Multiple sequence alignment - TraesCS2A01G066400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G066400 chr2A 100.000 3310 0 0 1 3310 29932771 29936080 0.000000e+00 6113.0
1 TraesCS2A01G066400 chr2A 100.000 2147 0 0 1 2147 29957579 29955433 0.000000e+00 3965.0
2 TraesCS2A01G066400 chr2A 85.910 731 100 3 1060 1790 31597561 31598288 0.000000e+00 776.0
3 TraesCS2A01G066400 chr2A 84.804 204 31 0 1943 2146 31598721 31598924 4.330000e-49 206.0
4 TraesCS2A01G066400 chr2A 82.653 196 22 10 779 970 29922620 29922807 2.640000e-36 163.0
5 TraesCS2A01G066400 chr2D 93.719 1401 47 23 779 2146 27824753 27823361 0.000000e+00 2061.0
6 TraesCS2A01G066400 chr2D 86.676 728 94 3 1063 1790 29285121 29285845 0.000000e+00 804.0
7 TraesCS2A01G066400 chr2D 90.877 285 24 2 3026 3310 27820599 27820317 6.700000e-102 381.0
8 TraesCS2A01G066400 chr2D 93.607 219 12 1 551 769 306134553 306134337 3.190000e-85 326.0
9 TraesCS2A01G066400 chr2D 93.785 177 9 2 2509 2685 516708477 516708303 7.040000e-67 265.0
10 TraesCS2A01G066400 chr2D 78.554 401 73 10 1397 1792 535621811 535621419 5.480000e-63 252.0
11 TraesCS2A01G066400 chr2D 85.876 177 25 0 1943 2119 29286239 29286415 4.360000e-44 189.0
12 TraesCS2A01G066400 chr2D 93.421 76 5 0 2877 2952 27820958 27820883 2.700000e-21 113.0
13 TraesCS2A01G066400 chr2B 91.530 1464 66 9 819 2242 44109861 44108416 0.000000e+00 1964.0
14 TraesCS2A01G066400 chr2B 90.358 1369 73 31 810 2146 44027544 44028885 0.000000e+00 1742.0
15 TraesCS2A01G066400 chr2B 85.948 733 97 6 1063 1790 47230962 47231693 0.000000e+00 778.0
16 TraesCS2A01G066400 chr2B 85.656 732 97 7 1063 1790 47250231 47249504 0.000000e+00 763.0
17 TraesCS2A01G066400 chr2B 93.151 219 13 1 551 769 113951861 113952077 1.480000e-83 320.0
18 TraesCS2A01G066400 chr2B 93.714 175 11 0 2503 2677 648961559 648961733 2.530000e-66 263.0
19 TraesCS2A01G066400 chr2B 92.391 184 13 1 2504 2687 174794992 174794810 9.110000e-66 261.0
20 TraesCS2A01G066400 chr2B 87.097 186 24 0 1961 2146 47249104 47248919 9.310000e-51 211.0
21 TraesCS2A01G066400 chr2B 94.488 127 6 1 435 560 234509205 234509331 9.370000e-46 195.0
22 TraesCS2A01G066400 chr2B 93.162 117 7 1 237 352 602272713 602272829 1.580000e-38 171.0
23 TraesCS2A01G066400 chrUn 93.151 219 13 1 551 769 45085236 45085452 1.480000e-83 320.0
24 TraesCS2A01G066400 chrUn 93.151 219 13 1 551 769 231545883 231546099 1.480000e-83 320.0
25 TraesCS2A01G066400 chrUn 94.488 127 6 1 435 560 182438771 182438645 9.370000e-46 195.0
26 TraesCS2A01G066400 chr7D 93.151 219 13 1 551 769 382044518 382044302 1.480000e-83 320.0
27 TraesCS2A01G066400 chr7D 74.542 601 131 14 1169 1761 487739148 487739734 3.300000e-60 243.0
28 TraesCS2A01G066400 chr7D 94.488 127 6 1 435 560 449411573 449411447 9.370000e-46 195.0
29 TraesCS2A01G066400 chr7D 92.500 40 3 0 2717 2756 24331087 24331126 1.280000e-04 58.4
30 TraesCS2A01G066400 chr7D 94.118 34 2 0 2717 2750 575150172 575150205 6.000000e-03 52.8
31 TraesCS2A01G066400 chr5B 93.151 219 13 1 551 769 130595129 130595345 1.480000e-83 320.0
32 TraesCS2A01G066400 chr5B 93.162 117 8 0 237 353 339452267 339452383 4.390000e-39 172.0
33 TraesCS2A01G066400 chr5B 92.308 117 9 0 235 351 139308620 139308504 2.040000e-37 167.0
34 TraesCS2A01G066400 chr3A 93.151 219 13 1 551 769 122220726 122220942 1.480000e-83 320.0
35 TraesCS2A01G066400 chr3A 94.488 127 6 1 435 560 122213078 122213204 9.370000e-46 195.0
36 TraesCS2A01G066400 chr1B 93.151 219 13 1 551 769 619175044 619175260 1.480000e-83 320.0
37 TraesCS2A01G066400 chr1B 94.488 127 6 1 435 560 583577686 583577812 9.370000e-46 195.0
38 TraesCS2A01G066400 chr1B 90.000 50 5 0 28 77 3975877 3975926 7.670000e-07 65.8
39 TraesCS2A01G066400 chr6A 95.294 170 8 0 2505 2674 105041906 105042075 1.510000e-68 270.0
40 TraesCS2A01G066400 chr6A 93.714 175 11 0 2506 2680 300069685 300069511 2.530000e-66 263.0
41 TraesCS2A01G066400 chr6A 73.171 328 78 7 1805 2127 186995089 186995411 3.490000e-20 110.0
42 TraesCS2A01G066400 chr6A 79.487 117 20 4 2677 2791 460806212 460806098 2.740000e-11 80.5
43 TraesCS2A01G066400 chr6A 100.000 31 0 0 2720 2750 50111851 50111821 1.280000e-04 58.4
44 TraesCS2A01G066400 chr4B 95.266 169 8 0 2508 2676 389466777 389466945 5.440000e-68 268.0
45 TraesCS2A01G066400 chr4B 92.308 117 9 0 237 353 432814147 432814263 2.040000e-37 167.0
46 TraesCS2A01G066400 chr5D 93.714 175 11 0 2503 2677 354096534 354096708 2.530000e-66 263.0
47 TraesCS2A01G066400 chr5D 94.286 35 2 0 2713 2747 81152775 81152809 2.000000e-03 54.7
48 TraesCS2A01G066400 chr4D 93.714 175 11 0 2506 2680 330859847 330859673 2.530000e-66 263.0
49 TraesCS2A01G066400 chr4D 94.488 127 6 1 435 560 398053948 398054074 9.370000e-46 195.0
50 TraesCS2A01G066400 chr4D 93.220 118 8 0 237 354 483475949 483475832 1.220000e-39 174.0
51 TraesCS2A01G066400 chr3D 93.714 175 11 0 2506 2680 171545175 171545001 2.530000e-66 263.0
52 TraesCS2A01G066400 chr3D 94.488 127 6 1 435 560 478068682 478068808 9.370000e-46 195.0
53 TraesCS2A01G066400 chr7B 94.488 127 6 1 435 560 742911510 742911384 9.370000e-46 195.0
54 TraesCS2A01G066400 chr1A 93.966 116 7 0 237 352 542286701 542286816 3.390000e-40 176.0
55 TraesCS2A01G066400 chr3B 91.870 123 9 1 237 358 822867825 822867947 1.580000e-38 171.0
56 TraesCS2A01G066400 chr6B 92.308 117 9 0 237 353 149486330 149486446 2.040000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G066400 chr2A 29932771 29936080 3309 False 6113.000000 6113 100.000000 1 3310 1 chr2A.!!$F2 3309
1 TraesCS2A01G066400 chr2A 29955433 29957579 2146 True 3965.000000 3965 100.000000 1 2147 1 chr2A.!!$R1 2146
2 TraesCS2A01G066400 chr2A 31597561 31598924 1363 False 491.000000 776 85.357000 1060 2146 2 chr2A.!!$F3 1086
