Multiple sequence alignment - TraesCS2A01G065700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G065700 chr2A 100.000 1771 0 0 1 1771 29722523 29720753 0.000000e+00 3271.0
1 TraesCS2A01G065700 chr2A 100.000 1208 0 0 2157 3364 29720367 29719160 0.000000e+00 2231.0
2 TraesCS2A01G065700 chr2A 87.943 141 15 2 1598 1737 663329316 663329177 7.470000e-37 165.0
3 TraesCS2A01G065700 chr2D 92.247 1393 45 20 391 1759 27484083 27482730 0.000000e+00 1916.0
4 TraesCS2A01G065700 chr2D 84.971 519 28 17 2232 2734 27482659 27482175 6.530000e-132 481.0
5 TraesCS2A01G065700 chr2D 86.786 280 34 2 3087 3364 542710182 542709904 3.260000e-80 309.0
6 TraesCS2A01G065700 chr2D 86.331 278 36 1 3089 3364 365796734 365796457 5.450000e-78 302.0
7 TraesCS2A01G065700 chr2D 91.061 179 7 2 27 197 27484420 27484243 2.020000e-57 233.0
8 TraesCS2A01G065700 chr2D 86.525 141 17 2 1598 1737 519133965 519133826 1.620000e-33 154.0
9 TraesCS2A01G065700 chr2D 82.317 164 13 7 2777 2939 27482180 27482032 9.800000e-26 128.0
10 TraesCS2A01G065700 chr2B 96.129 930 34 1 834 1763 43232741 43233668 0.000000e+00 1517.0
11 TraesCS2A01G065700 chr2B 83.957 561 21 28 2167 2709 43233678 43234187 1.090000e-129 473.0
12 TraesCS2A01G065700 chr2B 81.152 573 81 19 1048 1596 563046394 563045825 5.150000e-118 435.0
13 TraesCS2A01G065700 chr2B 75.915 519 66 32 23 511 43232022 43232511 9.460000e-51 211.0
14 TraesCS2A01G065700 chr2B 93.333 120 8 0 1595 1714 216710519 216710638 9.590000e-41 178.0
15 TraesCS2A01G065700 chr2B 87.234 141 16 2 1598 1737 611283874 611283735 3.470000e-35 159.0
16 TraesCS2A01G065700 chr2B 83.750 80 5 1 3004 3075 43234335 43234414 6.020000e-08 69.4
17 TraesCS2A01G065700 chr5B 81.429 700 114 13 1044 1734 712397235 712397927 2.930000e-155 558.0
18 TraesCS2A01G065700 chr7B 80.344 697 117 16 1044 1729 782777 782090 8.330000e-141 510.0
19 TraesCS2A01G065700 chr5D 80.029 701 128 11 1041 1734 562029045 562029740 2.990000e-140 508.0
20 TraesCS2A01G065700 chr5D 79.723 577 92 17 1041 1596 128565437 128564865 8.750000e-106 394.0
21 TraesCS2A01G065700 chr6A 79.215 688 121 21 1038 1713 51760746 51761423 3.060000e-125 459.0
22 TraesCS2A01G065700 chr6B 78.909 678 122 20 1048 1713 96655207 96654539 1.110000e-119 440.0
23 TraesCS2A01G065700 chr6D 78.540 685 124 22 1043 1713 41207096 41207771 2.400000e-116 429.0
24 TraesCS2A01G065700 chr7A 87.591 274 34 0 3091 3364 661085857 661086130 5.420000e-83 318.0
25 TraesCS2A01G065700 chr4D 87.681 276 30 2 3091 3364 437945749 437945476 5.420000e-83 318.0
26 TraesCS2A01G065700 chr3A 87.591 274 34 0 3091 3364 447616851 447616578 5.420000e-83 318.0
27 TraesCS2A01G065700 chr3A 86.691 278 35 1 3089 3364 486036654 486036377 1.170000e-79 307.0
28 TraesCS2A01G065700 chr1A 87.681 276 30 2 3091 3364 131255754 131256027 5.420000e-83 318.0
29 TraesCS2A01G065700 chr1A 86.331 278 35 2 3089 3364 6021326 6021050 1.960000e-77 300.0
30 TraesCS2A01G065700 chr4A 86.282 277 38 0 3088 3364 340490622 340490898 5.450000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G065700 chr2A 29719160 29722523 3363 True 2751.0 3271 100.00000 1 3364 2 chr2A.!!$R2 3363
1 TraesCS2A01G065700 chr2D 27482032 27484420 2388 True 689.5 1916 87.64900 27 2939 4 chr2D.!!$R4 2912
2 TraesCS2A01G065700 chr2B 43232022 43234414 2392 False 567.6 1517 84.93775 23 3075 4 chr2B.!!$F2 3052
3 TraesCS2A01G065700 chr2B 563045825 563046394 569 True 435.0 435 81.15200 1048 1596 1 chr2B.!!$R1 548
4 TraesCS2A01G065700 chr5B 712397235 712397927 692 False 558.0 558 81.42900 1044 1734 1 chr5B.!!$F1 690
5 TraesCS2A01G065700 chr7B 782090 782777 687 True 510.0 510 80.34400 1044 1729 1 chr7B.!!$R1 685
6 TraesCS2A01G065700 chr5D 562029045 562029740 695 False 508.0 508 80.02900 1041 1734 1 chr5D.!!$F1 693
7 TraesCS2A01G065700 chr5D 128564865 128565437 572 True 394.0 394 79.72300 1041 1596 1 chr5D.!!$R1 555
8 TraesCS2A01G065700 chr6A 51760746 51761423 677 False 459.0 459 79.21500 1038 1713 1 chr6A.!!$F1 675
9 TraesCS2A01G065700 chr6B 96654539 96655207 668 True 440.0 440 78.90900 1048 1713 1 chr6B.!!$R1 665
10 TraesCS2A01G065700 chr6D 41207096 41207771 675 False 429.0 429 78.54000 1043 1713 1 chr6D.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 211 0.043334 ATCCTAGCCGGGATAGCCAT 59.957 55.0 13.84 5.14 43.56 4.40 F
220 231 0.252012 AGGGAGGTGAGTGAGGTGAG 60.252 60.0 0.00 0.00 0.00 3.51 F
805 882 0.318955 GATGCACAACAACCAGCACC 60.319 55.0 0.00 0.00 40.14 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2312 0.767375 TGCTTGCAAGAGGAAGAGGT 59.233 50.000 30.39 0.00 45.07 3.85 R
2192 2317 1.610522 GCTTCTTGCTTGCAAGAGGAA 59.389 47.619 35.28 23.91 41.56 3.36 R
2674 2831 0.039256 AAACACGCATGCATCACACC 60.039 50.000 19.57 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.454573 AATAGGGTCGCGCGGTGA 61.455 61.111 31.69 8.02 0.00 4.02
18 19 3.009192 AATAGGGTCGCGCGGTGAA 62.009 57.895 31.69 7.56 0.00 3.18
19 20 2.901051 AATAGGGTCGCGCGGTGAAG 62.901 60.000 31.69 0.00 0.00 3.02
22 23 4.072088 GGTCGCGCGGTGAAGTTG 62.072 66.667 31.69 0.00 0.00 3.16
23 24 4.072088 GTCGCGCGGTGAAGTTGG 62.072 66.667 31.69 0.00 0.00 3.77
30 31 1.497278 CGGTGAAGTTGGCGTCATG 59.503 57.895 0.00 0.00 35.70 3.07
172 183 3.117552 ACCTACCGGAAGAAGGAATCT 57.882 47.619 9.46 0.00 41.32 2.40
197 208 0.533032 GTGATCCTAGCCGGGATAGC 59.467 60.000 13.84 1.37 45.18 2.97
198 209 0.614979 TGATCCTAGCCGGGATAGCC 60.615 60.000 13.84 5.85 45.18 3.93
199 210 0.614979 GATCCTAGCCGGGATAGCCA 60.615 60.000 13.84 2.90 45.18 4.75
200 211 0.043334 ATCCTAGCCGGGATAGCCAT 59.957 55.000 13.84 5.14 43.56 4.40
201 212 0.708209 TCCTAGCCGGGATAGCCATA 59.292 55.000 13.84 0.00 35.15 2.74
203 214 1.115467 CTAGCCGGGATAGCCATAGG 58.885 60.000 6.36 0.00 35.15 2.57
205 216 1.612442 GCCGGGATAGCCATAGGGA 60.612 63.158 2.18 0.00 35.59 4.20
206 217 1.617947 GCCGGGATAGCCATAGGGAG 61.618 65.000 2.18 0.00 35.59 4.30
207 218 0.978146 CCGGGATAGCCATAGGGAGG 60.978 65.000 0.00 0.00 35.59 4.30
208 219 0.252284 CGGGATAGCCATAGGGAGGT 60.252 60.000 0.00 0.00 35.59 3.85
209 220 1.280457 GGGATAGCCATAGGGAGGTG 58.720 60.000 0.00 0.00 35.59 4.00
210 221 1.203313 GGGATAGCCATAGGGAGGTGA 60.203 57.143 0.00 0.00 35.59 4.02
211 222 2.183679 GGATAGCCATAGGGAGGTGAG 58.816 57.143 0.00 0.00 35.59 3.51
212 223 2.493687 GGATAGCCATAGGGAGGTGAGT 60.494 54.545 0.00 0.00 35.59 3.41
213 224 2.088104 TAGCCATAGGGAGGTGAGTG 57.912 55.000 0.00 0.00 35.59 3.51
214 225 0.339859 AGCCATAGGGAGGTGAGTGA 59.660 55.000 0.00 0.00 35.59 3.41
215 226 0.755686 GCCATAGGGAGGTGAGTGAG 59.244 60.000 0.00 0.00 35.59 3.51
216 227 1.418334 CCATAGGGAGGTGAGTGAGG 58.582 60.000 0.00 0.00 35.59 3.86
217 228 1.343478 CCATAGGGAGGTGAGTGAGGT 60.343 57.143 0.00 0.00 35.59 3.85
218 229 1.759445 CATAGGGAGGTGAGTGAGGTG 59.241 57.143 0.00 0.00 0.00 4.00
219 230 1.081481 TAGGGAGGTGAGTGAGGTGA 58.919 55.000 0.00 0.00 0.00 4.02
220 231 0.252012 AGGGAGGTGAGTGAGGTGAG 60.252 60.000 0.00 0.00 0.00 3.51
221 232 1.261238 GGGAGGTGAGTGAGGTGAGG 61.261 65.000 0.00 0.00 0.00 3.86
222 233 0.543174 GGAGGTGAGTGAGGTGAGGT 60.543 60.000 0.00 0.00 0.00 3.85
223 234 0.605589 GAGGTGAGTGAGGTGAGGTG 59.394 60.000 0.00 0.00 0.00 4.00
224 235 0.833834 AGGTGAGTGAGGTGAGGTGG 60.834 60.000 0.00 0.00 0.00 4.61
225 236 1.674057 GTGAGTGAGGTGAGGTGGG 59.326 63.158 0.00 0.00 0.00 4.61
226 237 0.832135 GTGAGTGAGGTGAGGTGGGA 60.832 60.000 0.00 0.00 0.00 4.37
227 238 0.542938 TGAGTGAGGTGAGGTGGGAG 60.543 60.000 0.00 0.00 0.00 4.30
228 239 0.543174 GAGTGAGGTGAGGTGGGAGT 60.543 60.000 0.00 0.00 0.00 3.85
229 240 0.833834 AGTGAGGTGAGGTGGGAGTG 60.834 60.000 0.00 0.00 0.00 3.51
230 241 1.536418 TGAGGTGAGGTGGGAGTGG 60.536 63.158 0.00 0.00 0.00 4.00
231 242 2.930562 AGGTGAGGTGGGAGTGGC 60.931 66.667 0.00 0.00 0.00 5.01
