Multiple sequence alignment - TraesCS2A01G064100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G064100 chr2A 100.000 2692 0 0 1 2692 28783670 28786361 0.000000e+00 4972.0
1 TraesCS2A01G064100 chr2A 97.849 1023 22 0 1 1023 202779636 202778614 0.000000e+00 1768.0
2 TraesCS2A01G064100 chr2A 97.758 1026 20 2 1 1025 120717671 120718694 0.000000e+00 1764.0
3 TraesCS2A01G064100 chr6A 98.041 1021 20 0 1 1021 570452776 570453796 0.000000e+00 1775.0
4 TraesCS2A01G064100 chr5A 97.654 1023 23 1 1 1022 601643716 601644738 0.000000e+00 1755.0
5 TraesCS2A01G064100 chr5A 83.810 105 16 1 1926 2029 164075022 164075126 6.130000e-17 99.0
6 TraesCS2A01G064100 chr7B 97.168 1024 27 2 1 1022 317879884 317878861 0.000000e+00 1729.0
7 TraesCS2A01G064100 chr7A 97.966 934 18 1 91 1023 709807577 709808510 0.000000e+00 1618.0
8 TraesCS2A01G064100 chr7A 96.000 275 11 0 747 1021 67504576 67504302 5.290000e-122 448.0
9 TraesCS2A01G064100 chr7A 97.872 94 2 0 1 94 709793778 709793871 2.140000e-36 163.0
10 TraesCS2A01G064100 chr2D 91.950 559 31 5 1018 1567 26499916 26500469 0.000000e+00 771.0
11 TraesCS2A01G064100 chr2D 90.141 284 14 3 2410 2684 26501761 26502039 9.170000e-95 357.0
12 TraesCS2A01G064100 chr2D 84.395 314 35 7 2387 2691 640898491 640898183 2.030000e-76 296.0
13 TraesCS2A01G064100 chr2D 95.050 101 5 0 1725 1825 26501155 26501255 2.770000e-35 159.0
14 TraesCS2A01G064100 chr2D 89.474 76 8 0 1942 2017 62617135 62617210 2.210000e-16 97.1
15 TraesCS2A01G064100 chr2D 86.364 88 12 0 1942 2029 132697513 132697426 2.210000e-16 97.1
16 TraesCS2A01G064100 chrUn 85.032 314 33 7 2387 2691 17103149 17103457 9.360000e-80 307.0
17 TraesCS2A01G064100 chrUn 85.032 314 33 7 2387 2691 17125493 17125801 9.360000e-80 307.0
18 TraesCS2A01G064100 chrUn 85.032 314 33 7 2387 2691 358772619 358772927 9.360000e-80 307.0
19 TraesCS2A01G064100 chr6B 84.561 285 36 4 2410 2691 31732704 31732425 2.640000e-70 276.0
20 TraesCS2A01G064100 chr6D 91.398 93 8 0 1930 2022 327204731 327204823 7.820000e-26 128.0
21 TraesCS2A01G064100 chr7D 86.517 89 12 0 1930 2018 616501196 616501284 6.130000e-17 99.0
22 TraesCS2A01G064100 chr7D 86.364 88 12 0 1930 2017 104746845 104746932 2.210000e-16 97.1
23 TraesCS2A01G064100 chr3D 89.610 77 8 0 1942 2018 498891751 498891675 6.130000e-17 99.0
24 TraesCS2A01G064100 chr4D 86.364 88 12 0 1942 2029 385713780 385713693 2.210000e-16 97.1
25 TraesCS2A01G064100 chr5D 85.393 89 13 0 1930 2018 37862126 37862214 2.850000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G064100 chr2A 28783670 28786361 2691 False 4972 4972 100.000000 1 2692 1 chr2A.!!$F1 2691
1 TraesCS2A01G064100 chr2A 202778614 202779636 1022 True 1768 1768 97.849000 1 1023 1 chr2A.!!$R1 1022
2 TraesCS2A01G064100 chr2A 120717671 120718694 1023 False 1764 1764 97.758000 1 1025 1 chr2A.!!$F2 1024
3 TraesCS2A01G064100 chr6A 570452776 570453796 1020 False 1775 1775 98.041000 1 1021 1 chr6A.!!$F1 1020
4 TraesCS2A01G064100 chr5A 601643716 601644738 1022 False 1755 1755 97.654000 1 1022 1 chr5A.!!$F2 1021
5 TraesCS2A01G064100 chr7B 317878861 317879884 1023 True 1729 1729 97.168000 1 1022 1 chr7B.!!$R1 1021
6 TraesCS2A01G064100 chr7A 709807577 709808510 933 False 1618 1618 97.966000 91 1023 1 chr7A.!!$F2 932
7 TraesCS2A01G064100 chr2D 26499916 26502039 2123 False 429 771 92.380333 1018 2684 3 chr2D.!!$F2 1666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 378 0.523335 GCGGCTTGCCTTAACATTCG 60.523 55.0 10.12 0.0 37.76 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 2516 0.030235 GCCGAACCAACAAGAACACC 59.97 55.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 9.809096 CTTCTACTAATATTCAGTCTTTGCAGA 57.191 33.333 0.00 0.00 0.00 4.26
376 378 0.523335 GCGGCTTGCCTTAACATTCG 60.523 55.000 10.12 0.00 37.76 3.34
626 628 3.757184 CTCTTCTCACTCTCATGTCACG 58.243 50.000 0.00 0.00 0.00 4.35
974 976 6.060028 TCTTGACTGTAAAATGTTCTGTGC 57.940 37.500 0.00 0.00 0.00 4.57
1046 1048 7.232188 AGAGGATCATCATACATGAAAATGCT 58.768 34.615 10.44 9.47 40.69 3.79
1066 1068 2.756840 TGACCAGATCAAGAGTGCTG 57.243 50.000 0.00 0.00 33.02 4.41
1070 1072 1.554160 CCAGATCAAGAGTGCTGAGGT 59.446 52.381 0.00 0.00 0.00 3.85
1076 1078 1.821061 AAGAGTGCTGAGGTCACCGG 61.821 60.000 0.00 0.00 35.14 5.28
1091 1099 2.278857 CGGCGATGAGACCGGAAG 60.279 66.667 9.46 0.00 45.74 3.46
1137 1148 3.127533 GAAGCGAACGCCATGGCT 61.128 61.111 33.07 17.14 43.17 4.75
1192 1203 0.249120 CATCTTGCCCTCCGTGTACA 59.751 55.000 0.00 0.00 0.00 2.90
1194 1205 0.981183 TCTTGCCCTCCGTGTACATT 59.019 50.000 0.00 0.00 0.00 2.71
1454 1465 2.438951 TACTTTGGGTCGGCGTGGAC 62.439 60.000 6.85 0.00 36.18 4.02
1489 1500 0.878523 TTGTGTTCTTGGCGTCCTCG 60.879 55.000 0.00 0.00 40.37 4.63
1536 1547 1.087771 GGCTTGTTCGGACGTATGGG 61.088 60.000 0.00 0.00 0.00 4.00
1539 1550 0.533491 TTGTTCGGACGTATGGGAGG 59.467 55.000 0.00 0.00 0.00 4.30
1547 1558 2.633481 GGACGTATGGGAGGAAATAGCT 59.367 50.000 0.00 0.00 0.00 3.32
1548 1559 3.830755 GGACGTATGGGAGGAAATAGCTA 59.169 47.826 0.00 0.00 0.00 3.32
1579 1590 3.497879 CGGTGCCCGGAAGAAATC 58.502 61.111 0.73 0.00 44.15 2.17
1580 1591 1.078426 CGGTGCCCGGAAGAAATCT 60.078 57.895 0.73 0.00 44.15 2.40
1581 1592 1.090052 CGGTGCCCGGAAGAAATCTC 61.090 60.000 0.73 0.00 44.15 2.75
1582 1593 0.035439 GGTGCCCGGAAGAAATCTCA 60.035 55.000 0.73 0.00 0.00 3.27
1583 1594 1.373570 GTGCCCGGAAGAAATCTCAG 58.626 55.000 0.73 0.00 0.00 3.35
1584 1595 0.253044 TGCCCGGAAGAAATCTCAGG 59.747 55.000 0.73 0.00 0.00 3.86
1585 1596 0.541863 GCCCGGAAGAAATCTCAGGA 59.458 55.000 0.73 0.00 0.00 3.86
1586 1597 1.474143 GCCCGGAAGAAATCTCAGGAG 60.474 57.143 0.73 0.00 0.00 3.69
1587 1598 1.139853 CCCGGAAGAAATCTCAGGAGG 59.860 57.143 0.73 0.00 0.00 4.30
1588 1599 1.139853 CCGGAAGAAATCTCAGGAGGG 59.860 57.143 0.00 0.00 0.00 4.30
1589 1600 1.139853 CGGAAGAAATCTCAGGAGGGG 59.860 57.143 0.00 0.00 0.00 4.79
1590 1601 1.133945 GGAAGAAATCTCAGGAGGGGC 60.134 57.143 0.00 0.00 0.00 5.80
1591 1602 0.543749 AAGAAATCTCAGGAGGGGCG 59.456 55.000 0.00 0.00 0.00 6.13
1592 1603 1.147153 GAAATCTCAGGAGGGGCGG 59.853 63.158 0.00 0.00 0.00 6.13
1607 1618 3.494378 CGGTGAAGCTGCAGGATG 58.506 61.111 17.12 0.00 40.87 3.51
1609 1620 1.364626 CGGTGAAGCTGCAGGATGAC 61.365 60.000 17.12 0.00 39.69 3.06
1610 1621 0.321919 GGTGAAGCTGCAGGATGACA 60.322 55.000 17.12 0.00 39.69 3.58
1612 1623 1.400846 GTGAAGCTGCAGGATGACATG 59.599 52.381 17.12 0.00 39.69 3.21