3 TraesCS2A01G066400 chr2D 27820317 27824753 4436 True 851.666667 2061 92.672333 779 3310 3 chr2D.!!$R4 2531
4 TraesCS2A01G066400 chr2D 29285121 29286415 1294 False 496.500000 804 86.276000 1063 2119 2 chr2D.!!$F1 1056
5 TraesCS2A01G066400 chr2B 44108416 44109861 1445 True 1964.000000 1964 91.530000 819 2242 1 chr2B.!!$R1 1423
6 TraesCS2A01G066400 chr2B 44027544 44028885 1341 False 1742.000000 1742 90.358000 810 2146 1 chr2B.!!$F1 1336
7 TraesCS2A01G066400 chr2B 47230962 47231693 731 False 778.000000 778 85.948000 1063 1790 1 chr2B.!!$F2 727
8 TraesCS2A01G066400 chr2B 47248919 47250231 1312 True 487.000000 763 86.376500 1063 2146 2 chr2B.!!$R3 1083
9 TraesCS2A01G066400 chr7D 487739148 487739734 586 False 243.000000 243 74.542000 1169 1761 1 chr7D.!!$F2 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2521 0.685785 CTGGCTCCAGGCTCTAGTCA 60.686 60.0 8.03 0.49 40.17 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3272 5750 2.026822 ACTAAGAGATTGCTGTGTGGGG 60.027 50.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2147 2520 2.123409 CTGGCTCCAGGCTCTAGTC 58.877 63.158 8.03 0.00 40.17 2.59
2148 2521 0.685785 CTGGCTCCAGGCTCTAGTCA 60.686 60.000 8.03 0.49 40.17 3.41
2149 2522 0.972983 TGGCTCCAGGCTCTAGTCAC 60.973 60.000 1.39 0.00 41.69 3.67
2150 2523 1.681486 GGCTCCAGGCTCTAGTCACC 61.681 65.000 0.00 0.00 41.46 4.02
2154 2528 0.820871 CCAGGCTCTAGTCACCAGAC 59.179 60.000 0.00 0.00 45.31 3.51
2174 2577 2.669569 TGGCTTGCTGCTCGTTCC 60.670 61.111 0.00 0.00 42.39 3.62
2188 2591 2.731976 CTCGTTCCGTCAGAAAGAAAGG 59.268 50.000 0.00 0.00 41.56 3.11
2196 2599 3.933332 CGTCAGAAAGAAAGGATGGGTAC 59.067 47.826 0.00 0.00 0.00 3.34
2227 2630 8.455903 TTCATTTTCAGATCAGTTCAGTTTCT 57.544 30.769 0.00 0.00 0.00 2.52
2236 2639 7.980662 CAGATCAGTTCAGTTTCTGAGTATGAT 59.019 37.037 15.96 15.96 41.75 2.45
2238 2641 9.462174 GATCAGTTCAGTTTCTGAGTATGATAG 57.538 37.037 15.98 0.00 41.75 2.08
2242 2645 6.968263 TCAGTTTCTGAGTATGATAGGAGG 57.032 41.667 0.00 0.00 35.39 4.30
2243 2646 6.673583 TCAGTTTCTGAGTATGATAGGAGGA 58.326 40.000 0.00 0.00 35.39 3.71
2245 2648 7.286546 TCAGTTTCTGAGTATGATAGGAGGAAG 59.713 40.741 0.00 0.00 35.39 3.46
2246 2649 7.069331 CAGTTTCTGAGTATGATAGGAGGAAGT 59.931 40.741 0.00 0.00 32.44 3.01
2247 2650 7.286775 AGTTTCTGAGTATGATAGGAGGAAGTC 59.713 40.741 0.00 0.00 0.00 3.01
2261 2690 2.165845 AGGAAGTCCGTAATTCTGTCGG 59.834 50.000 0.00 0.00 44.76 4.79
2263 2692 0.892755 AGTCCGTAATTCTGTCGGCA 59.107 50.000 0.00 0.00 43.35 5.69
2286 2715 2.031157 CCAATTGGACAGGACAACGTTC 60.031 50.000 20.50 0.00 37.39 3.95
2296 2725 6.056428 ACAGGACAACGTTCTTAATTTGTC 57.944 37.500 0.00 0.40 44.69 3.18
2297 2726 5.820947 ACAGGACAACGTTCTTAATTTGTCT 59.179 36.000 11.32 0.00 44.76 3.41
2298 2727 6.317893 ACAGGACAACGTTCTTAATTTGTCTT 59.682 34.615 11.32 2.83 44.76 3.01
2304 2733 6.371809 ACGTTCTTAATTTGTCTTCTGCAA 57.628 33.333 0.00 0.00 0.00 4.08
2305 2734 6.970484 ACGTTCTTAATTTGTCTTCTGCAAT 58.030 32.000 0.00 0.00 0.00 3.56
2315 2744 7.712264 TTTGTCTTCTGCAATTAAATTGTGG 57.288 32.000 0.00 0.00 42.20 4.17
2316 2745 6.403866 TGTCTTCTGCAATTAAATTGTGGT 57.596 33.333 0.00 0.00 42.20 4.16
2317 2746 7.517614 TGTCTTCTGCAATTAAATTGTGGTA 57.482 32.000 0.00 0.00 42.20 3.25
2318 2747 7.946207 TGTCTTCTGCAATTAAATTGTGGTAA 58.054 30.769 0.00 0.00 42.20 2.85
2319 2748 8.417106 TGTCTTCTGCAATTAAATTGTGGTAAA 58.583 29.630 0.00 0.00 42.20 2.01
2320 2749 8.915654 GTCTTCTGCAATTAAATTGTGGTAAAG 58.084 33.333 0.00 0.00 42.20 1.85
2321 2750 8.637986 TCTTCTGCAATTAAATTGTGGTAAAGT 58.362 29.630 0.00 0.00 42.20 2.66
2322 2751 8.586570 TTCTGCAATTAAATTGTGGTAAAGTG 57.413 30.769 0.00 0.00 42.20 3.16
2323 2752 6.644592 TCTGCAATTAAATTGTGGTAAAGTGC 59.355 34.615 0.00 0.00 42.20 4.40
2324 2753 5.698545 TGCAATTAAATTGTGGTAAAGTGCC 59.301 36.000 3.75 0.00 42.20 5.01
2325 2754 5.698545 GCAATTAAATTGTGGTAAAGTGCCA 59.301 36.000 0.00 0.00 42.20 4.92
2351 2822 6.840780 AAAAAGGGAATTTCATCGACATCT 57.159 33.333 0.00 0.00 0.00 2.90
2354 2825 5.614324 AGGGAATTTCATCGACATCTGTA 57.386 39.130 0.00 0.00 0.00 2.74
2355 2826 6.179906 AGGGAATTTCATCGACATCTGTAT 57.820 37.500 0.00 0.00 0.00 2.29
2356 2827 6.595682 AGGGAATTTCATCGACATCTGTATT 58.404 36.000 0.00 0.00 0.00 1.89
2359 2830 9.653287 GGGAATTTCATCGACATCTGTATTATA 57.347 33.333 0.00 0.00 0.00 0.98
2412 2953 8.620116 TGTCAATATCTCATTGAGTTGTCAAA 57.380 30.769 13.23 0.00 45.88 2.69
2413 2954 8.506437 TGTCAATATCTCATTGAGTTGTCAAAC 58.494 33.333 13.23 6.03 45.88 2.93
2416 2957 7.856145 ATATCTCATTGAGTTGTCAAACCTC 57.144 36.000 13.23 0.00 45.88 3.85
2417 2958 5.034852 TCTCATTGAGTTGTCAAACCTCA 57.965 39.130 13.23 2.55 45.88 3.86
2420 2961 5.436175 TCATTGAGTTGTCAAACCTCAAGA 58.564 37.500 18.29 14.07 45.88 3.02
2444 2985 4.434713 AAATGATTAACTTGCGACCCAC 57.565 40.909 0.00 0.00 0.00 4.61
2445 2986 2.552599 TGATTAACTTGCGACCCACA 57.447 45.000 0.00 0.00 0.00 4.17
2449 2990 5.004448 TGATTAACTTGCGACCCACATAAA 58.996 37.500 0.00 0.00 0.00 1.40
2450 2991 5.123186 TGATTAACTTGCGACCCACATAAAG 59.877 40.000 0.00 0.00 0.00 1.85
2451 2992 2.851263 ACTTGCGACCCACATAAAGA 57.149 45.000 0.00 0.00 0.00 2.52
2452 2993 3.350219 ACTTGCGACCCACATAAAGAT 57.650 42.857 0.00 0.00 0.00 2.40
2453 2994 4.481368 ACTTGCGACCCACATAAAGATA 57.519 40.909 0.00 0.00 0.00 1.98
2454 2995 4.839121 ACTTGCGACCCACATAAAGATAA 58.161 39.130 0.00 0.00 0.00 1.75
2455 2996 4.634443 ACTTGCGACCCACATAAAGATAAC 59.366 41.667 0.00 0.00 0.00 1.89
2456 2997 4.481368 TGCGACCCACATAAAGATAACT 57.519 40.909 0.00 0.00 0.00 2.24
2494 3035 6.003234 ACAGACATAGACGCTCATACATAC 57.997 41.667 0.00 0.00 0.00 2.39
2497 3038 4.784329 ACATAGACGCTCATACATACACG 58.216 43.478 0.00 0.00 0.00 4.49
2500 3041 1.517276 GACGCTCATACATACACGCAC 59.483 52.381 0.00 0.00 0.00 5.34