232 243 3.249189 GGTGAGGTGGGAGTGGCA 61.249 66.667 0.00 0.00 0.00 4.92
252 263 2.486951 GCAGAATCATTGCTTGCGAT 57.513 45.000 0.00 0.00 38.51 4.58
253 264 3.614159 GCAGAATCATTGCTTGCGATA 57.386 42.857 0.00 0.00 38.51 2.92
255 266 3.538780 CAGAATCATTGCTTGCGATACG 58.461 45.455 0.00 0.00 0.00 3.06
267 295 2.173669 CGATACGCTGCACCCTTGG 61.174 63.158 0.00 0.00 0.00 3.61
268 296 1.819632 GATACGCTGCACCCTTGGG 60.820 63.158 3.77 3.77 0.00 4.12
269 297 2.252072 GATACGCTGCACCCTTGGGA 62.252 60.000 13.39 0.00 0.00 4.37
270 298 1.847798 ATACGCTGCACCCTTGGGAA 61.848 55.000 13.39 0.00 0.00 3.97
306 343 3.883830 TGGGCGTGCAATAATTTCATT 57.116 38.095 0.00 0.00 0.00 2.57
308 345 3.194329 TGGGCGTGCAATAATTTCATTCA 59.806 39.130 0.00 0.00 0.00 2.57
338 376 3.060272 GTCCATGCGACGTCATAATTCTG 60.060 47.826 17.16 2.69 0.00 3.02
340 378 3.309682 CCATGCGACGTCATAATTCTGTT 59.690 43.478 17.16 0.00 0.00 3.16
341 379 4.508971 CATGCGACGTCATAATTCTGTTC 58.491 43.478 17.16 0.00 0.00 3.18
342 380 3.845178 TGCGACGTCATAATTCTGTTCT 58.155 40.909 17.16 0.00 0.00 3.01
343 381 4.989044 TGCGACGTCATAATTCTGTTCTA 58.011 39.130 17.16 0.00 0.00 2.10
344 382 4.796830 TGCGACGTCATAATTCTGTTCTAC 59.203 41.667 17.16 0.00 0.00 2.59
437 508 1.403814 TTGATAGAGTGAGAGGCGGG 58.596 55.000 0.00 0.00 0.00 6.13
447 518 3.967987 AGTGAGAGGCGGGATATTAAAGT 59.032 43.478 0.00 0.00 0.00 2.66
475 550 4.563976 GCATTTGGTGATAATGACAACTGC 59.436 41.667 0.00 0.00 40.50 4.40
476 551 5.622914 GCATTTGGTGATAATGACAACTGCT 60.623 40.000 10.13 0.00 42.51 4.24
477 552 6.404623 GCATTTGGTGATAATGACAACTGCTA 60.405 38.462 10.13 0.00 42.51 3.49
478 553 7.682741 GCATTTGGTGATAATGACAACTGCTAT 60.683 37.037 10.13 0.00 42.51 2.97
520 595 0.609131 CCCCAATGATATGCCCGACC 60.609 60.000 0.00 0.00 0.00 4.79
544 619 6.611236 CCCCAACTAAAACCCTAATGATTCAT 59.389 38.462 0.00 0.00 0.00 2.57
545 620 7.125659 CCCCAACTAAAACCCTAATGATTCATT 59.874 37.037 15.78 15.78 37.80 2.57
546 621 8.197439 CCCAACTAAAACCCTAATGATTCATTC 58.803 37.037 14.99 0.00 35.54 2.67
547 622 8.748412 CCAACTAAAACCCTAATGATTCATTCA 58.252 33.333 14.99 2.58 39.12 2.57
587 662 2.124983 GCCAGCGCCATCTTCTCA 60.125 61.111 2.29 0.00 0.00 3.27
599 674 4.691685 GCCATCTTCTCATGTCATCTCATC 59.308 45.833 0.00 0.00 0.00 2.92
609 684 3.650948 TGTCATCTCATCTCATGTCCCT 58.349 45.455 0.00 0.00 0.00 4.20
656 733 8.693504 CACTTAATTTGTGTTGCAATCACTAAG 58.306 33.333 23.37 22.10 36.89 2.18
664 741 4.211164 TGTTGCAATCACTAAGTCAGTTCG 59.789 41.667 0.59 0.00 34.26 3.95
672 749 7.667043 ATCACTAAGTCAGTTCGCAATAAAA 57.333 32.000 0.00 0.00 34.26 1.52
705 782 3.008375 CGTGACTCCCATTATCCATCCAT 59.992 47.826 0.00 0.00 0.00 3.41
706 783 4.583871 GTGACTCCCATTATCCATCCATC 58.416 47.826 0.00 0.00 0.00 3.51
707 784 4.288105 GTGACTCCCATTATCCATCCATCT 59.712 45.833 0.00 0.00 0.00 2.90
708 785 5.485353 GTGACTCCCATTATCCATCCATCTA 59.515 44.000 0.00 0.00 0.00 1.98
709 786 5.485353 TGACTCCCATTATCCATCCATCTAC 59.515 44.000 0.00 0.00 0.00 2.59
710 787 5.669857 ACTCCCATTATCCATCCATCTACT 58.330 41.667 0.00 0.00 0.00 2.57
711 788 5.723887 ACTCCCATTATCCATCCATCTACTC 59.276 44.000 0.00 0.00 0.00 2.59
712 789 5.664665 TCCCATTATCCATCCATCTACTCA 58.335 41.667 0.00 0.00 0.00 3.41
722 799 8.586879 TCCATCCATCTACTCATTCTATAGTG 57.413 38.462 0.00 0.00 0.00 2.74
738 815 6.999950 TCTATAGTGGACAAGTTAAGCAACA 58.000 36.000 0.00 0.00 37.10 3.33
753 830 0.868406 CAACAGAAACGGGACAGCTC 59.132 55.000 0.00 0.00 0.00 4.09
757 834 0.608640 AGAAACGGGACAGCTCGAAT 59.391 50.000 0.00 0.00 41.67 3.34
780 857 3.426568 GCAAGCACGGCTGTCTCC 61.427 66.667 0.00 0.00 39.62 3.71
805 882 0.318955 GATGCACAACAACCAGCACC 60.319 55.000 0.00 0.00 40.14 5.01
811 888 2.360483 CACAACAACCAGCACCACATTA 59.640 45.455 0.00 0.00 0.00 1.90
812 889 2.360801 ACAACAACCAGCACCACATTAC 59.639 45.455 0.00 0.00 0.00 1.89
813 890 2.356665 ACAACCAGCACCACATTACA 57.643 45.000 0.00 0.00 0.00 2.41
822 912 5.406175 CCAGCACCACATTACATTTTTCTTG 59.594 40.000 0.00 0.00 0.00 3.02
973 1074 5.061853 CCATCAGAGAAGAGAGAGAGAGAG 58.938 50.000 0.00 0.00 0.00 3.20
978 1079 4.653341 AGAGAAGAGAGAGAGAGAGGAGAG 59.347 50.000 0.00 0.00 0.00 3.20
990 1091 2.574399 GGAGAGCGTCCACACTCC 59.426 66.667 3.41 0.00 46.10 3.85
1479 1604 2.359850 GCCAACATGGTCGCCTCA 60.360 61.111 0.00 0.00 40.46 3.86
1763 1888 3.891049 AGCTTCTTCCTCTCTCTCTCTC 58.109 50.000 0.00 0.00 0.00 3.20
1764 1889 3.525199 AGCTTCTTCCTCTCTCTCTCTCT 59.475 47.826 0.00 0.00 0.00 3.10
1768 1893 4.624913 TCTTCCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
1770 1895 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
2187 2312 5.710567 TCTCGTCTCCATCTGTTTTCTTCTA 59.289 40.000 0.00 0.00 0.00 2.10
2189 2314 4.865365 CGTCTCCATCTGTTTTCTTCTACC 59.135 45.833 0.00 0.00 0.00 3.18
2190 2315 5.336849 CGTCTCCATCTGTTTTCTTCTACCT 60.337 44.000 0.00 0.00 0.00 3.08
2192 2317 6.019748 TCTCCATCTGTTTTCTTCTACCTCT 58.980 40.000 0.00 0.00 0.00 3.69
2195 2320 5.877564 CCATCTGTTTTCTTCTACCTCTTCC 59.122 44.000 0.00 0.00 0.00 3.46
2226 2356 5.830900 GCAAGAAGCTAACCTCGTATATG 57.169 43.478 0.00 0.00 41.15 1.78
2227 2357 4.150804 GCAAGAAGCTAACCTCGTATATGC 59.849 45.833 0.00 0.00 41.15 3.14
2228 2358 5.289595 CAAGAAGCTAACCTCGTATATGCA 58.710 41.667 0.00 0.00 0.00 3.96
2365 2499 3.123620 CAGCCGGAGCAACTGAGC 61.124 66.667 5.05 0.00 43.56 4.26
2366 2500 4.400961 AGCCGGAGCAACTGAGCC 62.401 66.667 5.05 0.00 43.56 4.70
2434 2568 0.389948 AGCTAGCGTGTTGGCAGTAC 60.390 55.000 9.55 0.00 34.64 2.73
2458 2599 3.000819 TCGTGTCCATCCGGCCTT 61.001 61.111 0.00 0.00 0.00 4.35
2459 2600 2.511600 CGTGTCCATCCGGCCTTC 60.512 66.667 0.00 0.00 0.00 3.46
2549 2706 7.546667 TCAATTATTACTCCTTGTCACCGTTAC 59.453 37.037 0.00 0.00 0.00 2.50
2563 2720 4.681025 TCACCGTTACTGTTGTCGAATTAC 59.319 41.667 0.00 0.00 0.00 1.89
2639 2796 2.550830 AAACCGCTGTGAGTGAGAAT 57.449 45.000 0.00 0.00 0.00 2.40
2656 2813 3.319755 AGAATTGCTGCAATTTGGAACG 58.680 40.909 33.57 0.00 43.05 3.95
2658 2815 2.593346 TTGCTGCAATTTGGAACGTT 57.407 40.000 11.69 0.00 0.00 3.99
2659 2816 3.717400 TTGCTGCAATTTGGAACGTTA 57.283 38.095 11.69 0.00 0.00 3.18
2660 2817 3.717400 TGCTGCAATTTGGAACGTTAA 57.283 38.095 0.00 0.00 0.00 2.01
2661 2818 4.250116 TGCTGCAATTTGGAACGTTAAT 57.750 36.364 0.00 0.00 0.00 1.40
2662 2819 4.626042 TGCTGCAATTTGGAACGTTAATT 58.374 34.783 0.00 0.74 0.00 1.40
2663 2820 5.053145 TGCTGCAATTTGGAACGTTAATTT 58.947 33.333 0.00 0.00 0.00 1.82
2667 2824 8.227119 GCTGCAATTTGGAACGTTAATTTATTT 58.773 29.630 0.00 0.00 0.00 1.40
2695 2852 0.663867 TGTGATGCATGCGTGTTTGC 60.664 50.000 19.18 2.55 39.33 3.68
2697 2854 0.387494 TGATGCATGCGTGTTTGCTG 60.387 50.000 19.18 0.00 39.60 4.41
2703 2860 2.050985 GCGTGTTTGCTGGAGTGC 60.051 61.111 0.00 0.00 0.00 4.40
2711 2868 1.834856 TTGCTGGAGTGCTGCTAGCT 61.835 55.000 17.23 0.00 42.97 3.32
2712 2869 1.078567 GCTGGAGTGCTGCTAGCTT 60.079 57.895 17.23 0.00 42.97 3.74
2713 2870 0.176680 GCTGGAGTGCTGCTAGCTTA 59.823 55.000 17.23 0.00 42.97 3.09
2714 2871 1.202627 GCTGGAGTGCTGCTAGCTTAT 60.203 52.381 17.23 0.00 42.97 1.73
2742 2899 5.279708 GCTGGCTATCCTTGTCAGTGTATAT 60.280 44.000 0.00 0.00 39.16 0.86
2743 2900 6.742644 GCTGGCTATCCTTGTCAGTGTATATT 60.743 42.308 0.00 0.00 39.16 1.28
2744 2901 7.525526 GCTGGCTATCCTTGTCAGTGTATATTA 60.526 40.741 0.00 0.00 39.16 0.98
2745 2902 8.435931 TGGCTATCCTTGTCAGTGTATATTAT 57.564 34.615 0.00 0.00 0.00 1.28
2746 2903 8.314021 TGGCTATCCTTGTCAGTGTATATTATG 58.686 37.037 0.00 0.00 0.00 1.90
2747 2904 7.766278 GGCTATCCTTGTCAGTGTATATTATGG 59.234 40.741 0.00 0.00 0.00 2.74
2748 2905 7.278868 GCTATCCTTGTCAGTGTATATTATGGC 59.721 40.741 0.00 0.00 0.00 4.40
2749 2906 5.865085 TCCTTGTCAGTGTATATTATGGCC 58.135 41.667 0.00 0.00 0.00 5.36
2750 2907 5.606749 TCCTTGTCAGTGTATATTATGGCCT 59.393 40.000 3.32 0.00 0.00 5.19