1613 1624 1.279846 TGAAGCTGCAGGATGACATGA 59.720 47.619 17.12 0.00 39.69 3.07
1614 1625 2.290450 TGAAGCTGCAGGATGACATGAA 60.290 45.455 17.12 0.00 39.69 2.57
1615 1626 1.747709 AGCTGCAGGATGACATGAAC 58.252 50.000 17.12 0.00 39.69 3.18
1649 1660 0.309922 CTGGAATGCCGCATCATGAC 59.690 55.000 6.27 0.00 36.79 3.06
1653 1664 0.671796 AATGCCGCATCATGACCATG 59.328 50.000 6.27 3.70 40.09 3.66
1661 1672 2.094390 GCATCATGACCATGCAACAACT 60.094 45.455 13.62 0.00 45.19 3.16
1670 1681 7.283625 TGACCATGCAACAACTTATTTTAGT 57.716 32.000 0.00 0.00 0.00 2.24
1673 1684 5.925397 CCATGCAACAACTTATTTTAGTGCA 59.075 36.000 0.00 0.00 0.00 4.57
1674 1685 6.591062 CCATGCAACAACTTATTTTAGTGCAT 59.409 34.615 2.13 2.13 39.45 3.96
1676 1687 9.138062 CATGCAACAACTTATTTTAGTGCATAA 57.862 29.630 7.41 0.00 37.20 1.90
1677 1688 9.703892 ATGCAACAACTTATTTTAGTGCATAAA 57.296 25.926 6.04 0.00 37.48 1.40
1721 1781 8.942338 AAAAATCAGATCAATGTCCAATGATG 57.058 30.769 2.67 0.00 36.45 3.07
1798 2367 1.028330 CACATTCCTGGTCGCAGCAT 61.028 55.000 0.00 0.00 0.00 3.79
1825 2394 4.804139 CGCTTTACTGTTAGGTCGATCATT 59.196 41.667 0.00 0.00 0.00 2.57
1826 2395 5.975344 CGCTTTACTGTTAGGTCGATCATTA 59.025 40.000 0.00 0.00 0.00 1.90
1828 2397 6.074249 GCTTTACTGTTAGGTCGATCATTAGC 60.074 42.308 0.00 0.00 0.00 3.09
1829 2398 4.323553 ACTGTTAGGTCGATCATTAGCC 57.676 45.455 0.00 0.00 0.00 3.93
1830 2399 3.069729 ACTGTTAGGTCGATCATTAGCCC 59.930 47.826 0.00 0.00 0.00 5.19
1831 2400 3.305720 TGTTAGGTCGATCATTAGCCCT 58.694 45.455 0.00 0.00 0.00 5.19
1832 2401 4.476297 TGTTAGGTCGATCATTAGCCCTA 58.524 43.478 0.00 0.00 0.00 3.53
1833 2402 4.897076 TGTTAGGTCGATCATTAGCCCTAA 59.103 41.667 0.00 0.39 33.38 2.69
1834 2403 5.542635 TGTTAGGTCGATCATTAGCCCTAAT 59.457 40.000 9.35 0.00 37.03 1.73
1835 2404 6.722590 TGTTAGGTCGATCATTAGCCCTAATA 59.277 38.462 9.35 5.27 37.03 0.98
1836 2405 5.923733 AGGTCGATCATTAGCCCTAATAG 57.076 43.478 0.00 0.00 34.27 1.73
1837 2406 4.712337 AGGTCGATCATTAGCCCTAATAGG 59.288 45.833 0.00 0.00 34.27 2.57
1838 2407 4.466726 GGTCGATCATTAGCCCTAATAGGT 59.533 45.833 5.49 0.00 34.27 3.08
1839 2408 5.394333 GGTCGATCATTAGCCCTAATAGGTC 60.394 48.000 5.49 0.00 34.27 3.85
1840 2409 5.419471 GTCGATCATTAGCCCTAATAGGTCT 59.581 44.000 5.49 0.00 34.27 3.85
1841 2410 5.419155 TCGATCATTAGCCCTAATAGGTCTG 59.581 44.000 5.49 0.00 34.27 3.51
1842 2411 5.394663 CGATCATTAGCCCTAATAGGTCTGG 60.395 48.000 5.49 0.00 34.27 3.86
1843 2412 4.827789 TCATTAGCCCTAATAGGTCTGGT 58.172 43.478 5.49 0.00 34.27 4.00
1844 2413 5.224441 TCATTAGCCCTAATAGGTCTGGTT 58.776 41.667 5.49 0.00 34.27 3.67
1845 2414 5.307196 TCATTAGCCCTAATAGGTCTGGTTC 59.693 44.000 5.49 0.00 34.27 3.62
1846 2415 2.409570 AGCCCTAATAGGTCTGGTTCC 58.590 52.381 5.49 0.00 31.93 3.62
1847 2416 2.021936 AGCCCTAATAGGTCTGGTTCCT 60.022 50.000 5.49 0.00 38.91 3.36
1848 2417 2.369203 GCCCTAATAGGTCTGGTTCCTC 59.631 54.545 5.49 0.00 36.60 3.71
1849 2418 3.930035 CCCTAATAGGTCTGGTTCCTCT 58.070 50.000 5.49 0.00 36.60 3.69
1850 2419 3.643792 CCCTAATAGGTCTGGTTCCTCTG 59.356 52.174 5.49 0.00 36.60 3.35
1851 2420 3.643792 CCTAATAGGTCTGGTTCCTCTGG 59.356 52.174 0.00 0.00 36.60 3.86
1852 2421 3.491766 AATAGGTCTGGTTCCTCTGGA 57.508 47.619 0.00 0.00 36.60 3.86
1853 2422 2.233305 TAGGTCTGGTTCCTCTGGAC 57.767 55.000 0.00 0.00 36.60 4.02
1854 2423 0.545548 AGGTCTGGTTCCTCTGGACC 60.546 60.000 0.00 0.00 44.64 4.46
1855 2424 0.836400 GGTCTGGTTCCTCTGGACCA 60.836 60.000 0.00 0.00 43.98 4.02
1856 2425 0.610687 GTCTGGTTCCTCTGGACCAG 59.389 60.000 15.99 15.99 44.57 4.00
1857 2426 0.487325 TCTGGTTCCTCTGGACCAGA 59.513 55.000 22.97 22.97 46.85 3.86
1858 2427 1.079490 TCTGGTTCCTCTGGACCAGAT 59.921 52.381 24.51 0.00 45.61 2.90
1859 2428 1.209019 CTGGTTCCTCTGGACCAGATG 59.791 57.143 24.51 21.04 45.27 2.90
1860 2429 0.543749 GGTTCCTCTGGACCAGATGG 59.456 60.000 24.51 24.08 39.92 3.51
1861 2430 0.107459 GTTCCTCTGGACCAGATGGC 60.107 60.000 24.51 13.82 39.92 4.40
1862 2431 1.617018 TTCCTCTGGACCAGATGGCG 61.617 60.000 24.51 12.59 39.92 5.69
1863 2432 2.060383 CCTCTGGACCAGATGGCGA 61.060 63.158 24.51 1.49 39.92 5.54
1864 2433 1.142748 CTCTGGACCAGATGGCGAC 59.857 63.158 24.51 0.00 39.92 5.19
1865 2434 2.202797 CTGGACCAGATGGCGACG 60.203 66.667 17.22 0.00 39.32 5.12
1866 2435 3.723235 CTGGACCAGATGGCGACGG 62.723 68.421 17.22 0.00 39.32 4.79
1867 2436 4.530857 GGACCAGATGGCGACGGG 62.531 72.222 0.00 0.00 39.32 5.28
1868 2437 3.458163 GACCAGATGGCGACGGGA 61.458 66.667 0.00 0.00 39.32 5.14
1869 2438 3.432051 GACCAGATGGCGACGGGAG 62.432 68.421 0.00 0.00 39.32 4.30
1870 2439 3.147595 CCAGATGGCGACGGGAGA 61.148 66.667 0.00 0.00 0.00 3.71
1871 2440 2.721167 CCAGATGGCGACGGGAGAA 61.721 63.158 0.00 0.00 0.00 2.87
1872 2441 1.227089 CAGATGGCGACGGGAGAAG 60.227 63.158 0.00 0.00 0.00 2.85
1873 2442 2.107141 GATGGCGACGGGAGAAGG 59.893 66.667 0.00 0.00 0.00 3.46
1874 2443 4.162690 ATGGCGACGGGAGAAGGC 62.163 66.667 0.00 0.00 36.38 4.35
1878 2447 3.515286 CGACGGGAGAAGGCGCTA 61.515 66.667 7.64 0.00 0.00 4.26
1879 2448 2.846652 CGACGGGAGAAGGCGCTAT 61.847 63.158 7.64 0.00 0.00 2.97
1880 2449 1.007154 GACGGGAGAAGGCGCTATC 60.007 63.158 7.64 6.07 0.00 2.08
1881 2450 1.455959 ACGGGAGAAGGCGCTATCT 60.456 57.895 7.64 11.53 0.00 1.98
1882 2451 1.043673 ACGGGAGAAGGCGCTATCTT 61.044 55.000 7.64 1.33 0.00 2.40
1883 2452 0.598680 CGGGAGAAGGCGCTATCTTG 60.599 60.000 7.64 2.36 0.00 3.02
1884 2453 0.882484 GGGAGAAGGCGCTATCTTGC 60.882 60.000 7.64 0.43 0.00 4.01
1885 2454 0.179073 GGAGAAGGCGCTATCTTGCA 60.179 55.000 7.64 0.00 0.00 4.08
1886 2455 1.216122 GAGAAGGCGCTATCTTGCAG 58.784 55.000 7.64 0.00 0.00 4.41
1887 2456 0.539051 AGAAGGCGCTATCTTGCAGT 59.461 50.000 7.64 0.00 0.00 4.40
1888 2457 1.757118 AGAAGGCGCTATCTTGCAGTA 59.243 47.619 7.64 0.00 0.00 2.74
1889 2458 2.366916 AGAAGGCGCTATCTTGCAGTAT 59.633 45.455 7.64 0.00 0.00 2.12
1890 2459 2.447244 AGGCGCTATCTTGCAGTATC 57.553 50.000 7.64 0.00 0.00 2.24
1891 2460 1.001406 AGGCGCTATCTTGCAGTATCC 59.999 52.381 7.64 0.00 0.00 2.59
1892 2461 1.433534 GCGCTATCTTGCAGTATCCC 58.566 55.000 0.00 0.00 0.00 3.85
1893 2462 1.001406 GCGCTATCTTGCAGTATCCCT 59.999 52.381 0.00 0.00 0.00 4.20
1894 2463 2.681706 CGCTATCTTGCAGTATCCCTG 58.318 52.381 0.00 0.00 44.53 4.45
1895 2464 2.611473 CGCTATCTTGCAGTATCCCTGG 60.611 54.545 0.00 0.00 41.81 4.45
1896 2465 2.370189 GCTATCTTGCAGTATCCCTGGT 59.630 50.000 0.00 0.00 41.81 4.00
1897 2466 3.181450 GCTATCTTGCAGTATCCCTGGTT 60.181 47.826 0.00 0.00 41.81 3.67
