Multiple sequence alignment - TraesCS2A01G065400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G065400 chr2A 100.000 4331 0 0 1 4331 29615688 29620018 0.000000e+00 7998.0
1 TraesCS2A01G065400 chr2A 89.226 2107 159 27 1510 3592 29601629 29603691 0.000000e+00 2571.0
2 TraesCS2A01G065400 chr2A 98.647 739 10 0 3593 4331 437449061 437448323 0.000000e+00 1310.0
3 TraesCS2A01G065400 chr2A 98.647 739 10 0 3593 4331 741854396 741853658 0.000000e+00 1310.0
4 TraesCS2A01G065400 chr2A 93.893 655 26 8 659 1306 29600273 29600920 0.000000e+00 976.0
5 TraesCS2A01G065400 chr2A 83.003 353 55 5 2537 2886 29654876 29655226 9.040000e-82 315.0
6 TraesCS2A01G065400 chr2A 83.439 314 48 4 3080 3391 29656147 29656458 5.480000e-74 289.0
7 TraesCS2A01G065400 chr2A 81.176 340 62 2 2540 2878 29647093 29647431 5.520000e-69 272.0
8 TraesCS2A01G065400 chr2A 83.219 292 46 3 3043 3333 29732842 29732553 9.240000e-67 265.0
9 TraesCS2A01G065400 chr2A 85.217 230 34 0 1679 1908 29645449 29645678 2.010000e-58 237.0
10 TraesCS2A01G065400 chr2A 82.264 265 47 0 1031 1295 29652979 29653243 3.370000e-56 230.0
11 TraesCS2A01G065400 chr2A 100.000 29 0 0 456 484 29600076 29600104 2.000000e-03 54.7
12 TraesCS2A01G065400 chr2B 96.547 2085 63 4 1510 3592 43158784 43156707 0.000000e+00 3443.0
13 TraesCS2A01G065400 chr2B 89.382 744 54 11 608 1337 43159796 43159064 0.000000e+00 913.0
14 TraesCS2A01G065400 chr2B 83.476 351 57 1 2537 2886 43054789 43054439 4.180000e-85 326.0
15 TraesCS2A01G065400 chr2B 81.622 370 58 10 2521 2884 42984637 42984272 9.110000e-77 298.0
16 TraesCS2A01G065400 chr2B 87.402 254 32 0 3080 3333 43053133 43052880 4.240000e-75 292.0
17 TraesCS2A01G065400 chr2B 81.882 287 46 4 1679 1960 43116916 43116631 2.010000e-58 237.0
18 TraesCS2A01G065400 chr2B 85.263 95 7 3 459 546 43159907 43159813 1.660000e-14 91.6
19 TraesCS2A01G065400 chr2D 96.719 2042 59 3 1552 3592 27318606 27320640 0.000000e+00 3393.0
20 TraesCS2A01G065400 chr2D 91.220 1902 119 20 1552 3445 27276683 27278544 0.000000e+00 2543.0
21 TraesCS2A01G065400 chr2D 93.953 893 42 6 411 1298 27317716 27318601 0.000000e+00 1339.0
22 TraesCS2A01G065400 chr2D 90.493 873 48 12 456 1298 27275811 27276678 0.000000e+00 1120.0
23 TraesCS2A01G065400 chr2D 83.761 351 56 1 2537 2886 27333638 27333988 8.980000e-87 331.0
24 TraesCS2A01G065400 chr2D 81.100 418 46 23 1 390 344462119 344461707 1.960000e-78 303.0
25 TraesCS2A01G065400 chr2D 87.795 254 31 0 3080 3333 27377609 27377862 9.110000e-77 298.0
26 TraesCS2A01G065400 chr2D 87.008 254 33 0 3080 3333 27334904 27335157 1.970000e-73 287.0
27 TraesCS2A01G065400 chr2D 83.704 270 39 4 1029 1294 27496897 27496629 2.590000e-62 250.0
28 TraesCS2A01G065400 chr2D 85.217 230 34 0 1679 1908 27324929 27325158 2.010000e-58 237.0
29 TraesCS2A01G065400 chr2D 93.846 130 6 2 1 128 344462019 344461890 1.230000e-45 195.0
30 TraesCS2A01G065400 chr5A 98.782 739 9 0 3593 4331 699414642 699413904 0.000000e+00 1315.0
31 TraesCS2A01G065400 chr5A 91.351 185 10 2 205 389 546875902 546875724 9.300000e-62 248.0
32 TraesCS2A01G065400 chr5A 95.833 120 5 0 1 120 23926921 23927040 1.230000e-45 195.0
33 TraesCS2A01G065400 chr3A 98.649 740 10 0 3592 4331 46708957 46708218 0.000000e+00 1312.0
34 TraesCS2A01G065400 chr3A 98.649 740 10 0 3592 4331 379812666 379811927 0.000000e+00 1312.0
35 TraesCS2A01G065400 chr3A 98.647 739 10 0 3593 4331 266661687 266660949 0.000000e+00 1310.0
36 TraesCS2A01G065400 chr3A 98.647 739 10 0 3593 4331 680692365 680693103 0.000000e+00 1310.0
37 TraesCS2A01G065400 chr1A 98.647 739 10 0 3593 4331 349305512 349304774 0.000000e+00 1310.0
38 TraesCS2A01G065400 chr1A 98.013 755 13 1 3579 4331 578333476 578334230 0.000000e+00 1310.0
39 TraesCS2A01G065400 chr1B 99.743 389 1 0 1 389 520098812 520099200 0.000000e+00 713.0
40 TraesCS2A01G065400 chr4D 81.995 411 41 23 1 383 475923528 475923123 6.990000e-83 318.0
41 TraesCS2A01G065400 chr4D 81.265 411 44 23 1 383 459890601 459890196 7.040000e-78 302.0
42 TraesCS2A01G065400 chr4D 94.615 130 5 2 1 128 459890501 459890372 2.640000e-47 200.0
43 TraesCS2A01G065400 chr4D 94.615 130 5 2 1 128 475923428 475923299 2.640000e-47 200.0
44 TraesCS2A01G065400 chr7D 81.598 413 44 22 1 385 88366921 88367329 3.250000e-81 313.0
45 TraesCS2A01G065400 chr7D 95.041 121 5 1 1 120 88367021 88367141 5.720000e-44 189.0
46 TraesCS2A01G065400 chr6D 81.146 419 46 24 1 391 20926317 20925904 5.440000e-79 305.0
47 TraesCS2A01G065400 chr6D 94.615 130 5 2 1 128 20926217 20926088 2.640000e-47 200.0
48 TraesCS2A01G065400 chr6B 81.022 411 45 23 1 383 42494897 42494492 3.270000e-76 296.0
49 TraesCS2A01G065400 chr6B 79.805 411 51 22 1 383 713113189 713112783 1.980000e-68 270.0
50 TraesCS2A01G065400 chr6B 96.154 130 3 2 1 128 713113088 713112959 1.220000e-50 211.0
51 TraesCS2A01G065400 chr6B 93.846 130 6 2 1 128 42494797 42494668 1.230000e-45 195.0
52 TraesCS2A01G065400 chr1D 82.500 160 18 6 1347 1502 376240228 376240075 9.770000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G065400 chr2A 29615688 29620018 4330 False 7998.000000 7998 100.000000 1 4331 1 chr2A.!!$F1 4330
1 TraesCS2A01G065400 chr2A 437448323 437449061 738 True 1310.000000 1310 98.647000 3593 4331 1 chr2A.!!$R2 738
2 TraesCS2A01G065400 chr2A 741853658 741854396 738 True 1310.000000 1310 98.647000 3593 4331 1 chr2A.!!$R3 738
3 TraesCS2A01G065400 chr2A 29600076 29603691 3615 False 1200.566667 2571 94.373000 456 3592 3 chr2A.!!$F2 3136
4 TraesCS2A01G065400 chr2A 29652979 29656458 3479 False 278.000000 315 82.902000 1031 3391 3 chr2A.!!$F4 2360
5 TraesCS2A01G065400 chr2A 29645449 29647431 1982 False 254.500000 272 83.196500 1679 2878 2 chr2A.!!$F3 1199
6 TraesCS2A01G065400 chr2B 43156707 43159907 3200 True 1482.533333 3443 90.397333 459 3592 3 chr2B.!!$R4 3133
7 TraesCS2A01G065400 chr2B 43052880 43054789 1909 True 309.000000 326 85.439000 2537 3333 2 chr2B.!!$R3 796
8 TraesCS2A01G065400 chr2D 27317716 27320640 2924 False 2366.000000 3393 95.336000 411 3592 2 chr2D.!!$F4 3181
9 TraesCS2A01G065400 chr2D 27275811 27278544 2733 False 1831.500000 2543 90.856500 456 3445 2 chr2D.!!$F3 2989
10 TraesCS2A01G065400 chr2D 27333638 27335157 1519 False 309.000000 331 85.384500 2537 3333 2 chr2D.!!$F5 796
11 TraesCS2A01G065400 chr5A 699413904 699414642 738 True 1315.000000 1315 98.782000 3593 4331 1 chr5A.!!$R2 738
12 TraesCS2A01G065400 chr3A 46708218 46708957 739 True 1312.000000 1312 98.649000 3592 4331 1 chr3A.!!$R1 739
13 TraesCS2A01G065400 chr3A 379811927 379812666 739 True 1312.000000 1312 98.649000 3592 4331 1 chr3A.!!$R3 739
14 TraesCS2A01G065400 chr3A 266660949 266661687 738 True 1310.000000 1310 98.647000 3593 4331 1 chr3A.!!$R2 738
15 TraesCS2A01G065400 chr3A 680692365 680693103 738 False 1310.000000 1310 98.647000 3593 4331 1 chr3A.!!$F1 738
16 TraesCS2A01G065400 chr1A 349304774 349305512 738 True 1310.000000 1310 98.647000 3593 4331 1 chr1A.!!$R1 738
17 TraesCS2A01G065400 chr1A 578333476 578334230 754 False 1310.000000 1310 98.013000 3579 4331 1 chr1A.!!$F1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.100325 TGTTGCTTGCACTGTTTCCG 59.900 50.0 0.00 0.00 0.00 4.30 F