2751 2908 5.702670 CCTTGTCAGTGTATATTATGGCCTG 59.297 44.000 3.32 0.00 0.00 4.85
2752 2909 5.887214 TGTCAGTGTATATTATGGCCTGT 57.113 39.130 3.32 0.00 0.00 4.00
2753 2910 5.853936 TGTCAGTGTATATTATGGCCTGTC 58.146 41.667 3.32 0.00 0.00 3.51
2754 2911 5.602561 TGTCAGTGTATATTATGGCCTGTCT 59.397 40.000 3.32 0.00 0.00 3.41
2755 2912 6.780522 TGTCAGTGTATATTATGGCCTGTCTA 59.219 38.462 3.32 0.00 0.00 2.59
2756 2913 7.454694 TGTCAGTGTATATTATGGCCTGTCTAT 59.545 37.037 3.32 0.00 0.00 1.98
2757 2914 8.967918 GTCAGTGTATATTATGGCCTGTCTATA 58.032 37.037 3.32 0.00 0.00 1.31
2758 2915 9.715119 TCAGTGTATATTATGGCCTGTCTATAT 57.285 33.333 3.32 3.29 0.00 0.86
2765 2922 9.896645 ATATTATGGCCTGTCTATATTTGTCAG 57.103 33.333 3.32 0.00 0.00 3.51
2766 2923 5.636903 ATGGCCTGTCTATATTTGTCAGT 57.363 39.130 3.32 0.00 0.00 3.41
2767 2924 4.769688 TGGCCTGTCTATATTTGTCAGTG 58.230 43.478 3.32 0.00 0.00 3.66
2768 2925 4.130118 GGCCTGTCTATATTTGTCAGTGG 58.870 47.826 0.00 0.00 0.00 4.00
2769 2926 4.384208 GGCCTGTCTATATTTGTCAGTGGT 60.384 45.833 0.00 0.00 0.00 4.16
2770 2927 5.163343 GGCCTGTCTATATTTGTCAGTGGTA 60.163 44.000 0.00 0.00 0.00 3.25
2771 2928 6.464465 GGCCTGTCTATATTTGTCAGTGGTAT 60.464 42.308 0.00 0.00 0.00 2.73
2772 2929 7.256190 GGCCTGTCTATATTTGTCAGTGGTATA 60.256 40.741 0.00 0.00 0.00 1.47
2773 2930 8.314751 GCCTGTCTATATTTGTCAGTGGTATAT 58.685 37.037 0.00 0.00 0.00 0.86
2774 2931 9.645059 CCTGTCTATATTTGTCAGTGGTATATG 57.355 37.037 0.00 0.00 0.00 1.78
2780 2937 2.917933 TGTCAGTGGTATATGGCTTGC 58.082 47.619 0.00 0.00 0.00 4.01
2790 2947 2.584835 TATGGCTTGCCTTTGTCTGT 57.415 45.000 13.18 0.00 0.00 3.41
2819 2976 6.619446 GCAATCATGTTTATCTATCCTGCGTC 60.619 42.308 0.00 0.00 0.00 5.19
2820 2977 5.791336 TCATGTTTATCTATCCTGCGTCT 57.209 39.130 0.00 0.00 0.00 4.18
2822 2979 3.717707 TGTTTATCTATCCTGCGTCTGC 58.282 45.455 0.00 0.00 43.20 4.26
2869 3026 0.607489 CTTCTGGTGGCTTGGAGTGG 60.607 60.000 0.00 0.00 0.00 4.00
2870 3027 1.059584 TTCTGGTGGCTTGGAGTGGA 61.060 55.000 0.00 0.00 0.00 4.02
2871 3028 1.002868 CTGGTGGCTTGGAGTGGAG 60.003 63.158 0.00 0.00 0.00 3.86
2872 3029 1.770110 TGGTGGCTTGGAGTGGAGT 60.770 57.895 0.00 0.00 0.00 3.85
2873 3030 1.302832 GGTGGCTTGGAGTGGAGTG 60.303 63.158 0.00 0.00 0.00 3.51
2874 3031 1.451936 GTGGCTTGGAGTGGAGTGT 59.548 57.895 0.00 0.00 0.00 3.55
2875 3032 0.886490 GTGGCTTGGAGTGGAGTGTG 60.886 60.000 0.00 0.00 0.00 3.82
2877 3034 0.886490 GGCTTGGAGTGGAGTGTGTG 60.886 60.000 0.00 0.00 0.00 3.82
2878 3035 1.510480 GCTTGGAGTGGAGTGTGTGC 61.510 60.000 0.00 0.00 0.00 4.57
2880 3037 1.344438 CTTGGAGTGGAGTGTGTGCTA 59.656 52.381 0.00 0.00 0.00 3.49
2881 3038 1.419381 TGGAGTGGAGTGTGTGCTAA 58.581 50.000 0.00 0.00 0.00 3.09
2882 3039 1.977854 TGGAGTGGAGTGTGTGCTAAT 59.022 47.619 0.00 0.00 0.00 1.73
2883 3040 2.289631 TGGAGTGGAGTGTGTGCTAATG 60.290 50.000 0.00 0.00 0.00 1.90
2884 3041 2.028112 GGAGTGGAGTGTGTGCTAATGA 60.028 50.000 0.00 0.00 0.00 2.57
2885 3042 3.369892 GGAGTGGAGTGTGTGCTAATGAT 60.370 47.826 0.00 0.00 0.00 2.45
2886 3043 4.256920 GAGTGGAGTGTGTGCTAATGATT 58.743 43.478 0.00 0.00 0.00 2.57
2887 3044 4.005650 AGTGGAGTGTGTGCTAATGATTG 58.994 43.478 0.00 0.00 0.00 2.67
2888 3045 2.749076 TGGAGTGTGTGCTAATGATTGC 59.251 45.455 0.00 0.00 0.00 3.56
2909 3066 5.431765 TGCTTCTGGGATTGATTAAGAGAC 58.568 41.667 0.00 0.00 0.00 3.36
2915 3072 2.872858 GGATTGATTAAGAGACGTGGCC 59.127 50.000 0.00 0.00 0.00 5.36
2927 3084 1.241315 ACGTGGCCTGTTAATGGTGC 61.241 55.000 3.32 0.00 0.00 5.01
2928 3085 1.890174 GTGGCCTGTTAATGGTGCC 59.110 57.895 3.32 0.00 42.49 5.01
2929 3086 1.304879 TGGCCTGTTAATGGTGCCC 60.305 57.895 3.32 0.00 41.46 5.36
2930 3087 1.000359 GGCCTGTTAATGGTGCCCT 60.000 57.895 0.00 0.00 36.07 5.19
2931 3088 0.257616 GGCCTGTTAATGGTGCCCTA 59.742 55.000 0.00 0.00 36.07 3.53
2932 3089 1.341581 GGCCTGTTAATGGTGCCCTAA 60.342 52.381 0.00 0.00 36.07 2.69
2933 3090 2.666317 GCCTGTTAATGGTGCCCTAAT 58.334 47.619 0.50 0.00 0.00 1.73
2934 3091 2.623416 GCCTGTTAATGGTGCCCTAATC 59.377 50.000 0.50 0.00 0.00 1.75
2935 3092 3.897239 CCTGTTAATGGTGCCCTAATCA 58.103 45.455 0.00 0.00 0.00 2.57
2936 3093 4.277476 CCTGTTAATGGTGCCCTAATCAA 58.723 43.478 0.00 0.00 0.00 2.57
2937 3094 4.097892 CCTGTTAATGGTGCCCTAATCAAC 59.902 45.833 0.00 0.00 0.00 3.18
2938 3095 4.667573 TGTTAATGGTGCCCTAATCAACA 58.332 39.130 0.00 0.00 35.39 3.33
2939 3096 4.704540 TGTTAATGGTGCCCTAATCAACAG 59.295 41.667 0.00 0.00 34.28 3.16
2940 3097 3.737559 AATGGTGCCCTAATCAACAGA 57.262 42.857 0.00 0.00 34.28 3.41
2941 3098 3.737559 ATGGTGCCCTAATCAACAGAA 57.262 42.857 0.00 0.00 34.28 3.02
2942 3099 3.071874 TGGTGCCCTAATCAACAGAAG 57.928 47.619 0.00 0.00 0.00 2.85
2943 3100 2.642311 TGGTGCCCTAATCAACAGAAGA 59.358 45.455 0.00 0.00 0.00 2.87
2944 3101 3.073798 TGGTGCCCTAATCAACAGAAGAA 59.926 43.478 0.00 0.00 0.00 2.52
2945 3102 4.079253 GGTGCCCTAATCAACAGAAGAAA 58.921 43.478 0.00 0.00 0.00 2.52
2946 3103 4.522789 GGTGCCCTAATCAACAGAAGAAAA 59.477 41.667 0.00 0.00 0.00 2.29
2947 3104 5.185828 GGTGCCCTAATCAACAGAAGAAAAT 59.814 40.000 0.00 0.00 0.00 1.82
2948 3105 6.095377 GTGCCCTAATCAACAGAAGAAAATG 58.905 40.000 0.00 0.00 0.00 2.32
2949 3106 6.009589 TGCCCTAATCAACAGAAGAAAATGA 58.990 36.000 0.00 0.00 0.00 2.57
2950 3107 6.493115 TGCCCTAATCAACAGAAGAAAATGAA 59.507 34.615 0.00 0.00 0.00 2.57
2951 3108 7.015098 TGCCCTAATCAACAGAAGAAAATGAAA 59.985 33.333 0.00 0.00 0.00 2.69
2952 3109 8.037166 GCCCTAATCAACAGAAGAAAATGAAAT 58.963 33.333 0.00 0.00 0.00 2.17
2953 3110 9.362539 CCCTAATCAACAGAAGAAAATGAAATG 57.637 33.333 0.00 0.00 0.00 2.32
2971 3128 9.643693 AATGAAATGATGTCCTAATCAACAAAC 57.356 29.630 0.00 0.00 39.90 2.93
2972 3129 8.175925 TGAAATGATGTCCTAATCAACAAACA 57.824 30.769 0.00 0.00 39.90 2.83
2973 3130 8.081633 TGAAATGATGTCCTAATCAACAAACAC 58.918 33.333 0.00 0.00 39.90 3.32
2974 3131 7.523293 AATGATGTCCTAATCAACAAACACA 57.477 32.000 0.00 0.00 39.90 3.72
2975 3132 7.707624 ATGATGTCCTAATCAACAAACACAT 57.292 32.000 0.00 0.00 39.90 3.21
2976 3133 6.912082 TGATGTCCTAATCAACAAACACATG 58.088 36.000 0.00 0.00 33.63 3.21
2977 3134 5.119931 TGTCCTAATCAACAAACACATGC 57.880 39.130 0.00 0.00 0.00 4.06
2978 3135 4.826733 TGTCCTAATCAACAAACACATGCT 59.173 37.500 0.00 0.00 0.00 3.79
2979 3136 6.000840 TGTCCTAATCAACAAACACATGCTA 58.999 36.000 0.00 0.00 0.00 3.49
2980 3137 6.072728 TGTCCTAATCAACAAACACATGCTAC 60.073 38.462 0.00 0.00 0.00 3.58
2981 3138 6.000840 TCCTAATCAACAAACACATGCTACA 58.999 36.000 0.00 0.00 0.00 2.74
3049 3224 1.059584 TCCACCAGGCTTTGTCTCCA 61.060 55.000 0.00 0.00 33.74 3.86
3053 3228 1.455849 CAGGCTTTGTCTCCACCCA 59.544 57.895 0.00 0.00 0.00 4.51
3054 3229 0.890996 CAGGCTTTGTCTCCACCCAC 60.891 60.000 0.00 0.00 0.00 4.61
3055 3230 1.603739 GGCTTTGTCTCCACCCACC 60.604 63.158 0.00 0.00 0.00 4.61
3075 3250 2.387445 GCGCACGCTTATCCACACA 61.387 57.895 7.96 0.00 38.26 3.72
3076 3251 1.419922 CGCACGCTTATCCACACAC 59.580 57.895 0.00 0.00 0.00 3.82
3077 3252 1.288419 CGCACGCTTATCCACACACA 61.288 55.000 0.00 0.00 0.00 3.72
3078 3253 0.443869 GCACGCTTATCCACACACAG 59.556 55.000 0.00 0.00 0.00 3.66
3079 3254 0.443869 CACGCTTATCCACACACAGC 59.556 55.000 0.00 0.00 0.00 4.40
3080 3255 0.673644 ACGCTTATCCACACACAGCC 60.674 55.000 0.00 0.00 0.00 4.85
3081 3256 0.391661 CGCTTATCCACACACAGCCT 60.392 55.000 0.00 0.00 0.00 4.58
3082 3257 1.089920 GCTTATCCACACACAGCCTG 58.910 55.000 0.00 0.00 0.00 4.85
3083 3258 1.339055 GCTTATCCACACACAGCCTGA 60.339 52.381 0.00 0.00 0.00 3.86
3084 3259 2.875672 GCTTATCCACACACAGCCTGAA 60.876 50.000 0.00 0.00 0.00 3.02
3085 3260 3.614092 CTTATCCACACACAGCCTGAAT 58.386 45.455 0.00 0.00 0.00 2.57
3086 3261 1.830279 ATCCACACACAGCCTGAATG 58.170 50.000 0.00 0.00 0.00 2.67
3087 3262 0.473755 TCCACACACAGCCTGAATGT 59.526 50.000 0.00 0.00 0.00 2.71
3088 3263 1.133823 TCCACACACAGCCTGAATGTT 60.134 47.619 0.00 0.00 0.00 2.71