1898 2467 4.687219 GCTATCTTGCAGTATCCCTGGTTT 60.687 45.833 0.00 0.00 41.81 3.27
1899 2468 3.806949 TCTTGCAGTATCCCTGGTTTT 57.193 42.857 0.00 0.00 41.81 2.43
1900 2469 3.420893 TCTTGCAGTATCCCTGGTTTTG 58.579 45.455 0.00 0.00 41.81 2.44
1901 2470 2.214376 TGCAGTATCCCTGGTTTTGG 57.786 50.000 0.00 0.00 41.81 3.28
1902 2471 0.817654 GCAGTATCCCTGGTTTTGGC 59.182 55.000 0.00 0.00 41.81 4.52
1903 2472 1.616994 GCAGTATCCCTGGTTTTGGCT 60.617 52.381 0.00 0.00 41.81 4.75
1904 2473 2.369394 CAGTATCCCTGGTTTTGGCTC 58.631 52.381 0.00 0.00 37.54 4.70
1905 2474 1.285078 AGTATCCCTGGTTTTGGCTCC 59.715 52.381 0.00 0.00 0.00 4.70
1906 2475 0.254747 TATCCCTGGTTTTGGCTCCG 59.745 55.000 0.00 0.00 0.00 4.63
1907 2476 1.789576 ATCCCTGGTTTTGGCTCCGT 61.790 55.000 0.00 0.00 0.00 4.69
1908 2477 2.268076 CCCTGGTTTTGGCTCCGTG 61.268 63.158 0.00 0.00 0.00 4.94
1909 2478 2.268076 CCTGGTTTTGGCTCCGTGG 61.268 63.158 0.00 0.00 0.00 4.94
1910 2479 1.228124 CTGGTTTTGGCTCCGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
1911 2480 0.609131 CTGGTTTTGGCTCCGTGGAT 60.609 55.000 0.00 0.00 0.00 3.41
1912 2481 0.893270 TGGTTTTGGCTCCGTGGATG 60.893 55.000 0.00 0.00 0.00 3.51
1913 2482 0.893727 GGTTTTGGCTCCGTGGATGT 60.894 55.000 0.00 0.00 0.00 3.06
1914 2483 0.958822 GTTTTGGCTCCGTGGATGTT 59.041 50.000 0.00 0.00 0.00 2.71
1915 2484 0.958091 TTTTGGCTCCGTGGATGTTG 59.042 50.000 0.00 0.00 0.00 3.33
1916 2485 0.893270 TTTGGCTCCGTGGATGTTGG 60.893 55.000 0.00 0.00 0.00 3.77
1917 2486 2.063015 TTGGCTCCGTGGATGTTGGT 62.063 55.000 0.00 0.00 0.00 3.67
1918 2487 1.195442 TGGCTCCGTGGATGTTGGTA 61.195 55.000 0.00 0.00 0.00 3.25
1919 2488 0.180406 GGCTCCGTGGATGTTGGTAT 59.820 55.000 0.00 0.00 0.00 2.73
1920 2489 1.408266 GGCTCCGTGGATGTTGGTATT 60.408 52.381 0.00 0.00 0.00 1.89
1921 2490 1.940613 GCTCCGTGGATGTTGGTATTC 59.059 52.381 0.00 0.00 0.00 1.75
1922 2491 2.420129 GCTCCGTGGATGTTGGTATTCT 60.420 50.000 0.00 0.00 0.00 2.40
1923 2492 3.873910 CTCCGTGGATGTTGGTATTCTT 58.126 45.455 0.00 0.00 0.00 2.52
1924 2493 3.605634 TCCGTGGATGTTGGTATTCTTG 58.394 45.455 0.00 0.00 0.00 3.02
1925 2494 3.008594 TCCGTGGATGTTGGTATTCTTGT 59.991 43.478 0.00 0.00 0.00 3.16
1926 2495 3.756434 CCGTGGATGTTGGTATTCTTGTT 59.244 43.478 0.00 0.00 0.00 2.83
1927 2496 4.379394 CCGTGGATGTTGGTATTCTTGTTG 60.379 45.833 0.00 0.00 0.00 3.33
1928 2497 4.379394 CGTGGATGTTGGTATTCTTGTTGG 60.379 45.833 0.00 0.00 0.00 3.77
1929 2498 4.522789 GTGGATGTTGGTATTCTTGTTGGT 59.477 41.667 0.00 0.00 0.00 3.67
1930 2499 5.010617 GTGGATGTTGGTATTCTTGTTGGTT 59.989 40.000 0.00 0.00 0.00 3.67
1931 2500 5.600484 TGGATGTTGGTATTCTTGTTGGTTT 59.400 36.000 0.00 0.00 0.00 3.27
1932 2501 5.925969 GGATGTTGGTATTCTTGTTGGTTTG 59.074 40.000 0.00 0.00 0.00 2.93
1933 2502 5.269505 TGTTGGTATTCTTGTTGGTTTGG 57.730 39.130 0.00 0.00 0.00 3.28
1934 2503 4.055360 GTTGGTATTCTTGTTGGTTTGGC 58.945 43.478 0.00 0.00 0.00 4.52
1935 2504 3.571590 TGGTATTCTTGTTGGTTTGGCT 58.428 40.909 0.00 0.00 0.00 4.75
1936 2505 3.572255 TGGTATTCTTGTTGGTTTGGCTC 59.428 43.478 0.00 0.00 0.00 4.70
1937 2506 3.826729 GGTATTCTTGTTGGTTTGGCTCT 59.173 43.478 0.00 0.00 0.00 4.09
1938 2507 4.321230 GGTATTCTTGTTGGTTTGGCTCTG 60.321 45.833 0.00 0.00 0.00 3.35
1939 2508 2.435372 TCTTGTTGGTTTGGCTCTGT 57.565 45.000 0.00 0.00 0.00 3.41
1940 2509 2.023673 TCTTGTTGGTTTGGCTCTGTG 58.976 47.619 0.00 0.00 0.00 3.66
1941 2510 1.067516 CTTGTTGGTTTGGCTCTGTGG 59.932 52.381 0.00 0.00 0.00 4.17
1942 2511 0.257328 TGTTGGTTTGGCTCTGTGGA 59.743 50.000 0.00 0.00 0.00 4.02
1943 2512 1.133513 TGTTGGTTTGGCTCTGTGGAT 60.134 47.619 0.00 0.00 0.00 3.41
1944 2513 1.270550 GTTGGTTTGGCTCTGTGGATG 59.729 52.381 0.00 0.00 0.00 3.51
1945 2514 0.478072 TGGTTTGGCTCTGTGGATGT 59.522 50.000 0.00 0.00 0.00 3.06
1946 2515 1.133513 TGGTTTGGCTCTGTGGATGTT 60.134 47.619 0.00 0.00 0.00 2.71
1947 2516 1.270550 GGTTTGGCTCTGTGGATGTTG 59.729 52.381 0.00 0.00 0.00 3.33
1948 2517 1.270550 GTTTGGCTCTGTGGATGTTGG 59.729 52.381 0.00 0.00 0.00 3.77
1949 2518 0.478072 TTGGCTCTGTGGATGTTGGT 59.522 50.000 0.00 0.00 0.00 3.67
1950 2519 0.250858 TGGCTCTGTGGATGTTGGTG 60.251 55.000 0.00 0.00 0.00 4.17
1951 2520 0.250901 GGCTCTGTGGATGTTGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
1952 2521 1.609208 GCTCTGTGGATGTTGGTGTT 58.391 50.000 0.00 0.00 0.00 3.32
1953 2522 1.537202 GCTCTGTGGATGTTGGTGTTC 59.463 52.381 0.00 0.00 0.00 3.18
1954 2523 2.811873 GCTCTGTGGATGTTGGTGTTCT 60.812 50.000 0.00 0.00 0.00 3.01
1955 2524 3.480470 CTCTGTGGATGTTGGTGTTCTT 58.520 45.455 0.00 0.00 0.00 2.52
1956 2525 3.213506 TCTGTGGATGTTGGTGTTCTTG 58.786 45.455 0.00 0.00 0.00 3.02
1957 2526 2.951642 CTGTGGATGTTGGTGTTCTTGT 59.048 45.455 0.00 0.00 0.00 3.16
1958 2527 3.360867 TGTGGATGTTGGTGTTCTTGTT 58.639 40.909 0.00 0.00 0.00 2.83
1959 2528 3.130164 TGTGGATGTTGGTGTTCTTGTTG 59.870 43.478 0.00 0.00 0.00 3.33
1960 2529 2.692557 TGGATGTTGGTGTTCTTGTTGG 59.307 45.455 0.00 0.00 0.00 3.77
1961 2530 2.693074 GGATGTTGGTGTTCTTGTTGGT 59.307 45.455 0.00 0.00 0.00 3.67
1962 2531 3.132111 GGATGTTGGTGTTCTTGTTGGTT 59.868 43.478 0.00 0.00 0.00 3.67
1963 2532 3.859411 TGTTGGTGTTCTTGTTGGTTC 57.141 42.857 0.00 0.00 0.00 3.62
1964 2533 2.162608 TGTTGGTGTTCTTGTTGGTTCG 59.837 45.455 0.00 0.00 0.00 3.95
1965 2534 1.384525 TGGTGTTCTTGTTGGTTCGG 58.615 50.000 0.00 0.00 0.00 4.30
1966 2535 0.030235 GGTGTTCTTGTTGGTTCGGC 59.970 55.000 0.00 0.00 0.00 5.54
1967 2536 0.736053 GTGTTCTTGTTGGTTCGGCA 59.264 50.000 0.00 0.00 0.00 5.69
1968 2537 1.336755 GTGTTCTTGTTGGTTCGGCAT 59.663 47.619 0.00 0.00 0.00 4.40
1969 2538 2.028130 TGTTCTTGTTGGTTCGGCATT 58.972 42.857 0.00 0.00 0.00 3.56
1970 2539 2.223688 TGTTCTTGTTGGTTCGGCATTG 60.224 45.455 0.00 0.00 0.00 2.82
1971 2540 0.313672 TCTTGTTGGTTCGGCATTGC 59.686 50.000 0.00 0.00 0.00 3.56
1972 2541 0.667184 CTTGTTGGTTCGGCATTGCC 60.667 55.000 18.10 18.10 46.75 4.52
1981 2550 2.343387 GGCATTGCCGCTTTTGGT 59.657 55.556 12.82 0.00 39.62 3.67
1982 2551 1.301637 GGCATTGCCGCTTTTGGTT 60.302 52.632 12.82 0.00 39.62 3.67
1983 2552 1.291184 GGCATTGCCGCTTTTGGTTC 61.291 55.000 12.82 0.00 39.62 3.62
1984 2553 1.616872 GCATTGCCGCTTTTGGTTCG 61.617 55.000 0.00 0.00 0.00 3.95
1985 2554 1.008361 CATTGCCGCTTTTGGTTCGG 61.008 55.000 0.00 0.00 45.46 4.30
1986 2555 2.153547 ATTGCCGCTTTTGGTTCGGG 62.154 55.000 2.02 0.00 43.11 5.14
1987 2556 3.292159 GCCGCTTTTGGTTCGGGT 61.292 61.111 2.02 0.00 43.11 5.28
1988 2557 2.852180 GCCGCTTTTGGTTCGGGTT 61.852 57.895 2.02 0.00 43.11 4.11
