Multiple sequence alignment - TraesCS2A01G066900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G066900 chr2A 100.000 3145 0 0 1 3145 30073776 30070632 0.000000e+00 5808.0
1 TraesCS2A01G066900 chr2A 88.270 1023 69 22 1333 2354 30048630 30047658 0.000000e+00 1177.0
2 TraesCS2A01G066900 chr2A 87.454 813 48 20 1474 2284 30021219 30020459 0.000000e+00 887.0
3 TraesCS2A01G066900 chr2A 86.326 724 59 16 552 1243 30021986 30021271 0.000000e+00 752.0
4 TraesCS2A01G066900 chr2A 83.711 485 52 13 811 1279 30049333 30048860 1.730000e-117 433.0
5 TraesCS2A01G066900 chr2A 80.645 372 53 12 2356 2722 600419248 600419605 1.440000e-68 270.0
6 TraesCS2A01G066900 chr2A 79.257 323 33 9 2740 3058 30017344 30017052 8.900000e-46 195.0
7 TraesCS2A01G066900 chr2A 76.796 362 60 17 2377 2730 195314325 195313980 6.930000e-42 182.0
8 TraesCS2A01G066900 chr2A 75.261 287 39 18 2371 2639 118448241 118447969 1.190000e-19 108.0
9 TraesCS2A01G066900 chr2A 88.158 76 7 2 2888 2962 749834989 749835063 4.320000e-14 89.8
10 TraesCS2A01G066900 chr2A 97.826 46 1 0 427 472 369501472 369501517 2.600000e-11 80.5
11 TraesCS2A01G066900 chr2D 92.458 2824 139 27 334 3145 27884891 27882130 0.000000e+00 3967.0
12 TraesCS2A01G066900 chr2D 87.793 1024 72 20 1333 2354 27860486 27859514 0.000000e+00 1149.0
13 TraesCS2A01G066900 chr2D 87.331 813 49 24 1474 2284 27853945 27853185 0.000000e+00 881.0
14 TraesCS2A01G066900 chr2D 87.083 720 55 14 552 1236 27854720 27854004 0.000000e+00 780.0
15 TraesCS2A01G066900 chr2D 79.675 984 123 32 1376 2354 27850977 27850066 3.420000e-179 638.0
16 TraesCS2A01G066900 chr2D 96.622 296 10 0 1 296 27885174 27884879 2.820000e-135 492.0
17 TraesCS2A01G066900 chr2D 82.540 504 57 17 797 1283 27861203 27860714 6.280000e-112 414.0
18 TraesCS2A01G066900 chr2D 80.878 319 36 7 2740 3058 27850075 27849782 8.780000e-56 228.0
19 TraesCS2A01G066900 chr2D 81.143 175 26 6 2354 2526 586398747 586398578 1.970000e-27 134.0
20 TraesCS2A01G066900 chr2D 74.468 376 60 27 2354 2721 364981888 364982235 2.550000e-26 130.0
21 TraesCS2A01G066900 chr2D 95.588 68 2 1 2740 2807 27859523 27859457 1.190000e-19 108.0
22 TraesCS2A01G066900 chr2D 92.537 67 5 0 2741 2807 27853097 27853031 2.580000e-16 97.1
23 TraesCS2A01G066900 chr2D 77.160 162 32 5 2897 3056 306001491 306001333 4.320000e-14 89.8
24 TraesCS2A01G066900 chr2D 94.643 56 1 1 427 480 228434214 228434159 5.590000e-13 86.1
25 TraesCS2A01G066900 chr2D 95.556 45 2 0 426 470 351367664 351367620 4.350000e-09 73.1
26 TraesCS2A01G066900 chr2B 95.017 1204 53 7 853 2053 44311840 44310641 0.000000e+00 1884.0
27 TraesCS2A01G066900 chr2B 87.267 1021 74 20 1333 2350 44286476 44285509 0.000000e+00 1114.0
28 TraesCS2A01G066900 chr2B 87.483 727 50 14 552 1243 44192496 44191776 0.000000e+00 800.0
29 TraesCS2A01G066900 chr2B 87.483 727 50 14 552 1243 44275176 44274456 0.000000e+00 800.0
30 TraesCS2A01G066900 chr2B 94.351 478 19 7 1474 1949 44274404 44273933 0.000000e+00 726.0
31 TraesCS2A01G066900 chr2B 93.933 478 21 7 1474 1949 44191724 44191253 0.000000e+00 715.0
32 TraesCS2A01G066900 chr2B 86.871 457 37 6 2086 2534 44306920 44306479 1.010000e-134 490.0
33 TraesCS2A01G066900 chr2B 87.443 438 34 6 2711 3145 44306481 44306062 4.720000e-133 484.0
34 TraesCS2A01G066900 chr2B 83.065 496 52 18 801 1279 44287186 44286706 3.750000e-114 422.0
35 TraesCS2A01G066900 chr2B 82.533 229 29 9 552 773 44312060 44311836 1.150000e-44 191.0
36 TraesCS2A01G066900 chr2B 92.000 125 9 1 2159 2282 44272491 44272367 1.160000e-39 174.0
37 TraesCS2A01G066900 chr2B 92.174 115 8 1 2740 2854 44188313 44188200 9.030000e-36 161.0
38 TraesCS2A01G066900 chr2B 95.588 68 2 1 2740 2807 44285514 44285448 1.190000e-19 108.0