3089 3264 2.105649 TCCACACACAGCCTGAATGTTA 59.894 45.455 0.00 0.00 0.00 2.41
3090 3265 2.884012 CCACACACAGCCTGAATGTTAA 59.116 45.455 0.00 0.00 0.00 2.01
3091 3266 3.058016 CCACACACAGCCTGAATGTTAAG 60.058 47.826 0.00 0.00 0.00 1.85
3092 3267 3.058016 CACACACAGCCTGAATGTTAAGG 60.058 47.826 0.00 0.00 36.58 2.69
3100 3275 2.755103 CCTGAATGTTAAGGCCAACTCC 59.245 50.000 5.01 0.00 0.00 3.85
3101 3276 3.420893 CTGAATGTTAAGGCCAACTCCA 58.579 45.455 5.01 0.00 0.00 3.86
3102 3277 3.153919 TGAATGTTAAGGCCAACTCCAC 58.846 45.455 5.01 0.00 0.00 4.02
3103 3278 2.215942 ATGTTAAGGCCAACTCCACC 57.784 50.000 5.01 0.00 0.00 4.61
3104 3279 0.250553 TGTTAAGGCCAACTCCACCG 60.251 55.000 5.01 0.00 0.00 4.94
3105 3280 1.302993 TTAAGGCCAACTCCACCGC 60.303 57.895 5.01 0.00 0.00 5.68
3106 3281 3.599285 TAAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
3114 3289 4.077184 CTCCACCGCGCCACCTTA 62.077 66.667 0.00 0.00 0.00 2.69
3115 3290 3.599285 CTCCACCGCGCCACCTTAA 62.599 63.158 0.00 0.00 0.00 1.85
3116 3291 2.670251 CCACCGCGCCACCTTAAA 60.670 61.111 0.00 0.00 0.00 1.52
3117 3292 2.043980 CCACCGCGCCACCTTAAAT 61.044 57.895 0.00 0.00 0.00 1.40
3118 3293 1.136565 CACCGCGCCACCTTAAATG 59.863 57.895 0.00 0.00 0.00 2.32
3119 3294 1.003112 ACCGCGCCACCTTAAATGA 60.003 52.632 0.00 0.00 0.00 2.57
3120 3295 0.606944 ACCGCGCCACCTTAAATGAA 60.607 50.000 0.00 0.00 0.00 2.57
3121 3296 0.179174 CCGCGCCACCTTAAATGAAC 60.179 55.000 0.00 0.00 0.00 3.18
3122 3297 0.520412 CGCGCCACCTTAAATGAACG 60.520 55.000 0.00 0.00 0.00 3.95
3123 3298 0.519961 GCGCCACCTTAAATGAACGT 59.480 50.000 0.00 0.00 0.00 3.99
3124 3299 1.465187 GCGCCACCTTAAATGAACGTC 60.465 52.381 0.00 0.00 0.00 4.34
3125 3300 1.129811 CGCCACCTTAAATGAACGTCC 59.870 52.381 0.00 0.00 0.00 4.79
3126 3301 1.129811 GCCACCTTAAATGAACGTCCG 59.870 52.381 0.00 0.00 0.00 4.79
3127 3302 2.419667 CCACCTTAAATGAACGTCCGT 58.580 47.619 0.00 0.00 0.00 4.69
3128 3303 2.809696 CCACCTTAAATGAACGTCCGTT 59.190 45.455 4.52 4.52 41.54 4.44
3129 3304 3.251487 CCACCTTAAATGAACGTCCGTTT 59.749 43.478 6.52 0.00 38.60 3.60
3130 3305 4.261280 CCACCTTAAATGAACGTCCGTTTT 60.261 41.667 6.52 0.32 38.60 2.43
3131 3306 4.673311 CACCTTAAATGAACGTCCGTTTTG 59.327 41.667 6.52 0.00 38.60 2.44
3132 3307 4.336153 ACCTTAAATGAACGTCCGTTTTGT 59.664 37.500 6.52 0.00 38.60 2.83
3133 3308 4.907582 CCTTAAATGAACGTCCGTTTTGTC 59.092 41.667 6.52 0.00 38.60 3.18
3134 3309 3.343380 AAATGAACGTCCGTTTTGTCC 57.657 42.857 6.52 0.00 38.60 4.02
3135 3310 0.863144 ATGAACGTCCGTTTTGTCCG 59.137 50.000 6.52 0.00 38.60 4.79
3136 3311 1.152989 TGAACGTCCGTTTTGTCCGG 61.153 55.000 6.52 0.00 46.83 5.14
3149 3324 7.478520 CGTTTTGTCCGGATTCTATCTATTT 57.521 36.000 7.81 0.00 0.00 1.40
3150 3325 7.345192 CGTTTTGTCCGGATTCTATCTATTTG 58.655 38.462 7.81 0.00 0.00 2.32
3151 3326 7.518370 CGTTTTGTCCGGATTCTATCTATTTGG 60.518 40.741 7.81 0.00 0.00 3.28
3152 3327 5.483685 TGTCCGGATTCTATCTATTTGGG 57.516 43.478 7.81 0.00 0.00 4.12
3153 3328 4.905456 TGTCCGGATTCTATCTATTTGGGT 59.095 41.667 7.81 0.00 0.00 4.51
3154 3329 6.079336 TGTCCGGATTCTATCTATTTGGGTA 58.921 40.000 7.81 0.00 0.00 3.69
3155 3330 6.210784 TGTCCGGATTCTATCTATTTGGGTAG 59.789 42.308 7.81 0.00 0.00 3.18
3156 3331 6.436532 GTCCGGATTCTATCTATTTGGGTAGA 59.563 42.308 7.81 0.00 35.33 2.59
3157 3332 7.014449 TCCGGATTCTATCTATTTGGGTAGAA 58.986 38.462 0.00 0.00 37.52 2.10
3158 3333 7.511371 TCCGGATTCTATCTATTTGGGTAGAAA 59.489 37.037 0.00 0.00 36.91 2.52
3159 3334 8.322091 CCGGATTCTATCTATTTGGGTAGAAAT 58.678 37.037 0.00 0.00 36.91 2.17
3160 3335 9.726438 CGGATTCTATCTATTTGGGTAGAAATT 57.274 33.333 1.43 0.00 36.91 1.82
3166 3341 9.853177 CTATCTATTTGGGTAGAAATTTGGAGT 57.147 33.333 0.00 0.00 34.59 3.85
3167 3342 8.753497 ATCTATTTGGGTAGAAATTTGGAGTC 57.247 34.615 0.00 0.00 34.59 3.36
3168 3343 5.897377 ATTTGGGTAGAAATTTGGAGTCG 57.103 39.130 0.00 0.00 0.00 4.18
3169 3344 4.360951 TTGGGTAGAAATTTGGAGTCGT 57.639 40.909 0.00 0.00 0.00 4.34
3170 3345 3.670625 TGGGTAGAAATTTGGAGTCGTG 58.329 45.455 0.00 0.00 0.00 4.35
3171 3346 3.071892 TGGGTAGAAATTTGGAGTCGTGT 59.928 43.478 0.00 0.00 0.00 4.49
3172 3347 4.070009 GGGTAGAAATTTGGAGTCGTGTT 58.930 43.478 0.00 0.00 0.00 3.32
3173 3348 4.153655 GGGTAGAAATTTGGAGTCGTGTTC 59.846 45.833 0.00 0.00 0.00 3.18
3174 3349 4.143179 GGTAGAAATTTGGAGTCGTGTTCG 60.143 45.833 0.00 0.00 38.55 3.95
3175 3350 2.806244 AGAAATTTGGAGTCGTGTTCGG 59.194 45.455 0.00 0.00 37.69 4.30
3176 3351 0.872388 AATTTGGAGTCGTGTTCGGC 59.128 50.000 0.00 0.00 42.44 5.54
3177 3352 0.953960 ATTTGGAGTCGTGTTCGGCC 60.954 55.000 0.00 0.00 43.20 6.13
3178 3353 3.851845 TTGGAGTCGTGTTCGGCCG 62.852 63.158 22.12 22.12 43.20 6.13
3179 3354 4.353437 GGAGTCGTGTTCGGCCGT 62.353 66.667 27.15 1.71 43.20 5.68
3180 3355 3.103911 GAGTCGTGTTCGGCCGTG 61.104 66.667 27.15 11.17 43.20 4.94
3181 3356 3.836176 GAGTCGTGTTCGGCCGTGT 62.836 63.158 27.15 1.35 43.20 4.49
3182 3357 2.963320 GTCGTGTTCGGCCGTGTT 60.963 61.111 27.15 0.00 35.48 3.32
3183 3358 2.659244 TCGTGTTCGGCCGTGTTC 60.659 61.111 27.15 14.08 37.69 3.18
3184 3359 2.660552 CGTGTTCGGCCGTGTTCT 60.661 61.111 27.15 0.00 0.00 3.01
3185 3360 2.935955 GTGTTCGGCCGTGTTCTG 59.064 61.111 27.15 0.00 0.00 3.02
3186 3361 1.885850 GTGTTCGGCCGTGTTCTGT 60.886 57.895 27.15 0.00 0.00 3.41
3187 3362 1.885388 TGTTCGGCCGTGTTCTGTG 60.885 57.895 27.15 0.00 0.00 3.66
3188 3363 1.593209 GTTCGGCCGTGTTCTGTGA 60.593 57.895 27.15 0.00 0.00 3.58
3189 3364 0.949105 GTTCGGCCGTGTTCTGTGAT 60.949 55.000 27.15 0.00 0.00 3.06
3190 3365 0.948623 TTCGGCCGTGTTCTGTGATG 60.949 55.000 27.15 0.00 0.00 3.07
3191 3366 2.870372 GGCCGTGTTCTGTGATGC 59.130 61.111 0.00 0.00 0.00 3.91
3192 3367 2.476051 GCCGTGTTCTGTGATGCG 59.524 61.111 0.00 0.00 0.00 4.73
3193 3368 2.027073 GCCGTGTTCTGTGATGCGA 61.027 57.895 0.00 0.00 0.00 5.10
3194 3369 1.361668 GCCGTGTTCTGTGATGCGAT 61.362 55.000 0.00 0.00 0.00 4.58
3195 3370 0.371301 CCGTGTTCTGTGATGCGATG 59.629 55.000 0.00 0.00 0.00 3.84
3196 3371 0.371301 CGTGTTCTGTGATGCGATGG 59.629 55.000 0.00 0.00 0.00 3.51
3197 3372 1.442769 GTGTTCTGTGATGCGATGGT 58.557 50.000 0.00 0.00 0.00 3.55
3198 3373 1.806542 GTGTTCTGTGATGCGATGGTT 59.193 47.619 0.00 0.00 0.00 3.67
3199 3374 1.805943 TGTTCTGTGATGCGATGGTTG 59.194 47.619 0.00 0.00 0.00 3.77
3200 3375 1.806542 GTTCTGTGATGCGATGGTTGT 59.193 47.619 0.00 0.00 0.00 3.32
3201 3376 1.441738 TCTGTGATGCGATGGTTGTG 58.558 50.000 0.00 0.00 0.00 3.33
3202 3377 0.179181 CTGTGATGCGATGGTTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
3203 3378 1.226101 GTGATGCGATGGTTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
3208 3383 3.803082 CGATGGTTGTGCGCCCAG 61.803 66.667 4.18 0.00 33.39 4.45
3230 3405 4.457496 CGGACGCATCCTGGCTGT 62.457 66.667 0.00 0.00 43.73 4.40
3231 3406 2.900273 GGACGCATCCTGGCTGTA 59.100 61.111 0.00 0.00 42.45 2.74
3232 3407 1.447643 GGACGCATCCTGGCTGTAT 59.552 57.895 0.00 0.00 42.45 2.29
3233 3408 0.601311 GGACGCATCCTGGCTGTATC 60.601 60.000 0.00 0.00 42.45 2.24
3234 3409 0.390860 GACGCATCCTGGCTGTATCT 59.609 55.000 0.00 0.00 0.00 1.98
3235 3410 0.833287 ACGCATCCTGGCTGTATCTT 59.167 50.000 0.00 0.00 0.00 2.40
3236 3411 1.224075 CGCATCCTGGCTGTATCTTG 58.776 55.000 0.00 0.00 0.00 3.02
3237 3412 1.473965 CGCATCCTGGCTGTATCTTGT 60.474 52.381 0.00 0.00 0.00 3.16
3238 3413 2.216898 GCATCCTGGCTGTATCTTGTC 58.783 52.381 0.00 0.00 0.00 3.18
3239 3414 2.843701 CATCCTGGCTGTATCTTGTCC 58.156 52.381 0.00 0.00 0.00 4.02
3240 3415 1.951209 TCCTGGCTGTATCTTGTCCA 58.049 50.000 0.00 0.00 0.00 4.02
3241 3416 1.555075 TCCTGGCTGTATCTTGTCCAC 59.445 52.381 0.00 0.00 0.00 4.02
3242 3417 1.645034 CTGGCTGTATCTTGTCCACG 58.355 55.000 0.00 0.00 0.00 4.94
3243 3418 0.973632 TGGCTGTATCTTGTCCACGT 59.026 50.000 0.00 0.00 0.00 4.49