2501 3042 0.852777 CGCTCATACATACACGCACC 59.147 55.000 0.00 0.00 0.00 5.01
2502 3043 1.536072 CGCTCATACATACACGCACCT 60.536 52.381 0.00 0.00 0.00 4.00
2503 3044 2.128035 GCTCATACATACACGCACCTC 58.872 52.381 0.00 0.00 0.00 3.85
2504 3045 2.481276 GCTCATACATACACGCACCTCA 60.481 50.000 0.00 0.00 0.00 3.86
2505 3046 3.116300 CTCATACATACACGCACCTCAC 58.884 50.000 0.00 0.00 0.00 3.51
2507 3048 3.132111 TCATACATACACGCACCTCACAT 59.868 43.478 0.00 0.00 0.00 3.21
2508 3049 4.339814 TCATACATACACGCACCTCACATA 59.660 41.667 0.00 0.00 0.00 2.29
2509 3050 3.819564 ACATACACGCACCTCACATAT 57.180 42.857 0.00 0.00 0.00 1.78
2510 3051 4.929819 ACATACACGCACCTCACATATA 57.070 40.909 0.00 0.00 0.00 0.86
2513 3054 3.438297 ACACGCACCTCACATATACTC 57.562 47.619 0.00 0.00 0.00 2.59
2514 3055 2.100916 ACACGCACCTCACATATACTCC 59.899 50.000 0.00 0.00 0.00 3.85
2515 3056 1.687123 ACGCACCTCACATATACTCCC 59.313 52.381 0.00 0.00 0.00 4.30
2516 3057 1.964223 CGCACCTCACATATACTCCCT 59.036 52.381 0.00 0.00 0.00 4.20
2517 3058 2.029828 CGCACCTCACATATACTCCCTC 60.030 54.545 0.00 0.00 0.00 4.30
2518 3059 2.300437 GCACCTCACATATACTCCCTCC 59.700 54.545 0.00 0.00 0.00 4.30
2519 3060 3.576861 CACCTCACATATACTCCCTCCA 58.423 50.000 0.00 0.00 0.00 3.86
2521 3062 4.594920 CACCTCACATATACTCCCTCCATT 59.405 45.833 0.00 0.00 0.00 3.16
2523 3064 4.223923 CCTCACATATACTCCCTCCATTCC 59.776 50.000 0.00 0.00 0.00 3.01
2524 3065 5.090139 CTCACATATACTCCCTCCATTCCT 58.910 45.833 0.00 0.00 0.00 3.36
2526 3067 6.630131 TCACATATACTCCCTCCATTCCTAA 58.370 40.000 0.00 0.00 0.00 2.69
2527 3068 7.079700 TCACATATACTCCCTCCATTCCTAAA 58.920 38.462 0.00 0.00 0.00 1.85
2528 3069 7.570982 TCACATATACTCCCTCCATTCCTAAAA 59.429 37.037 0.00 0.00 0.00 1.52
2529 3070 8.217799 CACATATACTCCCTCCATTCCTAAAAA 58.782 37.037 0.00 0.00 0.00 1.94
2568 3109 9.685276 AAGATTTCAAATGGACTATCACATACA 57.315 29.630 0.00 0.00 0.00 2.29
2569 3110 9.334947 AGATTTCAAATGGACTATCACATACAG 57.665 33.333 0.00 0.00 0.00 2.74
2570 3111 9.330063 GATTTCAAATGGACTATCACATACAGA 57.670 33.333 0.00 0.00 0.00 3.41
2571 3112 9.857656 ATTTCAAATGGACTATCACATACAGAT 57.142 29.630 0.00 0.00 0.00 2.90
2572 3113 8.667076 TTCAAATGGACTATCACATACAGATG 57.333 34.615 0.00 0.00 39.16 2.90
2574 3115 8.923270 TCAAATGGACTATCACATACAGATGTA 58.077 33.333 0.00 0.00 44.82 2.29
2575 3116 9.716531 CAAATGGACTATCACATACAGATGTAT 57.283 33.333 0.00 0.00 44.82 2.29
2615 3156 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2616 3157 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2617 3158 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2618 3159 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
2619 3160 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
2620 3161 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
2621 3162 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
2622 3163 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
2623 3164 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2624 3165 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2625 3166 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
2626 3167 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
2627 3168 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
2628 3169 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
2629 3170 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
2630 3171 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2631 3172 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2632 3173 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2633 3174 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2634 3175 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2635 3176 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2636 3177 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2637 3178 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2638 3179 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2639 3180 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2640 3181 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
2641 3182 7.201444 CGTATGTAGTCACTTGTTGAAATCTCC 60.201 40.741 0.00 0.00 35.39 3.71
2642 3183 4.988540 TGTAGTCACTTGTTGAAATCTCCG 59.011 41.667 0.00 0.00 35.39 4.63
2643 3184 3.403038 AGTCACTTGTTGAAATCTCCGG 58.597 45.455 0.00 0.00 35.39 5.14
2644 3185 3.071023 AGTCACTTGTTGAAATCTCCGGA 59.929 43.478 2.93 2.93 35.39 5.14
2645 3186 3.813166 GTCACTTGTTGAAATCTCCGGAA 59.187 43.478 5.23 0.00 35.39 4.30
2646 3187 4.274950 GTCACTTGTTGAAATCTCCGGAAA 59.725 41.667 5.23 0.00 35.39 3.13
2647 3188 4.515191 TCACTTGTTGAAATCTCCGGAAAG 59.485 41.667 5.23 5.35 0.00 2.62
2648 3189 4.515191 CACTTGTTGAAATCTCCGGAAAGA 59.485 41.667 5.23 0.00 0.00 2.52
2649 3190 4.515567 ACTTGTTGAAATCTCCGGAAAGAC 59.484 41.667 5.23 0.00 0.00 3.01
2650 3191 4.079980 TGTTGAAATCTCCGGAAAGACA 57.920 40.909 5.23 1.02 0.00 3.41
2651 3192 4.456535 TGTTGAAATCTCCGGAAAGACAA 58.543 39.130 5.23 6.15 0.00 3.18
2652 3193 4.884744 TGTTGAAATCTCCGGAAAGACAAA 59.115 37.500 5.23 0.00 0.00 2.83
2653 3194 5.534654 TGTTGAAATCTCCGGAAAGACAAAT 59.465 36.000 5.23 0.00 0.00 2.32
2654 3195 6.712998 TGTTGAAATCTCCGGAAAGACAAATA 59.287 34.615 5.23 0.00 0.00 1.40
2655 3196 7.393234 TGTTGAAATCTCCGGAAAGACAAATAT 59.607 33.333 5.23 0.00 0.00 1.28
2656 3197 7.938140 TGAAATCTCCGGAAAGACAAATATT 57.062 32.000 5.23 0.00 0.00 1.28
2657 3198 8.348285 TGAAATCTCCGGAAAGACAAATATTT 57.652 30.769 5.23 0.00 0.00 1.40
2658 3199 9.456147 TGAAATCTCCGGAAAGACAAATATTTA 57.544 29.630 5.23 0.00 0.00 1.40
2659 3200 9.937175 GAAATCTCCGGAAAGACAAATATTTAG 57.063 33.333 5.23 0.00 0.00 1.85
2660 3201 8.451908 AATCTCCGGAAAGACAAATATTTAGG 57.548 34.615 5.23 0.00 0.00 2.69
2661 3202 7.190335 TCTCCGGAAAGACAAATATTTAGGA 57.810 36.000 5.23 0.00 30.14 2.94