39 TraesCS2A01G066900 chr2B 79.851 134 16 8 2606 2730 84974885 84974754 1.550000e-13 87.9
40 TraesCS2A01G066900 chr2B 94.340 53 2 1 419 470 87846924 87846872 2.600000e-11 80.5
41 TraesCS2A01G066900 chr5A 83.251 203 23 7 2444 2641 614357755 614357559 3.220000e-40 176.0
42 TraesCS2A01G066900 chr5A 87.619 105 12 1 2422 2526 368170314 368170211 1.530000e-23 121.0
43 TraesCS2A01G066900 chr5A 89.655 58 6 0 2357 2414 607690179 607690236 1.210000e-09 75.0
44 TraesCS2A01G066900 chr1D 82.673 202 25 5 2442 2641 378288712 378288519 1.500000e-38 171.0
45 TraesCS2A01G066900 chr1D 76.552 290 30 18 2371 2641 66690263 66689993 1.180000e-24 124.0
46 TraesCS2A01G066900 chr4B 75.637 353 58 22 2380 2724 645313101 645313433 1.950000e-32 150.0
47 TraesCS2A01G066900 chr4B 74.300 393 61 25 2371 2746 552666793 552666424 2.550000e-26 130.0
48 TraesCS2A01G066900 chr5D 81.006 179 28 6 2355 2530 61483350 61483525 1.520000e-28 137.0
49 TraesCS2A01G066900 chr5D 78.818 203 30 10 2444 2641 260486004 260486198 1.180000e-24 124.0
50 TraesCS2A01G066900 chr5D 74.194 341 59 16 2422 2738 532245301 532245636 7.130000e-22 115.0
51 TraesCS2A01G066900 chr3D 74.074 378 64 17 2362 2724 511280864 511281222 1.180000e-24 124.0
52 TraesCS2A01G066900 chr3B 80.625 160 27 4 2368 2525 437507143 437507300 1.530000e-23 121.0
53 TraesCS2A01G066900 chr3B 88.000 75 9 0 2888 2962 615359385 615359311 4.320000e-14 89.8
54 TraesCS2A01G066900 chr3B 83.908 87 9 3 2681 2763 651256329 651256244 9.350000e-11 78.7
55 TraesCS2A01G066900 chr3B 78.788 99 21 0 171 269 594823430 594823332 2.020000e-07 67.6
56 TraesCS2A01G066900 chr7B 77.561 205 35 9 2442 2639 523236743 523236543 2.560000e-21 113.0
57 TraesCS2A01G066900 chr5B 80.556 144 23 4 2888 3029 569404248 569404108 4.290000e-19 106.0
58 TraesCS2A01G066900 chr6A 77.647 170 35 2 2879 3047 41848429 41848596 2.000000e-17 100.0
59 TraesCS2A01G066900 chr1B 78.261 161 31 3 2888 3047 580298885 580298728 2.000000e-17 100.0
60 TraesCS2A01G066900 chr6B 74.627 268 42 18 2386 2641 680771305 680771558 9.290000e-16 95.3
61 TraesCS2A01G066900 chr7A 77.381 168 27 7 2566 2730 727541408 727541249 4.320000e-14 89.8
62 TraesCS2A01G066900 chr1A 97.959 49 1 0 432 480 474227507 474227555 5.590000e-13 86.1
63 TraesCS2A01G066900 chr4D 94.340 53 2 1 418 470 6688414 6688465 2.600000e-11 80.5
64 TraesCS2A01G066900 chr3A 92.308 52 4 0 420 471 194703875 194703926 1.210000e-09 75.0
65 TraesCS2A01G066900 chr4A 89.474 57 5 1 414 470 511040474 511040529 1.560000e-08 71.3
66 TraesCS2A01G066900 chrUn 78.846 104 17 4 2368 2467 79974282 79974384 7.280000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G066900 chr2A 30070632 30073776 3144 True 5808.000000 5808 100.000000 1 3145 1 chr2A.!!$R1 3144
1 TraesCS2A01G066900 chr2A 30047658 30049333 1675 True 805.000000 1177 85.990500 811 2354 2 chr2A.!!$R5 1543
2 TraesCS2A01G066900 chr2A 30017052 30021986 4934 True 611.333333 887 84.345667 552 3058 3 chr2A.!!$R4 2506
3 TraesCS2A01G066900 chr2D 27882130 27885174 3044 True 2229.500000 3967 94.540000 1 3145 2 chr2D.!!$R7 3144
4 TraesCS2A01G066900 chr2D 27859457 27861203 1746 True 557.000000 1149 88.640333 797 2807 3 chr2D.!!$R6 2010
5 TraesCS2A01G066900 chr2D 27849782 27854720 4938 True 524.820000 881 85.500800 552 3058 5 chr2D.!!$R5 2506
6 TraesCS2A01G066900 chr2B 44306062 44312060 5998 True 762.250000 1884 87.966000 552 3145 4 chr2B.!!$R6 2593
7 TraesCS2A01G066900 chr2B 44272367 44275176 2809 True 566.666667 800 91.278000 552 2282 3 chr2B.!!$R4 1730
8 TraesCS2A01G066900 chr2B 44188200 44192496 4296 True 558.666667 800 91.196667 552 2854 3 chr2B.!!$R3 2302