3244 3419 2.165641 CTGGCTGTATCTTGTCCACGTA 59.834 50.000 0.00 0.00 0.00 3.57
3245 3420 2.764010 TGGCTGTATCTTGTCCACGTAT 59.236 45.455 0.00 0.00 0.00 3.06
3246 3421 3.196901 TGGCTGTATCTTGTCCACGTATT 59.803 43.478 0.00 0.00 0.00 1.89
3247 3422 4.189231 GGCTGTATCTTGTCCACGTATTT 58.811 43.478 0.00 0.00 0.00 1.40
3248 3423 4.634443 GGCTGTATCTTGTCCACGTATTTT 59.366 41.667 0.00 0.00 0.00 1.82
3249 3424 5.123344 GGCTGTATCTTGTCCACGTATTTTT 59.877 40.000 0.00 0.00 0.00 1.94
3250 3425 6.248631 GCTGTATCTTGTCCACGTATTTTTC 58.751 40.000 0.00 0.00 0.00 2.29
3251 3426 6.092259 GCTGTATCTTGTCCACGTATTTTTCT 59.908 38.462 0.00 0.00 0.00 2.52
3252 3427 7.360946 GCTGTATCTTGTCCACGTATTTTTCTT 60.361 37.037 0.00 0.00 0.00 2.52
3253 3428 8.385898 TGTATCTTGTCCACGTATTTTTCTTT 57.614 30.769 0.00 0.00 0.00 2.52
3254 3429 9.491675 TGTATCTTGTCCACGTATTTTTCTTTA 57.508 29.630 0.00 0.00 0.00 1.85
3255 3430 9.750882 GTATCTTGTCCACGTATTTTTCTTTAC 57.249 33.333 0.00 0.00 0.00 2.01
3256 3431 7.789273 TCTTGTCCACGTATTTTTCTTTACA 57.211 32.000 0.00 0.00 0.00 2.41
3257 3432 8.211116 TCTTGTCCACGTATTTTTCTTTACAA 57.789 30.769 0.00 0.00 0.00 2.41
3258 3433 8.339714 TCTTGTCCACGTATTTTTCTTTACAAG 58.660 33.333 0.00 0.00 40.71 3.16
3259 3434 7.556733 TGTCCACGTATTTTTCTTTACAAGT 57.443 32.000 0.00 0.00 0.00 3.16
3260 3435 7.632721 TGTCCACGTATTTTTCTTTACAAGTC 58.367 34.615 0.00 0.00 0.00 3.01
3261 3436 7.073883 GTCCACGTATTTTTCTTTACAAGTCC 58.926 38.462 0.00 0.00 0.00 3.85
3262 3437 6.993902 TCCACGTATTTTTCTTTACAAGTCCT 59.006 34.615 0.00 0.00 0.00 3.85
3263 3438 7.499895 TCCACGTATTTTTCTTTACAAGTCCTT 59.500 33.333 0.00 0.00 0.00 3.36
3264 3439 8.776470 CCACGTATTTTTCTTTACAAGTCCTTA 58.224 33.333 0.00 0.00 0.00 2.69
3338 3513 8.927675 TTTGACTAGTAAAATAAGGCCAAAGA 57.072 30.769 5.01 0.00 0.00 2.52
3339 3514 8.927675 TTGACTAGTAAAATAAGGCCAAAGAA 57.072 30.769 5.01 0.00 0.00 2.52
3340 3515 8.927675 TGACTAGTAAAATAAGGCCAAAGAAA 57.072 30.769 5.01 0.00 0.00 2.52
3341 3516 9.357161 TGACTAGTAAAATAAGGCCAAAGAAAA 57.643 29.630 5.01 0.00 0.00 2.29
3351 3526 9.489084 AATAAGGCCAAAGAAAATAAGAACAAC 57.511 29.630 5.01 0.00 0.00 3.32
3352 3527 6.478512 AGGCCAAAGAAAATAAGAACAACA 57.521 33.333 5.01 0.00 0.00 3.33
3353 3528 6.883744 AGGCCAAAGAAAATAAGAACAACAA 58.116 32.000 5.01 0.00 0.00 2.83
3354 3529 6.986231 AGGCCAAAGAAAATAAGAACAACAAG 59.014 34.615 5.01 0.00 0.00 3.16
3355 3530 6.983890 GGCCAAAGAAAATAAGAACAACAAGA 59.016 34.615 0.00 0.00 0.00 3.02
3356 3531 7.494298 GGCCAAAGAAAATAAGAACAACAAGAA 59.506 33.333 0.00 0.00 0.00 2.52
3357 3532 9.045223 GCCAAAGAAAATAAGAACAACAAGAAT 57.955 29.630 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.901051 CTTCACCGCGCGACCCTATT 62.901 60.000 34.63 2.64 0.00 1.73
1 2 3.426117 CTTCACCGCGCGACCCTAT 62.426 63.158 34.63 6.07 0.00 2.57
2 3 4.124351 CTTCACCGCGCGACCCTA 62.124 66.667 34.63 11.35 0.00 3.53
6 7 4.072088 CCAACTTCACCGCGCGAC 62.072 66.667 34.63 0.00 0.00 5.19
11 12 2.325082 ATGACGCCAACTTCACCGC 61.325 57.895 0.00 0.00 0.00 5.68
12 13 1.227999 ACATGACGCCAACTTCACCG 61.228 55.000 0.00 0.00 0.00 4.94
13 14 0.517316 GACATGACGCCAACTTCACC 59.483 55.000 0.00 0.00 0.00 4.02
14 15 0.517316 GGACATGACGCCAACTTCAC 59.483 55.000 0.00 0.00 0.00 3.18
15 16 0.948623 CGGACATGACGCCAACTTCA 60.949 55.000 0.00 0.00 0.00 3.02
16 17 1.787847 CGGACATGACGCCAACTTC 59.212 57.895 0.00 0.00 0.00 3.01
17 18 3.966215 CGGACATGACGCCAACTT 58.034 55.556 0.00 0.00 0.00 2.66
118 121 0.038251 TCATCACACACAGGAGCGAC 60.038 55.000 0.00 0.00 0.00 5.19
172 183 2.341452 CGGCTAGGATCACGGATGA 58.659 57.895 0.00 0.00 39.83 2.92
197 208 1.343478 ACCTCACTCACCTCCCTATGG 60.343 57.143 0.00 0.00 0.00 2.74
198 209 1.759445 CACCTCACTCACCTCCCTATG 59.241 57.143 0.00 0.00 0.00 2.23
199 210 1.646447 TCACCTCACTCACCTCCCTAT 59.354 52.381 0.00 0.00 0.00 2.57
200 211 1.006043 CTCACCTCACTCACCTCCCTA 59.994 57.143 0.00 0.00 0.00 3.53
201 212 0.252012 CTCACCTCACTCACCTCCCT 60.252 60.000 0.00 0.00 0.00 4.20
203 214 0.543174 ACCTCACCTCACTCACCTCC 60.543 60.000 0.00 0.00 0.00 4.30
205 216 0.833834 CCACCTCACCTCACTCACCT 60.834 60.000 0.00 0.00 0.00 4.00
206 217 1.674057 CCACCTCACCTCACTCACC 59.326 63.158 0.00 0.00 0.00 4.02
207 218 0.832135 TCCCACCTCACCTCACTCAC 60.832 60.000 0.00 0.00 0.00 3.51
208 219 0.542938 CTCCCACCTCACCTCACTCA 60.543 60.000 0.00 0.00 0.00 3.41
209 220 0.543174 ACTCCCACCTCACCTCACTC 60.543 60.000 0.00 0.00 0.00 3.51
210 221 0.833834 CACTCCCACCTCACCTCACT 60.834 60.000 0.00 0.00 0.00 3.41
211 222 1.674057 CACTCCCACCTCACCTCAC 59.326 63.158 0.00 0.00 0.00 3.51
212 223 1.536418 CCACTCCCACCTCACCTCA 60.536 63.158 0.00 0.00 0.00 3.86
213 224 2.960688 GCCACTCCCACCTCACCTC 61.961 68.421 0.00 0.00 0.00 3.85
214 225 2.930562 GCCACTCCCACCTCACCT 60.931 66.667 0.00 0.00 0.00 4.00
215 226 3.249189 TGCCACTCCCACCTCACC 61.249 66.667 0.00 0.00 0.00 4.02
216 227 2.348998 CTGCCACTCCCACCTCAC 59.651 66.667 0.00 0.00 0.00 3.51
217 228 3.640407 GCTGCCACTCCCACCTCA 61.640 66.667 0.00 0.00 0.00 3.86
218 229 3.618780 CTGCTGCCACTCCCACCTC 62.619 68.421 0.00 0.00 0.00 3.85
219 230 3.644606 CTGCTGCCACTCCCACCT 61.645 66.667 0.00 0.00 0.00 4.00
220 231 2.490270 ATTCTGCTGCCACTCCCACC 62.490 60.000 0.00 0.00 0.00 4.61
221 232 1.001641 ATTCTGCTGCCACTCCCAC 60.002 57.895 0.00 0.00 0.00 4.61
222 233 1.300963 GATTCTGCTGCCACTCCCA 59.699 57.895 0.00 0.00 0.00 4.37
223 234 0.106819 ATGATTCTGCTGCCACTCCC 60.107 55.000 0.00 0.00 0.00 4.30
224 235 1.404391 CAATGATTCTGCTGCCACTCC 59.596 52.381 0.00 0.00 0.00 3.85
225 236 1.202268 GCAATGATTCTGCTGCCACTC 60.202 52.381 0.00 0.00 36.84 3.51
226 237 0.815734 GCAATGATTCTGCTGCCACT 59.184 50.000 0.00 0.00 36.84 4.00
227 238 3.340727 GCAATGATTCTGCTGCCAC 57.659 52.632 0.00 0.00 36.84 5.01
249 260 2.173669 CCAAGGGTGCAGCGTATCG 61.174 63.158 12.00 3.80 0.00 2.92
250 261 1.819632 CCCAAGGGTGCAGCGTATC 60.820 63.158 12.00 0.00 0.00 2.24
251 262 1.847798 TTCCCAAGGGTGCAGCGTAT 61.848 55.000 12.00 0.00 36.47 3.06
252 263 2.463589 CTTCCCAAGGGTGCAGCGTA 62.464 60.000 12.00 0.00 36.47 4.42
253 264 3.850098 CTTCCCAAGGGTGCAGCGT 62.850 63.158 10.24 7.69 36.47 5.07
255 266 0.827507 TTTCTTCCCAAGGGTGCAGC 60.828 55.000 7.55 7.55 36.47 5.25
267 295 0.253327 ATCTCGGCCACCTTTCTTCC 59.747 55.000 2.24 0.00 0.00 3.46
268 296 1.373570 CATCTCGGCCACCTTTCTTC 58.626 55.000 2.24 0.00 0.00 2.87
269 297 0.035056 CCATCTCGGCCACCTTTCTT 60.035 55.000 2.24 0.00 0.00 2.52
270 298 1.604378 CCATCTCGGCCACCTTTCT 59.396 57.895 2.24 0.00 0.00 2.52
306 343 2.095692 CGTCGCATGGACATTTTCATGA 59.904 45.455 4.20 0.00 46.42 3.07
308 345 2.083774 ACGTCGCATGGACATTTTCAT 58.916 42.857 12.80 0.00 46.42 2.57
314 352 2.595124 TTATGACGTCGCATGGACAT 57.405 45.000 11.62 0.00 46.42 3.06
316 354 3.060272 CAGAATTATGACGTCGCATGGAC 60.060 47.826 11.62 0.00 42.48 4.02
318 356 2.866156 ACAGAATTATGACGTCGCATGG 59.134 45.455 11.62 0.00 0.00 3.66
338 376 8.488979 TGTTTTACGAGTAACTTACGTAGAAC 57.511 34.615 18.24 18.24 46.91 3.01
343 381 9.410556 ACAATATGTTTTACGAGTAACTTACGT 57.589 29.630 0.00 0.00 42.70 3.57
381 452 9.801873 CAAACAAGTCCCGATGAAATTATAAAT 57.198 29.630 0.00 0.00 0.00 1.40
382 453 8.798402 ACAAACAAGTCCCGATGAAATTATAAA 58.202 29.630 0.00 0.00 0.00 1.40
383 454 8.240682 CACAAACAAGTCCCGATGAAATTATAA 58.759 33.333 0.00 0.00 0.00 0.98
384 455 7.608376 TCACAAACAAGTCCCGATGAAATTATA 59.392 33.333 0.00 0.00 0.00 0.98
385 456 6.432783 TCACAAACAAGTCCCGATGAAATTAT 59.567 34.615 0.00 0.00 0.00 1.28
386 457 5.765677 TCACAAACAAGTCCCGATGAAATTA 59.234 36.000 0.00 0.00 0.00 1.40
387 458 4.582656 TCACAAACAAGTCCCGATGAAATT 59.417 37.500 0.00 0.00 0.00 1.82
388 459 4.023193 GTCACAAACAAGTCCCGATGAAAT 60.023 41.667 0.00 0.00 0.00 2.17
389 460 3.314080 GTCACAAACAAGTCCCGATGAAA 59.686 43.478 0.00 0.00 0.00 2.69
390 461 2.875933 GTCACAAACAAGTCCCGATGAA 59.124 45.455 0.00 0.00 0.00 2.57