2662 3203 7.626390 TCTCCGGAAAGACAAATATTTAGGAA 58.374 34.615 5.23 0.00 30.35 3.36
2663 3204 7.551617 TCTCCGGAAAGACAAATATTTAGGAAC 59.448 37.037 5.23 0.00 30.35 3.62
2664 3205 6.314400 TCCGGAAAGACAAATATTTAGGAACG 59.686 38.462 0.00 1.03 28.69 3.95
2665 3206 6.457799 CCGGAAAGACAAATATTTAGGAACGG 60.458 42.308 0.00 6.06 0.00 4.44
2666 3207 6.314400 CGGAAAGACAAATATTTAGGAACGGA 59.686 38.462 0.00 0.00 0.00 4.69
2667 3208 7.465513 CGGAAAGACAAATATTTAGGAACGGAG 60.466 40.741 0.00 0.00 0.00 4.63
2668 3209 7.201705 GGAAAGACAAATATTTAGGAACGGAGG 60.202 40.741 0.00 0.00 0.00 4.30
2669 3210 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2670 3211 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2671 3212 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2672 3213 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2673 3214 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2674 3215 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
2675 3216 4.957684 ATTTAGGAACGGAGGGAGTATG 57.042 45.455 0.00 0.00 0.00 2.39
2676 3217 3.675348 TTAGGAACGGAGGGAGTATGA 57.325 47.619 0.00 0.00 0.00 2.15
2677 3218 1.777941 AGGAACGGAGGGAGTATGAC 58.222 55.000 0.00 0.00 0.00 3.06
2678 3219 1.006758 AGGAACGGAGGGAGTATGACA 59.993 52.381 0.00 0.00 0.00 3.58
2679 3220 2.040178 GGAACGGAGGGAGTATGACAT 58.960 52.381 0.00 0.00 0.00 3.06
2680 3221 2.036089 GGAACGGAGGGAGTATGACATC 59.964 54.545 0.00 0.00 0.00 3.06
2681 3222 1.705873 ACGGAGGGAGTATGACATCC 58.294 55.000 0.00 0.00 34.64 3.51
2682 3223 1.218196 ACGGAGGGAGTATGACATCCT 59.782 52.381 0.00 0.00 35.80 3.24
2683 3224 2.445905 ACGGAGGGAGTATGACATCCTA 59.554 50.000 0.00 0.00 35.80 2.94
2684 3225 3.085533 CGGAGGGAGTATGACATCCTAG 58.914 54.545 0.00 0.00 35.80 3.02
2685 3226 2.829120 GGAGGGAGTATGACATCCTAGC 59.171 54.545 0.00 0.00 35.80 3.42
2686 3227 2.829120 GAGGGAGTATGACATCCTAGCC 59.171 54.545 0.00 0.00 35.80 3.93
2687 3228 1.903183 GGGAGTATGACATCCTAGCCC 59.097 57.143 0.00 0.00 35.80 5.19
2688 3229 2.493687 GGGAGTATGACATCCTAGCCCT 60.494 54.545 0.00 0.00 35.80 5.19
2689 3230 3.245658 GGGAGTATGACATCCTAGCCCTA 60.246 52.174 0.00 0.00 35.80 3.53
2690 3231 4.573087 GGGAGTATGACATCCTAGCCCTAT 60.573 50.000 0.00 0.00 35.80 2.57
2691 3232 4.404073 GGAGTATGACATCCTAGCCCTATG 59.596 50.000 0.00 0.00 32.51 2.23
2692 3233 5.265191 GAGTATGACATCCTAGCCCTATGA 58.735 45.833 0.00 0.00 0.00 2.15
2693 3234 5.268387 AGTATGACATCCTAGCCCTATGAG 58.732 45.833 0.00 0.00 0.00 2.90
2694 3235 3.619900 TGACATCCTAGCCCTATGAGT 57.380 47.619 0.00 0.00 0.00 3.41
2695 3236 4.741928 TGACATCCTAGCCCTATGAGTA 57.258 45.455 0.00 0.00 0.00 2.59
2696 3237 4.408276 TGACATCCTAGCCCTATGAGTAC 58.592 47.826 0.00 0.00 0.00 2.73
2697 3238 4.106502 TGACATCCTAGCCCTATGAGTACT 59.893 45.833 0.00 0.00 0.00 2.73
2698 3239 5.081032 GACATCCTAGCCCTATGAGTACTT 58.919 45.833 0.00 0.00 0.00 2.24
2699 3240 5.468658 ACATCCTAGCCCTATGAGTACTTT 58.531 41.667 0.00 0.00 0.00 2.66
2700 3241 5.540719 ACATCCTAGCCCTATGAGTACTTTC 59.459 44.000 0.00 0.00 0.00 2.62
2701 3242 5.405063 TCCTAGCCCTATGAGTACTTTCT 57.595 43.478 0.00 0.00 0.00 2.52
2702 3243 5.778542 TCCTAGCCCTATGAGTACTTTCTT 58.221 41.667 0.00 0.00 0.00 2.52
2703 3244 5.834204 TCCTAGCCCTATGAGTACTTTCTTC 59.166 44.000 0.00 0.00 0.00 2.87
2704 3245 5.598830 CCTAGCCCTATGAGTACTTTCTTCA 59.401 44.000 0.00 0.00 0.00 3.02
2705 3246 5.606348 AGCCCTATGAGTACTTTCTTCAG 57.394 43.478 0.00 0.00 0.00 3.02
2706 3247 5.273208 AGCCCTATGAGTACTTTCTTCAGA 58.727 41.667 0.00 0.00 0.00 3.27
2707 3248 5.128008 AGCCCTATGAGTACTTTCTTCAGAC 59.872 44.000 0.00 0.00 0.00 3.51
2708 3249 5.682730 GCCCTATGAGTACTTTCTTCAGACC 60.683 48.000 0.00 0.00 0.00 3.85
2709 3250 5.422331 CCCTATGAGTACTTTCTTCAGACCA 59.578 44.000 0.00 0.00 0.00 4.02
2710 3251 6.070767 CCCTATGAGTACTTTCTTCAGACCAA 60.071 42.308 0.00 0.00 0.00 3.67
2711 3252 7.386851 CCTATGAGTACTTTCTTCAGACCAAA 58.613 38.462 0.00 0.00 0.00 3.28
2712 3253 7.332182 CCTATGAGTACTTTCTTCAGACCAAAC 59.668 40.741 0.00 0.00 0.00 2.93
2713 3254 6.235231 TGAGTACTTTCTTCAGACCAAACT 57.765 37.500 0.00 0.00 0.00 2.66
2714 3255 6.049149 TGAGTACTTTCTTCAGACCAAACTG 58.951 40.000 0.00 0.00 39.02 3.16
2715 3256 6.127168 TGAGTACTTTCTTCAGACCAAACTGA 60.127 38.462 0.00 0.00 43.83 3.41
2718 3259 4.878397 ACTTTCTTCAGACCAAACTGACAG 59.122 41.667 0.00 0.00 44.94 3.51
2721 3262 4.887748 TCTTCAGACCAAACTGACAGATC 58.112 43.478 10.08 0.00 44.94 2.75
2724 3265 4.825422 TCAGACCAAACTGACAGATCATC 58.175 43.478 10.08 0.29 41.21 2.92
2733 3274 7.414208 CCAAACTGACAGATCATCTTGAGATTG 60.414 40.741 10.08 0.00 33.22 2.67
2769 3310 5.049336 ACAGATGTATTATCAGTCGACGGAG 60.049 44.000 22.45 11.36 0.00 4.63
2791 3332 3.464907 ACATCTCCTCTCATTGAATGCG 58.535 45.455 0.00 0.00 0.00 4.73
2808 3349 0.876342 GCGCGTAAAGATAGCTGGCT 60.876 55.000 8.43 0.00 0.00 4.75
2814 3355 5.471257 GCGTAAAGATAGCTGGCTAGTAAT 58.529 41.667 8.31 0.00 31.45 1.89
2815 3356 5.346281 GCGTAAAGATAGCTGGCTAGTAATG 59.654 44.000 8.31 0.21 31.45 1.90
2825 3366 4.001652 CTGGCTAGTAATGCATCCATCTG 58.998 47.826 0.00 0.00 0.00 2.90
2834 4703 7.609960 AGTAATGCATCCATCTGATACTAGTG 58.390 38.462 5.39 0.00 30.56 2.74
2842 4711 4.498177 CCATCTGATACTAGTGTCACCACG 60.498 50.000 17.43 8.87 46.56 4.94
2884 4753 3.370103 CCCACCCACGTTAGAACATGTAT 60.370 47.826 0.00 0.00 0.00 2.29
2887 4756 5.116180 CACCCACGTTAGAACATGTATCAT 58.884 41.667 0.00 0.00 0.00 2.45
2894 4763 6.593770 ACGTTAGAACATGTATCATTGCAAGA 59.406 34.615 4.94 3.10 0.00 3.02
2952 5192 5.239306 CCGCACATATGGTCATGAAAACTAT 59.761 40.000 7.80 0.00 0.00 2.12
2954 5431 6.634035 CGCACATATGGTCATGAAAACTATTG 59.366 38.462 7.80 0.00 0.00 1.90
2956 5433 7.433131 GCACATATGGTCATGAAAACTATTGTG 59.567 37.037 7.80 7.43 34.19 3.33
2963 5440 7.176515 TGGTCATGAAAACTATTGTGCACTAAT 59.823 33.333 19.41 17.05 0.00 1.73
