTGCAGCAC 57.240 55.556 36.03 21.01 42.21 4.40
2544 2883 2.168947 CTGAAATCGCTGCAGCACT 58.831 52.632 36.03 20.82 42.21 4.40
2547 2886 1.300971 GAAATCGCTGCAGCACTGGA 61.301 55.000 36.03 25.30 42.21 3.86
2594 2934 2.135139 CGTGCTTCAGTTTGAGCACTA 58.865 47.619 21.57 0.00 43.12 2.74
2595 2935 2.096713 CGTGCTTCAGTTTGAGCACTAC 60.097 50.000 21.57 1.68 43.12 2.73
2596 2936 3.134458 GTGCTTCAGTTTGAGCACTACT 58.866 45.455 18.25 0.00 42.58 2.57
2607 2947 0.681564 AGCACTACTCTCTCCGGTGG 60.682 60.000 0.00 0.00 0.00 4.61
2626 2966 0.109132 GCCGGATTTGGTGCTTCTTG 60.109 55.000 5.05 0.00 0.00 3.02
2631 2971 2.095718 GGATTTGGTGCTTCTTGACGAC 60.096 50.000 0.00 0.00 0.00 4.34
2635 2975 0.716108 GGTGCTTCTTGACGACGATG 59.284 55.000 0.00 0.00 0.00 3.84
2636 2976 0.716108 GTGCTTCTTGACGACGATGG 59.284 55.000 0.00 0.00 0.00 3.51
2637 2977 1.014044 TGCTTCTTGACGACGATGGC 61.014 55.000 0.00 0.00 0.00 4.40
2678 3018 7.118496 TGAATGTTAACCATGTTCCTTGTTT 57.882 32.000 2.48 0.00 32.82 2.83
2683 3023 8.239038 TGTTAACCATGTTCCTTGTTTATTCA 57.761 30.769 2.48 0.00 0.00 2.57
2684 3024 8.356657 TGTTAACCATGTTCCTTGTTTATTCAG 58.643 33.333 2.48 0.00 0.00 3.02
2685 3025 8.573035 GTTAACCATGTTCCTTGTTTATTCAGA 58.427 33.333 0.00 0.00 0.00 3.27
2713 3076 5.460419 CGCCTCAGATAATAGAAACTGTGTC 59.540 44.000 0.00 0.00 0.00 3.67
2769 3134 8.321353 TGTTCTCCATAAGCTCTGAATCTTTTA 58.679 33.333 0.00 0.00 0.00 1.52
2792 3157 2.195727 TCACACTGCAATCCTGGGATA 58.804 47.619 2.24 0.00 33.97 2.59
2793 3158 2.092968 TCACACTGCAATCCTGGGATAC 60.093 50.000 2.24 0.00 33.97 2.24
2835 3210 5.007724 CCGGGAGTTAATTCTGCTTGTTATC 59.992 44.000 0.00 0.00 0.00 1.75
2836 3211 5.817816 CGGGAGTTAATTCTGCTTGTTATCT 59.182 40.000 0.00 0.00 0.00 1.98
2877 3252 5.997746 CCTTGTTTATTCCACTCTGAAGTCA 59.002 40.000 0.00 0.00 31.71 3.41
2888 3263 2.464157 CTGAAGTCAGAACCTGGGAC 57.536 55.000 1.88 0.00 46.59 4.46
2906 3281 2.066262 GACGATTCTGACGAAAAGGCA 58.934 47.619 0.00 0.00 35.81 4.75
2940 3355 0.742635 GCAGACAGGGAAGCTACTGC 60.743 60.000 11.59 0.00 42.44 4.40
2941 3356 0.610174 CAGACAGGGAAGCTACTGCA 59.390 55.000 11.59 0.00 42.74 4.41
2944 3359 0.322975 ACAGGGAAGCTACTGCACTG 59.677 55.000 3.15 3.15 42.74 3.66
2945 3360 0.322975 CAGGGAAGCTACTGCACTGT 59.677 55.000 0.00 0.00 42.74 3.55
3006 3423 8.226819 TGATCTAGACAGAATAGACGATTTGT 57.773 34.615 0.00 0.00 33.50 2.83
3093 3526 9.466497 ACTAATTTACAATCATGTCACTCCAAT 57.534 29.630 0.00 0.00 41.05 3.16
3094 3527 9.726232 CTAATTTACAATCATGTCACTCCAATG 57.274 33.333 0.00 0.00 41.05 2.82
3108 3541 6.096001 GTCACTCCAATGCCAATTAGAAGATT 59.904 38.462 0.00 0.00 0.00 2.40
3109 3542 6.095860 TCACTCCAATGCCAATTAGAAGATTG 59.904 38.462 0.00 0.00 36.89 2.67
3122 3555 2.312741 AGAAGATTGGGCAATGGAGGAA 59.687 45.455 0.00 0.00 0.00 3.36
3132 3565 3.509575 GGCAATGGAGGAACACAAACATA 59.490 43.478 0.00 0.00 0.00 2.29
3134 3567 5.510520 GGCAATGGAGGAACACAAACATAAA 60.511 40.000 0.00 0.00 0.00 1.40
3143 3576 9.233232 GAGGAACACAAACATAAACAAAAGTAG 57.767 33.333 0.00 0.00 0.00 2.57
3249 3682 0.377905 GAGAGTAGTTCTCGGGCGTC 59.622 60.000 0.00 0.00 46.86 5.19
3314 3747 2.022764 TCGGTGTCATAACCTGCATG 57.977 50.000 0.00 0.00 38.14 4.06
3332 3766 5.761003 TGCATGTTCACAGAACAAACATAG 58.239 37.500 15.54 4.71 40.63 2.23
3478 3913 5.291971 GTCATGAAGTTTTCTGCACCATTT 58.708 37.500 0.00 0.00 38.45 2.32