768 859 0.175531 GCCGGCCATGTTTTAGCATT 59.824 50.0 18.11 0.00 0.00 3.56 F
1379 1548 0.034616 GATCTCGGCTTCCATGGAGG 59.965 60.0 19.29 19.29 39.47 4.30 F
1385 1554 0.106318 GGCTTCCATGGAGGCTGATT 60.106 55.0 38.33 0.00 45.02 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 1528 0.034616 CTCCATGGAAGCCGAGATCC 59.965 60.000 17.00 0.0 36.21 3.36 R
1889 2591 4.227300 TGGTTTGGCCAGTAACTCATATCT 59.773 41.667 17.69 0.0 43.61 1.98 R
3204 5902 0.895530 TCTCTTCGGTACTGCCCAAG 59.104 55.000 0.00 0.0 0.00 3.61 R
3447 6145 4.560128 TGAAGTAACAGATGTCTCAGTGC 58.440 43.478 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.005583 TGAATTTCTTGTGAATCTGAGTGC 57.994 37.500 0.00 0.00 31.56 4.40
25 26 5.532032 TGAATTTCTTGTGAATCTGAGTGCA 59.468 36.000 0.00 0.00 31.56 4.57
26 27 6.039605 TGAATTTCTTGTGAATCTGAGTGCAA 59.960 34.615 0.00 0.00 31.56 4.08
27 28 5.833406 TTTCTTGTGAATCTGAGTGCAAA 57.167 34.783 0.00 0.00 31.56 3.68
28 29 4.818534 TCTTGTGAATCTGAGTGCAAAC 57.181 40.909 0.00 0.00 0.00 2.93
29 30 4.198530 TCTTGTGAATCTGAGTGCAAACA 58.801 39.130 0.00 0.00 0.00 2.83
30 31 4.274214 TCTTGTGAATCTGAGTGCAAACAG 59.726 41.667 13.17 13.17 35.72 3.16
31 32 3.544684 TGTGAATCTGAGTGCAAACAGT 58.455 40.909 17.11 3.61 35.84 3.55
32 33 4.702831 TGTGAATCTGAGTGCAAACAGTA 58.297 39.130 17.11 8.01 35.84 2.74
33 34 5.308014 TGTGAATCTGAGTGCAAACAGTAT 58.692 37.500 17.11 9.88 35.84 2.12
34 35 5.764686 TGTGAATCTGAGTGCAAACAGTATT 59.235 36.000 17.11 14.94 35.84 1.89
35 36 6.262944 TGTGAATCTGAGTGCAAACAGTATTT 59.737 34.615 17.11 11.38 35.84 1.40
36 37 7.141363 GTGAATCTGAGTGCAAACAGTATTTT 58.859 34.615 17.11 9.63 35.84 1.82
37 38 7.113965 GTGAATCTGAGTGCAAACAGTATTTTG 59.886 37.037 17.11 0.00 39.15 2.44
38 39 6.882610 ATCTGAGTGCAAACAGTATTTTGA 57.117 33.333 17.11 2.01 38.54 2.69
39 40 6.060028 TCTGAGTGCAAACAGTATTTTGAC 57.940 37.500 17.11 0.00 38.54 3.18
40 41 5.822519 TCTGAGTGCAAACAGTATTTTGACT 59.177 36.000 17.11 1.37 38.54 3.41
50 51 4.609947 CAGTATTTTGACTGTTGCTTGCA 58.390 39.130 0.00 0.00 41.67 4.08
51 52 4.442073 CAGTATTTTGACTGTTGCTTGCAC 59.558 41.667 0.00 0.00 41.67 4.57
52 53 3.806625 ATTTTGACTGTTGCTTGCACT 57.193 38.095 0.00 0.00 0.00 4.40
53 54 2.565210 TTTGACTGTTGCTTGCACTG 57.435 45.000 0.00 0.00 0.00 3.66
54 55 1.462616 TTGACTGTTGCTTGCACTGT 58.537 45.000 0.00 1.72 0.00 3.55
55 56 1.462616 TGACTGTTGCTTGCACTGTT 58.537 45.000 0.00 0.00 0.00 3.16
56 57 1.818060 TGACTGTTGCTTGCACTGTTT 59.182 42.857 0.00 0.00 0.00 2.83
57 58 2.159393 TGACTGTTGCTTGCACTGTTTC 60.159 45.455 0.00 0.00 0.00 2.78
58 59 1.134946 ACTGTTGCTTGCACTGTTTCC 59.865 47.619 0.00 0.00 0.00 3.13
59 60 0.100325 TGTTGCTTGCACTGTTTCCG 59.900 50.000 0.00 0.00 0.00 4.30
60 61 0.594796 GTTGCTTGCACTGTTTCCGG 60.595 55.000 0.00 0.00 0.00 5.14
61 62 0.749818 TTGCTTGCACTGTTTCCGGA 60.750 50.000 0.00 0.00 0.00 5.14
62 63 1.282875 GCTTGCACTGTTTCCGGAC 59.717 57.895 1.83 0.00 0.00 4.79
63 64 1.166531 GCTTGCACTGTTTCCGGACT 61.167 55.000 1.83 0.00 0.00 3.85
64 65 1.876416 GCTTGCACTGTTTCCGGACTA 60.876 52.381 1.83 0.00 0.00 2.59
65 66 2.489971 CTTGCACTGTTTCCGGACTAA 58.510 47.619 1.83 0.00 0.00 2.24
66 67 2.623878 TGCACTGTTTCCGGACTAAA 57.376 45.000 1.83 0.00 0.00 1.85
67 68 2.920524 TGCACTGTTTCCGGACTAAAA 58.079 42.857 1.83 0.00 0.00 1.52
68 69 2.875933 TGCACTGTTTCCGGACTAAAAG 59.124 45.455 1.83 3.70 0.00 2.27
69 70 2.225727 GCACTGTTTCCGGACTAAAAGG 59.774 50.000 1.83 0.00 0.00 3.11
70 71 3.473625 CACTGTTTCCGGACTAAAAGGT 58.526 45.455 1.83 0.00 0.00 3.50
71 72 3.881089 CACTGTTTCCGGACTAAAAGGTT 59.119 43.478 1.83 0.00 0.00 3.50
72 73 3.881089 ACTGTTTCCGGACTAAAAGGTTG 59.119 43.478 1.83 0.00 0.00 3.77
73 74 4.131596 CTGTTTCCGGACTAAAAGGTTGA 58.868 43.478 1.83 0.00 0.00 3.18
74 75 4.721132 TGTTTCCGGACTAAAAGGTTGAT 58.279 39.130 1.83 0.00 0.00 2.57
75 76 4.517453 TGTTTCCGGACTAAAAGGTTGATG 59.483 41.667 1.83 0.00 0.00 3.07
76 77 4.360951 TTCCGGACTAAAAGGTTGATGT 57.639 40.909 1.83 0.00 0.00 3.06
77 78 4.360951 TCCGGACTAAAAGGTTGATGTT 57.639 40.909 0.00 0.00 0.00 2.71
78 79 4.721132 TCCGGACTAAAAGGTTGATGTTT 58.279 39.130 0.00 0.00 0.00 2.83
79 80 4.517453 TCCGGACTAAAAGGTTGATGTTTG 59.483 41.667 0.00 0.00 0.00 2.93
80 81 4.277423 CCGGACTAAAAGGTTGATGTTTGT 59.723 41.667 0.00 0.00 0.00 2.83
81 82 5.470777 CCGGACTAAAAGGTTGATGTTTGTA 59.529 40.000 0.00 0.00 0.00 2.41
82 83 6.150474 CCGGACTAAAAGGTTGATGTTTGTAT 59.850 38.462 0.00 0.00 0.00 2.29
83 84 7.308951 CCGGACTAAAAGGTTGATGTTTGTATT 60.309 37.037 0.00 0.00 0.00 1.89
84 85 7.537306 CGGACTAAAAGGTTGATGTTTGTATTG 59.463 37.037 0.00 0.00 0.00 1.90
85 86 8.357402 GGACTAAAAGGTTGATGTTTGTATTGT 58.643 33.333 0.00 0.00 0.00 2.71
86 87 9.180678 GACTAAAAGGTTGATGTTTGTATTGTG 57.819 33.333 0.00 0.00 0.00 3.33
87 88 8.691797 ACTAAAAGGTTGATGTTTGTATTGTGT 58.308 29.630 0.00 0.00 0.00 3.72
88 89 9.528018 CTAAAAGGTTGATGTTTGTATTGTGTT 57.472 29.630 0.00 0.00 0.00 3.32
89 90 8.785329 AAAAGGTTGATGTTTGTATTGTGTTT 57.215 26.923 0.00 0.00 0.00 2.83
90 91 8.785329 AAAGGTTGATGTTTGTATTGTGTTTT 57.215 26.923 0.00 0.00 0.00 2.43
91 92 7.769272 AGGTTGATGTTTGTATTGTGTTTTG 57.231 32.000 0.00 0.00 0.00 2.44
92 93 7.327214 AGGTTGATGTTTGTATTGTGTTTTGT 58.673 30.769 0.00 0.00 0.00 2.83
93 94 7.821846 AGGTTGATGTTTGTATTGTGTTTTGTT 59.178 29.630 0.00 0.00 0.00 2.83
94 95 8.113675 GGTTGATGTTTGTATTGTGTTTTGTTC 58.886 33.333 0.00 0.00 0.00 3.18
95 96 8.651588 GTTGATGTTTGTATTGTGTTTTGTTCA 58.348 29.630 0.00 0.00 0.00 3.18
96 97 8.763049 TGATGTTTGTATTGTGTTTTGTTCAA 57.237 26.923 0.00 0.00 0.00 2.69
97 98 9.208022 TGATGTTTGTATTGTGTTTTGTTCAAA 57.792 25.926 0.00 0.00 0.00 2.69
99 100 9.818796 ATGTTTGTATTGTGTTTTGTTCAAAAC 57.181 25.926 25.00 25.00 41.65 2.43
100 101 8.826710 TGTTTGTATTGTGTTTTGTTCAAAACA 58.173 25.926 28.37 28.37 46.71 2.83
108 109 6.292389 TGTTTTGTTCAAAACACTTGGTTG 57.708 33.333 28.37 0.00 44.80 3.77
109 110 5.817816 TGTTTTGTTCAAAACACTTGGTTGT 59.182 32.000 28.37 0.00 44.80 3.32
110 111 6.984474 TGTTTTGTTCAAAACACTTGGTTGTA 59.016 30.769 28.37 11.05 44.80 2.41
111 112 7.042658 TGTTTTGTTCAAAACACTTGGTTGTAC 60.043 33.333 28.37 9.24 44.80 2.90
112 113 5.968528 TGTTCAAAACACTTGGTTGTACT 57.031 34.783 0.00 0.00 40.35 2.73
113 114 7.450124 TTGTTCAAAACACTTGGTTGTACTA 57.550 32.000 0.00 0.00 41.97 1.82
114 115 7.633193 TGTTCAAAACACTTGGTTGTACTAT 57.367 32.000 0.00 0.00 40.35 2.12
115 116 8.057536 TGTTCAAAACACTTGGTTGTACTATT 57.942 30.769 0.00 0.00 40.35 1.73
116 117 7.971168 TGTTCAAAACACTTGGTTGTACTATTG 59.029 33.333 0.00 0.00 40.35 1.90
117 118 7.867305 TCAAAACACTTGGTTGTACTATTGA 57.133 32.000 0.00 0.00 40.35 2.57
118 119 8.282455 TCAAAACACTTGGTTGTACTATTGAA 57.718 30.769 0.00 0.00 40.35 2.69
119 120 8.908903 TCAAAACACTTGGTTGTACTATTGAAT 58.091 29.630 0.00 0.00 40.35 2.57
133 134 9.124807 TGTACTATTGAATATAAATGAGTCGCG 57.875 33.333 0.00 0.00 0.00 5.87
134 135 9.125906 GTACTATTGAATATAAATGAGTCGCGT 57.874 33.333 5.77 0.00 0.00 6.01
135 136 8.007821 ACTATTGAATATAAATGAGTCGCGTG 57.992 34.615 5.77 0.00 0.00 5.34
136 137 6.844696 ATTGAATATAAATGAGTCGCGTGT 57.155 33.333 5.77 0.00 0.00 4.49
137 138 6.656314 TTGAATATAAATGAGTCGCGTGTT 57.344 33.333 5.77 0.00 0.00 3.32
138 139 6.656314 TGAATATAAATGAGTCGCGTGTTT 57.344 33.333 5.77 4.27 0.00 2.83