2967 5444 9.838975 CATGAAAACTATTGTGCACTAATTACA 57.161 29.630 19.41 10.57 0.00 2.41
2974 5451 9.712305 ACTATTGTGCACTAATTACAGGATATC 57.288 33.333 19.41 0.00 0.00 1.63
2992 5470 7.225538 CAGGATATCTTGTGTTAAGGCTAGTTG 59.774 40.741 6.67 0.00 0.00 3.16
2993 5471 7.125811 AGGATATCTTGTGTTAAGGCTAGTTGA 59.874 37.037 2.05 0.00 0.00 3.18
2994 5472 7.934120 GGATATCTTGTGTTAAGGCTAGTTGAT 59.066 37.037 2.05 0.00 0.00 2.57
2995 5473 9.331282 GATATCTTGTGTTAAGGCTAGTTGATT 57.669 33.333 0.00 0.00 0.00 2.57
2996 5474 6.801539 TCTTGTGTTAAGGCTAGTTGATTG 57.198 37.500 0.00 0.00 0.00 2.67
2997 5475 6.296026 TCTTGTGTTAAGGCTAGTTGATTGT 58.704 36.000 0.00 0.00 0.00 2.71
2998 5476 5.940192 TGTGTTAAGGCTAGTTGATTGTG 57.060 39.130 0.00 0.00 0.00 3.33
2999 5477 4.759693 TGTGTTAAGGCTAGTTGATTGTGG 59.240 41.667 0.00 0.00 0.00 4.17
3000 5478 5.001232 GTGTTAAGGCTAGTTGATTGTGGA 58.999 41.667 0.00 0.00 0.00 4.02
3001 5479 5.472137 GTGTTAAGGCTAGTTGATTGTGGAA 59.528 40.000 0.00 0.00 0.00 3.53
3002 5480 6.151144 GTGTTAAGGCTAGTTGATTGTGGAAT 59.849 38.462 0.00 0.00 0.00 3.01
3003 5481 7.335924 GTGTTAAGGCTAGTTGATTGTGGAATA 59.664 37.037 0.00 0.00 0.00 1.75
3004 5482 7.335924 TGTTAAGGCTAGTTGATTGTGGAATAC 59.664 37.037 0.00 0.00 0.00 1.89
3005 5483 5.435686 AGGCTAGTTGATTGTGGAATACA 57.564 39.130 0.00 0.00 37.56 2.29
3017 5495 6.817765 TTGTGGAATACAAAGAAGGATGAC 57.182 37.500 0.00 0.00 45.86 3.06
3018 5496 6.126863 TGTGGAATACAAAGAAGGATGACT 57.873 37.500 0.00 0.00 36.06 3.41
3019 5497 5.939883 TGTGGAATACAAAGAAGGATGACTG 59.060 40.000 0.00 0.00 36.06 3.51
3021 5499 6.431234 GTGGAATACAAAGAAGGATGACTGTT 59.569 38.462 0.00 0.00 0.00 3.16
3024 5502 3.554934 ACAAAGAAGGATGACTGTTGCA 58.445 40.909 0.00 0.00 0.00 4.08
3044 5522 3.243401 GCAATATTGCGGTTTTAGGAGGG 60.243 47.826 23.77 0.00 45.11 4.30
3045 5523 4.204012 CAATATTGCGGTTTTAGGAGGGA 58.796 43.478 1.74 0.00 0.00 4.20
3047 5525 0.326927 TTGCGGTTTTAGGAGGGAGG 59.673 55.000 0.00 0.00 0.00 4.30
3050 5528 1.271762 GCGGTTTTAGGAGGGAGGTTT 60.272 52.381 0.00 0.00 0.00 3.27
3052 5530 2.039348 CGGTTTTAGGAGGGAGGTTTGA 59.961 50.000 0.00 0.00 0.00 2.69
3053 5531 3.308188 CGGTTTTAGGAGGGAGGTTTGAT 60.308 47.826 0.00 0.00 0.00 2.57
3063 5541 5.396324 GGAGGGAGGTTTGATTTTGTTTGTT 60.396 40.000 0.00 0.00 0.00 2.83
3092 5570 5.788450 TGTTTAAGTGTTTGGCCATATTGG 58.212 37.500 6.09 0.00 41.55 3.16
3117 5595 6.688073 TTCTTCCAATTCAGTCCTCTACTT 57.312 37.500 0.00 0.00 35.76 2.24
3146 5624 7.974243 ATTACGGTAGTTTCAAACAAAACAC 57.026 32.000 2.41 0.00 40.77 3.32
3149 5627 6.391537 ACGGTAGTTTCAAACAAAACACAAT 58.608 32.000 2.41 0.00 40.77 2.71
3179 5657 2.472695 AAGCCGTAGATCACAAAGCA 57.527 45.000 0.00 0.00 0.00 3.91
3211 5689 5.614324 AATCACCCGACTCTTAATGATCA 57.386 39.130 0.00 0.00 0.00 2.92
3251 5729 7.248976 ACCATATATCTGGTCTCTATCCAACA 58.751 38.462 6.95 0.00 46.79 3.33
3252 5730 7.734865 ACCATATATCTGGTCTCTATCCAACAA 59.265 37.037 6.95 0.00 46.79 2.83
3254 5732 9.597170 CATATATCTGGTCTCTATCCAACAATG 57.403 37.037 0.00 0.00 34.35 2.82
3256 5734 5.344743 TCTGGTCTCTATCCAACAATGTC 57.655 43.478 0.00 0.00 34.35 3.06
3258 5736 5.089970 TGGTCTCTATCCAACAATGTCTG 57.910 43.478 0.00 0.00 31.50 3.51
3262 5740 6.344500 GTCTCTATCCAACAATGTCTGACAT 58.656 40.000 17.24 17.24 41.31 3.06
3281 5759 7.773224 TCTGACATAAATATTTACCCCACACAG 59.227 37.037 10.07 11.76 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2150 2523 3.576004 GCAGCAAGCCAGAGTCTG 58.424 61.111 13.56 13.56 37.23 3.51
2174 2577 3.059352 ACCCATCCTTTCTTTCTGACG 57.941 47.619 0.00 0.00 0.00 4.35
2196 2599 6.881065 TGAACTGATCTGAAAATGAAGTAGGG 59.119 38.462 6.60 0.00 0.00 3.53
2200 2603 7.814264 AACTGAACTGATCTGAAAATGAAGT 57.186 32.000 6.60 0.00 0.00 3.01
2213 2616 8.420222 CCTATCATACTCAGAAACTGAACTGAT 58.580 37.037 16.62 16.62 40.18 2.90
2227 2630 4.141228 ACGGACTTCCTCCTATCATACTCA 60.141 45.833 0.00 0.00 36.80 3.41
2236 2639 4.607239 ACAGAATTACGGACTTCCTCCTA 58.393 43.478 0.00 0.00 36.80 2.94
2238 2641 3.734293 CGACAGAATTACGGACTTCCTCC 60.734 52.174 0.00 0.00 35.33 4.30
2248 2651 1.934589 TGGATGCCGACAGAATTACG 58.065 50.000 0.00 0.00 0.00 3.18
2249 2652 4.498009 CCAATTGGATGCCGACAGAATTAC 60.498 45.833 20.50 0.00 37.39 1.89
2251 2654 2.428171 CCAATTGGATGCCGACAGAATT 59.572 45.455 20.50 0.00 37.39 2.17
2252 2655 2.026641 CCAATTGGATGCCGACAGAAT 58.973 47.619 20.50 0.00 37.39 2.40
2253 2656 1.004161 TCCAATTGGATGCCGACAGAA 59.996 47.619 23.63 0.00 39.78 3.02
2255 2658 3.173540 TCCAATTGGATGCCGACAG 57.826 52.632 23.63 0.00 39.78 3.51
2280 2709 6.371809 TGCAGAAGACAAATTAAGAACGTT 57.628 33.333 0.00 0.00 0.00 3.99
2296 2725 8.702438 CACTTTACCACAATTTAATTGCAGAAG 58.298 33.333 16.57 14.50 43.98 2.85
2297 2726 7.170658 GCACTTTACCACAATTTAATTGCAGAA 59.829 33.333 16.57 4.63 43.98 3.02
2298 2727 6.644592 GCACTTTACCACAATTTAATTGCAGA 59.355 34.615 16.57 0.00 43.98 4.26
2328 2757 6.209391 ACAGATGTCGATGAAATTCCCTTTTT 59.791 34.615 0.00 0.00 0.00 1.94
2329 2758 5.711976 ACAGATGTCGATGAAATTCCCTTTT 59.288 36.000 0.00 0.00 0.00 2.27
2330 2759 5.256474 ACAGATGTCGATGAAATTCCCTTT 58.744 37.500 0.00 0.00 0.00 3.11
2331 2760 4.848357 ACAGATGTCGATGAAATTCCCTT 58.152 39.130 0.00 0.00 0.00 3.95
2332 2761 4.494091 ACAGATGTCGATGAAATTCCCT 57.506 40.909 0.00 0.00 0.00 4.20
2333 2762 6.867662 AATACAGATGTCGATGAAATTCCC 57.132 37.500 0.00 0.00 0.00 3.97
2385 2856 9.889128 TTGACAACTCAATGAGATATTGACATA 57.111 29.630 18.20 6.38 34.66 2.29
2433 2974 4.876107 AGTTATCTTTATGTGGGTCGCAAG 59.124 41.667 0.00 0.00 0.00 4.01
2434 2975 4.839121 AGTTATCTTTATGTGGGTCGCAA 58.161 39.130 0.00 0.00 0.00 4.85
2470 3011 4.553756 TGTATGAGCGTCTATGTCTGTC 57.446 45.455 0.00 0.00 0.00 3.51
2476 3017 3.604198 GCGTGTATGTATGAGCGTCTATG 59.396 47.826 0.00 0.00 0.00 2.23
2477 3018 3.252458 TGCGTGTATGTATGAGCGTCTAT 59.748 43.478 0.00 0.00 0.00 1.98