1989 2558 1.737201 CCGCTTTTGGTTCGGGTTT 59.263 52.632 0.00 0.00 39.52 3.27
1990 2559 0.596341 CCGCTTTTGGTTCGGGTTTG 60.596 55.000 0.00 0.00 39.52 2.93
1991 2560 0.596341 CGCTTTTGGTTCGGGTTTGG 60.596 55.000 0.00 0.00 0.00 3.28
1992 2561 0.462375 GCTTTTGGTTCGGGTTTGGT 59.538 50.000 0.00 0.00 0.00 3.67
1993 2562 1.682323 GCTTTTGGTTCGGGTTTGGTA 59.318 47.619 0.00 0.00 0.00 3.25
1994 2563 2.287970 GCTTTTGGTTCGGGTTTGGTAG 60.288 50.000 0.00 0.00 0.00 3.18
1995 2564 1.984066 TTTGGTTCGGGTTTGGTAGG 58.016 50.000 0.00 0.00 0.00 3.18
1996 2565 0.845337 TTGGTTCGGGTTTGGTAGGT 59.155 50.000 0.00 0.00 0.00 3.08
1997 2566 0.845337 TGGTTCGGGTTTGGTAGGTT 59.155 50.000 0.00 0.00 0.00 3.50
1998 2567 1.214923 TGGTTCGGGTTTGGTAGGTTT 59.785 47.619 0.00 0.00 0.00 3.27
1999 2568 2.441001 TGGTTCGGGTTTGGTAGGTTTA 59.559 45.455 0.00 0.00 0.00 2.01
2000 2569 3.076621 GGTTCGGGTTTGGTAGGTTTAG 58.923 50.000 0.00 0.00 0.00 1.85
2001 2570 2.477845 TCGGGTTTGGTAGGTTTAGC 57.522 50.000 0.00 0.00 0.00 3.09
2002 2571 1.980036 TCGGGTTTGGTAGGTTTAGCT 59.020 47.619 0.00 0.00 0.00 3.32
2003 2572 2.081462 CGGGTTTGGTAGGTTTAGCTG 58.919 52.381 0.00 0.00 0.00 4.24
2004 2573 2.551504 CGGGTTTGGTAGGTTTAGCTGT 60.552 50.000 0.00 0.00 0.00 4.40
2005 2574 2.817844 GGGTTTGGTAGGTTTAGCTGTG 59.182 50.000 0.00 0.00 0.00 3.66
2006 2575 3.497227 GGGTTTGGTAGGTTTAGCTGTGA 60.497 47.826 0.00 0.00 0.00 3.58
2007 2576 4.332828 GGTTTGGTAGGTTTAGCTGTGAT 58.667 43.478 0.00 0.00 0.00 3.06
2008 2577 4.156008 GGTTTGGTAGGTTTAGCTGTGATG 59.844 45.833 0.00 0.00 0.00 3.07
2009 2578 2.985896 TGGTAGGTTTAGCTGTGATGC 58.014 47.619 0.00 0.00 0.00 3.91
2010 2579 2.304470 TGGTAGGTTTAGCTGTGATGCA 59.696 45.455 0.00 0.00 34.99 3.96
2011 2580 3.054434 TGGTAGGTTTAGCTGTGATGCAT 60.054 43.478 0.00 0.00 34.99 3.96
2012 2581 3.561725 GGTAGGTTTAGCTGTGATGCATC 59.438 47.826 20.14 20.14 34.99 3.91
2013 2582 2.648059 AGGTTTAGCTGTGATGCATCC 58.352 47.619 23.67 15.02 34.99 3.51
2014 2583 2.240667 AGGTTTAGCTGTGATGCATCCT 59.759 45.455 23.67 15.16 34.99 3.24
2015 2584 2.615912 GGTTTAGCTGTGATGCATCCTC 59.384 50.000 23.67 16.41 34.99 3.71
2016 2585 3.539604 GTTTAGCTGTGATGCATCCTCT 58.460 45.455 23.67 15.93 34.99 3.69
2017 2586 2.904697 TAGCTGTGATGCATCCTCTG 57.095 50.000 23.67 18.99 34.99 3.35
2026 2595 4.391539 CATCCTCTGCACGAGTCG 57.608 61.111 11.85 11.85 38.11 4.18
2027 2596 1.803289 CATCCTCTGCACGAGTCGA 59.197 57.895 21.50 0.00 38.11 4.20
2028 2597 0.248417 CATCCTCTGCACGAGTCGAG 60.248 60.000 21.50 13.23 38.11 4.04
2029 2598 0.678366 ATCCTCTGCACGAGTCGAGT 60.678 55.000 21.50 0.00 38.11 4.18
2030 2599 0.889638 TCCTCTGCACGAGTCGAGTT 60.890 55.000 21.50 0.00 38.11 3.01
2031 2600 0.455295 CCTCTGCACGAGTCGAGTTC 60.455 60.000 21.50 5.41 38.11 3.01
2032 2601 0.519519 CTCTGCACGAGTCGAGTTCT 59.480 55.000 21.50 0.00 34.95 3.01
2033 2602 1.732809 CTCTGCACGAGTCGAGTTCTA 59.267 52.381 21.50 0.00 34.95 2.10
2034 2603 2.353269 CTCTGCACGAGTCGAGTTCTAT 59.647 50.000 21.50 0.00 34.95 1.98
2035 2604 2.352034 TCTGCACGAGTCGAGTTCTATC 59.648 50.000 21.50 0.00 0.00 2.08
2036 2605 2.081462 TGCACGAGTCGAGTTCTATCA 58.919 47.619 21.50 0.34 0.00 2.15
2037 2606 2.486592 TGCACGAGTCGAGTTCTATCAA 59.513 45.455 21.50 0.00 0.00 2.57
2038 2607 3.128764 TGCACGAGTCGAGTTCTATCAAT 59.871 43.478 21.50 0.00 0.00 2.57
2039 2608 4.334481 TGCACGAGTCGAGTTCTATCAATA 59.666 41.667 21.50 0.00 0.00 1.90
2040 2609 4.671516 GCACGAGTCGAGTTCTATCAATAC 59.328 45.833 21.50 0.00 0.00 1.89
2041 2610 5.729732 GCACGAGTCGAGTTCTATCAATACA 60.730 44.000 21.50 0.00 0.00 2.29
2042 2611 6.255950 CACGAGTCGAGTTCTATCAATACAA 58.744 40.000 21.50 0.00 0.00 2.41
2043 2612 6.745907 CACGAGTCGAGTTCTATCAATACAAA 59.254 38.462 21.50 0.00 0.00 2.83
2044 2613 7.432545 CACGAGTCGAGTTCTATCAATACAAAT 59.567 37.037 21.50 0.00 0.00 2.32
2045 2614 8.618677 ACGAGTCGAGTTCTATCAATACAAATA 58.381 33.333 21.50 0.00 0.00 1.40
2046 2615 9.613957 CGAGTCGAGTTCTATCAATACAAATAT 57.386 33.333 6.73 0.00 0.00 1.28
2069 2638 9.944376 ATATACAATGATACGTAAGATTTGCCT 57.056 29.630 0.00 0.00 43.62 4.75
2071 2640 9.944376 ATACAATGATACGTAAGATTTGCCTAT 57.056 29.630 0.00 0.00 43.62 2.57
2072 2641 8.677148 ACAATGATACGTAAGATTTGCCTATT 57.323 30.769 0.00 0.00 43.62 1.73
2073 2642 8.774586 ACAATGATACGTAAGATTTGCCTATTC 58.225 33.333 0.00 0.00 43.62 1.75
2074 2643 8.773645 CAATGATACGTAAGATTTGCCTATTCA 58.226 33.333 0.00 0.00 43.62 2.57
2075 2644 7.709269 TGATACGTAAGATTTGCCTATTCAC 57.291 36.000 0.00 0.00 43.62 3.18
2076 2645 6.419710 TGATACGTAAGATTTGCCTATTCACG 59.580 38.462 0.00 0.00 43.62 4.35
2077 2646 4.751060 ACGTAAGATTTGCCTATTCACGA 58.249 39.130 0.00 0.00 43.62 4.35
2078 2647 5.172934 ACGTAAGATTTGCCTATTCACGAA 58.827 37.500 0.00 0.00 43.62 3.85
2079 2648 5.640357 ACGTAAGATTTGCCTATTCACGAAA 59.360 36.000 0.00 0.00 43.62 3.46
2080 2649 6.183360 ACGTAAGATTTGCCTATTCACGAAAG 60.183 38.462 0.00 0.00 43.62 2.62
2081 2650 6.035650 CGTAAGATTTGCCTATTCACGAAAGA 59.964 38.462 0.00 0.00 43.02 2.52
2082 2651 6.817765 AAGATTTGCCTATTCACGAAAGAA 57.182 33.333 0.00 0.00 0.00 2.52
2083 2652 6.817765 AGATTTGCCTATTCACGAAAGAAA 57.182 33.333 0.00 0.00 0.00 2.52
2084 2653 7.214467 AGATTTGCCTATTCACGAAAGAAAA 57.786 32.000 0.00 0.00 0.00 2.29
2085 2654 7.308435 AGATTTGCCTATTCACGAAAGAAAAG 58.692 34.615 0.00 0.00 0.00 2.27
2086 2655 5.371115 TTGCCTATTCACGAAAGAAAAGG 57.629 39.130 0.00 0.00 0.00 3.11
2087 2656 3.756434 TGCCTATTCACGAAAGAAAAGGG 59.244 43.478 0.00 0.00 0.00 3.95
2088 2657 3.756963 GCCTATTCACGAAAGAAAAGGGT 59.243 43.478 0.00 0.00 0.00 4.34
2089 2658 4.379499 GCCTATTCACGAAAGAAAAGGGTG 60.379 45.833 0.00 0.00 0.00 4.61
2090 2659 5.001232 CCTATTCACGAAAGAAAAGGGTGA 58.999 41.667 0.00 0.00 35.97 4.02
2091 2660 5.648092 CCTATTCACGAAAGAAAAGGGTGAT 59.352 40.000 0.00 0.00 37.46 3.06
2092 2661 4.829064 TTCACGAAAGAAAAGGGTGATG 57.171 40.909 0.00 0.00 37.46 3.07
2093 2662 2.552315 TCACGAAAGAAAAGGGTGATGC 59.448 45.455 0.00 0.00 33.09 3.91
2094 2663 1.535462 ACGAAAGAAAAGGGTGATGCG 59.465 47.619 0.00 0.00 0.00 4.73
2095 2664 1.729149 CGAAAGAAAAGGGTGATGCGC 60.729 52.381 0.00 0.00 0.00 6.09
2096 2665 0.603065 AAAGAAAAGGGTGATGCGCC 59.397 50.000 4.18 0.00 0.00 6.53
2162 2731 3.230976 GGCCCCAACCATATAAAAGGAG 58.769 50.000 0.00 0.00 0.00 3.69
2175 2744 8.122952 CCATATAAAAGGAGTGAAAATCGTGTC 58.877 37.037 0.00 0.00 0.00 3.67
2180 2749 0.034896 AGTGAAAATCGTGTCCGCCT 59.965 50.000 0.00 0.00 0.00 5.52
2181 2750 0.165944 GTGAAAATCGTGTCCGCCTG 59.834 55.000 0.00 0.00 0.00 4.85