139 140 6.474364 TGAATATAAATGAGTCGCGTGTTTG 58.526 36.000 5.77 0.00 0.00 2.93
140 141 3.740044 ATAAATGAGTCGCGTGTTTGG 57.260 42.857 5.77 0.00 0.00 3.28
141 142 0.591170 AAATGAGTCGCGTGTTTGGG 59.409 50.000 5.77 0.00 0.00 4.12
142 143 1.852067 AATGAGTCGCGTGTTTGGGC 61.852 55.000 5.77 0.00 0.00 5.36
143 144 2.665185 GAGTCGCGTGTTTGGGCT 60.665 61.111 5.77 0.00 0.00 5.19
144 145 2.954753 GAGTCGCGTGTTTGGGCTG 61.955 63.158 5.77 0.00 0.00 4.85
145 146 2.970324 GTCGCGTGTTTGGGCTGA 60.970 61.111 5.77 0.00 0.00 4.26
146 147 2.203084 TCGCGTGTTTGGGCTGAA 60.203 55.556 5.77 0.00 0.00 3.02
147 148 1.820056 TCGCGTGTTTGGGCTGAAA 60.820 52.632 5.77 0.00 0.00 2.69
148 149 1.064946 CGCGTGTTTGGGCTGAAAA 59.935 52.632 0.00 0.00 0.00 2.29
149 150 0.318614 CGCGTGTTTGGGCTGAAAAT 60.319 50.000 0.00 0.00 0.00 1.82
150 151 1.864565 GCGTGTTTGGGCTGAAAATT 58.135 45.000 0.00 0.00 0.00 1.82
151 152 2.209273 GCGTGTTTGGGCTGAAAATTT 58.791 42.857 0.00 0.00 0.00 1.82
152 153 2.032979 GCGTGTTTGGGCTGAAAATTTG 60.033 45.455 0.00 0.00 0.00 2.32
153 154 3.194062 CGTGTTTGGGCTGAAAATTTGT 58.806 40.909 0.00 0.00 0.00 2.83
154 155 3.620821 CGTGTTTGGGCTGAAAATTTGTT 59.379 39.130 0.00 0.00 0.00 2.83
155 156 4.094146 CGTGTTTGGGCTGAAAATTTGTTT 59.906 37.500 0.00 0.00 0.00 2.83
156 157 5.331098 GTGTTTGGGCTGAAAATTTGTTTG 58.669 37.500 0.00 0.00 0.00 2.93
157 158 5.006386 TGTTTGGGCTGAAAATTTGTTTGT 58.994 33.333 0.00 0.00 0.00 2.83
158 159 6.092807 GTGTTTGGGCTGAAAATTTGTTTGTA 59.907 34.615 0.00 0.00 0.00 2.41
159 160 6.092807 TGTTTGGGCTGAAAATTTGTTTGTAC 59.907 34.615 0.00 0.00 0.00 2.90
160 161 5.606348 TGGGCTGAAAATTTGTTTGTACT 57.394 34.783 0.00 0.00 0.00 2.73
161 162 5.355596 TGGGCTGAAAATTTGTTTGTACTG 58.644 37.500 0.00 0.00 0.00 2.74
162 163 5.105146 TGGGCTGAAAATTTGTTTGTACTGT 60.105 36.000 0.00 0.00 0.00 3.55
163 164 5.815222 GGGCTGAAAATTTGTTTGTACTGTT 59.185 36.000 0.00 0.00 0.00 3.16
164 165 6.238076 GGGCTGAAAATTTGTTTGTACTGTTG 60.238 38.462 0.00 0.00 0.00 3.33
165 166 6.533367 GGCTGAAAATTTGTTTGTACTGTTGA 59.467 34.615 0.00 0.00 0.00 3.18
166 167 7.064016 GGCTGAAAATTTGTTTGTACTGTTGAA 59.936 33.333 0.00 0.00 0.00 2.69
167 168 8.603181 GCTGAAAATTTGTTTGTACTGTTGAAT 58.397 29.630 0.00 0.00 0.00 2.57
178 179 9.556030 GTTTGTACTGTTGAATATAAAAGAGGC 57.444 33.333 0.00 0.00 0.00 4.70
179 180 7.534085 TGTACTGTTGAATATAAAAGAGGCG 57.466 36.000 0.00 0.00 0.00 5.52
180 181 6.537301 TGTACTGTTGAATATAAAAGAGGCGG 59.463 38.462 0.00 0.00 0.00 6.13
181 182 5.497474 ACTGTTGAATATAAAAGAGGCGGT 58.503 37.500 0.00 0.00 0.00 5.68
182 183 5.944007 ACTGTTGAATATAAAAGAGGCGGTT 59.056 36.000 0.00 0.00 0.00 4.44
183 184 6.433093 ACTGTTGAATATAAAAGAGGCGGTTT 59.567 34.615 0.00 0.00 0.00 3.27
184 185 6.616947 TGTTGAATATAAAAGAGGCGGTTTG 58.383 36.000 0.00 0.00 0.00 2.93
185 186 6.207810 TGTTGAATATAAAAGAGGCGGTTTGT 59.792 34.615 0.00 0.00 0.00 2.83
186 187 7.390996 TGTTGAATATAAAAGAGGCGGTTTGTA 59.609 33.333 0.00 0.00 0.00 2.41
187 188 7.311364 TGAATATAAAAGAGGCGGTTTGTAC 57.689 36.000 0.00 0.00 0.00 2.90
188 189 7.107542 TGAATATAAAAGAGGCGGTTTGTACT 58.892 34.615 0.00 0.00 0.00 2.73
189 190 6.920569 ATATAAAAGAGGCGGTTTGTACTG 57.079 37.500 0.00 0.00 0.00 2.74
190 191 2.632987 AAAGAGGCGGTTTGTACTGT 57.367 45.000 0.00 0.00 32.95 3.55
191 192 2.632987 AAGAGGCGGTTTGTACTGTT 57.367 45.000 0.00 0.00 32.95 3.16
192 193 1.878953 AGAGGCGGTTTGTACTGTTG 58.121 50.000 0.00 0.00 32.95 3.33
193 194 1.414919 AGAGGCGGTTTGTACTGTTGA 59.585 47.619 0.00 0.00 32.95 3.18
194 195 2.158871 AGAGGCGGTTTGTACTGTTGAA 60.159 45.455 0.00 0.00 32.95 2.69
195 196 2.812011 GAGGCGGTTTGTACTGTTGAAT 59.188 45.455 0.00 0.00 32.95 2.57
196 197 3.998341 GAGGCGGTTTGTACTGTTGAATA 59.002 43.478 0.00 0.00 32.95 1.75
197 198 4.585879 AGGCGGTTTGTACTGTTGAATAT 58.414 39.130 0.00 0.00 32.95 1.28
198 199 5.736813 AGGCGGTTTGTACTGTTGAATATA 58.263 37.500 0.00 0.00 32.95 0.86
199 200 6.174760 AGGCGGTTTGTACTGTTGAATATAA 58.825 36.000 0.00 0.00 32.95 0.98
200 201 6.655848 AGGCGGTTTGTACTGTTGAATATAAA 59.344 34.615 0.00 0.00 32.95 1.40
201 202 7.175293 AGGCGGTTTGTACTGTTGAATATAAAA 59.825 33.333 0.00 0.00 32.95 1.52
202 203 7.483691 GGCGGTTTGTACTGTTGAATATAAAAG 59.516 37.037 0.00 0.00 32.95 2.27
203 204 8.231837 GCGGTTTGTACTGTTGAATATAAAAGA 58.768 33.333 0.00 0.00 32.95 2.52
256 257 5.201713 TGTGAAGTTTCAGAGTGTCTAGG 57.798 43.478 0.00 0.00 37.98 3.02
257 258 3.991121 GTGAAGTTTCAGAGTGTCTAGGC 59.009 47.826 0.00 0.00 37.98 3.93
258 259 3.898123 TGAAGTTTCAGAGTGTCTAGGCT 59.102 43.478 0.00 0.00 32.50 4.58
259 260 3.951775 AGTTTCAGAGTGTCTAGGCTG 57.048 47.619 0.00 0.00 0.00 4.85
260 261 3.501349 AGTTTCAGAGTGTCTAGGCTGA 58.499 45.455 0.00 0.00 35.74 4.26
261 262 3.898123 AGTTTCAGAGTGTCTAGGCTGAA 59.102 43.478 0.00 0.00 43.38 3.02
263 264 4.955811 TTCAGAGTGTCTAGGCTGAAAA 57.044 40.909 0.00 0.00 42.47 2.29
264 265 4.258702 TCAGAGTGTCTAGGCTGAAAAC 57.741 45.455 0.00 0.00 34.71 2.43
265 266 3.898123 TCAGAGTGTCTAGGCTGAAAACT 59.102 43.478 0.00 0.00 34.71 2.66
266 267 3.993081 CAGAGTGTCTAGGCTGAAAACTG 59.007 47.826 0.00 0.00 0.00 3.16
267 268 3.643792 AGAGTGTCTAGGCTGAAAACTGT 59.356 43.478 0.00 0.00 0.00 3.55
268 269 3.733337 AGTGTCTAGGCTGAAAACTGTG 58.267 45.455 0.00 0.00 0.00 3.66
269 270 3.388024 AGTGTCTAGGCTGAAAACTGTGA 59.612 43.478 0.00 0.00 0.00 3.58
270 271 4.127171 GTGTCTAGGCTGAAAACTGTGAA 58.873 43.478 0.00 0.00 0.00 3.18
271 272 4.212214 GTGTCTAGGCTGAAAACTGTGAAG 59.788 45.833 0.00 0.00 0.00 3.02
272 273 4.141711 TGTCTAGGCTGAAAACTGTGAAGT 60.142 41.667 0.00 0.00 0.00 3.01
273 274 4.449405 GTCTAGGCTGAAAACTGTGAAGTC 59.551 45.833 0.00 0.00 0.00 3.01
274 275 3.567478 AGGCTGAAAACTGTGAAGTCT 57.433 42.857 0.00 0.00 0.00 3.24
275 276 3.209410 AGGCTGAAAACTGTGAAGTCTG 58.791 45.455 0.00 0.00 0.00 3.51
276 277 3.118261 AGGCTGAAAACTGTGAAGTCTGA 60.118 43.478 0.00 0.00 0.00 3.27
277 278 3.627577 GGCTGAAAACTGTGAAGTCTGAA 59.372 43.478 0.00 0.00 0.00 3.02
278 279 4.276926 GGCTGAAAACTGTGAAGTCTGAAT 59.723 41.667 0.00 0.00 0.00 2.57
279 280 5.210715 GCTGAAAACTGTGAAGTCTGAATG 58.789 41.667 0.00 0.00 0.00 2.67
280 281 5.220931 GCTGAAAACTGTGAAGTCTGAATGT 60.221 40.000 0.00 0.00 0.00 2.71
281 282 6.678900 GCTGAAAACTGTGAAGTCTGAATGTT 60.679 38.462 0.00 0.00 0.00 2.71
282 283 6.554419 TGAAAACTGTGAAGTCTGAATGTTG 58.446 36.000 0.00 0.00 0.00 3.33
283 284 6.150976 TGAAAACTGTGAAGTCTGAATGTTGT 59.849 34.615 0.00 0.00 0.00 3.32
284 285 6.515272 AAACTGTGAAGTCTGAATGTTGTT 57.485 33.333 0.00 0.00 0.00 2.83
285 286 6.515272 AACTGTGAAGTCTGAATGTTGTTT 57.485 33.333 0.00 0.00 0.00 2.83
286 287 6.515272 ACTGTGAAGTCTGAATGTTGTTTT 57.485 33.333 0.00 0.00 0.00 2.43
287 288 6.924111 ACTGTGAAGTCTGAATGTTGTTTTT 58.076 32.000 0.00 0.00 0.00 1.94
288 289 6.808212 ACTGTGAAGTCTGAATGTTGTTTTTG 59.192 34.615 0.00 0.00 0.00 2.44
289 290 5.576384 TGTGAAGTCTGAATGTTGTTTTTGC 59.424 36.000 0.00 0.00 0.00 3.68
290 291 5.807011 GTGAAGTCTGAATGTTGTTTTTGCT 59.193 36.000 0.00 0.00 0.00 3.91
291 292 6.311200 GTGAAGTCTGAATGTTGTTTTTGCTT 59.689 34.615 0.00 0.00 0.00 3.91
292 293 6.873076 TGAAGTCTGAATGTTGTTTTTGCTTT 59.127 30.769 0.00 0.00 0.00 3.51
293 294 6.651755 AGTCTGAATGTTGTTTTTGCTTTG 57.348 33.333 0.00 0.00 0.00 2.77