2494 3035 2.545952 GGGAGTATATGTGAGGTGCGTG 60.546 54.545 0.00 0.00 0.00 5.34
2497 3038 2.300437 GGAGGGAGTATATGTGAGGTGC 59.700 54.545 0.00 0.00 0.00 5.01
2500 3041 4.223923 GGAATGGAGGGAGTATATGTGAGG 59.776 50.000 0.00 0.00 0.00 3.86
2501 3042 5.090139 AGGAATGGAGGGAGTATATGTGAG 58.910 45.833 0.00 0.00 0.00 3.51
2502 3043 5.093236 AGGAATGGAGGGAGTATATGTGA 57.907 43.478 0.00 0.00 0.00 3.58
2503 3044 6.935240 TTAGGAATGGAGGGAGTATATGTG 57.065 41.667 0.00 0.00 0.00 3.21
2504 3045 7.947782 TTTTAGGAATGGAGGGAGTATATGT 57.052 36.000 0.00 0.00 0.00 2.29
2542 3083 9.685276 TGTATGTGATAGTCCATTTGAAATCTT 57.315 29.630 0.00 0.00 0.00 2.40
2543 3084 9.334947 CTGTATGTGATAGTCCATTTGAAATCT 57.665 33.333 0.00 0.00 0.00 2.40
2544 3085 9.330063 TCTGTATGTGATAGTCCATTTGAAATC 57.670 33.333 0.00 0.00 0.00 2.17
2545 3086 9.857656 ATCTGTATGTGATAGTCCATTTGAAAT 57.142 29.630 0.00 0.00 0.00 2.17
2546 3087 9.112725 CATCTGTATGTGATAGTCCATTTGAAA 57.887 33.333 0.00 0.00 0.00 2.69
2547 3088 8.267183 ACATCTGTATGTGATAGTCCATTTGAA 58.733 33.333 0.00 0.00 44.79 2.69
2548 3089 7.795047 ACATCTGTATGTGATAGTCCATTTGA 58.205 34.615 0.00 0.00 44.79 2.69
2549 3090 9.716531 ATACATCTGTATGTGATAGTCCATTTG 57.283 33.333 2.10 0.00 45.99 2.32
2592 3133 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2593 3134 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2594 3135 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2595 3136 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
2596 3137 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
2597 3138 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
2598 3139 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2599 3140 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2600 3141 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2601 3142 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2602 3143 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
2603 3144 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
2604 3145 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
2605 3146 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
2606 3147 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2607 3148 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2608 3149 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2609 3150 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2610 3151 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2611 3152 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2612 3153 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2613 3154 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2614 3155 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2615 3156 7.201444 GGAGATTTCAACAAGTGACTACATACG 60.201 40.741 0.00 0.00 35.39 3.06
2616 3157 7.201444 CGGAGATTTCAACAAGTGACTACATAC 60.201 40.741 0.00 0.00 35.39 2.39
2617 3158 6.811665 CGGAGATTTCAACAAGTGACTACATA 59.188 38.462 0.00 0.00 35.39 2.29
2618 3159 5.639506 CGGAGATTTCAACAAGTGACTACAT 59.360 40.000 0.00 0.00 35.39 2.29
2619 3160 4.988540 CGGAGATTTCAACAAGTGACTACA 59.011 41.667 0.00 0.00 35.39 2.74
2620 3161 4.389077 CCGGAGATTTCAACAAGTGACTAC 59.611 45.833 0.00 0.00 35.39 2.73
2621 3162 4.282449 TCCGGAGATTTCAACAAGTGACTA 59.718 41.667 0.00 0.00 35.39 2.59
2622 3163 3.071023 TCCGGAGATTTCAACAAGTGACT 59.929 43.478 0.00 0.00 35.39 3.41
2623 3164 3.399330 TCCGGAGATTTCAACAAGTGAC 58.601 45.455 0.00 0.00 35.39 3.67
2624 3165 3.762407 TCCGGAGATTTCAACAAGTGA 57.238 42.857 0.00 0.00 0.00 3.41
2625 3166 4.515191 TCTTTCCGGAGATTTCAACAAGTG 59.485 41.667 3.34 0.00 0.00 3.16
2626 3167 4.515567 GTCTTTCCGGAGATTTCAACAAGT 59.484 41.667 3.34 0.00 0.00 3.16
2627 3168 4.515191 TGTCTTTCCGGAGATTTCAACAAG 59.485 41.667 3.34 1.99 0.00 3.16
2628 3169 4.456535 TGTCTTTCCGGAGATTTCAACAA 58.543 39.130 3.34 0.00 0.00 2.83
2629 3170 4.079980 TGTCTTTCCGGAGATTTCAACA 57.920 40.909 3.34 1.08 0.00 3.33
2630 3171 5.432885 TTTGTCTTTCCGGAGATTTCAAC 57.567 39.130 3.34 0.00 0.00 3.18
2631 3172 7.938140 ATATTTGTCTTTCCGGAGATTTCAA 57.062 32.000 3.34 5.71 0.00 2.69
2632 3173 7.938140 AATATTTGTCTTTCCGGAGATTTCA 57.062 32.000 3.34 0.00 0.00 2.69
2633 3174 9.937175 CTAAATATTTGTCTTTCCGGAGATTTC 57.063 33.333 11.05 0.00 0.00 2.17
2634 3175 8.903820 CCTAAATATTTGTCTTTCCGGAGATTT 58.096 33.333 11.05 0.00 0.00 2.17
2635 3176 8.272173 TCCTAAATATTTGTCTTTCCGGAGATT 58.728 33.333 11.05 0.00 0.00 2.40
2636 3177 7.802117 TCCTAAATATTTGTCTTTCCGGAGAT 58.198 34.615 11.05 0.00 0.00 2.75
2637 3178 7.190335 TCCTAAATATTTGTCTTTCCGGAGA 57.810 36.000 11.05 0.00 0.00 3.71
2638 3179 7.465513 CGTTCCTAAATATTTGTCTTTCCGGAG 60.466 40.741 11.05 0.00 0.00 4.63
2639 3180 6.314400 CGTTCCTAAATATTTGTCTTTCCGGA 59.686 38.462 11.05 0.00 0.00 5.14
2640 3181 6.457799 CCGTTCCTAAATATTTGTCTTTCCGG 60.458 42.308 11.05 0.00 0.00 5.14
2641 3182 6.314400 TCCGTTCCTAAATATTTGTCTTTCCG 59.686 38.462 11.05 4.70 0.00 4.30
2642 3183 7.201705 CCTCCGTTCCTAAATATTTGTCTTTCC 60.202 40.741 11.05 0.00 0.00 3.13
2643 3184 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2644 3185 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2645 3186 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2646 3187 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2647 3188 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2648 3189 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2649 3190 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2650 3191 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2651 3192 6.785963 TCATACTCCCTCCGTTCCTAAATATT 59.214 38.462 0.00 0.00 0.00 1.28
2652 3193 6.210984 GTCATACTCCCTCCGTTCCTAAATAT 59.789 42.308 0.00 0.00 0.00 1.28
2653 3194 5.537674 GTCATACTCCCTCCGTTCCTAAATA 59.462 44.000 0.00 0.00 0.00 1.40