9 TraesCS2A01G066900 chr2B 44285448 44287186 1738 True 548.000000 1114 88.640000 801 2807 3 chr2B.!!$R5 2006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.030369 CGGGAAGGAATCTACGTCGG 59.970 60.0 0.00 0.0 0.00 4.79 F
318 319 0.545171 TCTACGTCGGACCTCCATCT 59.455 55.0 1.91 0.0 35.14 2.90 F
1210 1259 0.683828 CATGCAGGTATGTTGGGGCA 60.684 55.0 0.00 0.0 35.54 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2191 0.104855 AAGCAGAGTCGTGCAACAGA 59.895 50.0 14.37 0.0 46.6 3.41 R
1939 2194 0.235926 GGAAAGCAGAGTCGTGCAAC 59.764 55.0 14.37 0.0 46.6 4.17 R
2944 12733 0.326927 ATTAAGTGGGGGTGTGTCCG 59.673 55.0 0.00 0.0 37.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.970484 AGCACCTCAAACATAGTAAAAAGTG 58.030 36.000 0.00 0.00 0.00 3.16
129 130 0.814010 ACGAGCCGTTGTCTTTGCTT 60.814 50.000 0.00 0.00 36.35 3.91
137 138 2.869801 CGTTGTCTTTGCTTCCACACTA 59.130 45.455 0.00 0.00 0.00 2.74
139 140 4.127171 GTTGTCTTTGCTTCCACACTAGA 58.873 43.478 0.00 0.00 0.00 2.43
246 247 2.621998 GTCGAATCCCTGAATCGGTCTA 59.378 50.000 2.14 0.00 35.90 2.59
289 290 0.819259 TTTGCATATGCCCGAGGAGC 60.819 55.000 24.54 0.00 41.18 4.70
290 291 2.740055 GCATATGCCCGAGGAGCG 60.740 66.667 17.26 0.00 40.47 5.03
299 300 3.221222 CGAGGAGCGGGAAGGAAT 58.779 61.111 0.00 0.00 36.03 3.01
300 301 1.068250 CGAGGAGCGGGAAGGAATC 59.932 63.158 0.00 0.00 36.03 2.52
301 302 1.395826 CGAGGAGCGGGAAGGAATCT 61.396 60.000 0.00 0.00 36.03 2.40
302 303 1.705873 GAGGAGCGGGAAGGAATCTA 58.294 55.000 0.00 0.00 0.00 1.98
303 304 1.341852 GAGGAGCGGGAAGGAATCTAC 59.658 57.143 0.00 0.00 0.00 2.59
304 305 0.032267 GGAGCGGGAAGGAATCTACG 59.968 60.000 0.00 0.00 0.00 3.51
305 306 0.745468 GAGCGGGAAGGAATCTACGT 59.255 55.000 0.00 0.00 33.18 3.57
306 307 0.745468 AGCGGGAAGGAATCTACGTC 59.255 55.000 0.00 0.00 33.18 4.34
307 308 0.594284 GCGGGAAGGAATCTACGTCG 60.594 60.000 0.00 0.00 33.18 5.12
308 309 0.030369 CGGGAAGGAATCTACGTCGG 59.970 60.000 0.00 0.00 0.00 4.79
309 310 1.396653 GGGAAGGAATCTACGTCGGA 58.603 55.000 0.00 0.00 0.00 4.55
310 311 1.066757 GGGAAGGAATCTACGTCGGAC 59.933 57.143 0.00 0.00 0.00 4.79
311 312 1.066757 GGAAGGAATCTACGTCGGACC 59.933 57.143 1.91 0.00 0.00 4.46
312 313 2.022934 GAAGGAATCTACGTCGGACCT 58.977 52.381 1.91 0.00 0.00 3.85
313 314 1.677942 AGGAATCTACGTCGGACCTC 58.322 55.000 1.91 0.00 0.00 3.85
314 315 0.667453 GGAATCTACGTCGGACCTCC 59.333 60.000 1.91 0.00 0.00 4.30
315 316 1.386533 GAATCTACGTCGGACCTCCA 58.613 55.000 1.91 0.00 35.14 3.86
316 317 1.955080 GAATCTACGTCGGACCTCCAT 59.045 52.381 1.91 0.00 35.14 3.41
317 318 1.606903 ATCTACGTCGGACCTCCATC 58.393 55.000 1.91 0.00 35.14 3.51
318 319 0.545171 TCTACGTCGGACCTCCATCT 59.455 55.000 1.91 0.00 35.14 2.90
319 320 1.764723 TCTACGTCGGACCTCCATCTA 59.235 52.381 1.91 0.00 35.14 1.98
320 321 2.171237 TCTACGTCGGACCTCCATCTAA 59.829 50.000 1.91 0.00 35.14 2.10
321 322 2.068834 ACGTCGGACCTCCATCTAAT 57.931 50.000 1.91 0.00 35.14 1.73
322 323 1.955080 ACGTCGGACCTCCATCTAATC 59.045 52.381 1.91 0.00 35.14 1.75
323 324 1.269998 CGTCGGACCTCCATCTAATCC 59.730 57.143 1.91 0.00 35.14 3.01
325 326 1.329256 CGGACCTCCATCTAATCCGT 58.671 55.000 2.85 0.00 45.73 4.69
326 327 1.269998 CGGACCTCCATCTAATCCGTC 59.730 57.143 2.85 0.00 45.73 4.79
327 328 2.599677 GGACCTCCATCTAATCCGTCT 58.400 52.381 0.00 0.00 35.64 4.18
328 329 3.764218 GGACCTCCATCTAATCCGTCTA 58.236 50.000 0.00 0.00 35.64 2.59
329 330 3.759618 GGACCTCCATCTAATCCGTCTAG 59.240 52.174 0.00 0.00 35.64 2.43
330 331 4.506979 GGACCTCCATCTAATCCGTCTAGA 60.507 50.000 0.00 0.00 35.64 2.43
331 332 4.400120 ACCTCCATCTAATCCGTCTAGAC 58.600 47.826 13.18 13.18 0.00 2.59
332 333 4.141228 ACCTCCATCTAATCCGTCTAGACA 60.141 45.833 22.37 4.49 0.00 3.41
333 334 4.457603 CCTCCATCTAATCCGTCTAGACAG 59.542 50.000 22.37 11.73 0.00 3.51