391 462 2.489971 GTCACAAACAAGTCCCGATGA 58.510 47.619 0.00 0.00 0.00 2.92
392 463 1.535462 GGTCACAAACAAGTCCCGATG 59.465 52.381 0.00 0.00 0.00 3.84
393 464 1.544759 GGGTCACAAACAAGTCCCGAT 60.545 52.381 0.00 0.00 0.00 4.18
394 465 0.179040 GGGTCACAAACAAGTCCCGA 60.179 55.000 0.00 0.00 0.00 5.14
395 466 0.179029 AGGGTCACAAACAAGTCCCG 60.179 55.000 0.00 0.00 39.78 5.14
396 467 1.681264 CAAGGGTCACAAACAAGTCCC 59.319 52.381 0.00 0.00 35.56 4.46
397 468 2.650322 TCAAGGGTCACAAACAAGTCC 58.350 47.619 0.00 0.00 0.00 3.85
447 518 7.176515 AGTTGTCATTATCACCAAATGCTTACA 59.823 33.333 0.00 0.00 34.89 2.41
475 550 6.085555 TCCAGCCTTACAATCGAAGTATAG 57.914 41.667 0.00 0.00 0.00 1.31
476 551 6.474140 TTCCAGCCTTACAATCGAAGTATA 57.526 37.500 0.00 0.00 0.00 1.47
477 552 5.353394 TTCCAGCCTTACAATCGAAGTAT 57.647 39.130 0.00 0.00 0.00 2.12
478 553 4.811969 TTCCAGCCTTACAATCGAAGTA 57.188 40.909 0.00 0.00 0.00 2.24
520 595 7.660030 ATGAATCATTAGGGTTTTAGTTGGG 57.340 36.000 0.00 0.00 0.00 4.12
544 619 0.404040 GTTGTGGGAGGGTGGATGAA 59.596 55.000 0.00 0.00 0.00 2.57
545 620 1.497309 GGTTGTGGGAGGGTGGATGA 61.497 60.000 0.00 0.00 0.00 2.92
546 621 1.000896 GGTTGTGGGAGGGTGGATG 60.001 63.158 0.00 0.00 0.00 3.51
547 622 2.602676 CGGTTGTGGGAGGGTGGAT 61.603 63.158 0.00 0.00 0.00 3.41
548 623 3.246112 CGGTTGTGGGAGGGTGGA 61.246 66.667 0.00 0.00 0.00 4.02
587 662 4.040584 CAGGGACATGAGATGAGATGACAT 59.959 45.833 0.00 0.00 0.00 3.06
599 674 1.271543 TGCTTTGGTCAGGGACATGAG 60.272 52.381 0.00 0.00 33.68 2.90
609 684 4.391830 GTGTTCGAGAATATGCTTTGGTCA 59.608 41.667 0.00 0.00 0.00 4.02
656 733 5.532025 AGCTAGTTTTATTGCGAACTGAC 57.468 39.130 0.00 0.00 36.79 3.51
664 741 6.258068 AGTCACGGATAAGCTAGTTTTATTGC 59.742 38.462 0.00 0.00 0.00 3.56
672 749 2.308690 GGGAGTCACGGATAAGCTAGT 58.691 52.381 0.00 0.00 0.00 2.57
705 782 8.824756 AACTTGTCCACTATAGAATGAGTAGA 57.175 34.615 6.78 0.00 0.00 2.59
708 785 7.982354 GCTTAACTTGTCCACTATAGAATGAGT 59.018 37.037 6.78 0.23 0.00 3.41
709 786 7.981789 TGCTTAACTTGTCCACTATAGAATGAG 59.018 37.037 6.78 0.00 0.00 2.90
710 787 7.847096 TGCTTAACTTGTCCACTATAGAATGA 58.153 34.615 6.78 0.00 0.00 2.57
711 788 8.391106 GTTGCTTAACTTGTCCACTATAGAATG 58.609 37.037 6.78 0.00 0.00 2.67
712 789 8.100791 TGTTGCTTAACTTGTCCACTATAGAAT 58.899 33.333 6.78 0.00 0.00 2.40
722 799 4.279659 CGTTTCTGTTGCTTAACTTGTCC 58.720 43.478 0.00 0.00 0.00 4.02
738 815 0.608640 ATTCGAGCTGTCCCGTTTCT 59.391 50.000 0.00 0.00 0.00 2.52
753 830 1.059369 CGTGCTTGCTTCCGATTCG 59.941 57.895 0.00 0.00 0.00 3.34
757 834 4.314440 AGCCGTGCTTGCTTCCGA 62.314 61.111 0.00 0.00 33.89 4.55
780 857 0.317770 GGTTGTTGTGCATCGGTGTG 60.318 55.000 0.00 0.00 0.00 3.82
811 888 9.816354 ACTGTAATAAAAGTGCAAGAAAAATGT 57.184 25.926 0.00 0.00 0.00 2.71
813 890 9.260002 CCACTGTAATAAAAGTGCAAGAAAAAT 57.740 29.630 0.00 0.00 42.03 1.82
822 912 4.783764 AAGGCCACTGTAATAAAAGTGC 57.216 40.909 5.01 0.00 42.03 4.40
984 1085 4.025858 ATGGCTGCTGCGGAGTGT 62.026 61.111 13.72 0.00 40.82 3.55
1617 1742 1.970917 GCACCATGAAGACGGCGAAG 61.971 60.000 16.62 0.00 0.00 3.79
2156 2281 3.133691 CAGATGGAGACGAGAGAGAGAG 58.866 54.545 0.00 0.00 0.00 3.20
2157 2282 2.503765 ACAGATGGAGACGAGAGAGAGA 59.496 50.000 0.00 0.00 0.00 3.10
2158 2283 2.917933 ACAGATGGAGACGAGAGAGAG 58.082 52.381 0.00 0.00 0.00 3.20
2159 2284 3.358111 AACAGATGGAGACGAGAGAGA 57.642 47.619 0.00 0.00 0.00 3.10
2160 2285 4.157656 AGAAAACAGATGGAGACGAGAGAG 59.842 45.833 0.00 0.00 0.00 3.20
2161 2286 4.082845 AGAAAACAGATGGAGACGAGAGA 58.917 43.478 0.00 0.00 0.00 3.10
2162 2287 4.448537 AGAAAACAGATGGAGACGAGAG 57.551 45.455 0.00 0.00 0.00 3.20
2163 2288 4.524714 AGAAGAAAACAGATGGAGACGAGA 59.475 41.667 0.00 0.00 0.00 4.04
2164 2289 4.815269 AGAAGAAAACAGATGGAGACGAG 58.185 43.478 0.00 0.00 0.00 4.18
2165 2290 4.873746 AGAAGAAAACAGATGGAGACGA 57.126 40.909 0.00 0.00 0.00 4.20
2187 2312 0.767375 TGCTTGCAAGAGGAAGAGGT 59.233 50.000 30.39 0.00 45.07 3.85
2189 2314 2.775890 TCTTGCTTGCAAGAGGAAGAG 58.224 47.619 30.39 15.54 45.41 2.85
2192 2317 1.610522 GCTTCTTGCTTGCAAGAGGAA 59.389 47.619 35.28 23.91 41.56 3.36
2227 2357 2.361789 TCCACTGCATGTCATGTCATG 58.638 47.619 23.43 23.43 45.37 3.07
2228 2358 2.793288 TCCACTGCATGTCATGTCAT 57.207 45.000 14.26 0.00 0.00 3.06
2372 2506 0.824182 TAAATTATTGGCCGGCCGGG 60.824 55.000 43.31 26.06 39.42 5.73
2434 2568 1.142748 GGATGGACACGAGGAGCAG 59.857 63.158 0.00 0.00 0.00 4.24
2458 2599 1.074084 AGAGAGGACACTGGAACGAGA 59.926 52.381 0.00 0.00 0.00 4.04
2459 2600 1.201181 CAGAGAGGACACTGGAACGAG 59.799 57.143 0.00 0.00 32.55 4.18
2490 2631 1.613925 TGGTGGTCTTTCTCTCACTCG 59.386 52.381 0.00 0.00 0.00 4.18
2574 2731 5.686753 TCCAACACCAACACTAATAACAGT 58.313 37.500 0.00 0.00 0.00 3.55
2575 2732 6.349280 CCATCCAACACCAACACTAATAACAG 60.349 42.308 0.00 0.00 0.00 3.16
2576 2733 5.475220 CCATCCAACACCAACACTAATAACA 59.525 40.000 0.00 0.00 0.00 2.41
2577 2734 5.708230 TCCATCCAACACCAACACTAATAAC 59.292 40.000 0.00 0.00 0.00 1.89
2578 2735 5.882040 TCCATCCAACACCAACACTAATAA 58.118 37.500 0.00 0.00 0.00 1.40
2579 2736 5.506730 TCCATCCAACACCAACACTAATA 57.493 39.130 0.00 0.00 0.00 0.98
2580 2737 4.380843 TCCATCCAACACCAACACTAAT 57.619 40.909 0.00 0.00 0.00 1.73
2639 2796 2.593346 AACGTTCCAAATTGCAGCAA 57.407 40.000 11.07 11.07 0.00 3.91
2661 2818 9.258826 GCATGCATCACACCATAAATAAATAAA 57.741 29.630 14.21 0.00 0.00 1.40
2662 2819 7.594386 CGCATGCATCACACCATAAATAAATAA 59.406 33.333 19.57 0.00 0.00 1.40
2663 2820 7.083230 CGCATGCATCACACCATAAATAAATA 58.917 34.615 19.57 0.00 0.00 1.40
2667 2824 3.882288 ACGCATGCATCACACCATAAATA 59.118 39.130 19.57 0.00 0.00 1.40
2674 2831 0.039256 AAACACGCATGCATCACACC 60.039 50.000 19.57 0.00 0.00 4.16
2695 2852 2.547642 GGATAAGCTAGCAGCACTCCAG 60.548 54.545 18.83 0.00 45.56 3.86
2697 2854 1.691434 AGGATAAGCTAGCAGCACTCC 59.309 52.381 18.83 14.41 45.56 3.85
2703 2860 1.877258 GCCAGCAGGATAAGCTAGCAG 60.877 57.143 18.83 0.00 44.42 4.24
2711 2868 3.048600 ACAAGGATAGCCAGCAGGATAA 58.951 45.455 0.00 0.00 39.63 1.75
2712 2869 2.634940 GACAAGGATAGCCAGCAGGATA 59.365 50.000 0.00 0.00 40.67 2.59
2713 2870 1.419387 GACAAGGATAGCCAGCAGGAT 59.581 52.381 0.00 0.00 36.89 3.24
2714 2871 0.833287 GACAAGGATAGCCAGCAGGA 59.167 55.000 0.00 0.00 36.89 3.86
2742 2899 6.992123 CACTGACAAATATAGACAGGCCATAA 59.008 38.462 5.01 0.00 33.97 1.90
2743 2900 6.464322 CCACTGACAAATATAGACAGGCCATA 60.464 42.308 5.01 0.00 33.97 2.74
2744 2901 5.371526 CACTGACAAATATAGACAGGCCAT 58.628 41.667 5.01 0.00 33.97 4.40
2745 2902 4.384098 CCACTGACAAATATAGACAGGCCA 60.384 45.833 5.01 0.00 33.97 5.36
2746 2903 4.130118 CCACTGACAAATATAGACAGGCC 58.870 47.826 0.00 0.00 33.97 5.19
2747 2904 4.770795 ACCACTGACAAATATAGACAGGC 58.229 43.478 10.58 0.00 33.97 4.85
2748 2905 9.645059 CATATACCACTGACAAATATAGACAGG 57.355 37.037 10.58 0.00 33.97 4.00
2749 2906 9.645059 CCATATACCACTGACAAATATAGACAG 57.355 37.037 0.00 0.00 35.42 3.51
2750 2907 8.094548 GCCATATACCACTGACAAATATAGACA 58.905 37.037 0.00 0.00 0.00 3.41
2751 2908 8.314751 AGCCATATACCACTGACAAATATAGAC 58.685 37.037 0.00 0.00 0.00 2.59
2752 2909 8.435931 AGCCATATACCACTGACAAATATAGA 57.564 34.615 0.00 0.00 0.00 1.98
2753 2910 8.939929 CAAGCCATATACCACTGACAAATATAG 58.060 37.037 0.00 0.00 0.00 1.31
2754 2911 7.390440 GCAAGCCATATACCACTGACAAATATA 59.610 37.037 0.00 0.00 0.00 0.86
2755 2912 6.207417 GCAAGCCATATACCACTGACAAATAT 59.793 38.462 0.00 0.00 0.00 1.28
2756 2913 5.530915 GCAAGCCATATACCACTGACAAATA 59.469 40.000 0.00 0.00 0.00 1.40
2757 2914 4.339247 GCAAGCCATATACCACTGACAAAT 59.661 41.667 0.00 0.00 0.00 2.32
2758 2915 3.694072 GCAAGCCATATACCACTGACAAA 59.306 43.478 0.00 0.00 0.00 2.83
2759 2916 3.278574 GCAAGCCATATACCACTGACAA 58.721 45.455 0.00 0.00 0.00 3.18