3528 4003 6.998673 GTGCTTCCCACAATTAGGAATATACT 59.001 38.462 4.69 0.00 44.06 2.12
3529 4004 8.154856 GTGCTTCCCACAATTAGGAATATACTA 58.845 37.037 4.69 0.00 44.06 1.82
3530 4005 8.890472 TGCTTCCCACAATTAGGAATATACTAT 58.110 33.333 4.69 0.00 41.26 2.12
3531 4006 9.167311 GCTTCCCACAATTAGGAATATACTATG 57.833 37.037 4.69 0.00 41.26 2.23
3569 4280 5.683876 TTCAGATAGGCTATATCCCAAGC 57.316 43.478 7.08 0.00 38.03 4.01
3624 4335 8.964150 CATTGTTTCACAGCACATGATATATTG 58.036 33.333 0.00 0.00 0.00 1.90
3658 4369 4.775780 AGACAAGTAACTGTATGCCCACTA 59.224 41.667 0.00 0.00 0.00 2.74
3659 4370 4.828829 ACAAGTAACTGTATGCCCACTAC 58.171 43.478 0.00 0.00 0.00 2.73
3661 4372 5.221762 ACAAGTAACTGTATGCCCACTACAA 60.222 40.000 0.00 0.00 0.00 2.41
3677 4388 6.146021 CCCACTACAAAGATTTGCAATTGTTC 59.854 38.462 18.38 6.34 41.79 3.18
3692 4403 4.621068 ATTGTTCATACTGGCAATCACG 57.379 40.909 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 274 4.463788 CAATGGGTGGAGGGCCCC 62.464 72.222 21.43 10.33 45.49 5.80
145 309 5.559427 TTGGATGTCAAAATATGTCACCG 57.441 39.130 0.00 0.00 29.85 4.94
174 338 1.662629 CATGCTCGGACTTGCAGTAAG 59.337 52.381 0.00 0.00 42.74 2.34
180 344 2.437359 AGCCATGCTCGGACTTGC 60.437 61.111 0.00 0.00 30.62 4.01
182 346 0.613260 TAACAGCCATGCTCGGACTT 59.387 50.000 0.00 0.00 36.40 3.01
184 348 1.421410 CGTAACAGCCATGCTCGGAC 61.421 60.000 0.00 0.00 36.40 4.79
191 355 4.686091 CAGTACCATATCGTAACAGCCATG 59.314 45.833 0.00 0.00 0.00 3.66
193 357 3.491964 GCAGTACCATATCGTAACAGCCA 60.492 47.826 0.00 0.00 0.00 4.75
236 400 5.996644 TGAAAGATAAGGAAATCCGGCTAA 58.003 37.500 0.00 0.00 42.08 3.09
241 405 6.461509 CCCCATTTGAAAGATAAGGAAATCCG 60.462 42.308 0.00 0.00 42.08 4.18
250 414 6.024563 TGGATAGCCCCATTTGAAAGATAA 57.975 37.500 0.00 0.00 0.00 1.75
273 437 5.415701 AGCATCCACACGTTTGAAATAGATT 59.584 36.000 2.58 0.00 0.00 2.40
276 440 4.154015 TGAGCATCCACACGTTTGAAATAG 59.846 41.667 2.58 0.00 0.00 1.73
285 449 1.229428 CAAGTTGAGCATCCACACGT 58.771 50.000 0.00 0.00 32.30 4.49
286 450 0.110056 GCAAGTTGAGCATCCACACG 60.110 55.000 7.16 0.00 32.30 4.49
287 451 0.953727 TGCAAGTTGAGCATCCACAC 59.046 50.000 7.16 0.00 37.02 3.82
288 452 1.689984 TTGCAAGTTGAGCATCCACA 58.310 45.000 7.16 0.00 42.33 4.17
289 453 3.181493 CCTATTGCAAGTTGAGCATCCAC 60.181 47.826 7.16 0.00 42.33 4.02
290 454 3.018856 CCTATTGCAAGTTGAGCATCCA 58.981 45.455 7.16 0.00 42.33 3.41
292 456 3.314635 CCTCCTATTGCAAGTTGAGCATC 59.685 47.826 7.16 0.00 42.33 3.91
293 457 3.054139 TCCTCCTATTGCAAGTTGAGCAT 60.054 43.478 7.16 0.00 42.33 3.79
294 458 2.305635 TCCTCCTATTGCAAGTTGAGCA 59.694 45.455 7.16 0.00 40.85 4.26
295 459 2.991250 TCCTCCTATTGCAAGTTGAGC 58.009 47.619 7.16 0.00 0.00 4.26
296 460 3.314635 GCATCCTCCTATTGCAAGTTGAG 59.685 47.826 7.16 9.79 36.40 3.02
298 462 3.285484 AGCATCCTCCTATTGCAAGTTG 58.715 45.455 4.94 0.00 38.84 3.16
299 463 3.659183 AGCATCCTCCTATTGCAAGTT 57.341 42.857 4.94 0.00 38.84 2.66
313 478 5.009210 ACTCTCGTAGACAAAGATAGCATCC 59.991 44.000 0.00 0.00 0.00 3.51
336 501 5.353400 GCAACAGGTATCTTGGTAAGGTAAC 59.647 44.000 0.00 0.00 31.74 2.50
354 519 8.816640 AAACAAGGTAAATGAAATAGCAACAG 57.183 30.769 0.00 0.00 0.00 3.16
368 533 8.850156 ACTAGAGTCGTAGTAAAACAAGGTAAA 58.150 33.333 0.00 0.00 31.14 2.01
384 549 0.797542 GCACGAGACACTAGAGTCGT 59.202 55.000 13.68 7.77 46.15 4.34