294 295 5.581874 AGTCTGAATGTTGTTTTTGCTTTGG 59.418 36.000 0.00 0.00 0.00 3.28
295 296 5.580297 GTCTGAATGTTGTTTTTGCTTTGGA 59.420 36.000 0.00 0.00 0.00 3.53
296 297 6.091986 GTCTGAATGTTGTTTTTGCTTTGGAA 59.908 34.615 0.00 0.00 0.00 3.53
297 298 6.652481 TCTGAATGTTGTTTTTGCTTTGGAAA 59.348 30.769 0.00 0.00 0.00 3.13
298 299 6.840075 TGAATGTTGTTTTTGCTTTGGAAAG 58.160 32.000 0.00 0.00 39.03 2.62
308 309 0.239347 CTTTGGAAAGCTGCTGTCCG 59.761 55.000 28.91 14.61 40.65 4.79
309 310 0.465460 TTTGGAAAGCTGCTGTCCGT 60.465 50.000 28.91 0.00 40.65 4.69
310 311 0.465460 TTGGAAAGCTGCTGTCCGTT 60.465 50.000 28.91 8.72 40.65 4.44
311 312 1.165907 TGGAAAGCTGCTGTCCGTTG 61.166 55.000 28.91 0.00 40.65 4.10
312 313 1.576421 GAAAGCTGCTGTCCGTTGG 59.424 57.895 8.72 0.00 0.00 3.77
313 314 0.884704 GAAAGCTGCTGTCCGTTGGA 60.885 55.000 8.72 0.00 0.00 3.53
314 315 0.250901 AAAGCTGCTGTCCGTTGGAT 60.251 50.000 1.35 0.00 32.73 3.41
315 316 0.957395 AAGCTGCTGTCCGTTGGATG 60.957 55.000 1.35 0.00 32.73 3.51
316 317 3.044059 GCTGCTGTCCGTTGGATGC 62.044 63.158 0.00 6.78 35.65 3.91
317 318 1.672030 CTGCTGTCCGTTGGATGCA 60.672 57.895 13.21 13.21 39.96 3.96
318 319 1.642037 CTGCTGTCCGTTGGATGCAG 61.642 60.000 20.84 20.84 46.46 4.41
319 320 2.401766 GCTGTCCGTTGGATGCAGG 61.402 63.158 0.00 0.00 35.35 4.85
320 321 2.359850 TGTCCGTTGGATGCAGGC 60.360 61.111 0.00 0.00 32.73 4.85
321 322 2.045926 GTCCGTTGGATGCAGGCT 60.046 61.111 0.00 0.00 32.73 4.58
322 323 2.046023 TCCGTTGGATGCAGGCTG 60.046 61.111 10.94 10.94 0.00 4.85
323 324 3.136123 CCGTTGGATGCAGGCTGG 61.136 66.667 17.64 0.00 0.00 4.85
324 325 3.136123 CGTTGGATGCAGGCTGGG 61.136 66.667 17.64 0.00 0.00 4.45
325 326 3.455469 GTTGGATGCAGGCTGGGC 61.455 66.667 17.64 2.80 0.00 5.36
335 336 4.864334 GGCTGGGCGGTGGATGAG 62.864 72.222 0.00 0.00 0.00 2.90
336 337 3.785859 GCTGGGCGGTGGATGAGA 61.786 66.667 0.00 0.00 0.00 3.27
337 338 2.503061 CTGGGCGGTGGATGAGAG 59.497 66.667 0.00 0.00 0.00 3.20
338 339 3.083349 TGGGCGGTGGATGAGAGG 61.083 66.667 0.00 0.00 0.00 3.69
339 340 4.554036 GGGCGGTGGATGAGAGGC 62.554 72.222 0.00 0.00 0.00 4.70
340 341 4.554036 GGCGGTGGATGAGAGGCC 62.554 72.222 0.00 0.00 0.00 5.19
341 342 4.899239 GCGGTGGATGAGAGGCCG 62.899 72.222 0.00 0.00 44.60 6.13
342 343 4.899239 CGGTGGATGAGAGGCCGC 62.899 72.222 0.00 0.00 35.90 6.53
343 344 4.899239 GGTGGATGAGAGGCCGCG 62.899 72.222 0.00 0.00 35.54 6.46
344 345 3.838271 GTGGATGAGAGGCCGCGA 61.838 66.667 8.23 0.00 0.00 5.87
345 346 3.531207 TGGATGAGAGGCCGCGAG 61.531 66.667 8.23 0.00 0.00 5.03
358 359 4.961511 GCGAGGCACACGGTGACA 62.962 66.667 16.29 0.00 45.35 3.58
359 360 2.048222 CGAGGCACACGGTGACAT 60.048 61.111 16.29 3.88 45.35 3.06
360 361 2.382746 CGAGGCACACGGTGACATG 61.383 63.158 16.29 3.91 45.35 3.21
361 362 2.669569 AGGCACACGGTGACATGC 60.670 61.111 16.29 13.96 45.35 4.06
363 364 2.977456 GCACACGGTGACATGCCA 60.977 61.111 16.29 0.00 35.23 4.92
364 365 2.334946 GCACACGGTGACATGCCAT 61.335 57.895 16.29 0.00 35.23 4.40
365 366 1.865788 GCACACGGTGACATGCCATT 61.866 55.000 16.29 0.00 35.23 3.16
366 367 0.597568 CACACGGTGACATGCCATTT 59.402 50.000 16.29 0.00 35.23 2.32
367 368 0.597568 ACACGGTGACATGCCATTTG 59.402 50.000 16.29 0.00 0.00 2.32
368 369 0.733566 CACGGTGACATGCCATTTGC 60.734 55.000 0.74 0.00 41.77 3.68
378 379 3.429043 GCCATTTGCATGTCACCTG 57.571 52.632 0.00 0.00 40.77 4.00
379 380 0.889994 GCCATTTGCATGTCACCTGA 59.110 50.000 0.00 0.00 40.77 3.86
380 381 1.479323 GCCATTTGCATGTCACCTGAT 59.521 47.619 0.00 0.00 40.77 2.90
381 382 2.480759 GCCATTTGCATGTCACCTGATC 60.481 50.000 0.00 0.00 40.77 2.92
382 383 3.021695 CCATTTGCATGTCACCTGATCT 58.978 45.455 0.00 0.00 0.00 2.75
383 384 3.066342 CCATTTGCATGTCACCTGATCTC 59.934 47.826 0.00 0.00 0.00 2.75
384 385 3.708403 TTTGCATGTCACCTGATCTCT 57.292 42.857 0.00 0.00 0.00 3.10
385 386 4.824479 TTTGCATGTCACCTGATCTCTA 57.176 40.909 0.00 0.00 0.00 2.43
386 387 5.363562 TTTGCATGTCACCTGATCTCTAT 57.636 39.130 0.00 0.00 0.00 1.98
387 388 4.597404 TGCATGTCACCTGATCTCTATC 57.403 45.455 0.00 0.00 0.00 2.08
388 389 3.323115 TGCATGTCACCTGATCTCTATCC 59.677 47.826 0.00 0.00 0.00 2.59
389 390 3.613671 GCATGTCACCTGATCTCTATCCG 60.614 52.174 0.00 0.00 0.00 4.18
390 391 2.587522 TGTCACCTGATCTCTATCCGG 58.412 52.381 0.00 0.00 41.12 5.14
392 393 2.959707 GTCACCTGATCTCTATCCGGTT 59.040 50.000 0.00 0.00 44.68 4.44
393 394 3.004944 GTCACCTGATCTCTATCCGGTTC 59.995 52.174 0.00 0.00 44.68 3.62
394 395 2.030717 CACCTGATCTCTATCCGGTTCG 60.031 54.545 0.00 0.00 44.68 3.95
395 396 3.076360 ACCTGATCTCTATCCGGTTCGG 61.076 54.545 0.00 0.00 44.68 4.30
396 397 5.595046 ACCTGATCTCTATCCGGTTCGGT 62.595 52.174 0.00 0.00 44.68 4.69
404 405 2.266372 CCGGTTCGGTGCATGGTA 59.734 61.111 0.00 0.00 42.73 3.25
405 406 1.813753 CCGGTTCGGTGCATGGTAG 60.814 63.158 0.00 0.00 42.73 3.18
406 407 1.216977 CGGTTCGGTGCATGGTAGA 59.783 57.895 0.00 0.00 0.00 2.59
407 408 0.390603 CGGTTCGGTGCATGGTAGAA 60.391 55.000 0.00 0.00 0.00 2.10
408 409 1.816074 GGTTCGGTGCATGGTAGAAA 58.184 50.000 0.00 0.00 0.00 2.52
409 410 2.156098 GGTTCGGTGCATGGTAGAAAA 58.844 47.619 0.00 0.00 0.00 2.29
414 415 3.016736 CGGTGCATGGTAGAAAATCCTT 58.983 45.455 0.00 0.00 0.00 3.36
446 447 2.633509 GCGTCCTAGTGTCGTGGGT 61.634 63.158 0.00 0.00 0.00 4.51
447 448 1.211969 CGTCCTAGTGTCGTGGGTG 59.788 63.158 0.00 0.00 0.00 4.61
448 449 1.521450 CGTCCTAGTGTCGTGGGTGT 61.521 60.000 0.00 0.00 0.00 4.16
449 450 1.538047 GTCCTAGTGTCGTGGGTGTA 58.462 55.000 0.00 0.00 0.00 2.90
451 452 2.494870 GTCCTAGTGTCGTGGGTGTAAT 59.505 50.000 0.00 0.00 0.00 1.89
452 453 2.756760 TCCTAGTGTCGTGGGTGTAATC 59.243 50.000 0.00 0.00 0.00 1.75
453 454 2.479049 CCTAGTGTCGTGGGTGTAATCG 60.479 54.545 0.00 0.00 0.00 3.34
454 455 0.389426 AGTGTCGTGGGTGTAATCGC 60.389 55.000 0.00 0.00 0.00 4.58
564 576 0.322997 TGTTCCAAGCCGGGGTTATG 60.323 55.000 11.72 6.26 34.36 1.90
708 799 0.384309 CTGATGTCATGCATGTGGGC 59.616 55.000 25.43 14.29 38.06 5.36
768 859 0.175531 GCCGGCCATGTTTTAGCATT 59.824 50.000 18.11 0.00 0.00 3.56
1185 1299 2.569134 GTTCTCGCCGAGCACTCT 59.431 61.111 9.77 0.00 0.00 3.24
1323 1492 8.689061 TCTCGTATTAACCAAGCAGTCTAAATA 58.311 33.333 0.00 0.00 0.00 1.40
1352 1521 7.264373 AGTATGTCTTCTTTTTCAAGTGTGG 57.736 36.000 0.00 0.00 0.00 4.17
1353 1522 4.370364 TGTCTTCTTTTTCAAGTGTGGC 57.630 40.909 0.00 0.00 0.00 5.01
1354 1523 3.130340 TGTCTTCTTTTTCAAGTGTGGCC 59.870 43.478 0.00 0.00 0.00 5.36
1357 1526 4.466015 TCTTCTTTTTCAAGTGTGGCCTTT 59.534 37.500 3.32 0.00 0.00 3.11
1359 1528 4.502962 TCTTTTTCAAGTGTGGCCTTTTG 58.497 39.130 3.32 3.53 0.00 2.44
1361 1530 2.151502 TTCAAGTGTGGCCTTTTGGA 57.848 45.000 3.32 0.00 44.07 3.53
1363 1532 2.238521 TCAAGTGTGGCCTTTTGGATC 58.761 47.619 3.32 0.00 44.07 3.36
1364 1533 2.158475 TCAAGTGTGGCCTTTTGGATCT 60.158 45.455 3.32 0.00 44.07 2.75
1365 1534 2.206576 AGTGTGGCCTTTTGGATCTC 57.793 50.000 3.32 0.00 44.07 2.75
1366 1535 0.804989 GTGTGGCCTTTTGGATCTCG 59.195 55.000 3.32 0.00 44.07 4.04
1367 1536 0.322456 TGTGGCCTTTTGGATCTCGG 60.322 55.000 3.32 0.00 44.07 4.63
1368 1537 1.378514 TGGCCTTTTGGATCTCGGC 60.379 57.895 3.32 0.00 44.07 5.54
1369 1538 1.077429 GGCCTTTTGGATCTCGGCT 60.077 57.895 0.00 0.00 44.07 5.52