2654 3195 4.344390 GTCATACTCCCTCCGTTCCTAAAT 59.656 45.833 0.00 0.00 0.00 1.40
2655 3196 3.703052 GTCATACTCCCTCCGTTCCTAAA 59.297 47.826 0.00 0.00 0.00 1.85
2656 3197 3.294214 GTCATACTCCCTCCGTTCCTAA 58.706 50.000 0.00 0.00 0.00 2.69
2657 3198 2.242965 TGTCATACTCCCTCCGTTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
2658 3199 1.006758 TGTCATACTCCCTCCGTTCCT 59.993 52.381 0.00 0.00 0.00 3.36
2659 3200 1.481871 TGTCATACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
2660 3201 2.036089 GGATGTCATACTCCCTCCGTTC 59.964 54.545 0.00 0.00 0.00 3.95
2661 3202 2.040178 GGATGTCATACTCCCTCCGTT 58.960 52.381 0.00 0.00 0.00 4.44
2662 3203 1.218196 AGGATGTCATACTCCCTCCGT 59.782 52.381 0.00 0.00 31.49 4.69
2663 3204 2.002505 AGGATGTCATACTCCCTCCG 57.997 55.000 0.00 0.00 31.49 4.63
2664 3205 2.829120 GCTAGGATGTCATACTCCCTCC 59.171 54.545 0.00 0.00 31.49 4.30
2665 3206 2.829120 GGCTAGGATGTCATACTCCCTC 59.171 54.545 0.00 0.00 31.49 4.30
2666 3207 2.493687 GGGCTAGGATGTCATACTCCCT 60.494 54.545 12.80 5.53 31.49 4.20
2667 3208 1.903183 GGGCTAGGATGTCATACTCCC 59.097 57.143 0.00 3.33 31.49 4.30
2668 3209 2.896039 AGGGCTAGGATGTCATACTCC 58.104 52.381 0.00 0.00 0.00 3.85
2669 3210 5.265191 TCATAGGGCTAGGATGTCATACTC 58.735 45.833 0.00 0.00 0.00 2.59
2670 3211 5.222442 ACTCATAGGGCTAGGATGTCATACT 60.222 44.000 2.35 2.35 0.00 2.12
2671 3212 5.020132 ACTCATAGGGCTAGGATGTCATAC 58.980 45.833 0.00 0.00 0.00 2.39
2672 3213 5.276694 ACTCATAGGGCTAGGATGTCATA 57.723 43.478 0.00 0.00 0.00 2.15
2673 3214 4.139162 ACTCATAGGGCTAGGATGTCAT 57.861 45.455 0.00 0.00 0.00 3.06
2674 3215 3.619900 ACTCATAGGGCTAGGATGTCA 57.380 47.619 0.00 0.00 0.00 3.58
2675 3216 4.668636 AGTACTCATAGGGCTAGGATGTC 58.331 47.826 0.00 0.00 0.00 3.06
2676 3217 4.750833 AGTACTCATAGGGCTAGGATGT 57.249 45.455 0.00 0.00 0.00 3.06
2677 3218 5.777732 AGAAAGTACTCATAGGGCTAGGATG 59.222 44.000 0.00 0.00 0.00 3.51
2678 3219 5.971493 AGAAAGTACTCATAGGGCTAGGAT 58.029 41.667 0.00 0.00 0.00 3.24
2679 3220 5.405063 AGAAAGTACTCATAGGGCTAGGA 57.595 43.478 0.00 0.00 0.00 2.94
2680 3221 5.598830 TGAAGAAAGTACTCATAGGGCTAGG 59.401 44.000 0.00 0.00 0.00 3.02
2681 3222 6.547880 TCTGAAGAAAGTACTCATAGGGCTAG 59.452 42.308 0.00 0.00 0.00 3.42
2682 3223 6.321690 GTCTGAAGAAAGTACTCATAGGGCTA 59.678 42.308 0.00 0.00 0.00 3.93
2683 3224 5.128008 GTCTGAAGAAAGTACTCATAGGGCT 59.872 44.000 0.00 0.00 0.00 5.19
2684 3225 5.353111 GTCTGAAGAAAGTACTCATAGGGC 58.647 45.833 0.00 0.00 0.00 5.19
2685 3226 5.422331 TGGTCTGAAGAAAGTACTCATAGGG 59.578 44.000 0.00 0.00 0.00 3.53
2686 3227 6.531503 TGGTCTGAAGAAAGTACTCATAGG 57.468 41.667 0.00 0.00 0.00 2.57
2687 3228 8.091449 AGTTTGGTCTGAAGAAAGTACTCATAG 58.909 37.037 0.00 0.00 0.00 2.23
2688 3229 7.872993 CAGTTTGGTCTGAAGAAAGTACTCATA 59.127 37.037 0.00 0.00 37.61 2.15
2689 3230 6.708054 CAGTTTGGTCTGAAGAAAGTACTCAT 59.292 38.462 0.00 0.00 37.61 2.90
2690 3231 6.049149 CAGTTTGGTCTGAAGAAAGTACTCA 58.951 40.000 0.00 0.00 37.61 3.41
2691 3232 6.201234 GTCAGTTTGGTCTGAAGAAAGTACTC 59.799 42.308 0.00 0.00 44.48 2.59
2692 3233 6.049790 GTCAGTTTGGTCTGAAGAAAGTACT 58.950 40.000 0.00 0.00 44.48 2.73
2693 3234 5.815740 TGTCAGTTTGGTCTGAAGAAAGTAC 59.184 40.000 0.00 0.00 44.48 2.73
2694 3235 5.984725 TGTCAGTTTGGTCTGAAGAAAGTA 58.015 37.500 0.00 0.00 44.48 2.24
2695 3236 4.843728 TGTCAGTTTGGTCTGAAGAAAGT 58.156 39.130 0.00 0.00 44.48 2.66
2696 3237 5.118990 TCTGTCAGTTTGGTCTGAAGAAAG 58.881 41.667 0.00 0.00 44.48 2.62
2697 3238 5.097742 TCTGTCAGTTTGGTCTGAAGAAA 57.902 39.130 0.00 0.00 44.48 2.52
2698 3239 4.753516 TCTGTCAGTTTGGTCTGAAGAA 57.246 40.909 0.00 0.00 44.48 2.52
2699 3240 4.344968 TGATCTGTCAGTTTGGTCTGAAGA 59.655 41.667 0.00 5.04 44.48 2.87
2700 3241 4.635223 TGATCTGTCAGTTTGGTCTGAAG 58.365 43.478 0.00 0.50 44.48 3.02
2701 3242 4.687901 TGATCTGTCAGTTTGGTCTGAA 57.312 40.909 0.00 0.00 44.48 3.02
2702 3243 4.529769 AGATGATCTGTCAGTTTGGTCTGA 59.470 41.667 0.00 0.00 41.40 3.27
2703 3244 4.829968 AGATGATCTGTCAGTTTGGTCTG 58.170 43.478 0.00 0.00 37.87 3.51
2704 3245 5.012458 TCAAGATGATCTGTCAGTTTGGTCT 59.988 40.000 0.00 0.00 37.87 3.85
2705 3246 5.240891 TCAAGATGATCTGTCAGTTTGGTC 58.759 41.667 0.00 0.00 37.87 4.02
2706 3247 5.012458 TCTCAAGATGATCTGTCAGTTTGGT 59.988 40.000 0.00 0.00 37.87 3.67
2707 3248 5.485620 TCTCAAGATGATCTGTCAGTTTGG 58.514 41.667 0.00 0.00 37.87 3.28
2708 3249 7.333672 TCAATCTCAAGATGATCTGTCAGTTTG 59.666 37.037 0.00 4.76 37.87 2.93
2709 3250 7.333921 GTCAATCTCAAGATGATCTGTCAGTTT 59.666 37.037 0.00 0.00 37.87 2.66
2710 3251 6.817641 GTCAATCTCAAGATGATCTGTCAGTT 59.182 38.462 0.00 0.00 37.87 3.16
2711 3252 6.339730 GTCAATCTCAAGATGATCTGTCAGT 58.660 40.000 0.00 0.00 37.87 3.41
2712 3253 5.459434 CGTCAATCTCAAGATGATCTGTCAG 59.541 44.000 0.00 0.00 37.87 3.51
2713 3254 5.126061 TCGTCAATCTCAAGATGATCTGTCA 59.874 40.000 0.00 0.00 39.04 3.58
2714 3255 5.586339 TCGTCAATCTCAAGATGATCTGTC 58.414 41.667 0.00 0.00 34.49 3.51
2715 3256 5.588958 TCGTCAATCTCAAGATGATCTGT 57.411 39.130 0.00 0.00 34.49 3.41
2718 3259 6.579583 CGATTTCGTCAATCTCAAGATGATC 58.420 40.000 8.00 0.00 39.50 2.92
2742 3283 5.621634 CGTCGACTGATAATACATCTGTGAC 59.378 44.000 14.70 8.27 31.74 3.67
2743 3284 5.277828 CCGTCGACTGATAATACATCTGTGA 60.278 44.000 14.70 0.00 31.74 3.58
2748 3289 5.049612 TGTCTCCGTCGACTGATAATACATC 60.050 44.000 14.70 0.00 35.00 3.06
2750 3291 4.193865 TGTCTCCGTCGACTGATAATACA 58.806 43.478 14.70 11.18 35.00 2.29
2751 3292 4.808077 TGTCTCCGTCGACTGATAATAC 57.192 45.455 14.70 8.96 35.00 1.89
2752 3293 5.306394 AGATGTCTCCGTCGACTGATAATA 58.694 41.667 14.70 3.05 35.00 0.98
2756 3297 1.944024 GAGATGTCTCCGTCGACTGAT 59.056 52.381 14.70 0.00 37.02 2.90
2757 3298 1.370609 GAGATGTCTCCGTCGACTGA 58.629 55.000 14.70 11.91 37.02 3.41