334 335 5.306114 TCCATCTAATCCGTCTAGACAGA 57.694 43.478 22.37 16.93 0.00 3.41
335 336 5.309638 TCCATCTAATCCGTCTAGACAGAG 58.690 45.833 22.37 10.49 0.00 3.35
336 337 4.457603 CCATCTAATCCGTCTAGACAGAGG 59.542 50.000 22.37 16.76 36.60 3.69
337 338 5.309638 CATCTAATCCGTCTAGACAGAGGA 58.690 45.833 22.37 19.54 38.67 3.71
338 339 5.369409 TCTAATCCGTCTAGACAGAGGAA 57.631 43.478 22.37 6.60 38.67 3.36
372 373 1.762957 GGATCCCGGAAGATTGACTCA 59.237 52.381 0.73 0.00 0.00 3.41
375 376 3.780804 TCCCGGAAGATTGACTCAAAA 57.219 42.857 0.73 0.00 0.00 2.44
412 413 2.509336 CCAAGCGCCACTCCTACG 60.509 66.667 2.29 0.00 0.00 3.51
428 429 7.014422 CCACTCCTACGAGAACTAAAATCCTAT 59.986 40.741 0.00 0.00 38.52 2.57
441 442 8.042286 ACTAAAATCCTATTCCCTCCGTAAAT 57.958 34.615 0.00 0.00 0.00 1.40
667 668 2.292267 CACCCTCTATGATTGCACACC 58.708 52.381 0.00 0.00 0.00 4.16
753 759 0.971386 ATTTTGCCCAGCCAACTCAG 59.029 50.000 0.00 0.00 0.00 3.35
764 775 0.803768 CCAACTCAGTCGCATCCTCG 60.804 60.000 0.00 0.00 0.00 4.63
944 970 2.434884 CCAGCGAACGTGAGCCAT 60.435 61.111 11.26 0.00 0.00 4.40
1047 1087 3.656264 TCCTCCTCTCCTCCGATAATACA 59.344 47.826 0.00 0.00 0.00 2.29
1204 1247 1.004628 TCAGGTGCATGCAGGTATGTT 59.995 47.619 23.41 0.00 0.00 2.71
1209 1258 2.019897 GCATGCAGGTATGTTGGGGC 62.020 60.000 14.21 0.00 0.00 5.80
1210 1259 0.683828 CATGCAGGTATGTTGGGGCA 60.684 55.000 0.00 0.00 35.54 5.36
1211 1260 0.684153 ATGCAGGTATGTTGGGGCAC 60.684 55.000 0.00 0.00 33.67 5.01
1212 1261 1.000896 GCAGGTATGTTGGGGCACT 60.001 57.895 0.00 0.00 0.00 4.40
1214 1263 1.340600 GCAGGTATGTTGGGGCACTAA 60.341 52.381 0.00 0.00 0.00 2.24
1215 1264 2.686715 GCAGGTATGTTGGGGCACTAAT 60.687 50.000 0.00 0.00 0.00 1.73
1216 1265 3.631250 CAGGTATGTTGGGGCACTAATT 58.369 45.455 0.00 0.00 0.00 1.40
1217 1266 4.787551 CAGGTATGTTGGGGCACTAATTA 58.212 43.478 0.00 0.00 0.00 1.40
1218 1267 5.197451 CAGGTATGTTGGGGCACTAATTAA 58.803 41.667 0.00 0.00 0.00 1.40
1219 1268 5.654650 CAGGTATGTTGGGGCACTAATTAAA 59.345 40.000 0.00 0.00 0.00 1.52
1220 1269 5.655090 AGGTATGTTGGGGCACTAATTAAAC 59.345 40.000 0.00 0.00 0.00 2.01
1226 1280 6.376018 TGTTGGGGCACTAATTAAACTGATAC 59.624 38.462 0.00 0.00 0.00 2.24
1896 2138 4.922206 AGTTGAAACAATGGCCTATCTCA 58.078 39.130 3.32 0.00 0.00 3.27
1904 2146 6.692849 ACAATGGCCTATCTCATATGAAGA 57.307 37.500 3.32 7.05 0.00 2.87
1935 2190 3.982576 ATTTCACTTTTGTCCACGACC 57.017 42.857 0.00 0.00 0.00 4.79
1936 2191 2.702592 TTCACTTTTGTCCACGACCT 57.297 45.000 0.00 0.00 0.00 3.85
1937 2192 2.234300 TCACTTTTGTCCACGACCTC 57.766 50.000 0.00 0.00 0.00 3.85
1938 2193 1.760613 TCACTTTTGTCCACGACCTCT 59.239 47.619 0.00 0.00 0.00 3.69
1939 2194 1.867233 CACTTTTGTCCACGACCTCTG 59.133 52.381 0.00 0.00 0.00 3.35
1940 2195 1.485066 ACTTTTGTCCACGACCTCTGT 59.515 47.619 0.00 0.00 0.00 3.41
1941 2196 2.093128 ACTTTTGTCCACGACCTCTGTT 60.093 45.455 0.00 0.00 0.00 3.16
1942 2197 1.948104 TTTGTCCACGACCTCTGTTG 58.052 50.000 0.00 0.00 0.00 3.33
1943 2198 0.531974 TTGTCCACGACCTCTGTTGC 60.532 55.000 0.00 0.00 0.00 4.17
1944 2199 1.069090 GTCCACGACCTCTGTTGCA 59.931 57.895 0.00 0.00 0.00 4.08
1945 2200 1.069090 TCCACGACCTCTGTTGCAC 59.931 57.895 0.00 0.00 0.00 4.57
1946 2201 2.310233 CCACGACCTCTGTTGCACG 61.310 63.158 0.00 0.00 0.00 5.34
1947 2202 1.299850 CACGACCTCTGTTGCACGA 60.300 57.895 0.00 0.00 0.00 4.35
1948 2203 1.299926 ACGACCTCTGTTGCACGAC 60.300 57.895 0.00 0.00 0.00 4.34
2009 2278 8.677148 ATGATTTGTGTATGTATGTAGGAACC 57.323 34.615 0.00 0.00 0.00 3.62
2012 2281 9.998106 GATTTGTGTATGTATGTAGGAACCTAT 57.002 33.333 3.81 0.00 0.00 2.57
2031 2300 2.671130 TGTTCTCGAGCATGCATACA 57.329 45.000 21.98 10.92 0.00 2.29
2063 4710 6.907961 TCATAGGTCTATATACACCGGCTAT 58.092 40.000 0.00 0.00 37.79 2.97