388 553 0.517755 ACACGCACGAGACACTAGAG 59.482 55.000 0.00 0.00 0.00 2.43
455 620 8.652463 TGTACATAAACATGTTCTGACGTAATG 58.348 33.333 21.50 13.15 36.08 1.90
463 628 6.955407 CACGATGTGTACATAAACATGTTCTG 59.045 38.462 12.39 14.51 37.15 3.02
465 630 6.827641 ACACGATGTGTACATAAACATGTTC 58.172 36.000 12.39 0.00 45.56 3.18
482 648 0.425656 GCAAAACGCGAAACACGATG 59.574 50.000 15.93 1.00 45.77 3.84
487 653 2.350007 GGTCTATGCAAAACGCGAAACA 60.350 45.455 15.93 3.55 46.97 2.83
488 654 2.239201 GGTCTATGCAAAACGCGAAAC 58.761 47.619 15.93 0.00 46.97 2.78
489 655 1.874231 TGGTCTATGCAAAACGCGAAA 59.126 42.857 15.93 0.00 46.97 3.46
492 658 0.521242 GCTGGTCTATGCAAAACGCG 60.521 55.000 3.53 3.53 46.97 6.01
563 737 1.686052 ACCCGCCCGACGTTATAATTA 59.314 47.619 0.00 0.00 41.42 1.40
564 738 0.465287 ACCCGCCCGACGTTATAATT 59.535 50.000 0.00 0.00 41.42 1.40
579 753 1.514873 GGTACACGACGCTAACCCG 60.515 63.158 0.00 0.00 0.00 5.28
580 754 1.586028 TGGTACACGACGCTAACCC 59.414 57.895 9.73 0.00 0.00 4.11
593 767 3.314357 GTGATTAAAGCCCCGAATGGTAC 59.686 47.826 0.00 0.00 0.00 3.34
594 768 3.547746 GTGATTAAAGCCCCGAATGGTA 58.452 45.455 0.00 0.00 0.00 3.25
595 769 2.375146 GTGATTAAAGCCCCGAATGGT 58.625 47.619 0.00 0.00 0.00 3.55
596 770 1.333619 CGTGATTAAAGCCCCGAATGG 59.666 52.381 0.00 0.00 0.00 3.16
597 771 2.014128 ACGTGATTAAAGCCCCGAATG 58.986 47.619 0.00 0.00 0.00 2.67
598 772 2.014128 CACGTGATTAAAGCCCCGAAT 58.986 47.619 10.90 0.00 0.00 3.34
599 773 1.444836 CACGTGATTAAAGCCCCGAA 58.555 50.000 10.90 0.00 0.00 4.30
600 774 0.391927 CCACGTGATTAAAGCCCCGA 60.392 55.000 19.30 0.00 0.00 5.14
601 775 0.675522 ACCACGTGATTAAAGCCCCG 60.676 55.000 19.30 0.00 0.00 5.73
602 776 1.471287 GAACCACGTGATTAAAGCCCC 59.529 52.381 19.30 0.00 0.00 5.80
603 777 2.433436 AGAACCACGTGATTAAAGCCC 58.567 47.619 19.30 0.00 0.00 5.19
604 778 4.453136 TGTAAGAACCACGTGATTAAAGCC 59.547 41.667 19.30 0.00 0.00 4.35
605 779 5.600908 TGTAAGAACCACGTGATTAAAGC 57.399 39.130 19.30 2.94 0.00 3.51
614 788 2.821969 AGTACCGATGTAAGAACCACGT 59.178 45.455 0.00 0.00 0.00 4.49
615 789 3.498927 AGTACCGATGTAAGAACCACG 57.501 47.619 0.00 0.00 0.00 4.94
617 791 6.406177 GGAATGTAGTACCGATGTAAGAACCA 60.406 42.308 0.00 0.00 0.00 3.67
629 803 4.508124 GCATTTGAGAGGAATGTAGTACCG 59.492 45.833 0.00 0.00 36.96 4.02
632 806 5.104776 AGCTGCATTTGAGAGGAATGTAGTA 60.105 40.000 13.66 0.00 44.18 1.82
633 807 3.944015 GCTGCATTTGAGAGGAATGTAGT 59.056 43.478 13.66 0.00 44.18 2.73
634 808 4.197750 AGCTGCATTTGAGAGGAATGTAG 58.802 43.478 1.02 9.57 44.73 2.74
686 860 2.123589 TGTCGGATTATGTGGGGATGT 58.876 47.619 0.00 0.00 0.00 3.06
712 886 1.593006 CAGTATTTGATGGTCGTCGCC 59.407 52.381 0.00 0.00 0.00 5.54
722 896 1.400494 GCGAAACGGGCAGTATTTGAT 59.600 47.619 0.00 0.00 0.00 2.57
727 901 1.467342 GAAAAGCGAAACGGGCAGTAT 59.533 47.619 0.00 0.00 0.00 2.12
743 917 3.827722 ACATTTCTCTGGGTTCGGAAAA 58.172 40.909 0.00 0.00 32.60 2.29
745 919 4.627284 TTACATTTCTCTGGGTTCGGAA 57.373 40.909 0.00 0.00 0.00 4.30
752 926 5.334105 CGTGTTCTGTTTACATTTCTCTGGG 60.334 44.000 0.00 0.00 0.00 4.45
762 936 2.159268 TCGGTGTCGTGTTCTGTTTACA 60.159 45.455 0.00 0.00 37.69 2.41
763 937 2.462889 TCGGTGTCGTGTTCTGTTTAC 58.537 47.619 0.00 0.00 37.69 2.01
768 942 1.521423 GAGTTTCGGTGTCGTGTTCTG 59.479 52.381 0.00 0.00 37.69 3.02
771 945 0.872881 CGGAGTTTCGGTGTCGTGTT 60.873 55.000 0.00 0.00 37.69 3.32