2758 3299 3.907927 GAGATGTCTCCGTCGACTG 57.092 57.895 14.70 7.40 37.02 3.51
2769 3310 3.493877 CGCATTCAATGAGAGGAGATGTC 59.506 47.826 0.00 0.00 31.20 3.06
2778 3319 3.258228 TCTTTACGCGCATTCAATGAGA 58.742 40.909 5.73 0.00 31.20 3.27
2781 3322 3.902465 GCTATCTTTACGCGCATTCAATG 59.098 43.478 5.73 0.00 0.00 2.82
2782 3323 3.809832 AGCTATCTTTACGCGCATTCAAT 59.190 39.130 5.73 0.00 0.00 2.57
2783 3324 3.001228 CAGCTATCTTTACGCGCATTCAA 59.999 43.478 5.73 0.00 0.00 2.69
2784 3325 2.539688 CAGCTATCTTTACGCGCATTCA 59.460 45.455 5.73 0.00 0.00 2.57
2785 3326 2.096713 CCAGCTATCTTTACGCGCATTC 60.097 50.000 5.73 0.00 0.00 2.67
2787 3328 1.502231 CCAGCTATCTTTACGCGCAT 58.498 50.000 5.73 0.00 0.00 4.73
2788 3329 1.151777 GCCAGCTATCTTTACGCGCA 61.152 55.000 5.73 0.00 0.00 6.09
2791 3332 3.372660 ACTAGCCAGCTATCTTTACGC 57.627 47.619 0.00 0.00 0.00 4.42
2808 3349 8.743714 CACTAGTATCAGATGGATGCATTACTA 58.256 37.037 12.96 12.96 40.69 1.82
2814 3355 4.895297 TGACACTAGTATCAGATGGATGCA 59.105 41.667 0.00 0.00 40.69 3.96
2815 3356 5.226396 GTGACACTAGTATCAGATGGATGC 58.774 45.833 3.52 0.00 38.74 3.91
2834 4703 1.336755 ACCAAAATTGCTCGTGGTGAC 59.663 47.619 0.00 0.00 42.79 3.67
2842 4711 4.462483 TGGGATACTTCACCAAAATTGCTC 59.538 41.667 0.00 0.00 0.00 4.26
2869 4738 6.593770 TCTTGCAATGATACATGTTCTAACGT 59.406 34.615 2.30 0.00 0.00 3.99
2884 4753 1.980951 GCGACCGCATCTTGCAATGA 61.981 55.000 9.73 0.00 45.36 2.57
2887 4756 3.787676 CGCGACCGCATCTTGCAA 61.788 61.111 14.91 0.00 45.36 4.08
2894 4763 2.658593 GTGCTATCGCGACCGCAT 60.659 61.111 29.09 10.57 42.06 4.73
2901 4770 3.743886 TGATAACTATCGTGCTATCGCG 58.256 45.455 0.00 0.00 46.68 5.87
2903 4772 7.640630 GGAAGTATGATAACTATCGTGCTATCG 59.359 40.741 9.20 0.00 41.67 2.92
2952 5192 8.046708 ACAAGATATCCTGTAATTAGTGCACAA 58.953 33.333 21.04 11.68 0.00 3.33
2954 5431 7.495934 ACACAAGATATCCTGTAATTAGTGCAC 59.504 37.037 9.40 9.40 0.00 4.57
2956 5433 8.438676 AACACAAGATATCCTGTAATTAGTGC 57.561 34.615 6.65 0.00 0.00 4.40
2963 5440 7.195374 AGCCTTAACACAAGATATCCTGTAA 57.805 36.000 6.65 0.00 0.00 2.41
2966 5443 6.821388 ACTAGCCTTAACACAAGATATCCTG 58.179 40.000 0.00 0.00 0.00 3.86
2967 5444 7.125811 TCAACTAGCCTTAACACAAGATATCCT 59.874 37.037 0.00 0.00 0.00 3.24
2974 5451 6.373779 CACAATCAACTAGCCTTAACACAAG 58.626 40.000 0.00 0.00 0.00 3.16
2976 5453 4.759693 CCACAATCAACTAGCCTTAACACA 59.240 41.667 0.00 0.00 0.00 3.72
2992 5470 7.337942 AGTCATCCTTCTTTGTATTCCACAATC 59.662 37.037 0.00 0.00 46.38 2.67
2993 5471 7.121759 CAGTCATCCTTCTTTGTATTCCACAAT 59.878 37.037 0.00 0.00 46.38 2.71
2994 5472 6.430925 CAGTCATCCTTCTTTGTATTCCACAA 59.569 38.462 0.00 0.00 45.49 3.33
2995 5473 5.939883 CAGTCATCCTTCTTTGTATTCCACA 59.060 40.000 0.00 0.00 34.51 4.17
2996 5474 5.940470 ACAGTCATCCTTCTTTGTATTCCAC 59.060 40.000 0.00 0.00 0.00 4.02
2997 5475 6.126863 ACAGTCATCCTTCTTTGTATTCCA 57.873 37.500 0.00 0.00 0.00 3.53
2998 5476 6.623767 GCAACAGTCATCCTTCTTTGTATTCC 60.624 42.308 0.00 0.00 0.00 3.01
2999 5477 6.072508 TGCAACAGTCATCCTTCTTTGTATTC 60.073 38.462 0.00 0.00 0.00 1.75
3000 5478 5.769662 TGCAACAGTCATCCTTCTTTGTATT 59.230 36.000 0.00 0.00 0.00 1.89
3001 5479 5.316167 TGCAACAGTCATCCTTCTTTGTAT 58.684 37.500 0.00 0.00 0.00 2.29
3002 5480 4.713553 TGCAACAGTCATCCTTCTTTGTA 58.286 39.130 0.00 0.00 0.00 2.41
3003 5481 3.554934 TGCAACAGTCATCCTTCTTTGT 58.445 40.909 0.00 0.00 0.00 2.83
3004 5482 4.572985 TTGCAACAGTCATCCTTCTTTG 57.427 40.909 0.00 0.00 0.00 2.77
3005 5483 7.318141 CAATATTGCAACAGTCATCCTTCTTT 58.682 34.615 0.00 0.00 0.00 2.52
3006 5484 6.860080 CAATATTGCAACAGTCATCCTTCTT 58.140 36.000 0.00 0.00 0.00 2.52
3007 5485 6.446781 CAATATTGCAACAGTCATCCTTCT 57.553 37.500 0.00 0.00 0.00 2.85
3024 5502 4.461198 CTCCCTCCTAAAACCGCAATATT 58.539 43.478 0.00 0.00 0.00 1.28
3031 5509 2.039348 TCAAACCTCCCTCCTAAAACCG 59.961 50.000 0.00 0.00 0.00 4.44
3040 5518 5.276461 ACAAACAAAATCAAACCTCCCTC 57.724 39.130 0.00 0.00 0.00 4.30
3041 5519 5.427378 CAACAAACAAAATCAAACCTCCCT 58.573 37.500 0.00 0.00 0.00 4.20
3044 5522 7.835634 TTACCAACAAACAAAATCAAACCTC 57.164 32.000 0.00 0.00 0.00 3.85
3045 5523 7.826744 ACATTACCAACAAACAAAATCAAACCT 59.173 29.630 0.00 0.00 0.00 3.50
3047 5525 9.833182 AAACATTACCAACAAACAAAATCAAAC 57.167 25.926 0.00 0.00 0.00 2.93
3053 5531 9.490379 ACACTTAAACATTACCAACAAACAAAA 57.510 25.926 0.00 0.00 0.00 2.44
3063 5541 4.649674 TGGCCAAACACTTAAACATTACCA 59.350 37.500 0.61 0.00 0.00 3.25
3092 5570 6.468543 AGTAGAGGACTGAATTGGAAGAAAC 58.531 40.000 0.00 0.00 36.87 2.78
3141 5619 7.430441 ACGGCTTACTTTGAATAATTGTGTTT 58.570 30.769 0.00 0.00 0.00 2.83
3146 5624 8.826710 TGATCTACGGCTTACTTTGAATAATTG 58.173 33.333 0.00 0.00 0.00 2.32
3149 5627 7.324935 TGTGATCTACGGCTTACTTTGAATAA 58.675 34.615 0.00 0.00 0.00 1.40
3179 5657 2.372172 AGTCGGGTGATTTTCACTTCCT 59.628 45.455 7.51 0.00 46.19 3.36
3194 5672 6.367149 CACACATATGATCATTAAGAGTCGGG 59.633 42.308 14.65 0.00 0.00 5.14
3197 5675 8.654230 ACACACACATATGATCATTAAGAGTC 57.346 34.615 14.65 0.00 0.00 3.36
3227 5705 7.724490 TGTTGGATAGAGACCAGATATATGG 57.276 40.000 14.96 14.96 46.47 2.74
3235 5713 5.105187 TCAGACATTGTTGGATAGAGACCAG 60.105 44.000 0.00 0.00 38.70 4.00
3251 5729 9.131791 GTGGGGTAAATATTTATGTCAGACATT 57.868 33.333 21.30 6.41 39.88 2.71
3252 5730 8.278639 TGTGGGGTAAATATTTATGTCAGACAT 58.721 33.333 20.04 20.04 42.35 3.06
3254 5732 7.554835 TGTGTGGGGTAAATATTTATGTCAGAC 59.445 37.037 11.00 15.34 0.00 3.51
3256 5734 7.468631 GCTGTGTGGGGTAAATATTTATGTCAG 60.469 40.741 11.00 12.31 0.00 3.51
3258 5736 6.320164 TGCTGTGTGGGGTAAATATTTATGTC 59.680 38.462 11.00 4.84 0.00 3.06
3262 5740 7.122715 AGATTGCTGTGTGGGGTAAATATTTA 58.877 34.615 3.71 3.71 0.00 1.40
3272 5750 2.026822 ACTAAGAGATTGCTGTGTGGGG 60.027 50.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.