2182 2751 0.250124 TGAAAATCGTGTCCGCCTGT 60.250 50.000 0.00 0.00 0.00 4.00
2183 2752 1.001068 TGAAAATCGTGTCCGCCTGTA 59.999 47.619 0.00 0.00 0.00 2.74
2184 2753 2.277084 GAAAATCGTGTCCGCCTGTAT 58.723 47.619 0.00 0.00 0.00 2.29
2188 2757 1.434555 TCGTGTCCGCCTGTATTTTG 58.565 50.000 0.00 0.00 0.00 2.44
2190 2759 2.029200 TCGTGTCCGCCTGTATTTTGTA 60.029 45.455 0.00 0.00 0.00 2.41
2191 2760 2.737783 CGTGTCCGCCTGTATTTTGTAA 59.262 45.455 0.00 0.00 0.00 2.41
2192 2761 3.423907 CGTGTCCGCCTGTATTTTGTAAC 60.424 47.826 0.00 0.00 0.00 2.50
2193 2762 3.749609 GTGTCCGCCTGTATTTTGTAACT 59.250 43.478 0.00 0.00 0.00 2.24
2194 2763 4.931002 GTGTCCGCCTGTATTTTGTAACTA 59.069 41.667 0.00 0.00 0.00 2.24
2195 2764 5.409214 GTGTCCGCCTGTATTTTGTAACTAA 59.591 40.000 0.00 0.00 0.00 2.24
2197 2766 6.073112 TGTCCGCCTGTATTTTGTAACTAAAC 60.073 38.462 0.00 0.00 0.00 2.01
2198 2767 6.148315 GTCCGCCTGTATTTTGTAACTAAACT 59.852 38.462 0.00 0.00 0.00 2.66
2199 2768 7.331687 GTCCGCCTGTATTTTGTAACTAAACTA 59.668 37.037 0.00 0.00 0.00 2.24
2200 2769 7.877097 TCCGCCTGTATTTTGTAACTAAACTAA 59.123 33.333 0.00 0.00 0.00 2.24
2201 2770 7.959109 CCGCCTGTATTTTGTAACTAAACTAAC 59.041 37.037 0.00 0.00 0.00 2.34
2203 2772 9.821662 GCCTGTATTTTGTAACTAAACTAACTG 57.178 33.333 0.00 0.00 0.00 3.16
2206 2775 8.785946 TGTATTTTGTAACTAAACTAACTGGGC 58.214 33.333 0.00 0.00 0.00 5.36
2207 2776 7.826918 ATTTTGTAACTAAACTAACTGGGCA 57.173 32.000 0.00 0.00 0.00 5.36
2208 2777 6.870971 TTTGTAACTAAACTAACTGGGCAG 57.129 37.500 0.00 0.00 0.00 4.85
2209 2778 5.811796 TGTAACTAAACTAACTGGGCAGA 57.188 39.130 0.00 0.00 0.00 4.26
2210 2779 6.368779 TGTAACTAAACTAACTGGGCAGAT 57.631 37.500 0.00 0.00 0.00 2.90
2211 2780 7.484993 TGTAACTAAACTAACTGGGCAGATA 57.515 36.000 0.00 0.00 0.00 1.98
2212 2781 7.909518 TGTAACTAAACTAACTGGGCAGATAA 58.090 34.615 0.00 0.00 0.00 1.75
2213 2782 8.377034 TGTAACTAAACTAACTGGGCAGATAAA 58.623 33.333 0.00 0.00 0.00 1.40
2214 2783 9.392259 GTAACTAAACTAACTGGGCAGATAAAT 57.608 33.333 0.00 0.00 0.00 1.40
2215 2784 7.865706 ACTAAACTAACTGGGCAGATAAATG 57.134 36.000 0.00 0.00 0.00 2.32
2216 2785 7.402862 ACTAAACTAACTGGGCAGATAAATGT 58.597 34.615 0.00 0.00 0.00 2.71
2217 2786 7.888546 ACTAAACTAACTGGGCAGATAAATGTT 59.111 33.333 0.00 0.00 0.00 2.71
2218 2787 9.391006 CTAAACTAACTGGGCAGATAAATGTTA 57.609 33.333 0.00 0.00 0.00 2.41
2219 2788 7.625828 AACTAACTGGGCAGATAAATGTTAC 57.374 36.000 0.00 0.00 0.00 2.50
2220 2789 6.958767 ACTAACTGGGCAGATAAATGTTACT 58.041 36.000 0.00 0.00 0.00 2.24
2221 2790 7.048512 ACTAACTGGGCAGATAAATGTTACTC 58.951 38.462 0.00 0.00 0.00 2.59
2222 2791 4.781934 ACTGGGCAGATAAATGTTACTCC 58.218 43.478 0.00 0.00 0.00 3.85
2223 2792 4.475016 ACTGGGCAGATAAATGTTACTCCT 59.525 41.667 0.00 0.00 0.00 3.69
2236 2805 6.936968 ATGTTACTCCTACAGTTTTCTCCT 57.063 37.500 0.00 0.00 36.43 3.69
2237 2806 6.097915 TGTTACTCCTACAGTTTTCTCCTG 57.902 41.667 0.00 0.00 36.43 3.86
2238 2807 5.601313 TGTTACTCCTACAGTTTTCTCCTGT 59.399 40.000 0.00 0.00 44.90 4.00
2239 2808 6.099269 TGTTACTCCTACAGTTTTCTCCTGTT 59.901 38.462 0.00 0.00 42.83 3.16
2240 2809 4.962155 ACTCCTACAGTTTTCTCCTGTTG 58.038 43.478 0.00 0.00 42.83 3.33
2241 2810 4.654262 ACTCCTACAGTTTTCTCCTGTTGA 59.346 41.667 0.00 0.00 42.83 3.18
2242 2811 5.215252 TCCTACAGTTTTCTCCTGTTGAG 57.785 43.478 0.00 0.00 42.83 3.02
2243 2812 3.748568 CCTACAGTTTTCTCCTGTTGAGC 59.251 47.826 0.00 0.00 42.83 4.26
2244 2813 3.281727 ACAGTTTTCTCCTGTTGAGCA 57.718 42.857 0.00 0.00 40.14 4.26
2245 2814 2.945668 ACAGTTTTCTCCTGTTGAGCAC 59.054 45.455 0.00 0.00 40.14 4.40
2246 2815 2.945008 CAGTTTTCTCCTGTTGAGCACA 59.055 45.455 0.00 0.00 41.18 4.57
2254 2823 3.402186 TGTTGAGCACAGGTTCAGG 57.598 52.632 0.00 0.00 35.58 3.86
2291 2860 2.809446 GCCAATGGCGAACCTAATTTC 58.191 47.619 9.14 0.00 39.62 2.17
2295 2864 5.451242 GCCAATGGCGAACCTAATTTCATTA 60.451 40.000 9.14 0.00 39.62 1.90
2317 2886 3.802948 AACCGGAGTACAAGATAGCAG 57.197 47.619 9.46 0.00 0.00 4.24
2318 2887 2.032620 ACCGGAGTACAAGATAGCAGG 58.967 52.381 9.46 0.00 0.00 4.85
2322 2891 2.365941 GGAGTACAAGATAGCAGGGGTC 59.634 54.545 0.00 0.00 0.00 4.46
2324 2893 1.068741 GTACAAGATAGCAGGGGTCCG 59.931 57.143 0.00 0.00 0.00 4.79
2342 2911 4.333649 GGTCCGGTTTTAATAACTACAGCC 59.666 45.833 0.00 0.00 0.00 4.85
2350 2919 7.361799 GGTTTTAATAACTACAGCCCACTCAAG 60.362 40.741 0.00 0.00 0.00 3.02
2358 2927 1.674441 CAGCCCACTCAAGCATACATG 59.326 52.381 0.00 0.00 0.00 3.21
2379 2948 4.941657 TGCAAATAACAATGACAGCACAA 58.058 34.783 0.00 0.00 0.00 3.33
2387 2956 5.125100 ACAATGACAGCACAAATACCTTG 57.875 39.130 0.00 0.00 41.19 3.61
2388 2957 4.826733 ACAATGACAGCACAAATACCTTGA 59.173 37.500 0.00 0.00 38.50 3.02
2475 3282 7.195374 TGTTCATAGGAAATTAGCTACCTGT 57.805 36.000 10.21 1.85 34.13 4.00
2490 3297 1.488812 ACCTGTCACTACAAAGCACCA 59.511 47.619 0.00 0.00 34.49 4.17
2493 3300 2.802816 CTGTCACTACAAAGCACCACTC 59.197 50.000 0.00 0.00 34.49 3.51
2531 3338 5.858581 GCTCAAAATCCATACTTGACAACAC 59.141 40.000 0.00 0.00 0.00 3.32
2538 3345 4.081917 TCCATACTTGACAACACATCGCTA 60.082 41.667 0.00 0.00 0.00 4.26
2562 3378 5.957771 ATAAGGCTGTCTTTACCATGAGA 57.042 39.130 0.00 0.00 36.93 3.27
2635 3451 6.901300 ACTATTTATGTCTCCCTCCTTTTCC 58.099 40.000 0.00 0.00 0.00 3.13
2643 3459 2.820037 CTCCTTTTCCGCGCCTCC 60.820 66.667 0.00 0.00 0.00 4.30
2646 3462 2.668212 CTTTTCCGCGCCTCCACA 60.668 61.111 0.00 0.00 0.00 4.17
2657 3473 2.304056 CCTCCACATCCTGCCCTGT 61.304 63.158 0.00 0.00 0.00 4.00
2674 3490 2.602933 CCTGTCAATCGCACAAACACAG 60.603 50.000 0.00 0.00 0.00 3.66
2678 3494 2.046313 CAATCGCACAAACACAGAAGC 58.954 47.619 0.00 0.00 0.00 3.86
2684 3500 3.197265 GCACAAACACAGAAGCCAAAAT 58.803 40.909 0.00 0.00 0.00 1.82
2685 3501 3.001533 GCACAAACACAGAAGCCAAAATG 59.998 43.478 0.00 0.00 0.00 2.32
2686 3502 3.556775 CACAAACACAGAAGCCAAAATGG 59.443 43.478 0.00 0.00 41.55 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 6.671779 AGAGGAGAATTATCAGGTTGAGAAGT 59.328 38.462 1.97 0.00 30.56 3.01
412 414 1.895231 CTGGCAGCAGCAACAGTGA 60.895 57.895 0.00 0.00 44.61 3.41
626 628 2.216898 GCAGCTACAGGACATGATTCC 58.783 52.381 0.00 0.00 35.66 3.01
806 808 4.878968 ACAAAGAAAGAGAAGGGGGAAAA 58.121 39.130 0.00 0.00 0.00 2.29
822 824 7.556275 AGAACAACATGTCCTAAGAAACAAAGA 59.444 33.333 0.00 0.00 0.00 2.52
870 872 8.248904 AGCTGAATAAAGACATATGAGAGAGT 57.751 34.615 10.38 0.00 0.00 3.24
974 976 5.763444 CGAAGGTACCAATATATTCAGCG 57.237 43.478 15.94 0.00 0.00 5.18