789 963 3.604202 CGCGGATTCGGTTCGACG 61.604 66.667 0.00 0.00 34.89 5.12
809 983 1.408822 GCTCATGGTTCAGGGGTTAGG 60.409 57.143 0.00 0.00 0.00 2.69
810 984 1.281867 TGCTCATGGTTCAGGGGTTAG 59.718 52.381 0.00 0.00 0.00 2.34
811 985 1.281867 CTGCTCATGGTTCAGGGGTTA 59.718 52.381 0.00 0.00 0.00 2.85
812 986 0.038744 CTGCTCATGGTTCAGGGGTT 59.961 55.000 0.00 0.00 0.00 4.11
819 993 1.251251 AGTTTGGCTGCTCATGGTTC 58.749 50.000 0.00 0.00 0.00 3.62
868 1042 0.810031 ATACCGCATCGTGCCAAGAC 60.810 55.000 4.73 0.00 41.12 3.01
870 1044 1.498865 GGATACCGCATCGTGCCAAG 61.499 60.000 4.73 0.00 41.12 3.61
887 1061 4.211920 TCGTCACATACACATATCCAGGA 58.788 43.478 0.00 0.00 0.00 3.86
899 1073 4.103357 GTCATGGTGTACTCGTCACATAC 58.897 47.826 0.00 0.00 37.52 2.39
900 1074 3.181504 CGTCATGGTGTACTCGTCACATA 60.182 47.826 0.00 0.00 37.52 2.29
902 1076 1.068816 CGTCATGGTGTACTCGTCACA 60.069 52.381 0.00 0.00 37.52 3.58
903 1077 1.198408 TCGTCATGGTGTACTCGTCAC 59.802 52.381 0.00 0.00 35.36 3.67
905 1079 2.451132 CATCGTCATGGTGTACTCGTC 58.549 52.381 0.00 0.00 0.00 4.20
906 1080 1.134367 CCATCGTCATGGTGTACTCGT 59.866 52.381 0.00 0.00 44.46 4.18
907 1081 1.840181 CCATCGTCATGGTGTACTCG 58.160 55.000 0.00 0.00 44.46 4.18
916 1090 1.091771 GTGCAGGGTCCATCGTCATG 61.092 60.000 0.00 0.00 0.00 3.07
917 1091 1.221840 GTGCAGGGTCCATCGTCAT 59.778 57.895 0.00 0.00 0.00 3.06
918 1092 1.480212 AAGTGCAGGGTCCATCGTCA 61.480 55.000 0.00 0.00 0.00 4.35
920 1094 0.981183 TAAAGTGCAGGGTCCATCGT 59.019 50.000 0.00 0.00 0.00 3.73
922 1096 3.065371 CGAATTAAAGTGCAGGGTCCATC 59.935 47.826 0.00 0.00 0.00 3.51
923 1097 3.016736 CGAATTAAAGTGCAGGGTCCAT 58.983 45.455 0.00 0.00 0.00 3.41
926 1100 2.418976 GGTCGAATTAAAGTGCAGGGTC 59.581 50.000 0.00 0.00 0.00 4.46
929 1103 2.073816 ACGGTCGAATTAAAGTGCAGG 58.926 47.619 0.00 0.00 0.00 4.85
930 1104 3.479006 CAACGGTCGAATTAAAGTGCAG 58.521 45.455 0.00 0.00 0.00 4.41
931 1105 2.224549 CCAACGGTCGAATTAAAGTGCA 59.775 45.455 0.00 0.00 0.00 4.57
932 1106 2.846693 CCAACGGTCGAATTAAAGTGC 58.153 47.619 0.00 0.00 0.00 4.40
992 1184 2.125912 CTTCGCGGTGGGTGAGAG 60.126 66.667 6.13 0.00 36.33 3.20
993 1185 4.373116 GCTTCGCGGTGGGTGAGA 62.373 66.667 6.13 0.00 36.33 3.27
995 1187 4.680237 CTGCTTCGCGGTGGGTGA 62.680 66.667 6.13 0.00 0.00 4.02
997 1189 4.379243 CTCTGCTTCGCGGTGGGT 62.379 66.667 6.13 0.00 36.18 4.51
1001 1193 3.639541 CTCTGCTCTGCTTCGCGGT 62.640 63.158 6.13 0.00 36.18 5.68
1003 1195 3.552839 GCTCTGCTCTGCTTCGCG 61.553 66.667 0.00 0.00 0.00 5.87
1004 1196 1.572085 TTTGCTCTGCTCTGCTTCGC 61.572 55.000 0.00 0.00 0.00 4.70
1006 1198 1.878734 AGTTTTGCTCTGCTCTGCTTC 59.121 47.619 0.00 0.00 0.00 3.86
1007 1199 1.978454 AGTTTTGCTCTGCTCTGCTT 58.022 45.000 0.00 0.00 0.00 3.91
1008 1200 2.697654 CTAGTTTTGCTCTGCTCTGCT 58.302 47.619 0.00 0.00 0.00 4.24
1022 1214 1.670083 GTCGGGCAACGGCTAGTTT 60.670 57.895 0.00 0.00 45.50 2.66
1038 1230 1.604278 GAGGCAGAGTGTTTGTTGGTC 59.396 52.381 0.00 0.00 0.00 4.02
1046 1239 1.349357 GAAGGAAGGAGGCAGAGTGTT 59.651 52.381 0.00 0.00 0.00 3.32
1047 1240 0.980423 GAAGGAAGGAGGCAGAGTGT 59.020 55.000 0.00 0.00 0.00 3.55
1048 1241 1.066286 CAGAAGGAAGGAGGCAGAGTG 60.066 57.143 0.00 0.00 0.00 3.51
1049 1242 1.274712 CAGAAGGAAGGAGGCAGAGT 58.725 55.000 0.00 0.00 0.00 3.24