2064 4711 6.996879 TCATAGGTCTATATACACCGGCTATC 59.003 42.308 0.00 0.00 37.79 2.08
2090 6459 9.033481 CCATATGCAAAACCTGTGTAATATTTG 57.967 33.333 0.00 0.00 0.00 2.32
2133 6503 8.353423 ACCATTGTCTTGCTGTTATTAATTCT 57.647 30.769 0.00 0.00 0.00 2.40
2134 6504 8.806146 ACCATTGTCTTGCTGTTATTAATTCTT 58.194 29.630 0.00 0.00 0.00 2.52
2135 6505 9.643693 CCATTGTCTTGCTGTTATTAATTCTTT 57.356 29.630 0.00 0.00 0.00 2.52
2186 6557 1.034356 TGGCACTGCAATGGATATGC 58.966 50.000 2.82 3.15 44.08 3.14
2307 9321 7.228706 AGTCTTATTGTTTCTTTTCCACGTCAT 59.771 33.333 0.00 0.00 0.00 3.06
2350 9367 8.831550 GGTTTTTGCTAGTAGAATAGGATGAAG 58.168 37.037 0.00 0.00 0.00 3.02
2360 9377 4.164796 AGAATAGGATGAAGCATGGACACA 59.835 41.667 0.00 0.00 0.00 3.72
2416 9602 9.072294 CGGGTGAACAATAAAATCTGAAAATAC 57.928 33.333 0.00 0.00 0.00 1.89
2500 9691 6.552859 TTGCAAAGTTTCATCATAGAACGA 57.447 33.333 0.00 0.00 0.00 3.85
2506 9697 6.575083 AGTTTCATCATAGAACGACATTCG 57.425 37.500 0.00 0.00 46.93 3.34
2711 11590 5.061560 CAGATTTTACTGTTCACTCGAGCTC 59.938 44.000 13.61 2.73 33.73 4.09
2713 11592 4.521130 TTTACTGTTCACTCGAGCTCAT 57.479 40.909 13.61 0.00 0.00 2.90
2714 11593 5.638596 TTTACTGTTCACTCGAGCTCATA 57.361 39.130 13.61 0.00 0.00 2.15
2715 11594 5.836821 TTACTGTTCACTCGAGCTCATAT 57.163 39.130 13.61 0.00 0.00 1.78
2717 11596 3.696548 ACTGTTCACTCGAGCTCATATGA 59.303 43.478 13.61 10.42 0.00 2.15
2718 11597 4.202000 ACTGTTCACTCGAGCTCATATGAG 60.202 45.833 25.64 25.64 44.75 2.90
2841 12630 8.893219 CATGAGCTTCATGTTTTATACTAGGA 57.107 34.615 14.42 0.00 46.80 2.94
2855 12644 9.953565 TTTTATACTAGGATGGGGAATTTATCG 57.046 33.333 0.00 0.00 0.00 2.92
2856 12645 8.674925 TTATACTAGGATGGGGAATTTATCGT 57.325 34.615 0.00 0.00 0.00 3.73
2857 12646 5.228945 ACTAGGATGGGGAATTTATCGTG 57.771 43.478 0.00 0.00 0.00 4.35
2858 12647 4.658901 ACTAGGATGGGGAATTTATCGTGT 59.341 41.667 0.00 0.00 0.00 4.49
2859 12648 4.519906 AGGATGGGGAATTTATCGTGTT 57.480 40.909 0.00 0.00 0.00 3.32
2860 12649 4.867086 AGGATGGGGAATTTATCGTGTTT 58.133 39.130 0.00 0.00 0.00 2.83
2861 12650 5.269189 AGGATGGGGAATTTATCGTGTTTT 58.731 37.500 0.00 0.00 0.00 2.43
2862 12651 6.428295 AGGATGGGGAATTTATCGTGTTTTA 58.572 36.000 0.00 0.00 0.00 1.52
2863 12652 7.066781 AGGATGGGGAATTTATCGTGTTTTAT 58.933 34.615 0.00 0.00 0.00 1.40
2864 12653 8.221944 AGGATGGGGAATTTATCGTGTTTTATA 58.778 33.333 0.00 0.00 0.00 0.98
2865 12654 8.294577 GGATGGGGAATTTATCGTGTTTTATAC 58.705 37.037 0.00 0.00 0.00 1.47
2866 12655 8.990163 ATGGGGAATTTATCGTGTTTTATACT 57.010 30.769 0.00 0.00 0.00 2.12
2867 12656 8.810990 TGGGGAATTTATCGTGTTTTATACTT 57.189 30.769 0.00 0.00 0.00 2.24
2868 12657 9.245481 TGGGGAATTTATCGTGTTTTATACTTT 57.755 29.630 0.00 0.00 0.00 2.66
2869 12658 9.511144 GGGGAATTTATCGTGTTTTATACTTTG 57.489 33.333 0.00 0.00 0.00 2.77
2936 12725 0.529555 GCTCGAGGTCTTCATGAGCC 60.530 60.000 15.58 0.10 44.76 4.70
2944 12733 2.485814 GGTCTTCATGAGCCAACAAGTC 59.514 50.000 0.00 0.00 37.22 3.01
3069 12862 2.338620 GCCTTCCCGTTTGGTTGC 59.661 61.111 0.00 0.00 34.77 4.17
3103 12896 0.897863 AAGGCCGGTTAATGCAAGCA 60.898 50.000 1.90 0.00 34.13 3.91
3106 12899 1.269051 GGCCGGTTAATGCAAGCATAC 60.269 52.381 8.12 3.78 35.31 2.39
3120 12913 1.917273 GCATACGCTAAACAGGTCGA 58.083 50.000 0.00 0.00 34.30 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.369209 GTCGTTCGGTGTCGTTCGA 60.369 57.895 0.00 0.00 38.87 3.71
129 130 3.556999 GTCTGGCTAGATCTAGTGTGGA 58.443 50.000 26.73 17.63 34.94 4.02
137 138 2.028130 CGACAAGGTCTGGCTAGATCT 58.972 52.381 7.11 7.11 46.37 2.75
139 140 2.145397 TCGACAAGGTCTGGCTAGAT 57.855 50.000 2.00 0.00 34.94 1.98
219 220 3.058155 CGATTCAGGGATTCGACGACTAT 60.058 47.826 0.00 0.00 37.54 2.12
221 222 1.065701 CGATTCAGGGATTCGACGACT 59.934 52.381 0.00 0.00 37.54 4.18