2760 2917 2.421388 GGCAAGCCATATACCACTGACA 60.421 50.000 6.14 0.00 35.81 3.58
2761 2918 2.158755 AGGCAAGCCATATACCACTGAC 60.159 50.000 14.40 0.00 38.92 3.51
2762 2919 2.126882 AGGCAAGCCATATACCACTGA 58.873 47.619 14.40 0.00 38.92 3.41
2763 2920 2.645838 AGGCAAGCCATATACCACTG 57.354 50.000 14.40 0.00 38.92 3.66
2764 2921 3.290710 CAAAGGCAAGCCATATACCACT 58.709 45.455 14.40 0.00 38.92 4.00
2765 2922 3.023832 ACAAAGGCAAGCCATATACCAC 58.976 45.455 14.40 0.00 38.92 4.16
2766 2923 3.053693 AGACAAAGGCAAGCCATATACCA 60.054 43.478 14.40 0.00 38.92 3.25
2767 2924 3.316308 CAGACAAAGGCAAGCCATATACC 59.684 47.826 14.40 0.00 38.92 2.73
2768 2925 3.947834 ACAGACAAAGGCAAGCCATATAC 59.052 43.478 14.40 2.01 38.92 1.47
2769 2926 4.199310 GACAGACAAAGGCAAGCCATATA 58.801 43.478 14.40 0.00 38.92 0.86
2770 2927 3.019564 GACAGACAAAGGCAAGCCATAT 58.980 45.455 14.40 0.00 38.92 1.78
2771 2928 2.224744 TGACAGACAAAGGCAAGCCATA 60.225 45.455 14.40 0.00 38.92 2.74
2772 2929 1.251251 GACAGACAAAGGCAAGCCAT 58.749 50.000 14.40 0.00 38.92 4.40
2773 2930 0.106769 TGACAGACAAAGGCAAGCCA 60.107 50.000 14.40 0.00 38.92 4.75
2774 2931 1.068055 CATGACAGACAAAGGCAAGCC 60.068 52.381 2.02 2.02 0.00 4.35
2780 2937 4.713824 ATGATTGCATGACAGACAAAGG 57.286 40.909 0.00 0.00 32.31 3.11
2824 2981 1.323235 CATGATTAAAGACGTCGCGCA 59.677 47.619 10.46 4.61 0.00 6.09
2826 2983 1.650961 CGCATGATTAAAGACGTCGCG 60.651 52.381 10.46 11.82 0.00 5.87
2829 2986 1.911709 GCGCGCATGATTAAAGACGTC 60.912 52.381 29.10 7.70 0.00 4.34
2830 2987 0.026285 GCGCGCATGATTAAAGACGT 59.974 50.000 29.10 0.00 0.00 4.34
2831 2988 0.654472 GGCGCGCATGATTAAAGACG 60.654 55.000 34.42 0.00 0.00 4.18
2832 2989 0.657840 AGGCGCGCATGATTAAAGAC 59.342 50.000 34.42 10.63 0.00 3.01
2869 3026 4.394300 AGAAGCAATCATTAGCACACACTC 59.606 41.667 0.00 0.00 0.00 3.51
2870 3027 4.155462 CAGAAGCAATCATTAGCACACACT 59.845 41.667 0.00 0.00 0.00 3.55
2871 3028 4.409570 CAGAAGCAATCATTAGCACACAC 58.590 43.478 0.00 0.00 0.00 3.82
2872 3029 3.441222 CCAGAAGCAATCATTAGCACACA 59.559 43.478 0.00 0.00 0.00 3.72
2873 3030 3.181493 CCCAGAAGCAATCATTAGCACAC 60.181 47.826 0.00 0.00 0.00 3.82
2874 3031 3.018856 CCCAGAAGCAATCATTAGCACA 58.981 45.455 0.00 0.00 0.00 4.57
2875 3032 3.282021 TCCCAGAAGCAATCATTAGCAC 58.718 45.455 0.00 0.00 0.00 4.40
2877 3034 4.581824 TCAATCCCAGAAGCAATCATTAGC 59.418 41.667 0.00 0.00 0.00 3.09
2878 3035 6.896021 ATCAATCCCAGAAGCAATCATTAG 57.104 37.500 0.00 0.00 0.00 1.73
2880 3037 7.562454 TCTTAATCAATCCCAGAAGCAATCATT 59.438 33.333 0.00 0.00 0.00 2.57
2881 3038 7.064866 TCTTAATCAATCCCAGAAGCAATCAT 58.935 34.615 0.00 0.00 0.00 2.45
2882 3039 6.425735 TCTTAATCAATCCCAGAAGCAATCA 58.574 36.000 0.00 0.00 0.00 2.57
2883 3040 6.769822 TCTCTTAATCAATCCCAGAAGCAATC 59.230 38.462 0.00 0.00 0.00 2.67
2884 3041 6.545298 GTCTCTTAATCAATCCCAGAAGCAAT 59.455 38.462 0.00 0.00 0.00 3.56
2885 3042 5.882557 GTCTCTTAATCAATCCCAGAAGCAA 59.117 40.000 0.00 0.00 0.00 3.91
2886 3043 5.431765 GTCTCTTAATCAATCCCAGAAGCA 58.568 41.667 0.00 0.00 0.00 3.91
2887 3044 4.509600 CGTCTCTTAATCAATCCCAGAAGC 59.490 45.833 0.00 0.00 0.00 3.86
2888 3045 5.521735 CACGTCTCTTAATCAATCCCAGAAG 59.478 44.000 0.00 0.00 0.00 2.85
2909 3066 1.506262 GCACCATTAACAGGCCACG 59.494 57.895 5.01 0.00 0.00 4.94
2927 3084 9.362539 CATTTCATTTTCTTCTGTTGATTAGGG 57.637 33.333 0.00 0.00 0.00 3.53
2931 3088 9.991906 ACATCATTTCATTTTCTTCTGTTGATT 57.008 25.926 0.00 0.00 0.00 2.57
2932 3089 9.635520 GACATCATTTCATTTTCTTCTGTTGAT 57.364 29.630 0.00 0.00 0.00 2.57
2933 3090 8.084073 GGACATCATTTCATTTTCTTCTGTTGA 58.916 33.333 0.00 0.00 0.00 3.18
2934 3091 8.086522 AGGACATCATTTCATTTTCTTCTGTTG 58.913 33.333 0.00 0.00 0.00 3.33
2935 3092 8.186709 AGGACATCATTTCATTTTCTTCTGTT 57.813 30.769 0.00 0.00 0.00 3.16
2936 3093 7.771927 AGGACATCATTTCATTTTCTTCTGT 57.228 32.000 0.00 0.00 0.00 3.41
2942 3099 9.859427 TGTTGATTAGGACATCATTTCATTTTC 57.141 29.630 0.00 0.00 33.07 2.29
2945 3102 9.643693 GTTTGTTGATTAGGACATCATTTCATT 57.356 29.630 0.00 0.00 33.07 2.57
2946 3103 8.805175 TGTTTGTTGATTAGGACATCATTTCAT 58.195 29.630 0.00 0.00 33.07 2.57
2947 3104 8.081633 GTGTTTGTTGATTAGGACATCATTTCA 58.918 33.333 0.00 0.00 33.07 2.69
2948 3105 8.081633 TGTGTTTGTTGATTAGGACATCATTTC 58.918 33.333 0.00 0.00 33.07 2.17
2949 3106 7.950512 TGTGTTTGTTGATTAGGACATCATTT 58.049 30.769 0.00 0.00 33.07 2.32
2950 3107 7.523293 TGTGTTTGTTGATTAGGACATCATT 57.477 32.000 0.00 0.00 33.07 2.57
2951 3108 7.541162 CATGTGTTTGTTGATTAGGACATCAT 58.459 34.615 0.00 0.00 33.07 2.45
2952 3109 6.570186 GCATGTGTTTGTTGATTAGGACATCA 60.570 38.462 0.00 0.00 0.00 3.07
2953 3110 5.801947 GCATGTGTTTGTTGATTAGGACATC 59.198 40.000 0.00 0.00 0.00 3.06
2954 3111 5.477984 AGCATGTGTTTGTTGATTAGGACAT 59.522 36.000 0.00 0.00 0.00 3.06
2955 3112 4.826733 AGCATGTGTTTGTTGATTAGGACA 59.173 37.500 0.00 0.00 0.00 4.02
2956 3113 5.376854 AGCATGTGTTTGTTGATTAGGAC 57.623 39.130 0.00 0.00 0.00 3.85
2969 3126 0.867746 CACGCACTGTAGCATGTGTT 59.132 50.000 0.00 0.00 37.45 3.32
2970 3127 1.568612 GCACGCACTGTAGCATGTGT 61.569 55.000 0.00 0.00 40.11 3.72
2971 3128 1.133253 GCACGCACTGTAGCATGTG 59.867 57.895 0.00 0.00 37.26 3.21
2972 3129 0.674581 ATGCACGCACTGTAGCATGT 60.675 50.000 0.00 0.00 40.99 3.21
2973 3130 0.247934 CATGCACGCACTGTAGCATG 60.248 55.000 16.56 16.56 46.44 4.06
2974 3131 1.985447 GCATGCACGCACTGTAGCAT 61.985 55.000 14.21 0.00 42.27 3.79
2975 3132 2.679934 GCATGCACGCACTGTAGCA 61.680 57.895 14.21 0.00 38.40 3.49
2976 3133 1.985447 ATGCATGCACGCACTGTAGC 61.985 55.000 25.37 0.00 46.56 3.58
2977 3134 0.247934 CATGCATGCACGCACTGTAG 60.248 55.000 25.37 0.00 46.56 2.74
2978 3135 1.795507 CATGCATGCACGCACTGTA 59.204 52.632 25.37 0.00 46.56 2.74
2979 3136 2.564458 CATGCATGCACGCACTGT 59.436 55.556 25.37 1.29 46.56 3.55
3000 3157 3.411446 GACACATCAACCACCTTCATCA 58.589 45.455 0.00 0.00 0.00 3.07
3002 3159 2.108075 TGGACACATCAACCACCTTCAT 59.892 45.455 0.00 0.00 0.00 2.57
3055 3230 3.925238 GTGGATAAGCGTGCGCCG 61.925 66.667 13.21 9.69 43.17 6.46
3059 3234 0.443869 CTGTGTGTGGATAAGCGTGC 59.556 55.000 0.00 0.00 0.00 5.34
3079 3254 2.755103 GGAGTTGGCCTTAACATTCAGG 59.245 50.000 3.32 0.00 33.02 3.86
3080 3255 3.191371 GTGGAGTTGGCCTTAACATTCAG 59.809 47.826 3.32 0.00 33.02 3.02
3081 3256 3.153919 GTGGAGTTGGCCTTAACATTCA 58.846 45.455 3.32 0.00 33.02 2.57
3082 3257 2.492088 GGTGGAGTTGGCCTTAACATTC 59.508 50.000 3.32 0.00 33.02 2.67
3083 3258 2.525368 GGTGGAGTTGGCCTTAACATT 58.475 47.619 3.32 0.00 33.02 2.71
3084 3259 1.613255 CGGTGGAGTTGGCCTTAACAT 60.613 52.381 3.32 0.00 33.02 2.71
3085 3260 0.250553 CGGTGGAGTTGGCCTTAACA 60.251 55.000 3.32 0.00 33.02 2.41
3086 3261 1.583495 GCGGTGGAGTTGGCCTTAAC 61.583 60.000 3.32 0.00 0.00 2.01
3087 3262 1.302993 GCGGTGGAGTTGGCCTTAA 60.303 57.895 3.32 0.00 0.00 1.85
3088 3263 2.349755 GCGGTGGAGTTGGCCTTA 59.650 61.111 3.32 0.00 0.00 2.69
3097 3272 3.599285 TTAAGGTGGCGCGGTGGAG 62.599 63.158 8.83 0.00 0.00 3.86
3098 3273 2.472414 ATTTAAGGTGGCGCGGTGGA 62.472 55.000 8.83 0.00 0.00 4.02
3099 3274 2.043980 ATTTAAGGTGGCGCGGTGG 61.044 57.895 8.83 0.00 0.00 4.61
3100 3275 1.136565 CATTTAAGGTGGCGCGGTG 59.863 57.895 8.83 0.00 0.00 4.94
3101 3276 0.606944 TTCATTTAAGGTGGCGCGGT 60.607 50.000 8.83 0.00 0.00 5.68
3102 3277 0.179174 GTTCATTTAAGGTGGCGCGG 60.179 55.000 8.83 0.00 0.00 6.46
3103 3278 0.520412 CGTTCATTTAAGGTGGCGCG 60.520 55.000 0.00 0.00 0.00 6.86
3104 3279 0.519961 ACGTTCATTTAAGGTGGCGC 59.480 50.000 0.00 0.00 34.95 6.53
3105 3280 1.129811 GGACGTTCATTTAAGGTGGCG 59.870 52.381 0.00 0.00 36.35 5.69
3106 3281 1.129811 CGGACGTTCATTTAAGGTGGC 59.870 52.381 0.00 0.00 36.35 5.01
3107 3282 2.419667 ACGGACGTTCATTTAAGGTGG 58.580 47.619 0.00 0.00 36.35 4.61
3108 3283 4.477302 AAACGGACGTTCATTTAAGGTG 57.523 40.909 10.76 0.00 36.35 4.00