1056 1249 1.209261 GGGAGAAGCAGAAGGAAGGAG 59.791 57.143 0.00 0.00 0.00 3.69
1244 1464 4.402056 TTTCAACCAGGATCTATCGACC 57.598 45.455 0.00 0.00 0.00 4.79
1245 1465 4.991687 GGATTTCAACCAGGATCTATCGAC 59.008 45.833 0.00 0.00 0.00 4.20
1260 1494 6.460953 CGGACAAAGAAAAAGAGGGATTTCAA 60.461 38.462 0.00 0.00 37.87 2.69
1277 1511 0.745845 CCATCCAGCTCCGGACAAAG 60.746 60.000 0.00 0.00 38.07 2.77
1319 1554 3.743584 CGCCCAACAGATCAGAATCAGAT 60.744 47.826 0.00 0.00 34.07 2.90
1478 1713 2.814913 GAAGGGAACGCCGGTGGAAT 62.815 60.000 21.14 4.79 33.83 3.01
1480 1715 4.011517 GAAGGGAACGCCGGTGGA 62.012 66.667 21.14 0.00 33.83 4.02
1486 1721 4.111053 GGGAGGGAAGGGAACGCC 62.111 72.222 0.00 0.00 0.00 5.68
1490 1730 1.921857 GAACGGGGAGGGAAGGGAA 60.922 63.158 0.00 0.00 0.00 3.97
1492 1732 3.408853 GGAACGGGGAGGGAAGGG 61.409 72.222 0.00 0.00 0.00 3.95
1493 1733 2.285442 AGGAACGGGGAGGGAAGG 60.285 66.667 0.00 0.00 0.00 3.46
1498 1738 2.264794 CGAACAGGAACGGGGAGG 59.735 66.667 0.00 0.00 0.00 4.30
1510 1750 0.109919 CGGTGTCAGATCGTCGAACA 60.110 55.000 0.00 0.00 0.00 3.18
1511 1751 0.797249 CCGGTGTCAGATCGTCGAAC 60.797 60.000 0.00 0.00 0.00 3.95
1513 1753 1.376295 TCCGGTGTCAGATCGTCGA 60.376 57.895 0.00 0.00 0.00 4.20
1530 1770 2.019337 AAAAACCGGAGCACACGTC 58.981 52.632 9.46 0.00 0.00 4.34
1531 1771 4.228899 AAAAACCGGAGCACACGT 57.771 50.000 9.46 0.00 0.00 4.49
1606 1866 3.934962 GCATCGGGCTCCTCCTCC 61.935 72.222 0.00 0.00 40.25 4.30
1659 1919 0.032815 GACTATCTGGGCTTCGAGGC 59.967 60.000 11.69 11.69 40.51 4.70
1674 1934 5.838529 TGTCTGAACTTTCATTGACGACTA 58.161 37.500 0.00 0.00 36.01 2.59
1677 1937 4.026062 CGTTGTCTGAACTTTCATTGACGA 60.026 41.667 0.00 5.04 36.01 4.20
1688 1948 3.036084 CGCGCCGTTGTCTGAACT 61.036 61.111 0.00 0.00 0.00 3.01
1821 2090 3.555518 GTGGAACAAAACGAGATTCTGC 58.444 45.455 0.00 0.00 44.16 4.26
1822 2091 3.799035 CGTGGAACAAAACGAGATTCTG 58.201 45.455 0.00 0.00 44.16 3.02
1845 2116 2.661594 TCATCCACGAATAAGATCGCG 58.338 47.619 0.00 0.00 46.51 5.87
1846 2117 4.926238 AGAATCATCCACGAATAAGATCGC 59.074 41.667 0.00 0.00 46.51 4.58
1848 2119 5.931146 AGCAGAATCATCCACGAATAAGATC 59.069 40.000 0.00 0.00 0.00 2.75
1849 2120 5.699915 CAGCAGAATCATCCACGAATAAGAT 59.300 40.000 0.00 0.00 0.00 2.40
1850 2121 5.052481 CAGCAGAATCATCCACGAATAAGA 58.948 41.667 0.00 0.00 0.00 2.10
1851 2122 5.052481 TCAGCAGAATCATCCACGAATAAG 58.948 41.667 0.00 0.00 0.00 1.73
1852 2123 5.022282 TCAGCAGAATCATCCACGAATAA 57.978 39.130 0.00 0.00 0.00 1.40
1854 2125 3.548745 TCAGCAGAATCATCCACGAAT 57.451 42.857 0.00 0.00 0.00 3.34
1860 2131 4.643784 ACCTCAAATTCAGCAGAATCATCC 59.356 41.667 4.66 0.00 43.52 3.51
1869 2140 1.202915 TCAGCCACCTCAAATTCAGCA 60.203 47.619 0.00 0.00 0.00 4.41
1875 2146 2.787473 TCGAATCAGCCACCTCAAAT 57.213 45.000 0.00 0.00 0.00 2.32
1879 2150 2.315925 TCATTCGAATCAGCCACCTC 57.684 50.000 7.92 0.00 0.00 3.85
1880 2151 2.486191 GGATCATTCGAATCAGCCACCT 60.486 50.000 11.77 0.00 0.00 4.00
1881 2152 1.876156 GGATCATTCGAATCAGCCACC 59.124 52.381 11.77 4.81 0.00 4.61
1883 2154 3.280197 TTGGATCATTCGAATCAGCCA 57.720 42.857 15.48 15.48 0.00 4.75
1885 2156 3.567164 ACCATTGGATCATTCGAATCAGC 59.433 43.478 10.37 0.00 28.89 4.26
1887 2158 4.949238 ACAACCATTGGATCATTCGAATCA 59.051 37.500 10.37 0.00 28.89 2.57
1888 2159 5.163622 ACACAACCATTGGATCATTCGAATC 60.164 40.000 10.37 0.00 28.89 2.52