1032 1034 6.604396 TGATCTGGTCAAGCATTTTCATGTAT 59.396 34.615 0.00 0.00 32.78 2.29
1046 1048 2.634453 TCAGCACTCTTGATCTGGTCAA 59.366 45.455 2.96 2.96 44.36 3.18
1066 1068 2.105128 CTCATCGCCGGTGACCTC 59.895 66.667 22.26 0.00 0.00 3.85
1070 1072 3.822192 CGGTCTCATCGCCGGTGA 61.822 66.667 22.04 22.04 43.85 4.02
1076 1078 2.167861 GTGCTTCCGGTCTCATCGC 61.168 63.158 0.00 0.00 0.00 4.58
1172 1183 0.462047 GTACACGGAGGGCAAGATGG 60.462 60.000 0.00 0.00 0.00 3.51
1221 1232 1.645710 AGGAAGTGTGGGTGTAGAGG 58.354 55.000 0.00 0.00 0.00 3.69
1457 1468 2.418628 AGAACACAATTTATGGCGACGG 59.581 45.455 0.00 0.00 0.00 4.79
1468 1479 1.880027 GAGGACGCCAAGAACACAATT 59.120 47.619 0.00 0.00 0.00 2.32
1473 1484 0.878523 CAACGAGGACGCCAAGAACA 60.879 55.000 0.00 0.00 43.96 3.18
1536 1547 2.294791 TGCTCGAGCTAGCTATTTCCTC 59.705 50.000 35.27 2.16 43.19 3.71
1539 1550 2.058057 GCTGCTCGAGCTAGCTATTTC 58.942 52.381 34.58 17.74 45.21 2.17
1567 1578 1.139853 CCTCCTGAGATTTCTTCCGGG 59.860 57.143 0.00 0.00 0.00 5.73
1568 1579 1.139853 CCCTCCTGAGATTTCTTCCGG 59.860 57.143 0.00 0.00 0.00 5.14
1569 1580 1.139853 CCCCTCCTGAGATTTCTTCCG 59.860 57.143 0.00 0.00 0.00 4.30
1570 1581 1.133945 GCCCCTCCTGAGATTTCTTCC 60.134 57.143 0.00 0.00 0.00 3.46
1571 1582 1.474143 CGCCCCTCCTGAGATTTCTTC 60.474 57.143 0.00 0.00 0.00 2.87
1572 1583 0.543749 CGCCCCTCCTGAGATTTCTT 59.456 55.000 0.00 0.00 0.00 2.52
1573 1584 1.341156 CCGCCCCTCCTGAGATTTCT 61.341 60.000 0.00 0.00 0.00 2.52
1574 1585 1.147153 CCGCCCCTCCTGAGATTTC 59.853 63.158 0.00 0.00 0.00 2.17
1575 1586 1.616628 ACCGCCCCTCCTGAGATTT 60.617 57.895 0.00 0.00 0.00 2.17
1576 1587 2.041265 ACCGCCCCTCCTGAGATT 59.959 61.111 0.00 0.00 0.00 2.40
1577 1588 2.765807 CACCGCCCCTCCTGAGAT 60.766 66.667 0.00 0.00 0.00 2.75
1578 1589 3.539593 TTCACCGCCCCTCCTGAGA 62.540 63.158 0.00 0.00 0.00 3.27
1579 1590 3.003173 TTCACCGCCCCTCCTGAG 61.003 66.667 0.00 0.00 0.00 3.35
1580 1591 3.003173 CTTCACCGCCCCTCCTGA 61.003 66.667 0.00 0.00 0.00 3.86
1581 1592 4.785453 GCTTCACCGCCCCTCCTG 62.785 72.222 0.00 0.00 0.00 3.86
1583 1594 4.785453 CAGCTTCACCGCCCCTCC 62.785 72.222 0.00 0.00 0.00 4.30
1588 1599 3.984193 ATCCTGCAGCTTCACCGCC 62.984 63.158 8.66 0.00 0.00 6.13
1589 1600 2.437359 ATCCTGCAGCTTCACCGC 60.437 61.111 8.66 0.00 0.00 5.68
1590 1601 1.078918 TCATCCTGCAGCTTCACCG 60.079 57.895 8.66 0.00 0.00 4.94
1591 1602 0.321919 TGTCATCCTGCAGCTTCACC 60.322 55.000 8.66 0.00 0.00 4.02
1592 1603 1.400846 CATGTCATCCTGCAGCTTCAC 59.599 52.381 8.66 2.65 0.00 3.18
1623 1634 0.881118 TGCGGCATTCCAGAAAGAAC 59.119 50.000 0.00 0.00 0.00 3.01
1630 1641 0.309922 GTCATGATGCGGCATTCCAG 59.690 55.000 17.78 7.96 0.00 3.86
1649 1660 5.925397 TGCACTAAAATAAGTTGTTGCATGG 59.075 36.000 0.00 0.00 0.00 3.66
1696 1731 7.985184 CCATCATTGGACATTGATCTGATTTTT 59.015 33.333 6.70 0.00 46.92 1.94
1698 1733 6.041637 CCCATCATTGGACATTGATCTGATTT 59.958 38.462 6.70 0.00 46.92 2.17
1699 1734 5.538813 CCCATCATTGGACATTGATCTGATT 59.461 40.000 6.70 0.00 46.92 2.57
1707 1767 0.249155 GCGCCCATCATTGGACATTG 60.249 55.000 0.00 0.00 46.92 2.82
1728 2297 2.949177 TCAAGGAGTTTAAGGCAGCA 57.051 45.000 0.00 0.00 0.00 4.41
1765 2334 2.945008 GGAATGTGAATCATCTCGCCAA 59.055 45.455 0.00 0.00 35.48 4.52
1766 2335 2.171237 AGGAATGTGAATCATCTCGCCA 59.829 45.455 0.00 0.00 35.48 5.69
1798 2367 2.409975 GACCTAACAGTAAAGCGTGCA 58.590 47.619 0.00 0.00 0.00 4.57
1828 2397 3.643792 CAGAGGAACCAGACCTATTAGGG 59.356 52.174 14.26 0.00 40.58 3.53
1829 2398 3.643792 CCAGAGGAACCAGACCTATTAGG 59.356 52.174 8.25 8.25 42.49 2.69
1830 2399 4.342665 GTCCAGAGGAACCAGACCTATTAG 59.657 50.000 0.00 0.00 37.93 1.73
1831 2400 4.287552 GTCCAGAGGAACCAGACCTATTA 58.712 47.826 0.00 0.00 37.93 0.98
1832 2401 3.108376 GTCCAGAGGAACCAGACCTATT 58.892 50.000 0.00 0.00 37.93 1.73
1833 2402 2.627217 GGTCCAGAGGAACCAGACCTAT 60.627 54.545 12.05 0.00 43.04 2.57
1834 2403 1.273098 GGTCCAGAGGAACCAGACCTA 60.273 57.143 12.05 0.00 43.04 3.08
1835 2404 0.545548 GGTCCAGAGGAACCAGACCT 60.546 60.000 12.05 0.00 43.04 3.85
1836 2405 0.836400 TGGTCCAGAGGAACCAGACC 60.836 60.000 0.00 12.28 45.91 3.85
1837 2406 0.610687 CTGGTCCAGAGGAACCAGAC 59.389 60.000 14.26 0.00 45.27 3.51
1838 2407 0.487325 TCTGGTCCAGAGGAACCAGA 59.513 55.000 18.15 22.34 46.85 3.86
1839 2408 1.209019 CATCTGGTCCAGAGGAACCAG 59.791 57.143 26.16 12.59 43.80 4.00
1840 2409 1.279496 CATCTGGTCCAGAGGAACCA 58.721 55.000 26.16 1.94 43.80 3.67
1841 2410 0.543749 CCATCTGGTCCAGAGGAACC 59.456 60.000 30.66 0.76 43.80 3.62
1842 2411 0.107459 GCCATCTGGTCCAGAGGAAC 60.107 60.000 30.66 19.63 43.80 3.62
1843 2412 1.617018 CGCCATCTGGTCCAGAGGAA 61.617 60.000 30.66 7.77 43.80 3.36
1844 2413 2.060383 CGCCATCTGGTCCAGAGGA 61.060 63.158 30.66 8.40 43.80 3.71
1845 2414 2.060383 TCGCCATCTGGTCCAGAGG 61.060 63.158 25.50 24.70 44.08 3.69
1846 2415 1.142748 GTCGCCATCTGGTCCAGAG 59.857 63.158 25.50 14.68 44.08 3.35
1847 2416 2.710902 CGTCGCCATCTGGTCCAGA 61.711 63.158 23.92 23.92 44.99 3.86
1848 2417 2.202797 CGTCGCCATCTGGTCCAG 60.203 66.667 13.21 13.21 37.57 3.86
1849 2418 3.770040 CCGTCGCCATCTGGTCCA 61.770 66.667 0.00 0.00 37.57 4.02
1850 2419 4.530857 CCCGTCGCCATCTGGTCC 62.531 72.222 0.00 0.00 37.57 4.46
1851 2420 3.432051 CTCCCGTCGCCATCTGGTC 62.432 68.421 0.00 0.00 37.57 4.02
1852 2421 3.461773 CTCCCGTCGCCATCTGGT 61.462 66.667 0.00 0.00 37.57 4.00
1853 2422 2.635229 CTTCTCCCGTCGCCATCTGG 62.635 65.000 0.00 0.00 38.53 3.86
1854 2423 1.227089 CTTCTCCCGTCGCCATCTG 60.227 63.158 0.00 0.00 0.00 2.90
1855 2424 2.427245 CCTTCTCCCGTCGCCATCT 61.427 63.158 0.00 0.00 0.00 2.90
1856 2425 2.107141 CCTTCTCCCGTCGCCATC 59.893 66.667 0.00 0.00 0.00 3.51
1857 2426 4.162690 GCCTTCTCCCGTCGCCAT 62.163 66.667 0.00 0.00 0.00 4.40
1861 2430 2.734756 GATAGCGCCTTCTCCCGTCG 62.735 65.000 2.29 0.00 0.00 5.12
1862 2431 1.007154 GATAGCGCCTTCTCCCGTC 60.007 63.158 2.29 0.00 0.00 4.79
1863 2432 1.043673 AAGATAGCGCCTTCTCCCGT 61.044 55.000 2.29 0.00 0.00 5.28
1864 2433 0.598680 CAAGATAGCGCCTTCTCCCG 60.599 60.000 2.29 0.00 0.00 5.14
1865 2434 0.882484 GCAAGATAGCGCCTTCTCCC 60.882 60.000 2.29 0.00 0.00 4.30
1866 2435 0.179073 TGCAAGATAGCGCCTTCTCC 60.179 55.000 2.29 2.56 37.31 3.71
1867 2436 1.216122 CTGCAAGATAGCGCCTTCTC 58.784 55.000 2.29 0.00 34.07 2.87
1868 2437 0.539051 ACTGCAAGATAGCGCCTTCT 59.461 50.000 2.29 3.33 37.43 2.85
1869 2438 2.225068 TACTGCAAGATAGCGCCTTC 57.775 50.000 2.29 0.34 37.43 3.46