246 247 3.815401 CGAGATTTGGTGTCAGGTTCTTT 59.185 43.478 0.00 0.00 0.00 2.52
289 290 0.030369 CCGACGTAGATTCCTTCCCG 59.970 60.000 0.00 0.00 0.00 5.14
290 291 1.066757 GTCCGACGTAGATTCCTTCCC 59.933 57.143 0.00 0.00 0.00 3.97
291 292 1.066757 GGTCCGACGTAGATTCCTTCC 59.933 57.143 0.00 0.00 0.00 3.46
292 293 2.022934 AGGTCCGACGTAGATTCCTTC 58.977 52.381 0.00 0.00 0.00 3.46
293 294 2.022934 GAGGTCCGACGTAGATTCCTT 58.977 52.381 0.00 0.00 0.00 3.36
294 295 1.677942 GAGGTCCGACGTAGATTCCT 58.322 55.000 0.00 1.79 0.00 3.36
295 296 0.667453 GGAGGTCCGACGTAGATTCC 59.333 60.000 0.00 2.08 0.00 3.01
296 297 1.386533 TGGAGGTCCGACGTAGATTC 58.613 55.000 0.00 0.00 39.43 2.52
297 298 1.955080 GATGGAGGTCCGACGTAGATT 59.045 52.381 0.00 0.00 39.43 2.40
298 299 1.143277 AGATGGAGGTCCGACGTAGAT 59.857 52.381 0.00 0.00 39.43 1.98
299 300 0.545171 AGATGGAGGTCCGACGTAGA 59.455 55.000 0.00 0.00 39.43 2.59
300 301 2.251409 TAGATGGAGGTCCGACGTAG 57.749 55.000 0.00 0.00 39.43 3.51
301 302 2.715749 TTAGATGGAGGTCCGACGTA 57.284 50.000 0.00 0.00 39.43 3.57
302 303 1.955080 GATTAGATGGAGGTCCGACGT 59.045 52.381 0.00 0.00 39.43 4.34
303 304 1.269998 GGATTAGATGGAGGTCCGACG 59.730 57.143 0.00 0.00 39.43 5.12
307 308 2.599677 AGACGGATTAGATGGAGGTCC 58.400 52.381 0.00 0.00 0.00 4.46
308 309 4.456566 GTCTAGACGGATTAGATGGAGGTC 59.543 50.000 7.22 0.00 30.45 3.85
309 310 4.141228 TGTCTAGACGGATTAGATGGAGGT 60.141 45.833 17.85 0.00 30.45 3.85
310 311 4.399219 TGTCTAGACGGATTAGATGGAGG 58.601 47.826 17.85 0.00 30.45 4.30
311 312 5.309638 TCTGTCTAGACGGATTAGATGGAG 58.690 45.833 27.20 10.54 41.45 3.86
312 313 5.306114 TCTGTCTAGACGGATTAGATGGA 57.694 43.478 27.20 5.20 41.45 3.41
313 314 4.457603 CCTCTGTCTAGACGGATTAGATGG 59.542 50.000 30.07 22.83 44.87 3.51
314 315 5.309638 TCCTCTGTCTAGACGGATTAGATG 58.690 45.833 30.07 18.72 44.87 2.90
315 316 5.570205 TCCTCTGTCTAGACGGATTAGAT 57.430 43.478 30.07 0.00 44.87 1.98
316 317 5.104444 AGTTCCTCTGTCTAGACGGATTAGA 60.104 44.000 30.07 23.47 44.87 2.10
317 318 5.127491 AGTTCCTCTGTCTAGACGGATTAG 58.873 45.833 30.07 21.93 44.87 1.73
318 319 5.113446 AGTTCCTCTGTCTAGACGGATTA 57.887 43.478 30.07 19.73 44.87 1.75
319 320 3.970842 AGTTCCTCTGTCTAGACGGATT 58.029 45.455 30.07 13.57 44.87 3.01
320 321 3.655615 AGTTCCTCTGTCTAGACGGAT 57.344 47.619 30.07 15.43 44.87 4.18
321 322 3.082548 CAAGTTCCTCTGTCTAGACGGA 58.917 50.000 28.51 28.51 43.88 4.69
322 323 3.082548 TCAAGTTCCTCTGTCTAGACGG 58.917 50.000 23.54 23.54 39.02 4.79
323 324 4.456222 TCTTCAAGTTCCTCTGTCTAGACG 59.544 45.833 17.85 12.43 0.00 4.18
324 325 5.618195 CGTCTTCAAGTTCCTCTGTCTAGAC 60.618 48.000 16.32 16.32 0.00 2.59
325 326 4.456222 CGTCTTCAAGTTCCTCTGTCTAGA 59.544 45.833 0.00 0.00 0.00 2.43
326 327 4.456222 TCGTCTTCAAGTTCCTCTGTCTAG 59.544 45.833 0.00 0.00 0.00 2.43
327 328 4.215827 GTCGTCTTCAAGTTCCTCTGTCTA 59.784 45.833 0.00 0.00 0.00 2.59
328 329 3.004944 GTCGTCTTCAAGTTCCTCTGTCT 59.995 47.826 0.00 0.00 0.00 3.41
329 330 3.310246 GTCGTCTTCAAGTTCCTCTGTC 58.690 50.000 0.00 0.00 0.00 3.51
330 331 2.036089 GGTCGTCTTCAAGTTCCTCTGT 59.964 50.000 0.00 0.00 0.00 3.41
331 332 2.678324 GGTCGTCTTCAAGTTCCTCTG 58.322 52.381 0.00 0.00 0.00 3.35
332 333 1.269998 CGGTCGTCTTCAAGTTCCTCT 59.730 52.381 0.00 0.00 0.00 3.69
333 334 1.669211 CCGGTCGTCTTCAAGTTCCTC 60.669 57.143 0.00 0.00 0.00 3.71
334 335 0.317479 CCGGTCGTCTTCAAGTTCCT 59.683 55.000 0.00 0.00 0.00 3.36
335 336 0.316204 TCCGGTCGTCTTCAAGTTCC 59.684 55.000 0.00 0.00 0.00 3.62
336 337 2.260481 GATCCGGTCGTCTTCAAGTTC 58.740 52.381 0.00 0.00 0.00 3.01
337 338 1.067071 GGATCCGGTCGTCTTCAAGTT 60.067 52.381 0.00 0.00 0.00 2.66
338 339 0.531200 GGATCCGGTCGTCTTCAAGT 59.469 55.000 0.00 0.00 0.00 3.16