1889 2160 4.706476 ACACAACCATTGGATCATTCGAAT 59.294 37.500 10.37 4.39 31.23 3.34
1890 2161 4.078537 ACACAACCATTGGATCATTCGAA 58.921 39.130 10.37 0.00 34.12 3.71
1891 2162 3.439825 CACACAACCATTGGATCATTCGA 59.560 43.478 10.37 0.00 34.12 3.71
1892 2163 3.427909 CCACACAACCATTGGATCATTCG 60.428 47.826 10.37 0.00 31.39 3.34
1893 2164 3.511146 ACCACACAACCATTGGATCATTC 59.489 43.478 10.37 0.00 34.24 2.67
1894 2165 3.258872 CACCACACAACCATTGGATCATT 59.741 43.478 10.37 0.00 34.24 2.57
1895 2166 2.827322 CACCACACAACCATTGGATCAT 59.173 45.455 10.37 0.00 34.24 2.45
1896 2167 2.237643 CACCACACAACCATTGGATCA 58.762 47.619 10.37 0.00 34.24 2.92
1897 2168 1.067635 GCACCACACAACCATTGGATC 60.068 52.381 10.37 0.00 34.24 3.36
1898 2169 0.968405 GCACCACACAACCATTGGAT 59.032 50.000 10.37 0.00 34.24 3.41
1899 2170 0.396278 TGCACCACACAACCATTGGA 60.396 50.000 10.37 0.00 34.24 3.53
1900 2171 0.032403 CTGCACCACACAACCATTGG 59.968 55.000 0.00 0.00 36.39 3.16
1901 2172 0.598158 GCTGCACCACACAACCATTG 60.598 55.000 0.00 0.00 0.00 2.82
1902 2173 0.756442 AGCTGCACCACACAACCATT 60.756 50.000 1.02 0.00 0.00 3.16
1903 2174 1.152694 AGCTGCACCACACAACCAT 60.153 52.632 1.02 0.00 0.00 3.55
1904 2175 2.120282 CAGCTGCACCACACAACCA 61.120 57.895 0.00 0.00 0.00 3.67
2095 2369 3.632080 TGGGCGGTGGTTCGTGAT 61.632 61.111 0.00 0.00 0.00 3.06
2097 2371 4.920112 TGTGGGCGGTGGTTCGTG 62.920 66.667 0.00 0.00 0.00 4.35
2099 2373 2.195123 GAAATGTGGGCGGTGGTTCG 62.195 60.000 0.00 0.00 0.00 3.95
2100 2374 0.893727 AGAAATGTGGGCGGTGGTTC 60.894 55.000 0.00 0.00 0.00 3.62
2101 2375 0.469144 AAGAAATGTGGGCGGTGGTT 60.469 50.000 0.00 0.00 0.00 3.67
2106 2380 1.200020 GTTCTGAAGAAATGTGGGCGG 59.800 52.381 0.00 0.00 35.58 6.13
2108 2382 2.238521 TGGTTCTGAAGAAATGTGGGC 58.761 47.619 0.00 0.00 35.58 5.36
2109 2383 4.144297 TCTTGGTTCTGAAGAAATGTGGG 58.856 43.478 0.00 0.00 35.58 4.61
2111 2385 5.409520 TCGATCTTGGTTCTGAAGAAATGTG 59.590 40.000 0.00 0.00 35.58 3.21
2112 2386 5.551233 TCGATCTTGGTTCTGAAGAAATGT 58.449 37.500 0.00 0.00 35.58 2.71
2130 2404 1.162800 GGAACATGCTGGCCTCGATC 61.163 60.000 3.32 0.00 0.00 3.69
2136 2410 1.839424 AACTAAGGAACATGCTGGCC 58.161 50.000 0.00 0.00 0.00 5.36
2137 2411 2.558359 ACAAACTAAGGAACATGCTGGC 59.442 45.455 0.00 0.00 0.00 4.85
2138 2412 3.569701 ACACAAACTAAGGAACATGCTGG 59.430 43.478 0.00 0.00 0.00 4.85
2139 2413 4.836125 ACACAAACTAAGGAACATGCTG 57.164 40.909 0.00 0.00 0.00 4.41
2141 2415 5.438761 AGAACACAAACTAAGGAACATGC 57.561 39.130 0.00 0.00 0.00 4.06
2143 2417 5.891551 ACCAAGAACACAAACTAAGGAACAT 59.108 36.000 0.00 0.00 0.00 2.71
2144 2418 5.258051 ACCAAGAACACAAACTAAGGAACA 58.742 37.500 0.00 0.00 0.00 3.18
2145 2419 5.830000 ACCAAGAACACAAACTAAGGAAC 57.170 39.130 0.00 0.00 0.00 3.62
2146 2420 5.126384 CCAACCAAGAACACAAACTAAGGAA 59.874 40.000 0.00 0.00 0.00 3.36
2147 2421 4.642885 CCAACCAAGAACACAAACTAAGGA 59.357 41.667 0.00 0.00 0.00 3.36
2148 2422 4.736464 GCCAACCAAGAACACAAACTAAGG 60.736 45.833 0.00 0.00 0.00 2.69
2149 2423 4.097892 AGCCAACCAAGAACACAAACTAAG 59.902 41.667 0.00 0.00 0.00 2.18
2150 2424 4.020543 AGCCAACCAAGAACACAAACTAA 58.979 39.130 0.00 0.00 0.00 2.24
2151 2425 3.380004 CAGCCAACCAAGAACACAAACTA 59.620 43.478 0.00 0.00 0.00 2.24
2152 2426 2.166254 CAGCCAACCAAGAACACAAACT 59.834 45.455 0.00 0.00 0.00 2.66