1370 1539 0.681243 GGCCTTTTGGATCTCGGCTT 60.681 55.000 0.00 0.00 44.07 4.35
1371 1540 0.735471 GCCTTTTGGATCTCGGCTTC 59.265 55.000 0.00 0.00 44.07 3.86
1372 1541 1.383523 CCTTTTGGATCTCGGCTTCC 58.616 55.000 0.00 0.00 44.07 3.46
1373 1542 1.340017 CCTTTTGGATCTCGGCTTCCA 60.340 52.381 0.00 0.00 44.07 3.53
1374 1543 2.648059 CTTTTGGATCTCGGCTTCCAT 58.352 47.619 0.00 0.00 41.52 3.41
1376 1545 0.181114 TTGGATCTCGGCTTCCATGG 59.819 55.000 4.97 4.97 41.52 3.66
1377 1546 0.690744 TGGATCTCGGCTTCCATGGA 60.691 55.000 11.44 11.44 37.10 3.41
1379 1548 0.034616 GATCTCGGCTTCCATGGAGG 59.965 60.000 19.29 19.29 39.47 4.30
1380 1549 2.049627 ATCTCGGCTTCCATGGAGGC 62.050 60.000 34.61 34.61 44.95 4.70
1382 1551 2.515523 CGGCTTCCATGGAGGCTG 60.516 66.667 38.33 36.79 45.02 4.85
1385 1554 0.106318 GGCTTCCATGGAGGCTGATT 60.106 55.000 38.33 0.00 45.02 2.57
1386 1555 1.687368 GGCTTCCATGGAGGCTGATTT 60.687 52.381 38.33 0.00 45.02 2.17
1387 1556 2.105766 GCTTCCATGGAGGCTGATTTT 58.894 47.619 34.87 0.00 42.82 1.82
1388 1557 2.100418 GCTTCCATGGAGGCTGATTTTC 59.900 50.000 34.87 9.49 42.82 2.29
1389 1558 3.629087 CTTCCATGGAGGCTGATTTTCT 58.371 45.455 15.53 0.00 37.29 2.52
1390 1559 3.008835 TCCATGGAGGCTGATTTTCTG 57.991 47.619 11.44 0.00 37.29 3.02
1393 1562 3.765511 CCATGGAGGCTGATTTTCTGAAA 59.234 43.478 5.56 0.00 0.00 2.69
1394 1563 4.221262 CCATGGAGGCTGATTTTCTGAAAA 59.779 41.667 17.04 17.04 34.41 2.29
1459 2044 4.002906 TGTACAAGTAAGCAAGGAGGTG 57.997 45.455 0.00 0.00 0.00 4.00
1460 2045 3.644265 TGTACAAGTAAGCAAGGAGGTGA 59.356 43.478 0.00 0.00 0.00 4.02
1461 2046 3.409026 ACAAGTAAGCAAGGAGGTGAG 57.591 47.619 0.00 0.00 0.00 3.51
1462 2047 2.039084 ACAAGTAAGCAAGGAGGTGAGG 59.961 50.000 0.00 0.00 0.00 3.86
1464 2049 1.625818 AGTAAGCAAGGAGGTGAGGTG 59.374 52.381 0.00 0.00 0.00 4.00
1466 2051 1.729586 AAGCAAGGAGGTGAGGTGTA 58.270 50.000 0.00 0.00 0.00 2.90
1468 2053 1.556911 AGCAAGGAGGTGAGGTGTATG 59.443 52.381 0.00 0.00 0.00 2.39
1470 2055 2.936993 GCAAGGAGGTGAGGTGTATGTG 60.937 54.545 0.00 0.00 0.00 3.21
1472 2057 1.902508 AGGAGGTGAGGTGTATGTGTG 59.097 52.381 0.00 0.00 0.00 3.82
1474 2059 2.829720 GGAGGTGAGGTGTATGTGTGTA 59.170 50.000 0.00 0.00 0.00 2.90
1475 2060 3.259876 GGAGGTGAGGTGTATGTGTGTAA 59.740 47.826 0.00 0.00 0.00 2.41
1478 2063 5.245531 AGGTGAGGTGTATGTGTGTAAATG 58.754 41.667 0.00 0.00 0.00 2.32
1479 2064 5.001232 GGTGAGGTGTATGTGTGTAAATGT 58.999 41.667 0.00 0.00 0.00 2.71
1482 2067 6.203915 GTGAGGTGTATGTGTGTAAATGTTCA 59.796 38.462 0.00 0.00 0.00 3.18
1483 2068 6.426633 TGAGGTGTATGTGTGTAAATGTTCAG 59.573 38.462 0.00 0.00 0.00 3.02
1643 2345 5.215160 GCTAAAAACAGAAGTCCATGTGTG 58.785 41.667 0.00 0.00 0.00 3.82
1645 2347 4.900635 AAAACAGAAGTCCATGTGTGAC 57.099 40.909 0.00 0.00 0.00 3.67
2053 2761 3.386768 AATATGTCCGACCCGAGAATG 57.613 47.619 0.00 0.00 0.00 2.67
2383 3596 1.407258 TGGCCAACAAAGTACAAGCAC 59.593 47.619 0.61 0.00 0.00 4.40
2458 3671 7.942894 ACTTTACACTAGCAAAATATATCCCCC 59.057 37.037 0.00 0.00 0.00 5.40
2566 4120 8.980481 TTAATCCCAGGAATTCTATTGAAGAC 57.020 34.615 5.23 0.00 35.44 3.01
2707 4261 1.228521 CCCTCCATGCACAACCACA 60.229 57.895 0.00 0.00 0.00 4.17
2820 4374 4.593033 GCATGGTGCATGGATCCT 57.407 55.556 14.23 0.00 44.26 3.24
2845 4399 3.199551 CCACGGGGTGATGCATTG 58.800 61.111 0.00 0.00 35.23 2.82
2952 5213 4.282449 TGAGAGTGTTTTATTGACCCGAGA 59.718 41.667 0.00 0.00 0.00 4.04
2955 5216 4.566987 AGTGTTTTATTGACCCGAGAGAC 58.433 43.478 0.00 0.00 0.00 3.36
3204 5902 6.761714 AGTACGATGGAATAATTTCACCAGTC 59.238 38.462 0.00 0.00 35.84 3.51
3334 6032 6.653320 TGCTAAGTTATCCCAAATATAAGGCG 59.347 38.462 0.00 0.00 0.00 5.52
3402 6100 9.133627 GAATTTTGATGCTTCCTTTACTCTTTC 57.866 33.333 0.00 0.00 0.00 2.62
4021 6729 6.789959 ACTGGGTGATTATAAAGGAGCTCTAT 59.210 38.462 14.64 6.45 0.00 1.98
4023 6731 8.736097 TGGGTGATTATAAAGGAGCTCTATAA 57.264 34.615 14.64 13.86 0.00 0.98
4117 6825 1.677637 CTCTGGGCCCTCTCGGTAAC 61.678 65.000 25.70 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.084925 GCACTCAGATTCACAAGAAATTCAG 58.915 40.000 0.00 0.00 37.29 3.02
2 3 6.005583 TGCACTCAGATTCACAAGAAATTC 57.994 37.500 0.00 0.00 37.29 2.17
4 5 6.183360 TGTTTGCACTCAGATTCACAAGAAAT 60.183 34.615 0.00 0.00 37.29 2.17
5 6 5.125257 TGTTTGCACTCAGATTCACAAGAAA 59.875 36.000 0.00 0.00 37.29 2.52
6 7 4.639755 TGTTTGCACTCAGATTCACAAGAA 59.360 37.500 0.00 0.00 38.31 2.52
7 8 4.198530 TGTTTGCACTCAGATTCACAAGA 58.801 39.130 0.00 0.00 0.00 3.02
13 14 7.324616 GTCAAAATACTGTTTGCACTCAGATTC 59.675 37.037 19.84 4.82 38.20 2.52
15 16 6.488006 AGTCAAAATACTGTTTGCACTCAGAT 59.512 34.615 19.84 9.19 38.20 2.90
16 17 5.822519 AGTCAAAATACTGTTTGCACTCAGA 59.177 36.000 19.84 7.69 38.20 3.27
17 18 5.911280 CAGTCAAAATACTGTTTGCACTCAG 59.089 40.000 13.63 13.63 41.63 3.35
18 19 5.820131 CAGTCAAAATACTGTTTGCACTCA 58.180 37.500 0.00 0.00 41.63 3.41
29 30 4.339247 AGTGCAAGCAACAGTCAAAATACT 59.661 37.500 0.00 0.00 0.00 2.12
30 31 4.442073 CAGTGCAAGCAACAGTCAAAATAC 59.558 41.667 0.00 0.00 0.00 1.89
31 32 4.097741 ACAGTGCAAGCAACAGTCAAAATA 59.902 37.500 0.00 0.00 0.00 1.40
32 33 3.119029 ACAGTGCAAGCAACAGTCAAAAT 60.119 39.130 0.00 0.00 0.00 1.82
33 34 2.230992 ACAGTGCAAGCAACAGTCAAAA 59.769 40.909 0.00 0.00 0.00 2.44
34 35 1.818060 ACAGTGCAAGCAACAGTCAAA 59.182 42.857 0.00 0.00 0.00 2.69
35 36 1.462616 ACAGTGCAAGCAACAGTCAA 58.537 45.000 0.00 0.00 0.00 3.18
36 37 1.462616 AACAGTGCAAGCAACAGTCA 58.537 45.000 0.00 0.00 0.00 3.41
37 38 2.454055 GAAACAGTGCAAGCAACAGTC 58.546 47.619 0.00 0.00 0.00 3.51
38 39 1.134946 GGAAACAGTGCAAGCAACAGT 59.865 47.619 0.00 0.00 0.00 3.55
39 40 1.843992 GGAAACAGTGCAAGCAACAG 58.156 50.000 0.00 0.00 0.00 3.16
40 41 0.100325 CGGAAACAGTGCAAGCAACA 59.900 50.000 0.00 0.00 0.00 3.33
41 42 0.594796 CCGGAAACAGTGCAAGCAAC 60.595 55.000 0.00 0.00 0.00 4.17
42 43 0.749818 TCCGGAAACAGTGCAAGCAA 60.750 50.000 0.00 0.00 0.00 3.91
43 44 1.153066 TCCGGAAACAGTGCAAGCA 60.153 52.632 0.00 0.00 0.00 3.91
44 45 1.166531 AGTCCGGAAACAGTGCAAGC 61.167 55.000 5.23 0.00 0.00 4.01
45 46 2.163818 TAGTCCGGAAACAGTGCAAG 57.836 50.000 5.23 0.00 0.00 4.01
46 47 2.623878 TTAGTCCGGAAACAGTGCAA 57.376 45.000 5.23 0.00 0.00 4.08
47 48 2.623878 TTTAGTCCGGAAACAGTGCA 57.376 45.000 5.23 0.00 0.00 4.57
48 49 2.225727 CCTTTTAGTCCGGAAACAGTGC 59.774 50.000 5.23 0.00 0.00 4.40
49 50 3.473625 ACCTTTTAGTCCGGAAACAGTG 58.526 45.455 5.23 0.00 0.00 3.66
50 51 3.851458 ACCTTTTAGTCCGGAAACAGT 57.149 42.857 5.23 0.00 0.00 3.55
51 52 4.131596 TCAACCTTTTAGTCCGGAAACAG 58.868 43.478 5.23 0.00 0.00 3.16
52 53 4.153673 TCAACCTTTTAGTCCGGAAACA 57.846 40.909 5.23 0.00 0.00 2.83
53 54 4.517832 ACATCAACCTTTTAGTCCGGAAAC 59.482 41.667 5.23 0.00 0.00 2.78
54 55 4.721132 ACATCAACCTTTTAGTCCGGAAA 58.279 39.130 5.23 0.00 0.00 3.13
55 56 4.360951 ACATCAACCTTTTAGTCCGGAA 57.639 40.909 5.23 0.00 0.00 4.30
56 57 4.360951 AACATCAACCTTTTAGTCCGGA 57.639 40.909 0.00 0.00 0.00 5.14
57 58 4.277423 ACAAACATCAACCTTTTAGTCCGG 59.723 41.667 0.00 0.00 0.00 5.14
58 59 5.432885 ACAAACATCAACCTTTTAGTCCG 57.567 39.130 0.00 0.00 0.00 4.79
59 60 8.357402 ACAATACAAACATCAACCTTTTAGTCC 58.643 33.333 0.00 0.00 0.00 3.85
60 61 9.180678 CACAATACAAACATCAACCTTTTAGTC 57.819 33.333 0.00 0.00 0.00 2.59