375 376 1.379044 CAGATGGCGGCCCTTCTTT 60.379 57.895 17.97 0.00 42.11 2.52
412 413 6.183360 ACGGAGGGAATAGGATTTTAGTTCTC 60.183 42.308 0.00 0.00 0.00 2.87
428 429 9.991906 CACTCTTATATTTATTTACGGAGGGAA 57.008 33.333 0.00 0.00 0.00 3.97
450 451 9.909644 TGTAAAGAAGTAGTGATCTAAACACTC 57.090 33.333 0.00 0.00 45.58 3.51
667 668 3.515630 CTCATAGGCATATAGTGTGCGG 58.484 50.000 0.00 0.00 43.40 5.69
733 738 2.170166 CTGAGTTGGCTGGGCAAAATA 58.830 47.619 11.01 0.74 0.00 1.40
744 750 1.078848 AGGATGCGACTGAGTTGGC 60.079 57.895 1.41 2.33 0.00 4.52
753 759 1.062587 CAAATTGTCCGAGGATGCGAC 59.937 52.381 0.00 0.00 0.00 5.19
764 775 7.084486 GTGAGTTCCTTGATAACAAATTGTCC 58.916 38.462 0.00 0.00 35.49 4.02
944 970 1.735926 TGGTACAGATGTGGTTGGGA 58.264 50.000 0.00 0.00 0.00 4.37
1047 1087 2.123468 GCGGGGGCCATGGTATTT 60.123 61.111 14.67 0.00 0.00 1.40
1204 1247 5.104859 TCGTATCAGTTTAATTAGTGCCCCA 60.105 40.000 0.00 0.00 0.00 4.96
1214 1263 9.268268 TGACAAAGAAACTCGTATCAGTTTAAT 57.732 29.630 0.43 0.00 44.91 1.40
1215 1264 8.651391 TGACAAAGAAACTCGTATCAGTTTAA 57.349 30.769 0.43 0.00 44.91 1.52
1216 1265 7.924412 ACTGACAAAGAAACTCGTATCAGTTTA 59.076 33.333 0.43 0.00 44.91 2.01
1218 1267 6.201044 CACTGACAAAGAAACTCGTATCAGTT 59.799 38.462 0.00 0.00 42.07 3.16
1219 1268 5.692204 CACTGACAAAGAAACTCGTATCAGT 59.308 40.000 0.00 0.00 44.78 3.41
1220 1269 5.388890 GCACTGACAAAGAAACTCGTATCAG 60.389 44.000 0.00 0.00 38.60 2.90
1226 1280 3.063997 ACTTGCACTGACAAAGAAACTCG 59.936 43.478 0.00 0.00 0.00 4.18
1444 1675 4.880120 ACAGATGCTCAATACTTGGTGATG 59.120 41.667 0.00 0.00 0.00 3.07
1468 1699 4.571984 CACACCTGAATGAATAGAATGCGA 59.428 41.667 0.00 0.00 0.00 5.10
1872 2114 4.922206 AGATAGGCCATTGTTTCAACTCA 58.078 39.130 5.01 0.00 0.00 3.41
1916 2158 2.940410 GAGGTCGTGGACAAAAGTGAAA 59.060 45.455 0.00 0.00 33.68 2.69
1935 2190 0.319383 AGCAGAGTCGTGCAACAGAG 60.319 55.000 14.37 0.00 46.60 3.35
1936 2191 0.104855 AAGCAGAGTCGTGCAACAGA 59.895 50.000 14.37 0.00 46.60 3.41
1937 2192 0.940126 AAAGCAGAGTCGTGCAACAG 59.060 50.000 14.37 0.00 46.60 3.16
1938 2193 0.937304 GAAAGCAGAGTCGTGCAACA 59.063 50.000 14.37 0.00 46.60 3.33
1939 2194 0.235926 GGAAAGCAGAGTCGTGCAAC 59.764 55.000 14.37 0.00 46.60 4.17
1940 2195 1.221466 CGGAAAGCAGAGTCGTGCAA 61.221 55.000 14.37 0.00 46.60 4.08
1941 2196 1.664649 CGGAAAGCAGAGTCGTGCA 60.665 57.895 14.37 0.00 46.60 4.57
1942 2197 1.372997 TCGGAAAGCAGAGTCGTGC 60.373 57.895 6.49 6.49 44.35 5.34
1943 2198 1.009389 GGTCGGAAAGCAGAGTCGTG 61.009 60.000 0.00 0.00 0.00 4.35
1944 2199 1.289380 GGTCGGAAAGCAGAGTCGT 59.711 57.895 0.00 0.00 0.00 4.34
1945 2200 1.801913 CGGTCGGAAAGCAGAGTCG 60.802 63.158 0.00 0.00 0.00 4.18
1946 2201 1.446272 CCGGTCGGAAAGCAGAGTC 60.446 63.158 2.83 0.00 37.50 3.36
1947 2202 1.878656 CTCCGGTCGGAAAGCAGAGT 61.879 60.000 13.36 0.00 44.66 3.24
1948 2203 1.153745 CTCCGGTCGGAAAGCAGAG 60.154 63.158 13.36 0.00 44.66 3.35
2009 2278 4.301628 TGTATGCATGCTCGAGAACATAG 58.698 43.478 18.75 7.24 0.00 2.23
2012 2281 2.671130 TGTATGCATGCTCGAGAACA 57.329 45.000 18.75 5.82 0.00 3.18
2053 2322 1.055849 TGCATATGGATAGCCGGTGT 58.944 50.000 1.90 0.00 36.79 4.16
2063 4710 8.532186 AATATTACACAGGTTTTGCATATGGA 57.468 30.769 4.56 0.00 0.00 3.41
2064 4711 9.033481 CAAATATTACACAGGTTTTGCATATGG 57.967 33.333 4.56 0.00 0.00 2.74
2090 6459 3.446799 TGGTCCGCGTGTTGTATATAAC 58.553 45.455 4.92 5.47 0.00 1.89
2145 6515 9.237187 TGCCAAATAAAGAAACTTTTCCTTTTT 57.763 25.926 2.17 0.00 37.92 1.94
2146 6516 8.673711 GTGCCAAATAAAGAAACTTTTCCTTTT 58.326 29.630 2.17 0.00 37.92 2.27
2147 6517 8.046708 AGTGCCAAATAAAGAAACTTTTCCTTT 58.953 29.630 2.17 0.00 37.92 3.11
2148 6518 7.495606 CAGTGCCAAATAAAGAAACTTTTCCTT 59.504 33.333 2.17 0.00 37.92 3.36