1870 2439 2.548920 GGATACTGCAAGATAGCGCCTT 60.549 50.000 2.29 0.00 37.43 4.35
1871 2440 1.001406 GGATACTGCAAGATAGCGCCT 59.999 52.381 2.29 0.00 37.43 5.52
1872 2441 1.433534 GGATACTGCAAGATAGCGCC 58.566 55.000 2.29 0.00 37.43 6.53
1873 2442 1.001406 AGGGATACTGCAAGATAGCGC 59.999 52.381 0.00 0.00 37.43 5.92
1874 2443 2.611473 CCAGGGATACTGCAAGATAGCG 60.611 54.545 0.00 0.00 46.14 4.26
1875 2444 2.370189 ACCAGGGATACTGCAAGATAGC 59.630 50.000 0.00 0.00 46.14 2.97
1876 2445 4.696479 AACCAGGGATACTGCAAGATAG 57.304 45.455 0.00 0.00 46.14 2.08
1877 2446 5.192927 CAAAACCAGGGATACTGCAAGATA 58.807 41.667 0.00 0.00 46.14 1.98
1878 2447 4.019174 CAAAACCAGGGATACTGCAAGAT 58.981 43.478 0.00 0.00 46.14 2.40
1879 2448 3.420893 CAAAACCAGGGATACTGCAAGA 58.579 45.455 0.00 0.00 46.14 3.02
1880 2449 2.493278 CCAAAACCAGGGATACTGCAAG 59.507 50.000 0.00 0.00 46.14 4.01
1881 2450 2.524306 CCAAAACCAGGGATACTGCAA 58.476 47.619 0.00 0.00 46.14 4.08
1882 2451 1.890573 GCCAAAACCAGGGATACTGCA 60.891 52.381 0.00 0.00 46.14 4.41
1883 2452 0.817654 GCCAAAACCAGGGATACTGC 59.182 55.000 0.00 0.00 46.14 4.40
1885 2454 1.285078 GGAGCCAAAACCAGGGATACT 59.715 52.381 0.00 0.00 0.00 2.12
1886 2455 1.763968 GGAGCCAAAACCAGGGATAC 58.236 55.000 0.00 0.00 0.00 2.24
1887 2456 0.254747 CGGAGCCAAAACCAGGGATA 59.745 55.000 0.00 0.00 0.00 2.59
1888 2457 1.000896 CGGAGCCAAAACCAGGGAT 60.001 57.895 0.00 0.00 0.00 3.85
1889 2458 2.434331 CGGAGCCAAAACCAGGGA 59.566 61.111 0.00 0.00 0.00 4.20
1890 2459 2.115266 ACGGAGCCAAAACCAGGG 59.885 61.111 0.00 0.00 0.00 4.45
1891 2460 2.268076 CCACGGAGCCAAAACCAGG 61.268 63.158 0.00 0.00 0.00 4.45
1892 2461 0.609131 ATCCACGGAGCCAAAACCAG 60.609 55.000 0.00 0.00 0.00 4.00
1893 2462 0.893270 CATCCACGGAGCCAAAACCA 60.893 55.000 0.00 0.00 0.00 3.67
1894 2463 0.893727 ACATCCACGGAGCCAAAACC 60.894 55.000 0.00 0.00 0.00 3.27
1895 2464 0.958822 AACATCCACGGAGCCAAAAC 59.041 50.000 0.00 0.00 0.00 2.43
1896 2465 0.958091 CAACATCCACGGAGCCAAAA 59.042 50.000 0.00 0.00 0.00 2.44
1897 2466 0.893270 CCAACATCCACGGAGCCAAA 60.893 55.000 0.00 0.00 0.00 3.28
1898 2467 1.303236 CCAACATCCACGGAGCCAA 60.303 57.895 0.00 0.00 0.00 4.52
1899 2468 1.195442 TACCAACATCCACGGAGCCA 61.195 55.000 0.00 0.00 0.00 4.75
1900 2469 0.180406 ATACCAACATCCACGGAGCC 59.820 55.000 0.00 0.00 0.00 4.70
1901 2470 1.940613 GAATACCAACATCCACGGAGC 59.059 52.381 0.00 0.00 0.00 4.70
1902 2471 3.543680 AGAATACCAACATCCACGGAG 57.456 47.619 0.00 0.00 0.00 4.63
1903 2472 3.008594 ACAAGAATACCAACATCCACGGA 59.991 43.478 0.00 0.00 0.00 4.69
1904 2473 3.343617 ACAAGAATACCAACATCCACGG 58.656 45.455 0.00 0.00 0.00 4.94
1905 2474 4.379394 CCAACAAGAATACCAACATCCACG 60.379 45.833 0.00 0.00 0.00 4.94
1906 2475 4.522789 ACCAACAAGAATACCAACATCCAC 59.477 41.667 0.00 0.00 0.00 4.02
1907 2476 4.735369 ACCAACAAGAATACCAACATCCA 58.265 39.130 0.00 0.00 0.00 3.41
1908 2477 5.722021 AACCAACAAGAATACCAACATCC 57.278 39.130 0.00 0.00 0.00 3.51
1909 2478 5.925969 CCAAACCAACAAGAATACCAACATC 59.074 40.000 0.00 0.00 0.00 3.06
1910 2479 5.741673 GCCAAACCAACAAGAATACCAACAT 60.742 40.000 0.00 0.00 0.00 2.71
1911 2480 4.442192 GCCAAACCAACAAGAATACCAACA 60.442 41.667 0.00 0.00 0.00 3.33
1912 2481 4.055360 GCCAAACCAACAAGAATACCAAC 58.945 43.478 0.00 0.00 0.00 3.77
1913 2482 3.964031 AGCCAAACCAACAAGAATACCAA 59.036 39.130 0.00 0.00 0.00 3.67
1914 2483 3.571590 AGCCAAACCAACAAGAATACCA 58.428 40.909 0.00 0.00 0.00 3.25
1915 2484 3.826729 AGAGCCAAACCAACAAGAATACC 59.173 43.478 0.00 0.00 0.00 2.73
1916 2485 4.278419 ACAGAGCCAAACCAACAAGAATAC 59.722 41.667 0.00 0.00 0.00 1.89
1917 2486 4.278170 CACAGAGCCAAACCAACAAGAATA 59.722 41.667 0.00 0.00 0.00 1.75
1918 2487 3.068590 CACAGAGCCAAACCAACAAGAAT 59.931 43.478 0.00 0.00 0.00 2.40
1919 2488 2.426738 CACAGAGCCAAACCAACAAGAA 59.573 45.455 0.00 0.00 0.00 2.52
1920 2489 2.023673 CACAGAGCCAAACCAACAAGA 58.976 47.619 0.00 0.00 0.00 3.02
1921 2490 1.067516 CCACAGAGCCAAACCAACAAG 59.932 52.381 0.00 0.00 0.00 3.16
1922 2491 1.110442 CCACAGAGCCAAACCAACAA 58.890 50.000 0.00 0.00 0.00 2.83
1923 2492 0.257328 TCCACAGAGCCAAACCAACA 59.743 50.000 0.00 0.00 0.00 3.33
1924 2493 1.270550 CATCCACAGAGCCAAACCAAC 59.729 52.381 0.00 0.00 0.00 3.77
1925 2494 1.133513 ACATCCACAGAGCCAAACCAA 60.134 47.619 0.00 0.00 0.00 3.67
1926 2495 0.478072 ACATCCACAGAGCCAAACCA 59.522 50.000 0.00 0.00 0.00 3.67
1927 2496 1.270550 CAACATCCACAGAGCCAAACC 59.729 52.381 0.00 0.00 0.00 3.27
1928 2497 1.270550 CCAACATCCACAGAGCCAAAC 59.729 52.381 0.00 0.00 0.00 2.93
1929 2498 1.133513 ACCAACATCCACAGAGCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
1930 2499 0.478072 ACCAACATCCACAGAGCCAA 59.522 50.000 0.00 0.00 0.00 4.52
1931 2500 0.250858 CACCAACATCCACAGAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
1932 2501 0.250901 ACACCAACATCCACAGAGCC 60.251 55.000 0.00 0.00 0.00 4.70
1933 2502 1.537202 GAACACCAACATCCACAGAGC 59.463 52.381 0.00 0.00 0.00 4.09
1934 2503 3.131709 AGAACACCAACATCCACAGAG 57.868 47.619 0.00 0.00 0.00 3.35
1935 2504 3.213506 CAAGAACACCAACATCCACAGA 58.786 45.455 0.00 0.00 0.00 3.41
1936 2505 2.951642 ACAAGAACACCAACATCCACAG 59.048 45.455 0.00 0.00 0.00 3.66
1937 2506 3.011566 ACAAGAACACCAACATCCACA 57.988 42.857 0.00 0.00 0.00 4.17
1938 2507 3.490761 CCAACAAGAACACCAACATCCAC 60.491 47.826 0.00 0.00 0.00 4.02
1939 2508 2.692557 CCAACAAGAACACCAACATCCA 59.307 45.455 0.00 0.00 0.00 3.41
1940 2509 2.693074 ACCAACAAGAACACCAACATCC 59.307 45.455 0.00 0.00 0.00 3.51
1941 2510 4.359706 GAACCAACAAGAACACCAACATC 58.640 43.478 0.00 0.00 0.00 3.06
1942 2511 3.181491 CGAACCAACAAGAACACCAACAT 60.181 43.478 0.00 0.00 0.00 2.71
1943 2512 2.162608 CGAACCAACAAGAACACCAACA 59.837 45.455 0.00 0.00 0.00 3.33
1944 2513 2.478879 CCGAACCAACAAGAACACCAAC 60.479 50.000 0.00 0.00 0.00 3.77
1945 2514 1.746220 CCGAACCAACAAGAACACCAA 59.254 47.619 0.00 0.00 0.00 3.67
1946 2515 1.384525 CCGAACCAACAAGAACACCA 58.615 50.000 0.00 0.00 0.00 4.17
1947 2516 0.030235 GCCGAACCAACAAGAACACC 59.970 55.000 0.00 0.00 0.00 4.16
1948 2517 0.736053 TGCCGAACCAACAAGAACAC 59.264 50.000 0.00 0.00 0.00 3.32
1949 2518 1.686355 ATGCCGAACCAACAAGAACA 58.314 45.000 0.00 0.00 0.00 3.18
1950 2519 2.393764 CAATGCCGAACCAACAAGAAC 58.606 47.619 0.00 0.00 0.00 3.01
1951 2520 1.269517 GCAATGCCGAACCAACAAGAA 60.270 47.619 0.00 0.00 0.00 2.52
1952 2521 0.313672 GCAATGCCGAACCAACAAGA 59.686 50.000 0.00 0.00 0.00 3.02
1953 2522 0.667184 GGCAATGCCGAACCAACAAG 60.667 55.000 9.14 0.00 39.62 3.16