2156 2430 2.229792 GATCAGCCAACCAAGAACACA 58.770 47.619 0.00 0.00 0.00 3.72
2157 2431 2.229792 TGATCAGCCAACCAAGAACAC 58.770 47.619 0.00 0.00 0.00 3.32
2166 2440 2.613133 GAGCTCAAGATGATCAGCCAAC 59.387 50.000 9.40 0.00 0.00 3.77
2167 2441 2.421107 GGAGCTCAAGATGATCAGCCAA 60.421 50.000 17.19 0.00 0.00 4.52
2176 2454 2.435069 ACCATCAGAGGAGCTCAAGATG 59.565 50.000 17.19 19.49 41.01 2.90
2180 2458 1.277273 CACACCATCAGAGGAGCTCAA 59.723 52.381 17.19 0.00 32.06 3.02
2181 2459 0.900421 CACACCATCAGAGGAGCTCA 59.100 55.000 17.19 0.00 32.06 4.26
2182 2460 0.177604 CCACACCATCAGAGGAGCTC 59.822 60.000 4.71 4.71 0.00 4.09
2183 2461 1.908340 GCCACACCATCAGAGGAGCT 61.908 60.000 0.00 0.00 0.00 4.09
2184 2462 1.451028 GCCACACCATCAGAGGAGC 60.451 63.158 0.00 0.00 0.00 4.70
2185 2463 0.107800 CTGCCACACCATCAGAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
2187 2465 1.077930 CCTGCCACACCATCAGAGG 60.078 63.158 0.00 0.00 0.00 3.69
2188 2466 0.037303 AACCTGCCACACCATCAGAG 59.963 55.000 0.00 0.00 0.00 3.35
2189 2467 0.036732 GAACCTGCCACACCATCAGA 59.963 55.000 0.00 0.00 0.00 3.27
2190 2468 1.300971 CGAACCTGCCACACCATCAG 61.301 60.000 0.00 0.00 0.00 2.90
2193 2471 2.034066 CCGAACCTGCCACACCAT 59.966 61.111 0.00 0.00 0.00 3.55
2194 2472 4.947147 GCCGAACCTGCCACACCA 62.947 66.667 0.00 0.00 0.00 4.17
2195 2473 4.643387 AGCCGAACCTGCCACACC 62.643 66.667 0.00 0.00 0.00 4.16
2375 2667 1.153061 CATCCCCTGCATGATGGCT 59.847 57.895 0.00 0.00 35.75 4.75
2482 2774 0.738762 CTCATCAGGTGACACCAGCG 60.739 60.000 26.30 14.00 44.94 5.18
2507 2799 1.160137 GCGCTGGAGTCTTCAACATT 58.840 50.000 0.00 0.00 0.00 2.71
2508 2800 0.322975 AGCGCTGGAGTCTTCAACAT 59.677 50.000 10.39 0.00 0.00 2.71
2515 2854 0.459237 CGATTTCAGCGCTGGAGTCT 60.459 55.000 35.36 16.73 0.00 3.24
2526 2865 0.179197 CAGTGCTGCAGCGATTTCAG 60.179 55.000 32.11 14.31 45.83 3.02
2527 2866 1.579964 CCAGTGCTGCAGCGATTTCA 61.580 55.000 32.11 12.29 45.83 2.69
2528 2867 1.136147 CCAGTGCTGCAGCGATTTC 59.864 57.895 32.11 19.03 45.83 2.17
2529 2868 1.302752 TCCAGTGCTGCAGCGATTT 60.303 52.632 32.11 15.38 45.83 2.17
2530 2869 1.744368 CTCCAGTGCTGCAGCGATT 60.744 57.895 32.11 17.91 45.83 3.34
2531 2870 2.125229 CTCCAGTGCTGCAGCGAT 60.125 61.111 32.11 20.98 45.83 4.58
2532 2871 3.619767 ACTCCAGTGCTGCAGCGA 61.620 61.111 32.11 21.77 45.83 4.93
2533 2872 3.420606 CACTCCAGTGCTGCAGCG 61.421 66.667 32.11 19.51 45.83 5.18
2534 2873 3.054503 CCACTCCAGTGCTGCAGC 61.055 66.667 31.89 31.89 44.34 5.25
2535 2874 0.820891 AAACCACTCCAGTGCTGCAG 60.821 55.000 10.11 10.11 44.34 4.41
2536 2875 0.819259 GAAACCACTCCAGTGCTGCA 60.819 55.000 0.00 0.00 44.34 4.41
2537 2876 1.518903 GGAAACCACTCCAGTGCTGC 61.519 60.000 0.76 0.00 44.34 5.25
2538 2877 1.230635 CGGAAACCACTCCAGTGCTG 61.231 60.000 0.76 0.00 44.34 4.41
2539 2878 1.071471 CGGAAACCACTCCAGTGCT 59.929 57.895 0.76 0.00 44.34 4.40
2540 2879 2.617274 GCGGAAACCACTCCAGTGC 61.617 63.158 0.76 0.00 44.34 4.40
2541 2880 1.071471 AGCGGAAACCACTCCAGTG 59.929 57.895 0.00 0.00 45.23 3.66
2542 2881 1.071471 CAGCGGAAACCACTCCAGT 59.929 57.895 0.00 0.00 34.91 4.00
2543 2882 0.535102 AACAGCGGAAACCACTCCAG 60.535 55.000 0.00 0.00 34.91 3.86
2544 2883 0.817634 CAACAGCGGAAACCACTCCA 60.818 55.000 0.00 0.00 34.91 3.86
2547 2886 1.470051 AAACAACAGCGGAAACCACT 58.530 45.000 0.00 0.00 0.00 4.00