2201 6573 9.994432 CTTAATGTCAAATACTGAATTCTCCAC 57.006 33.333 7.05 0.00 35.22 4.02
2202 6574 9.958180 TCTTAATGTCAAATACTGAATTCTCCA 57.042 29.630 7.05 0.00 35.22 3.86
2282 9296 6.721321 TGACGTGGAAAAGAAACAATAAGAC 58.279 36.000 0.00 0.00 0.00 3.01
2284 9298 9.113876 GTAATGACGTGGAAAAGAAACAATAAG 57.886 33.333 0.00 0.00 0.00 1.73
2289 9303 4.882427 TGGTAATGACGTGGAAAAGAAACA 59.118 37.500 0.00 0.00 0.00 2.83
2307 9321 3.737559 AACCAATGGAGCAGATGGTAA 57.262 42.857 6.16 0.00 45.15 2.85
2350 9367 3.064545 GCTCAGTTAATCTGTGTCCATGC 59.935 47.826 0.00 0.00 43.97 4.06
2475 9666 5.284660 CGTTCTATGATGAAACTTTGCAAGC 59.715 40.000 0.00 0.00 0.00 4.01
2500 9691 1.339920 TGCCATGACATCCACGAATGT 60.340 47.619 0.00 0.00 42.49 2.71
2577 10969 0.958822 ATTTGTGAAAGTCGTGGCCC 59.041 50.000 0.00 0.00 0.00 5.80
2578 10970 1.336755 ACATTTGTGAAAGTCGTGGCC 59.663 47.619 0.00 0.00 0.00 5.36
2579 10971 2.032799 TGACATTTGTGAAAGTCGTGGC 59.967 45.455 0.00 0.00 33.83 5.01
2580 10972 3.961477 TGACATTTGTGAAAGTCGTGG 57.039 42.857 0.00 0.00 33.83 4.94
2583 10975 8.726650 TCATTTAATGACATTTGTGAAAGTCG 57.273 30.769 5.89 0.00 33.59 4.18
2686 11565 4.923871 GCTCGAGTGAACAGTAAAATCTGA 59.076 41.667 15.13 0.00 38.63 3.27
2687 11566 4.926238 AGCTCGAGTGAACAGTAAAATCTG 59.074 41.667 15.13 0.00 40.80 2.90
2688 11567 5.140747 AGCTCGAGTGAACAGTAAAATCT 57.859 39.130 15.13 0.00 0.00 2.40
2711 11590 3.505293 TGTCCTCAGATCGAGCTCATATG 59.495 47.826 15.40 13.29 40.78 1.78
2713 11592 2.881513 GTGTCCTCAGATCGAGCTCATA 59.118 50.000 15.40 0.71 40.78 2.15
2714 11593 1.680735 GTGTCCTCAGATCGAGCTCAT 59.319 52.381 15.40 6.45 40.78 2.90
2715 11594 1.098869 GTGTCCTCAGATCGAGCTCA 58.901 55.000 15.40 1.08 40.78 4.26
2717 11596 1.846007 AAGTGTCCTCAGATCGAGCT 58.154 50.000 0.00 0.00 40.78 4.09
2718 11597 2.535331 GAAAGTGTCCTCAGATCGAGC 58.465 52.381 0.00 0.00 40.78 5.03
2719 11598 2.420372 TCGAAAGTGTCCTCAGATCGAG 59.580 50.000 7.37 7.37 41.89 4.04
2720 11599 2.433436 TCGAAAGTGTCCTCAGATCGA 58.567 47.619 0.00 0.00 33.75 3.59
2721 11600 2.921634 TCGAAAGTGTCCTCAGATCG 57.078 50.000 0.00 0.00 0.00 3.69
2722 11601 4.377839 TCATCGAAAGTGTCCTCAGATC 57.622 45.455 0.00 0.00 0.00 2.75
2723 11602 4.808414 TTCATCGAAAGTGTCCTCAGAT 57.192 40.909 0.00 0.00 0.00 2.90
2724 11603 4.202212 TGTTTCATCGAAAGTGTCCTCAGA 60.202 41.667 0.00 0.00 31.87 3.27
2725 11604 4.058124 TGTTTCATCGAAAGTGTCCTCAG 58.942 43.478 0.00 0.00 31.87 3.35
2841 12630 8.990163 AGTATAAAACACGATAAATTCCCCAT 57.010 30.769 0.00 0.00 0.00 4.00
2866 12655 5.983540 ACAGGGAAAGTTTTGCAATACAAA 58.016 33.333 20.04 0.00 46.51 2.83
2867 12656 5.606348 ACAGGGAAAGTTTTGCAATACAA 57.394 34.783 20.04 0.34 36.13 2.41
2868 12657 6.909550 ATACAGGGAAAGTTTTGCAATACA 57.090 33.333 20.04 0.00 0.00 2.29
2869 12658 8.135529 GGATATACAGGGAAAGTTTTGCAATAC 58.864 37.037 11.59 11.59 0.00 1.89
2870 12659 7.286775 GGGATATACAGGGAAAGTTTTGCAATA 59.713 37.037 0.00 0.00 0.00 1.90
2875 12664 5.433526 TCGGGATATACAGGGAAAGTTTTG 58.566 41.667 0.00 0.00 0.00 2.44
2877 12666 5.368523 TCATCGGGATATACAGGGAAAGTTT 59.631 40.000 0.00 0.00 0.00 2.66
2936 12725 1.164041 GGGGTGTGTCCGACTTGTTG 61.164 60.000 0.00 0.00 37.00 3.33
2944 12733 0.326927 ATTAAGTGGGGGTGTGTCCG 59.673 55.000 0.00 0.00 37.00 4.79
3014 12807 1.536284 CGCAAGGAGTAGGAATCGTCC 60.536 57.143 0.00 0.00 45.35 4.79
3016 12809 1.183549 ACGCAAGGAGTAGGAATCGT 58.816 50.000 0.00 0.00 46.39 3.73
3021 12814 3.512329 TGATGTTAACGCAAGGAGTAGGA 59.488 43.478 0.26 0.00 46.39 2.94
3103 12896 2.094390 TGCTTCGACCTGTTTAGCGTAT 60.094 45.455 0.00 0.00 34.65 3.06
3106 12899 1.144969 TTGCTTCGACCTGTTTAGCG 58.855 50.000 0.00 0.00 34.65 4.26
3120 12913 4.588528 ACCAACAACATGATAGGTTTGCTT 59.411 37.500 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.