3109 3284 4.336153 ACAAAACGGACGTTCATTTAAGGT 59.664 37.500 10.76 0.00 38.85 3.50
3110 3285 4.851010 ACAAAACGGACGTTCATTTAAGG 58.149 39.130 10.76 0.00 37.35 2.69
3111 3286 4.907582 GGACAAAACGGACGTTCATTTAAG 59.092 41.667 10.76 0.00 37.35 1.85
3112 3287 4.552378 CGGACAAAACGGACGTTCATTTAA 60.552 41.667 10.76 0.00 37.35 1.52
3113 3288 3.059733 CGGACAAAACGGACGTTCATTTA 60.060 43.478 10.76 0.00 37.35 1.40
3114 3289 2.286536 CGGACAAAACGGACGTTCATTT 60.287 45.455 10.76 0.00 37.35 2.32
3115 3290 1.262151 CGGACAAAACGGACGTTCATT 59.738 47.619 10.76 0.00 37.35 2.57
3116 3291 0.863144 CGGACAAAACGGACGTTCAT 59.137 50.000 10.76 0.51 37.35 2.57
3117 3292 2.299562 CGGACAAAACGGACGTTCA 58.700 52.632 10.76 0.00 37.35 3.18
3125 3300 7.345192 CAAATAGATAGAATCCGGACAAAACG 58.655 38.462 6.12 0.00 0.00 3.60
3126 3301 7.255139 CCCAAATAGATAGAATCCGGACAAAAC 60.255 40.741 6.12 0.00 0.00 2.43
3127 3302 6.770785 CCCAAATAGATAGAATCCGGACAAAA 59.229 38.462 6.12 0.00 0.00 2.44
3128 3303 6.126594 ACCCAAATAGATAGAATCCGGACAAA 60.127 38.462 6.12 0.00 0.00 2.83
3129 3304 5.368523 ACCCAAATAGATAGAATCCGGACAA 59.631 40.000 6.12 0.00 0.00 3.18
3130 3305 4.905456 ACCCAAATAGATAGAATCCGGACA 59.095 41.667 6.12 0.00 0.00 4.02
3131 3306 5.485209 ACCCAAATAGATAGAATCCGGAC 57.515 43.478 6.12 0.00 0.00 4.79
3132 3307 6.558498 TCTACCCAAATAGATAGAATCCGGA 58.442 40.000 6.61 6.61 0.00 5.14
3133 3308 6.852420 TCTACCCAAATAGATAGAATCCGG 57.148 41.667 0.00 0.00 0.00 5.14
3134 3309 9.726438 AATTTCTACCCAAATAGATAGAATCCG 57.274 33.333 0.00 0.00 34.49 4.18
3140 3315 9.853177 ACTCCAAATTTCTACCCAAATAGATAG 57.147 33.333 0.00 0.00 31.25 2.08
3141 3316 9.847224 GACTCCAAATTTCTACCCAAATAGATA 57.153 33.333 0.00 0.00 31.25 1.98
3142 3317 7.499232 CGACTCCAAATTTCTACCCAAATAGAT 59.501 37.037 0.00 0.00 31.25 1.98
3143 3318 6.821665 CGACTCCAAATTTCTACCCAAATAGA 59.178 38.462 0.00 0.00 0.00 1.98
3144 3319 6.598064 ACGACTCCAAATTTCTACCCAAATAG 59.402 38.462 0.00 0.00 0.00 1.73
3145 3320 6.373216 CACGACTCCAAATTTCTACCCAAATA 59.627 38.462 0.00 0.00 0.00 1.40
3146 3321 5.183140 CACGACTCCAAATTTCTACCCAAAT 59.817 40.000 0.00 0.00 0.00 2.32
3147 3322 4.517453 CACGACTCCAAATTTCTACCCAAA 59.483 41.667 0.00 0.00 0.00 3.28
3148 3323 4.069304 CACGACTCCAAATTTCTACCCAA 58.931 43.478 0.00 0.00 0.00 4.12
3149 3324 3.071892 ACACGACTCCAAATTTCTACCCA 59.928 43.478 0.00 0.00 0.00 4.51
3150 3325 3.671716 ACACGACTCCAAATTTCTACCC 58.328 45.455 0.00 0.00 0.00 3.69
3151 3326 4.143179 CGAACACGACTCCAAATTTCTACC 60.143 45.833 0.00 0.00 0.00 3.18
3152 3327 4.143179 CCGAACACGACTCCAAATTTCTAC 60.143 45.833 0.00 0.00 0.00 2.59
3153 3328 3.991773 CCGAACACGACTCCAAATTTCTA 59.008 43.478 0.00 0.00 0.00 2.10
3154 3329 2.806244 CCGAACACGACTCCAAATTTCT 59.194 45.455 0.00 0.00 0.00 2.52
3155 3330 2.664698 GCCGAACACGACTCCAAATTTC 60.665 50.000 0.00 0.00 0.00 2.17
3156 3331 1.265905 GCCGAACACGACTCCAAATTT 59.734 47.619 0.00 0.00 0.00 1.82
3157 3332 0.872388 GCCGAACACGACTCCAAATT 59.128 50.000 0.00 0.00 0.00 1.82
3158 3333 0.953960 GGCCGAACACGACTCCAAAT 60.954 55.000 0.00 0.00 0.00 2.32
3159 3334 1.595929 GGCCGAACACGACTCCAAA 60.596 57.895 0.00 0.00 0.00 3.28
3160 3335 2.029964 GGCCGAACACGACTCCAA 59.970 61.111 0.00 0.00 0.00 3.53
3161 3336 4.351938 CGGCCGAACACGACTCCA 62.352 66.667 24.07 0.00 0.00 3.86
3162 3337 4.353437 ACGGCCGAACACGACTCC 62.353 66.667 35.90 0.00 0.00 3.85
3163 3338 3.103911 CACGGCCGAACACGACTC 61.104 66.667 35.90 0.00 0.00 3.36
3164 3339 3.435030 AACACGGCCGAACACGACT 62.435 57.895 35.90 2.60 0.00 4.18
3165 3340 2.935446 GAACACGGCCGAACACGAC 61.935 63.158 35.90 12.09 0.00 4.34
3166 3341 2.659244 GAACACGGCCGAACACGA 60.659 61.111 35.90 0.00 0.00 4.35
3167 3342 2.660552 AGAACACGGCCGAACACG 60.661 61.111 35.90 16.40 0.00 4.49
3168 3343 1.885850 ACAGAACACGGCCGAACAC 60.886 57.895 35.90 19.51 0.00 3.32
3169 3344 1.885388 CACAGAACACGGCCGAACA 60.885 57.895 35.90 0.00 0.00 3.18
3170 3345 0.949105 ATCACAGAACACGGCCGAAC 60.949 55.000 35.90 18.78 0.00 3.95
3171 3346 0.948623 CATCACAGAACACGGCCGAA 60.949 55.000 35.90 5.30 0.00 4.30
3172 3347 1.374125 CATCACAGAACACGGCCGA 60.374 57.895 35.90 5.86 0.00 5.54
3173 3348 3.027170 GCATCACAGAACACGGCCG 62.027 63.158 26.86 26.86 0.00 6.13
3174 3349 2.870372 GCATCACAGAACACGGCC 59.130 61.111 0.00 0.00 0.00 6.13
3175 3350 1.361668 ATCGCATCACAGAACACGGC 61.362 55.000 0.00 0.00 0.00 5.68
3176 3351 0.371301 CATCGCATCACAGAACACGG 59.629 55.000 0.00 0.00 0.00 4.94
3177 3352 0.371301 CCATCGCATCACAGAACACG 59.629 55.000 0.00 0.00 0.00 4.49
3178 3353 1.442769 ACCATCGCATCACAGAACAC 58.557 50.000 0.00 0.00 0.00 3.32
3179 3354 1.805943 CAACCATCGCATCACAGAACA 59.194 47.619 0.00 0.00 0.00 3.18
3180 3355 1.806542 ACAACCATCGCATCACAGAAC 59.193 47.619 0.00 0.00 0.00 3.01
3181 3356 1.805943 CACAACCATCGCATCACAGAA 59.194 47.619 0.00 0.00 0.00 3.02
3182 3357 1.441738 CACAACCATCGCATCACAGA 58.558 50.000 0.00 0.00 0.00 3.41
3183 3358 0.179181 GCACAACCATCGCATCACAG 60.179 55.000 0.00 0.00 0.00 3.66
3184 3359 1.875262 GCACAACCATCGCATCACA 59.125 52.632 0.00 0.00 0.00 3.58
3185 3360 1.226101 CGCACAACCATCGCATCAC 60.226 57.895 0.00 0.00 0.00 3.06
3186 3361 3.176661 CGCACAACCATCGCATCA 58.823 55.556 0.00 0.00 0.00 3.07
3191 3366 3.803082 CTGGGCGCACAACCATCG 61.803 66.667 16.01 0.00 35.93 3.84
3192 3367 4.120331 GCTGGGCGCACAACCATC 62.120 66.667 16.01 0.37 38.92 3.51
3214 3389 0.601311 GATACAGCCAGGATGCGTCC 60.601 60.000 17.85 17.85 45.45 4.79
3215 3390 0.390860 AGATACAGCCAGGATGCGTC 59.609 55.000 4.01 3.06 36.02 5.19
3216 3391 0.833287 AAGATACAGCCAGGATGCGT 59.167 50.000 4.01 0.00 36.02 5.24
3217 3392 1.224075 CAAGATACAGCCAGGATGCG 58.776 55.000 4.01 0.00 36.02 4.73
3218 3393 2.216898 GACAAGATACAGCCAGGATGC 58.783 52.381 4.01 0.00 31.97 3.91
3219 3394 2.171237 TGGACAAGATACAGCCAGGATG 59.829 50.000 2.11 2.11 0.00 3.51
3220 3395 2.171448 GTGGACAAGATACAGCCAGGAT 59.829 50.000 0.00 0.00 0.00 3.24
3221 3396 1.555075 GTGGACAAGATACAGCCAGGA 59.445 52.381 0.00 0.00 0.00 3.86
3222 3397 1.740380 CGTGGACAAGATACAGCCAGG 60.740 57.143 0.00 0.00 0.00 4.45
3223 3398 1.066858 ACGTGGACAAGATACAGCCAG 60.067 52.381 0.00 0.00 0.00 4.85
3224 3399 0.973632 ACGTGGACAAGATACAGCCA 59.026 50.000 0.00 0.00 0.00 4.75
3225 3400 2.953466 TACGTGGACAAGATACAGCC 57.047 50.000 0.00 0.00 0.00 4.85
3226 3401 5.796350 AAAATACGTGGACAAGATACAGC 57.204 39.130 0.00 0.00 0.00 4.40
3227 3402 7.596749 AGAAAAATACGTGGACAAGATACAG 57.403 36.000 0.00 0.00 0.00 2.74
3228 3403 7.972832 AAGAAAAATACGTGGACAAGATACA 57.027 32.000 0.00 0.00 0.00 2.29
3229 3404 9.750882 GTAAAGAAAAATACGTGGACAAGATAC 57.249 33.333 0.00 0.00 0.00 2.24
3230 3405 9.491675 TGTAAAGAAAAATACGTGGACAAGATA 57.508 29.630 0.00 0.00 0.00 1.98
3231 3406 8.385898 TGTAAAGAAAAATACGTGGACAAGAT 57.614 30.769 0.00 0.00 0.00 2.40
3232 3407 7.789273 TGTAAAGAAAAATACGTGGACAAGA 57.211 32.000 0.00 0.00 0.00 3.02
3312 3487 9.357161 TCTTTGGCCTTATTTTACTAGTCAAAA 57.643 29.630 3.32 8.86 0.00 2.44
3313 3488 8.927675 TCTTTGGCCTTATTTTACTAGTCAAA 57.072 30.769 3.32 0.70 0.00 2.69
3314 3489 8.927675 TTCTTTGGCCTTATTTTACTAGTCAA 57.072 30.769 3.32 0.00 0.00 3.18
3315 3490 8.927675 TTTCTTTGGCCTTATTTTACTAGTCA 57.072 30.769 3.32 0.00 0.00 3.41
3325 3500 9.489084 GTTGTTCTTATTTTCTTTGGCCTTATT 57.511 29.630 3.32 0.00 0.00 1.40
3326 3501 8.646900 TGTTGTTCTTATTTTCTTTGGCCTTAT 58.353 29.630 3.32 0.00 0.00 1.73
3327 3502 8.012957 TGTTGTTCTTATTTTCTTTGGCCTTA 57.987 30.769 3.32 0.00 0.00 2.69
3328 3503 6.883744 TGTTGTTCTTATTTTCTTTGGCCTT 58.116 32.000 3.32 0.00 0.00 4.35
3329 3504 6.478512 TGTTGTTCTTATTTTCTTTGGCCT 57.521 33.333 3.32 0.00 0.00 5.19
3330 3505 6.983890 TCTTGTTGTTCTTATTTTCTTTGGCC 59.016 34.615 0.00 0.00 0.00 5.36
3331 3506 8.419076 TTCTTGTTGTTCTTATTTTCTTTGGC 57.581 30.769 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.