61 62 8.691797 ACACAATACAAACATCAACCTTTTAGT 58.308 29.630 0.00 0.00 0.00 2.24
62 63 9.528018 AACACAATACAAACATCAACCTTTTAG 57.472 29.630 0.00 0.00 0.00 1.85
63 64 9.877178 AAACACAATACAAACATCAACCTTTTA 57.123 25.926 0.00 0.00 0.00 1.52
64 65 8.785329 AAACACAATACAAACATCAACCTTTT 57.215 26.923 0.00 0.00 0.00 2.27
65 66 8.663911 CAAAACACAATACAAACATCAACCTTT 58.336 29.630 0.00 0.00 0.00 3.11
66 67 7.821846 ACAAAACACAATACAAACATCAACCTT 59.178 29.630 0.00 0.00 0.00 3.50
67 68 7.327214 ACAAAACACAATACAAACATCAACCT 58.673 30.769 0.00 0.00 0.00 3.50
68 69 7.532682 ACAAAACACAATACAAACATCAACC 57.467 32.000 0.00 0.00 0.00 3.77
69 70 8.651588 TGAACAAAACACAATACAAACATCAAC 58.348 29.630 0.00 0.00 0.00 3.18
70 71 8.763049 TGAACAAAACACAATACAAACATCAA 57.237 26.923 0.00 0.00 0.00 2.57
71 72 8.763049 TTGAACAAAACACAATACAAACATCA 57.237 26.923 0.00 0.00 0.00 3.07
87 88 7.210873 AGTACAACCAAGTGTTTTGAACAAAA 58.789 30.769 8.37 8.37 44.16 2.44
88 89 6.750148 AGTACAACCAAGTGTTTTGAACAAA 58.250 32.000 0.00 0.00 44.16 2.83
89 90 6.334102 AGTACAACCAAGTGTTTTGAACAA 57.666 33.333 0.00 0.00 44.16 2.83
90 91 5.968528 AGTACAACCAAGTGTTTTGAACA 57.031 34.783 0.00 0.00 39.52 3.18
91 92 8.185505 TCAATAGTACAACCAAGTGTTTTGAAC 58.814 33.333 0.00 0.00 34.00 3.18
92 93 8.282455 TCAATAGTACAACCAAGTGTTTTGAA 57.718 30.769 0.00 0.00 34.00 2.69
93 94 7.867305 TCAATAGTACAACCAAGTGTTTTGA 57.133 32.000 0.00 0.00 34.00 2.69
107 108 9.124807 CGCGACTCATTTATATTCAATAGTACA 57.875 33.333 0.00 0.00 0.00 2.90
108 109 9.125906 ACGCGACTCATTTATATTCAATAGTAC 57.874 33.333 15.93 0.00 0.00 2.73
109 110 9.124807 CACGCGACTCATTTATATTCAATAGTA 57.875 33.333 15.93 0.00 0.00 1.82
110 111 7.652105 ACACGCGACTCATTTATATTCAATAGT 59.348 33.333 15.93 0.00 0.00 2.12
111 112 8.007821 ACACGCGACTCATTTATATTCAATAG 57.992 34.615 15.93 0.00 0.00 1.73
112 113 7.940178 ACACGCGACTCATTTATATTCAATA 57.060 32.000 15.93 0.00 0.00 1.90
113 114 6.844696 ACACGCGACTCATTTATATTCAAT 57.155 33.333 15.93 0.00 0.00 2.57
114 115 6.656314 AACACGCGACTCATTTATATTCAA 57.344 33.333 15.93 0.00 0.00 2.69
115 116 6.456315 CCAAACACGCGACTCATTTATATTCA 60.456 38.462 15.93 0.00 0.00 2.57
116 117 5.901884 CCAAACACGCGACTCATTTATATTC 59.098 40.000 15.93 0.00 0.00 1.75
117 118 5.220777 CCCAAACACGCGACTCATTTATATT 60.221 40.000 15.93 0.00 0.00 1.28
118 119 4.272504 CCCAAACACGCGACTCATTTATAT 59.727 41.667 15.93 0.00 0.00 0.86
119 120 3.619483 CCCAAACACGCGACTCATTTATA 59.381 43.478 15.93 0.00 0.00 0.98
120 121 2.418628 CCCAAACACGCGACTCATTTAT 59.581 45.455 15.93 0.00 0.00 1.40
121 122 1.801771 CCCAAACACGCGACTCATTTA 59.198 47.619 15.93 0.00 0.00 1.40
122 123 0.591170 CCCAAACACGCGACTCATTT 59.409 50.000 15.93 2.39 0.00 2.32
123 124 1.852067 GCCCAAACACGCGACTCATT 61.852 55.000 15.93 0.00 0.00 2.57
124 125 2.325082 GCCCAAACACGCGACTCAT 61.325 57.895 15.93 0.00 0.00 2.90
125 126 2.970324 GCCCAAACACGCGACTCA 60.970 61.111 15.93 0.00 0.00 3.41
126 127 2.665185 AGCCCAAACACGCGACTC 60.665 61.111 15.93 0.00 0.00 3.36
127 128 2.933878 TTCAGCCCAAACACGCGACT 62.934 55.000 15.93 0.00 0.00 4.18
128 129 2.054140 TTTCAGCCCAAACACGCGAC 62.054 55.000 15.93 0.00 0.00 5.19
129 130 1.377366 TTTTCAGCCCAAACACGCGA 61.377 50.000 15.93 0.00 0.00 5.87
130 131 0.318614 ATTTTCAGCCCAAACACGCG 60.319 50.000 3.53 3.53 0.00 6.01
131 132 1.864565 AATTTTCAGCCCAAACACGC 58.135 45.000 0.00 0.00 0.00 5.34
132 133 3.194062 ACAAATTTTCAGCCCAAACACG 58.806 40.909 0.00 0.00 0.00 4.49
133 134 5.106357 ACAAACAAATTTTCAGCCCAAACAC 60.106 36.000 0.00 0.00 0.00 3.32
134 135 5.006386 ACAAACAAATTTTCAGCCCAAACA 58.994 33.333 0.00 0.00 0.00 2.83
135 136 5.559427 ACAAACAAATTTTCAGCCCAAAC 57.441 34.783 0.00 0.00 0.00 2.93
136 137 6.314896 CAGTACAAACAAATTTTCAGCCCAAA 59.685 34.615 0.00 0.00 0.00 3.28
137 138 5.814705 CAGTACAAACAAATTTTCAGCCCAA 59.185 36.000 0.00 0.00 0.00 4.12
138 139 5.105146 ACAGTACAAACAAATTTTCAGCCCA 60.105 36.000 0.00 0.00 0.00 5.36
139 140 5.356426 ACAGTACAAACAAATTTTCAGCCC 58.644 37.500 0.00 0.00 0.00 5.19
140 141 6.533367 TCAACAGTACAAACAAATTTTCAGCC 59.467 34.615 0.00 0.00 0.00 4.85
141 142 7.518731 TCAACAGTACAAACAAATTTTCAGC 57.481 32.000 0.00 0.00 0.00 4.26
152 153 9.556030 GCCTCTTTTATATTCAACAGTACAAAC 57.444 33.333 0.00 0.00 0.00 2.93
153 154 8.447833 CGCCTCTTTTATATTCAACAGTACAAA 58.552 33.333 0.00 0.00 0.00 2.83
154 155 7.065324 CCGCCTCTTTTATATTCAACAGTACAA 59.935 37.037 0.00 0.00 0.00 2.41
155 156 6.537301 CCGCCTCTTTTATATTCAACAGTACA 59.463 38.462 0.00 0.00 0.00 2.90
156 157 6.537660 ACCGCCTCTTTTATATTCAACAGTAC 59.462 38.462 0.00 0.00 0.00 2.73
157 158 6.646267 ACCGCCTCTTTTATATTCAACAGTA 58.354 36.000 0.00 0.00 0.00 2.74
158 159 5.497474 ACCGCCTCTTTTATATTCAACAGT 58.503 37.500 0.00 0.00 0.00 3.55
159 160 6.436843 AACCGCCTCTTTTATATTCAACAG 57.563 37.500 0.00 0.00 0.00 3.16
160 161 6.207810 ACAAACCGCCTCTTTTATATTCAACA 59.792 34.615 0.00 0.00 0.00 3.33
161 162 6.617879 ACAAACCGCCTCTTTTATATTCAAC 58.382 36.000 0.00 0.00 0.00 3.18
162 163 6.827586 ACAAACCGCCTCTTTTATATTCAA 57.172 33.333 0.00 0.00 0.00 2.69
163 164 7.065324 CAGTACAAACCGCCTCTTTTATATTCA 59.935 37.037 0.00 0.00 0.00 2.57
164 165 7.065443 ACAGTACAAACCGCCTCTTTTATATTC 59.935 37.037 0.00 0.00 0.00 1.75
165 166 6.882678 ACAGTACAAACCGCCTCTTTTATATT 59.117 34.615 0.00 0.00 0.00 1.28
166 167 6.412214 ACAGTACAAACCGCCTCTTTTATAT 58.588 36.000 0.00 0.00 0.00 0.86
167 168 5.797051 ACAGTACAAACCGCCTCTTTTATA 58.203 37.500 0.00 0.00 0.00 0.98
168 169 4.648651 ACAGTACAAACCGCCTCTTTTAT 58.351 39.130 0.00 0.00 0.00 1.40
169 170 4.075963 ACAGTACAAACCGCCTCTTTTA 57.924 40.909 0.00 0.00 0.00 1.52
170 171 2.927028 ACAGTACAAACCGCCTCTTTT 58.073 42.857 0.00 0.00 0.00 2.27
171 172 2.616842 CAACAGTACAAACCGCCTCTTT 59.383 45.455 0.00 0.00 0.00 2.52
172 173 2.158871 TCAACAGTACAAACCGCCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
173 174 1.414919 TCAACAGTACAAACCGCCTCT 59.585 47.619 0.00 0.00 0.00 3.69
174 175 1.873698 TCAACAGTACAAACCGCCTC 58.126 50.000 0.00 0.00 0.00 4.70
175 176 2.335316 TTCAACAGTACAAACCGCCT 57.665 45.000 0.00 0.00 0.00 5.52
176 177 4.957759 ATATTCAACAGTACAAACCGCC 57.042 40.909 0.00 0.00 0.00 6.13
177 178 8.231837 TCTTTTATATTCAACAGTACAAACCGC 58.768 33.333 0.00 0.00 0.00 5.68
231 232 5.091261 AGACACTCTGAAACTTCACAGTT 57.909 39.130 0.00 0.00 45.89 3.16
232 233 4.744795 AGACACTCTGAAACTTCACAGT 57.255 40.909 0.00 0.00 36.98 3.55
233 234 5.226396 CCTAGACACTCTGAAACTTCACAG 58.774 45.833 0.00 0.00 32.90 3.66
234 235 4.501571 GCCTAGACACTCTGAAACTTCACA 60.502 45.833 0.00 0.00 32.90 3.58
235 236 3.991121 GCCTAGACACTCTGAAACTTCAC 59.009 47.826 0.00 0.00 32.90 3.18
236 237 3.898123 AGCCTAGACACTCTGAAACTTCA 59.102 43.478 0.00 0.00 35.57 3.02
237 238 4.021894 TCAGCCTAGACACTCTGAAACTTC 60.022 45.833 0.00 0.00 33.17 3.01
238 239 3.898123 TCAGCCTAGACACTCTGAAACTT 59.102 43.478 0.00 0.00 33.17 2.66
239 240 3.501349 TCAGCCTAGACACTCTGAAACT 58.499 45.455 0.00 0.00 33.17 2.66
240 241 3.944055 TCAGCCTAGACACTCTGAAAC 57.056 47.619 0.00 0.00 33.17 2.78
241 242 4.955811 TTTCAGCCTAGACACTCTGAAA 57.044 40.909 10.95 10.95 46.81 2.69
242 243 4.345257 AGTTTTCAGCCTAGACACTCTGAA 59.655 41.667 0.00 0.00 41.95 3.02
243 244 3.898123 AGTTTTCAGCCTAGACACTCTGA 59.102 43.478 0.00 0.00 34.16 3.27