2556 2895 0.294304 CGCAACACAAAACAACAGCG 59.706 50.000 0.00 0.00 37.91 5.18
2607 2947 0.109132 CAAGAAGCACCAAATCCGGC 60.109 55.000 0.00 0.00 0.00 6.13
2610 2950 2.095718 GTCGTCAAGAAGCACCAAATCC 60.096 50.000 0.00 0.00 0.00 3.01
2626 2966 3.554692 CAAGCCGCCATCGTCGTC 61.555 66.667 0.00 0.00 0.00 4.20
2631 2971 0.861837 GAGATAACAAGCCGCCATCG 59.138 55.000 0.00 0.00 0.00 3.84
2635 2975 1.398390 CAACTGAGATAACAAGCCGCC 59.602 52.381 0.00 0.00 0.00 6.13
2636 2976 2.346803 TCAACTGAGATAACAAGCCGC 58.653 47.619 0.00 0.00 0.00 6.53
2637 2977 4.393062 ACATTCAACTGAGATAACAAGCCG 59.607 41.667 0.00 0.00 0.00 5.52
2678 3018 1.474330 TCTGAGGCGCTGTCTGAATA 58.526 50.000 7.64 0.00 0.00 1.75
2683 3023 3.491342 TCTATTATCTGAGGCGCTGTCT 58.509 45.455 7.64 0.00 0.00 3.41
2684 3024 3.924918 TCTATTATCTGAGGCGCTGTC 57.075 47.619 7.64 5.24 0.00 3.51
2685 3025 4.100189 AGTTTCTATTATCTGAGGCGCTGT 59.900 41.667 7.64 0.00 0.00 4.40
2713 3076 5.966636 TGCTAATAATCTGTGCAGTTACG 57.033 39.130 0.00 0.00 0.00 3.18
2769 3134 2.173519 CCCAGGATTGCAGTGTGATTT 58.826 47.619 0.00 0.00 0.00 2.17
2777 3142 3.135348 TCAGAAGTATCCCAGGATTGCAG 59.865 47.826 4.13 0.00 36.17 4.41
2792 3157 3.429547 CCGGAGATGATTTCGTCAGAAGT 60.430 47.826 0.00 0.00 40.92 3.01
2793 3158 3.119291 CCGGAGATGATTTCGTCAGAAG 58.881 50.000 0.00 0.00 40.92 2.85
2835 3210 7.687941 AACAAGGACATGGTTTTACATCTAG 57.312 36.000 0.00 0.00 0.00 2.43
2836 3211 9.747898 ATAAACAAGGACATGGTTTTACATCTA 57.252 29.630 0.00 0.00 36.29 1.98
2846 3221 4.998051 AGTGGAATAAACAAGGACATGGT 58.002 39.130 0.00 0.00 0.00 3.55
2847 3222 5.124457 CAGAGTGGAATAAACAAGGACATGG 59.876 44.000 0.00 0.00 0.00 3.66
2877 3252 1.550976 GTCAGAATCGTCCCAGGTTCT 59.449 52.381 0.00 0.00 0.00 3.01
2888 3263 3.536158 TTTGCCTTTTCGTCAGAATCG 57.464 42.857 0.00 0.00 36.09 3.34
2906 3281 5.043248 CCTGTCTGCGTTCATTTTCTTTTT 58.957 37.500 0.00 0.00 0.00 1.94
3006 3423 3.243941 ACAACGAGCACCACTTACATGTA 60.244 43.478 0.08 0.08 0.00 2.29
3079 3512 2.583024 TTGGCATTGGAGTGACATGA 57.417 45.000 0.00 0.00 36.90 3.07
3108 3541 0.187117 TTGTGTTCCTCCATTGCCCA 59.813 50.000 0.00 0.00 0.00 5.36
3109 3542 1.000843 GTTTGTGTTCCTCCATTGCCC 59.999 52.381 0.00 0.00 0.00 5.36
3111 3544 3.665745 ATGTTTGTGTTCCTCCATTGC 57.334 42.857 0.00 0.00 0.00 3.56
3112 3545 6.511416 TGTTTATGTTTGTGTTCCTCCATTG 58.489 36.000 0.00 0.00 0.00 2.82
3122 3555 7.107639 AGCCTACTTTTGTTTATGTTTGTGT 57.892 32.000 0.00 0.00 0.00 3.72
3132 3565 7.320399 GGCACAATAATAGCCTACTTTTGTTT 58.680 34.615 0.00 0.00 44.92 2.83
3134 3567 6.451064 GGCACAATAATAGCCTACTTTTGT 57.549 37.500 0.00 0.00 44.92 2.83
3314 3747 6.000891 TCATGCTATGTTTGTTCTGTGAAC 57.999 37.500 3.74 3.74 0.00 3.18
3332 3766 6.444633 AGTCATTTGCTTATTATGCTCATGC 58.555 36.000 3.56 0.00 40.20 4.06
3478 3913 9.337396 ACATTCAATAGTTGTTAACAGTCAAGA 57.663 29.630 8.56 2.02 0.00 3.02
3569 4280 7.572523 AAACTGTGATAACATCATGTATGGG 57.427 36.000 0.00 0.00 42.04 4.00
3658 4369 7.385752 CCAGTATGAACAATTGCAAATCTTTGT 59.614 33.333 1.71 6.79 39.69 2.83
3659 4370 7.622672 GCCAGTATGAACAATTGCAAATCTTTG 60.623 37.037 1.71 6.06 39.69 2.77
3661 4372 5.870978 GCCAGTATGAACAATTGCAAATCTT 59.129 36.000 1.71 1.34 39.69 2.40
3677 4388 1.093972 TTGCCGTGATTGCCAGTATG 58.906 50.000 0.00 0.00 0.00 2.39
3692 4403 6.138088 GCATTTCACATTCTTTTCTTTTGCC 58.862 36.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.