244 245 3.993081 CAGTTTTCAGCCTAGACACTCTG 59.007 47.826 0.00 0.00 0.00 3.35
245 246 3.643792 ACAGTTTTCAGCCTAGACACTCT 59.356 43.478 0.00 0.00 0.00 3.24
246 247 3.743396 CACAGTTTTCAGCCTAGACACTC 59.257 47.826 0.00 0.00 0.00 3.51
247 248 3.388024 TCACAGTTTTCAGCCTAGACACT 59.612 43.478 0.00 0.00 0.00 3.55
248 249 3.728845 TCACAGTTTTCAGCCTAGACAC 58.271 45.455 0.00 0.00 0.00 3.67
249 250 4.141711 ACTTCACAGTTTTCAGCCTAGACA 60.142 41.667 0.00 0.00 0.00 3.41
250 251 4.381411 ACTTCACAGTTTTCAGCCTAGAC 58.619 43.478 0.00 0.00 0.00 2.59
251 252 4.345257 AGACTTCACAGTTTTCAGCCTAGA 59.655 41.667 0.00 0.00 31.22 2.43
252 253 4.450419 CAGACTTCACAGTTTTCAGCCTAG 59.550 45.833 0.00 0.00 31.22 3.02
253 254 4.100963 TCAGACTTCACAGTTTTCAGCCTA 59.899 41.667 0.00 0.00 31.22 3.93
254 255 3.118261 TCAGACTTCACAGTTTTCAGCCT 60.118 43.478 0.00 0.00 31.22 4.58
255 256 3.206150 TCAGACTTCACAGTTTTCAGCC 58.794 45.455 0.00 0.00 31.22 4.85
256 257 4.882671 TTCAGACTTCACAGTTTTCAGC 57.117 40.909 0.00 0.00 31.22 4.26
257 258 6.369059 ACATTCAGACTTCACAGTTTTCAG 57.631 37.500 0.00 0.00 31.22 3.02
258 259 6.150976 ACAACATTCAGACTTCACAGTTTTCA 59.849 34.615 0.00 0.00 31.22 2.69
259 260 6.555315 ACAACATTCAGACTTCACAGTTTTC 58.445 36.000 0.00 0.00 31.22 2.29
260 261 6.515272 ACAACATTCAGACTTCACAGTTTT 57.485 33.333 0.00 0.00 31.22 2.43
261 262 6.515272 AACAACATTCAGACTTCACAGTTT 57.485 33.333 0.00 0.00 31.22 2.66
262 263 6.515272 AAACAACATTCAGACTTCACAGTT 57.485 33.333 0.00 0.00 31.22 3.16
263 264 6.515272 AAAACAACATTCAGACTTCACAGT 57.485 33.333 0.00 0.00 35.17 3.55
264 265 6.237648 GCAAAAACAACATTCAGACTTCACAG 60.238 38.462 0.00 0.00 0.00 3.66
265 266 5.576384 GCAAAAACAACATTCAGACTTCACA 59.424 36.000 0.00 0.00 0.00 3.58
266 267 5.807011 AGCAAAAACAACATTCAGACTTCAC 59.193 36.000 0.00 0.00 0.00 3.18
267 268 5.964758 AGCAAAAACAACATTCAGACTTCA 58.035 33.333 0.00 0.00 0.00 3.02
268 269 6.892310 AAGCAAAAACAACATTCAGACTTC 57.108 33.333 0.00 0.00 0.00 3.01
269 270 6.092533 CCAAAGCAAAAACAACATTCAGACTT 59.907 34.615 0.00 0.00 0.00 3.01
270 271 5.581874 CCAAAGCAAAAACAACATTCAGACT 59.418 36.000 0.00 0.00 0.00 3.24
271 272 5.580297 TCCAAAGCAAAAACAACATTCAGAC 59.420 36.000 0.00 0.00 0.00 3.51
272 273 5.728471 TCCAAAGCAAAAACAACATTCAGA 58.272 33.333 0.00 0.00 0.00 3.27
273 274 6.419980 TTCCAAAGCAAAAACAACATTCAG 57.580 33.333 0.00 0.00 0.00 3.02
274 275 6.808008 TTTCCAAAGCAAAAACAACATTCA 57.192 29.167 0.00 0.00 0.00 2.57
289 290 0.239347 CGGACAGCAGCTTTCCAAAG 59.761 55.000 24.50 7.39 39.03 2.77
290 291 0.465460 ACGGACAGCAGCTTTCCAAA 60.465 50.000 24.50 0.00 0.00 3.28
291 292 0.465460 AACGGACAGCAGCTTTCCAA 60.465 50.000 24.50 0.00 0.00 3.53
292 293 1.148273 AACGGACAGCAGCTTTCCA 59.852 52.632 24.50 0.00 0.00 3.53
293 294 1.576421 CAACGGACAGCAGCTTTCC 59.424 57.895 16.73 16.73 0.00 3.13
294 295 0.884704 TCCAACGGACAGCAGCTTTC 60.885 55.000 0.00 0.00 0.00 2.62
295 296 0.250901 ATCCAACGGACAGCAGCTTT 60.251 50.000 0.00 0.00 32.98 3.51
296 297 0.957395 CATCCAACGGACAGCAGCTT 60.957 55.000 0.00 0.00 32.98 3.74
297 298 1.376424 CATCCAACGGACAGCAGCT 60.376 57.895 0.00 0.00 32.98 4.24
298 299 3.044059 GCATCCAACGGACAGCAGC 62.044 63.158 4.83 0.00 36.50 5.25
299 300 1.672030 TGCATCCAACGGACAGCAG 60.672 57.895 7.64 0.00 39.85 4.24
300 301 1.672030 CTGCATCCAACGGACAGCA 60.672 57.895 10.48 10.48 41.55 4.41
301 302 2.401766 CCTGCATCCAACGGACAGC 61.402 63.158 0.00 3.09 36.85 4.40
302 303 2.401766 GCCTGCATCCAACGGACAG 61.402 63.158 0.00 0.00 32.98 3.51
303 304 2.359850 GCCTGCATCCAACGGACA 60.360 61.111 0.00 0.00 32.98 4.02
304 305 2.045926 AGCCTGCATCCAACGGAC 60.046 61.111 0.00 0.00 32.98 4.79
305 306 2.046023 CAGCCTGCATCCAACGGA 60.046 61.111 0.00 0.00 35.55 4.69
306 307 3.136123 CCAGCCTGCATCCAACGG 61.136 66.667 0.00 0.00 0.00 4.44
307 308 3.136123 CCCAGCCTGCATCCAACG 61.136 66.667 0.00 0.00 0.00 4.10
308 309 3.455469 GCCCAGCCTGCATCCAAC 61.455 66.667 0.00 0.00 0.00 3.77
318 319 4.864334 CTCATCCACCGCCCAGCC 62.864 72.222 0.00 0.00 0.00 4.85
319 320 3.746949 CTCTCATCCACCGCCCAGC 62.747 68.421 0.00 0.00 0.00 4.85
320 321 2.503061 CTCTCATCCACCGCCCAG 59.497 66.667 0.00 0.00 0.00 4.45
321 322 3.083349 CCTCTCATCCACCGCCCA 61.083 66.667 0.00 0.00 0.00 5.36
322 323 4.554036 GCCTCTCATCCACCGCCC 62.554 72.222 0.00 0.00 0.00 6.13
323 324 4.554036 GGCCTCTCATCCACCGCC 62.554 72.222 0.00 0.00 0.00 6.13
324 325 4.899239 CGGCCTCTCATCCACCGC 62.899 72.222 0.00 0.00 37.05 5.68
325 326 4.899239 GCGGCCTCTCATCCACCG 62.899 72.222 0.00 0.00 46.50 4.94
326 327 4.899239 CGCGGCCTCTCATCCACC 62.899 72.222 0.00 0.00 0.00 4.61
327 328 3.781770 CTCGCGGCCTCTCATCCAC 62.782 68.421 6.13 0.00 0.00 4.02
328 329 3.531207 CTCGCGGCCTCTCATCCA 61.531 66.667 6.13 0.00 0.00 3.41
329 330 4.292178 CCTCGCGGCCTCTCATCC 62.292 72.222 6.13 0.00 0.00 3.51
341 342 4.961511 TGTCACCGTGTGCCTCGC 62.962 66.667 0.00 0.00 32.98 5.03
342 343 2.048222 ATGTCACCGTGTGCCTCG 60.048 61.111 0.00 0.00 32.98 4.63
343 344 2.680913 GCATGTCACCGTGTGCCTC 61.681 63.158 0.00 0.00 32.98 4.70
344 345 2.669569 GCATGTCACCGTGTGCCT 60.670 61.111 0.00 0.00 32.98 4.75
346 347 1.865788 AATGGCATGTCACCGTGTGC 61.866 55.000 0.00 4.42 36.88 4.57
347 348 0.597568 AAATGGCATGTCACCGTGTG 59.402 50.000 0.00 0.00 34.45 3.82
348 349 0.597568 CAAATGGCATGTCACCGTGT 59.402 50.000 0.00 0.00 0.00 4.49
349 350 0.733566 GCAAATGGCATGTCACCGTG 60.734 55.000 0.00 1.89 43.97 4.94
350 351 1.586028 GCAAATGGCATGTCACCGT 59.414 52.632 0.00 0.00 43.97 4.83
351 352 4.481870 GCAAATGGCATGTCACCG 57.518 55.556 0.00 0.00 43.97 4.94
360 361 0.889994 TCAGGTGACATGCAAATGGC 59.110 50.000 0.00 0.00 45.13 4.40
361 362 3.021695 AGATCAGGTGACATGCAAATGG 58.978 45.455 0.00 0.00 0.00 3.16
362 363 3.945921 AGAGATCAGGTGACATGCAAATG 59.054 43.478 0.00 0.00 0.00 2.32
363 364 4.232188 AGAGATCAGGTGACATGCAAAT 57.768 40.909 0.00 0.00 0.00 2.32
364 365 3.708403 AGAGATCAGGTGACATGCAAA 57.292 42.857 0.00 0.00 0.00 3.68
365 366 4.202295 GGATAGAGATCAGGTGACATGCAA 60.202 45.833 0.00 0.00 33.27 4.08
366 367 3.323115 GGATAGAGATCAGGTGACATGCA 59.677 47.826 0.00 0.00 33.27 3.96
367 368 3.613671 CGGATAGAGATCAGGTGACATGC 60.614 52.174 0.00 0.00 33.27 4.06
368 369 3.056962 CCGGATAGAGATCAGGTGACATG 60.057 52.174 0.00 0.00 41.22 3.21
369 370 3.161067 CCGGATAGAGATCAGGTGACAT 58.839 50.000 0.00 0.00 41.22 3.06
370 371 2.587522 CCGGATAGAGATCAGGTGACA 58.412 52.381 0.00 0.00 41.22 3.58
388 389 0.390603 TTCTACCATGCACCGAACCG 60.391 55.000 0.00 0.00 0.00 4.44
389 390 1.816074 TTTCTACCATGCACCGAACC 58.184 50.000 0.00 0.00 0.00 3.62
390 391 3.181500 GGATTTTCTACCATGCACCGAAC 60.181 47.826 0.00 0.00 0.00 3.95
391 392 3.013921 GGATTTTCTACCATGCACCGAA 58.986 45.455 0.00 0.00 0.00 4.30
392 393 2.238646 AGGATTTTCTACCATGCACCGA 59.761 45.455 0.00 0.00 0.00 4.69
393 394 2.643551 AGGATTTTCTACCATGCACCG 58.356 47.619 0.00 0.00 0.00 4.94
394 395 4.998788 GAAAGGATTTTCTACCATGCACC 58.001 43.478 0.00 0.00 39.27 5.01
405 406 2.414161 CGGGCGTGAAGAAAGGATTTTC 60.414 50.000 0.00 0.00 39.27 2.29
406 407 1.539827 CGGGCGTGAAGAAAGGATTTT 59.460 47.619 0.00 0.00 39.27 1.82
407 408 1.165270 CGGGCGTGAAGAAAGGATTT 58.835 50.000 0.00 0.00 43.98 2.17
408 409 1.305930 GCGGGCGTGAAGAAAGGATT 61.306 55.000 0.00 0.00 0.00 3.01
409 410 1.745489 GCGGGCGTGAAGAAAGGAT 60.745 57.895 0.00 0.00 0.00 3.24
431 432 2.291209 TTACACCCACGACACTAGGA 57.709 50.000 0.00 0.00 0.00 2.94
434 435 1.135315 GCGATTACACCCACGACACTA 60.135 52.381 0.00 0.00 0.00 2.74
453 454 1.009675 CGCATTTGGAGCATACGGC 60.010 57.895 0.00 0.00 45.30 5.68
454 455 0.732571 AACGCATTTGGAGCATACGG 59.267 50.000 0.00 0.00 0.00 4.02
564 576 2.865343 ATGAGATGGAACGGACGTAC 57.135 50.000 0.00 0.00 0.00 3.67
617 629 2.037251 AGAAATGCAGTACAGACCACGT 59.963 45.455 0.00 0.00 0.00 4.49
618 630 2.413112 CAGAAATGCAGTACAGACCACG 59.587 50.000 0.00 0.00 0.00 4.94
619 631 2.160417 GCAGAAATGCAGTACAGACCAC 59.840 50.000 0.00 0.00 34.41 4.16
626 638 0.097674 CGGCAGCAGAAATGCAGTAC 59.902 55.000 2.73 0.00 45.68 2.73
644 659 4.347813 CCTGGTTTACAGTGTTTCAAACG 58.652 43.478 0.00 0.00 46.06 3.60
708 799 4.451900 ACGGGGATAGAATACTTTTGCAG 58.548 43.478 0.00 0.00 0.00 4.41
759 850 2.080693 ACGCACCGATCAATGCTAAAA 58.919 42.857 14.40 0.00 39.79 1.52
768 859 1.374125 CAGTTGGACGCACCGATCA 60.374 57.895 0.00 0.00 42.61 2.92
1185 1299 0.459899 CGATCACCGGAACCTCATCA 59.540 55.000 9.46 0.00 33.91 3.07
1345 1514 2.519013 GAGATCCAAAAGGCCACACTT 58.481 47.619 5.01 0.00 0.00 3.16
1346 1515 1.611673 CGAGATCCAAAAGGCCACACT 60.612 52.381 5.01 0.00 0.00 3.55
1347 1516 0.804989 CGAGATCCAAAAGGCCACAC 59.195 55.000 5.01 0.00 0.00 3.82
1348 1517 0.322456 CCGAGATCCAAAAGGCCACA 60.322 55.000 5.01 0.00 0.00 4.17
1349 1518 1.657751 GCCGAGATCCAAAAGGCCAC 61.658 60.000 5.01 0.00 41.81 5.01
1350 1519 1.378514 GCCGAGATCCAAAAGGCCA 60.379 57.895 5.01 0.00 41.81 5.36
1351 1520 3.514417 GCCGAGATCCAAAAGGCC 58.486 61.111 0.00 0.00 41.81 5.19
1353 1522 1.340017 TGGAAGCCGAGATCCAAAAGG 60.340 52.381 1.21 0.00 42.61 3.11
1354 1523 2.113860 TGGAAGCCGAGATCCAAAAG 57.886 50.000 1.21 0.00 42.61 2.27
1359 1528 0.034616 CTCCATGGAAGCCGAGATCC 59.965 60.000 17.00 0.00 36.21 3.36
1361 1530 2.049627 GCCTCCATGGAAGCCGAGAT 62.050 60.000 22.79 0.00 38.35 2.75
1363 1532 2.203126 GCCTCCATGGAAGCCGAG 60.203 66.667 22.79 6.75 38.35 4.63
1364 1533 2.688666 AGCCTCCATGGAAGCCGA 60.689 61.111 28.18 0.00 38.35 5.54
1365 1534 2.335092 ATCAGCCTCCATGGAAGCCG 62.335 60.000 28.18 20.25 38.35 5.52
1366 1535 0.106318 AATCAGCCTCCATGGAAGCC 60.106 55.000 28.18 13.63 38.35 4.35
1367 1536 1.772836 AAATCAGCCTCCATGGAAGC 58.227 50.000 25.33 25.33 38.35 3.86
1368 1537 3.380637 CAGAAAATCAGCCTCCATGGAAG 59.619 47.826 17.00 11.38 38.35 3.46
1369 1538 3.010472 TCAGAAAATCAGCCTCCATGGAA 59.990 43.478 17.00 0.00 38.35 3.53
1370 1539 2.577563 TCAGAAAATCAGCCTCCATGGA 59.422 45.455 15.27 15.27 38.35 3.41
1371 1540 3.008835 TCAGAAAATCAGCCTCCATGG 57.991 47.619 4.97 4.97 39.35 3.66
1372 1541 5.395682 TTTTCAGAAAATCAGCCTCCATG 57.604 39.130 4.06 0.00 0.00 3.66
1373 1542 6.616237 ATTTTTCAGAAAATCAGCCTCCAT 57.384 33.333 9.19 0.00 40.54 3.41
1374 1543 6.041865 TGAATTTTTCAGAAAATCAGCCTCCA 59.958 34.615 9.19 0.00 42.97 3.86
1376 1545 9.643693 TTATGAATTTTTCAGAAAATCAGCCTC 57.356 29.630 9.19 1.94 42.97 4.70
1435 2020 5.298276 CACCTCCTTGCTTACTTGTACAAAA 59.702 40.000 10.03 1.12 0.00 2.44
1438 2023 3.644265 TCACCTCCTTGCTTACTTGTACA 59.356 43.478 0.00 0.00 0.00 2.90
1439 2024 4.246458 CTCACCTCCTTGCTTACTTGTAC 58.754 47.826 0.00 0.00 0.00 2.90
1440 2025 3.260884 CCTCACCTCCTTGCTTACTTGTA 59.739 47.826 0.00 0.00 0.00 2.41
1441 2026 2.039084 CCTCACCTCCTTGCTTACTTGT 59.961 50.000 0.00 0.00 0.00 3.16
1442 2027 2.039084 ACCTCACCTCCTTGCTTACTTG 59.961 50.000 0.00 0.00 0.00 3.16
1443 2028 2.039084 CACCTCACCTCCTTGCTTACTT 59.961 50.000 0.00 0.00 0.00 2.24
1447 2032 1.729586 TACACCTCACCTCCTTGCTT 58.270 50.000 0.00 0.00 0.00 3.91
1448 2033 1.556911 CATACACCTCACCTCCTTGCT 59.443 52.381 0.00 0.00 0.00 3.91
1449 2034 1.279271 ACATACACCTCACCTCCTTGC 59.721 52.381 0.00 0.00 0.00 4.01
1450 2035 2.303022 ACACATACACCTCACCTCCTTG 59.697 50.000 0.00 0.00 0.00 3.61
1451 2036 2.303022 CACACATACACCTCACCTCCTT 59.697 50.000 0.00 0.00 0.00 3.36
1452 2037 1.902508 CACACATACACCTCACCTCCT 59.097 52.381 0.00 0.00 0.00 3.69
1453 2038 1.623811 ACACACATACACCTCACCTCC 59.376 52.381 0.00 0.00 0.00 4.30
1454 2039 4.530710 TTACACACATACACCTCACCTC 57.469 45.455 0.00 0.00 0.00 3.85
1455 2040 4.967084 TTTACACACATACACCTCACCT 57.033 40.909 0.00 0.00 0.00 4.00
1459 2044 6.426937 ACTGAACATTTACACACATACACCTC 59.573 38.462 0.00 0.00 0.00 3.85
1460 2045 6.296026 ACTGAACATTTACACACATACACCT 58.704 36.000 0.00 0.00 0.00 4.00
1461 2046 6.554334 ACTGAACATTTACACACATACACC 57.446 37.500 0.00 0.00 0.00 4.16
1462 2047 8.931775 TCATACTGAACATTTACACACATACAC 58.068 33.333 0.00 0.00 0.00 2.90
1468 2053 9.472995 CGTATTTCATACTGAACATTTACACAC 57.527 33.333 0.00 0.00 35.89 3.82
1492 2077 7.012515 TGTGACCACTTTTACATATTTCAACGT 59.987 33.333 1.62 0.00 0.00 3.99
1495 2080 8.226819 TGTGTGACCACTTTTACATATTTCAA 57.773 30.769 1.62 0.00 42.34 2.69
1497 2082 8.349983 AGTTGTGTGACCACTTTTACATATTTC 58.650 33.333 1.62 0.00 42.34 2.17
1499 2084 7.817418 AGTTGTGTGACCACTTTTACATATT 57.183 32.000 1.62 0.00 42.34 1.28
1502 2087 6.151985 TCAAAGTTGTGTGACCACTTTTACAT 59.848 34.615 3.80 0.00 42.34 2.29
1504 2089 5.798434 GTCAAAGTTGTGTGACCACTTTTAC 59.202 40.000 3.80 3.60 42.34 2.01
1507 2092 4.079253 AGTCAAAGTTGTGTGACCACTTT 58.921 39.130 3.12 0.00 44.30 2.66
1508 2093 3.440173 CAGTCAAAGTTGTGTGACCACTT 59.560 43.478 3.12 0.00 44.30 3.16
1528 2161 4.637483 ATCCACAAACAGTCAAACACAG 57.363 40.909 0.00 0.00 0.00 3.66
1889 2591 4.227300 TGGTTTGGCCAGTAACTCATATCT 59.773 41.667 17.69 0.00 43.61 1.98
2045 2753 5.581126 TCCAATTTTGATTCCATTCTCGG 57.419 39.130 0.00 0.00 0.00 4.63
2122 2840 6.938030 ACATGTCCCGTTCATTTAAAGACTTA 59.062 34.615 0.00 0.00 0.00 2.24
2448 3661 8.517323 TTGGCATTAATTTTTGGGGGATATAT 57.483 30.769 0.00 0.00 0.00 0.86
2449 3662 7.570607 ACTTGGCATTAATTTTTGGGGGATATA 59.429 33.333 0.00 0.00 0.00 0.86
2458 3671 6.146021 GTGACCTCACTTGGCATTAATTTTTG 59.854 38.462 0.00 0.00 43.25 2.44
2707 4261 4.539726 AGAAACCTAAAACCTTTTCGGGT 58.460 39.130 6.15 4.79 42.05 5.28
2820 4374 2.616001 GCATCACCCCGTGGTTTTACTA 60.616 50.000 0.00 0.00 44.75 1.82
2845 4399 3.254903 GGAAGTCACCCACATTTACCAAC 59.745 47.826 0.00 0.00 0.00 3.77
2952 5213 5.084519 TCCCACTACACTACTCAATTGTCT 58.915 41.667 5.13 0.00 0.00 3.41
2955 5216 5.661056 TCTCCCACTACACTACTCAATTG 57.339 43.478 0.00 0.00 0.00 2.32
3091 5789 6.039717 TCAATGCTCTTATACTTCCCATTTGC 59.960 38.462 0.00 0.00 0.00 3.68
3120 5818 2.174639 CTGGGCATTTATGGTGACCCTA 59.825 50.000 0.00 0.00 44.56 3.53
3204 5902 0.895530 TCTCTTCGGTACTGCCCAAG 59.104 55.000 0.00 0.00 0.00 3.61
3445 6143 4.881019 AGTAACAGATGTCTCAGTGCTT 57.119 40.909 0.00 0.00 0.00 3.91
3447 6145 4.560128 TGAAGTAACAGATGTCTCAGTGC 58.440 43.478 0.00 0.00 0.00 4.40
3717 6425 4.865365 GGCATACTAGTGACACTCTGTTTC 59.135 45.833 12.39 5.48 0.00 2.78
4021 6729 5.818678 ACATGTACCTTTGGAGACACTTA 57.181 39.130 0.00 0.00 42.67 2.24
4023 6731 4.389374 CAACATGTACCTTTGGAGACACT 58.611 43.478 0.00 0.00 42.67 3.55
4092 6800 0.834261 GAGAGGGCCCAGAGATACCC 60.834 65.000 27.56 0.76 43.17 3.69
4117 6825 2.480037 TGCAAGTCTTAAGTGATGTGCG 59.520 45.455 1.63 0.00 33.86 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.