1954 2523 1.365633 GGCAATGCCGAACCAACAA 59.634 52.632 9.14 0.00 39.62 2.83
1955 2524 3.046870 GGCAATGCCGAACCAACA 58.953 55.556 9.14 0.00 39.62 3.33
1964 2533 1.291184 GAACCAAAAGCGGCAATGCC 61.291 55.000 15.52 15.52 46.75 4.40
1965 2534 1.616872 CGAACCAAAAGCGGCAATGC 61.617 55.000 1.45 0.00 0.00 3.56
1966 2535 1.008361 CCGAACCAAAAGCGGCAATG 61.008 55.000 1.45 0.00 38.46 2.82
1967 2536 1.288752 CCGAACCAAAAGCGGCAAT 59.711 52.632 1.45 0.00 38.46 3.56
1968 2537 2.725008 CCGAACCAAAAGCGGCAA 59.275 55.556 1.45 0.00 38.46 4.52
1969 2538 3.291383 CCCGAACCAAAAGCGGCA 61.291 61.111 1.45 0.00 43.52 5.69
1970 2539 2.358193 AAACCCGAACCAAAAGCGGC 62.358 55.000 0.00 0.00 43.52 6.53
1971 2540 0.596341 CAAACCCGAACCAAAAGCGG 60.596 55.000 0.00 0.00 44.42 5.52
1972 2541 0.596341 CCAAACCCGAACCAAAAGCG 60.596 55.000 0.00 0.00 0.00 4.68
1973 2542 0.462375 ACCAAACCCGAACCAAAAGC 59.538 50.000 0.00 0.00 0.00 3.51
1974 2543 2.295070 CCTACCAAACCCGAACCAAAAG 59.705 50.000 0.00 0.00 0.00 2.27
1975 2544 2.308690 CCTACCAAACCCGAACCAAAA 58.691 47.619 0.00 0.00 0.00 2.44
1976 2545 1.214923 ACCTACCAAACCCGAACCAAA 59.785 47.619 0.00 0.00 0.00 3.28
1977 2546 0.845337 ACCTACCAAACCCGAACCAA 59.155 50.000 0.00 0.00 0.00 3.67
1978 2547 0.845337 AACCTACCAAACCCGAACCA 59.155 50.000 0.00 0.00 0.00 3.67
1979 2548 1.985473 AAACCTACCAAACCCGAACC 58.015 50.000 0.00 0.00 0.00 3.62
1980 2549 2.485426 GCTAAACCTACCAAACCCGAAC 59.515 50.000 0.00 0.00 0.00 3.95
1981 2550 2.372837 AGCTAAACCTACCAAACCCGAA 59.627 45.455 0.00 0.00 0.00 4.30
1982 2551 1.980036 AGCTAAACCTACCAAACCCGA 59.020 47.619 0.00 0.00 0.00 5.14
1983 2552 2.081462 CAGCTAAACCTACCAAACCCG 58.919 52.381 0.00 0.00 0.00 5.28
1984 2553 2.817844 CACAGCTAAACCTACCAAACCC 59.182 50.000 0.00 0.00 0.00 4.11
1985 2554 3.746940 TCACAGCTAAACCTACCAAACC 58.253 45.455 0.00 0.00 0.00 3.27
1986 2555 4.379499 GCATCACAGCTAAACCTACCAAAC 60.379 45.833 0.00 0.00 0.00 2.93
1987 2556 3.756434 GCATCACAGCTAAACCTACCAAA 59.244 43.478 0.00 0.00 0.00 3.28
1988 2557 3.244735 TGCATCACAGCTAAACCTACCAA 60.245 43.478 0.00 0.00 34.99 3.67
1989 2558 2.304470 TGCATCACAGCTAAACCTACCA 59.696 45.455 0.00 0.00 34.99 3.25
1990 2559 2.985896 TGCATCACAGCTAAACCTACC 58.014 47.619 0.00 0.00 34.99 3.18
1991 2560 3.561725 GGATGCATCACAGCTAAACCTAC 59.438 47.826 27.25 1.72 34.20 3.18
1992 2561 3.455910 AGGATGCATCACAGCTAAACCTA 59.544 43.478 27.25 0.00 34.20 3.08
1993 2562 2.240667 AGGATGCATCACAGCTAAACCT 59.759 45.455 27.25 9.57 34.20 3.50
1994 2563 2.615912 GAGGATGCATCACAGCTAAACC 59.384 50.000 27.25 7.30 34.20 3.27
1995 2564 3.311871 CAGAGGATGCATCACAGCTAAAC 59.688 47.826 27.25 7.31 34.20 2.01
1996 2565 3.538591 CAGAGGATGCATCACAGCTAAA 58.461 45.455 27.25 0.00 34.20 1.85
1997 2566 3.189618 CAGAGGATGCATCACAGCTAA 57.810 47.619 27.25 0.00 34.20 3.09
1998 2567 2.904697 CAGAGGATGCATCACAGCTA 57.095 50.000 27.25 0.00 34.20 3.32
1999 2568 3.782632 CAGAGGATGCATCACAGCT 57.217 52.632 27.25 15.23 34.20 4.24
2014 2583 1.804601 TAGAACTCGACTCGTGCAGA 58.195 50.000 0.00 0.00 0.00 4.26
2015 2584 2.096013 TGATAGAACTCGACTCGTGCAG 59.904 50.000 0.00 0.00 0.00 4.41
2016 2585 2.081462 TGATAGAACTCGACTCGTGCA 58.919 47.619 0.00 0.00 0.00 4.57
2017 2586 2.826979 TGATAGAACTCGACTCGTGC 57.173 50.000 0.00 0.00 0.00 5.34
2018 2587 5.807344 TGTATTGATAGAACTCGACTCGTG 58.193 41.667 0.00 0.00 0.00 4.35
2019 2588 6.432607 TTGTATTGATAGAACTCGACTCGT 57.567 37.500 0.00 0.00 0.00 4.18
2020 2589 7.916128 ATTTGTATTGATAGAACTCGACTCG 57.084 36.000 0.00 0.00 0.00 4.18
2043 2612 9.944376 AGGCAAATCTTACGTATCATTGTATAT 57.056 29.630 0.00 0.00 0.00 0.86
2045 2614 9.944376 ATAGGCAAATCTTACGTATCATTGTAT 57.056 29.630 0.00 0.00 0.00 2.29
2046 2615 9.772973 AATAGGCAAATCTTACGTATCATTGTA 57.227 29.630 0.00 0.00 0.00 2.41
2047 2616 8.677148 AATAGGCAAATCTTACGTATCATTGT 57.323 30.769 0.00 0.00 0.00 2.71
2048 2617 8.773645 TGAATAGGCAAATCTTACGTATCATTG 58.226 33.333 0.00 1.63 0.00 2.82
2049 2618 8.774586 GTGAATAGGCAAATCTTACGTATCATT 58.225 33.333 0.00 0.00 0.00 2.57
2050 2619 7.116376 CGTGAATAGGCAAATCTTACGTATCAT 59.884 37.037 0.00 0.00 0.00 2.45
2051 2620 6.419710 CGTGAATAGGCAAATCTTACGTATCA 59.580 38.462 0.00 0.00 0.00 2.15
2052 2621 6.639686 TCGTGAATAGGCAAATCTTACGTATC 59.360 38.462 0.00 0.00 0.00 2.24
2053 2622 6.509656 TCGTGAATAGGCAAATCTTACGTAT 58.490 36.000 0.00 0.00 0.00 3.06
2054 2623 5.893687 TCGTGAATAGGCAAATCTTACGTA 58.106 37.500 0.00 0.00 0.00 3.57
2055 2624 4.751060 TCGTGAATAGGCAAATCTTACGT 58.249 39.130 0.00 0.00 0.00 3.57
2056 2625 5.712217 TTCGTGAATAGGCAAATCTTACG 57.288 39.130 0.00 0.00 0.00 3.18
2057 2626 7.303634 TCTTTCGTGAATAGGCAAATCTTAC 57.696 36.000 0.00 0.00 0.00 2.34
2058 2627 7.915293 TTCTTTCGTGAATAGGCAAATCTTA 57.085 32.000 0.00 0.00 0.00 2.10
2059 2628 6.817765 TTCTTTCGTGAATAGGCAAATCTT 57.182 33.333 0.00 0.00 0.00 2.40
2060 2629 6.817765 TTTCTTTCGTGAATAGGCAAATCT 57.182 33.333 0.00 0.00 0.00 2.40
2061 2630 6.528072 CCTTTTCTTTCGTGAATAGGCAAATC 59.472 38.462 10.07 0.00 37.97 2.17
2062 2631 6.389906 CCTTTTCTTTCGTGAATAGGCAAAT 58.610 36.000 10.07 0.00 37.97 2.32
2063 2632 5.278758 CCCTTTTCTTTCGTGAATAGGCAAA 60.279 40.000 14.21 0.00 41.03 3.68
2064 2633 4.217550 CCCTTTTCTTTCGTGAATAGGCAA 59.782 41.667 14.21 0.00 41.03 4.52
2065 2634 3.756434 CCCTTTTCTTTCGTGAATAGGCA 59.244 43.478 14.21 0.00 41.03 4.75
2066 2635 3.756963 ACCCTTTTCTTTCGTGAATAGGC 59.243 43.478 14.21 0.00 41.03 3.93
2067 2636 5.001232 TCACCCTTTTCTTTCGTGAATAGG 58.999 41.667 13.36 13.36 41.60 2.57
2068 2637 6.546395 CATCACCCTTTTCTTTCGTGAATAG 58.454 40.000 0.00 0.00 37.05 1.73
2069 2638 5.106317 GCATCACCCTTTTCTTTCGTGAATA 60.106 40.000 0.00 0.00 37.05 1.75
2070 2639 4.321230 GCATCACCCTTTTCTTTCGTGAAT 60.321 41.667 0.00 0.00 37.05 2.57
2071 2640 3.004315 GCATCACCCTTTTCTTTCGTGAA 59.996 43.478 0.00 0.00 37.05 3.18
2072 2641 2.552315 GCATCACCCTTTTCTTTCGTGA 59.448 45.455 0.00 0.00 37.81 4.35
2073 2642 2.665519 CGCATCACCCTTTTCTTTCGTG 60.666 50.000 0.00 0.00 0.00 4.35
2074 2643 1.535462 CGCATCACCCTTTTCTTTCGT 59.465 47.619 0.00 0.00 0.00 3.85
2075 2644 1.729149 GCGCATCACCCTTTTCTTTCG 60.729 52.381 0.30 0.00 0.00 3.46
2076 2645 1.402852 GGCGCATCACCCTTTTCTTTC 60.403 52.381 10.83 0.00 0.00 2.62
2077 2646 0.603065 GGCGCATCACCCTTTTCTTT 59.397 50.000 10.83 0.00 0.00 2.52
2078 2647 1.250840 GGGCGCATCACCCTTTTCTT 61.251 55.000 10.83 0.00 44.68 2.52
2079 2648 1.678970 GGGCGCATCACCCTTTTCT 60.679 57.895 10.83 0.00 44.68 2.52
2080 2649 2.885113 GGGCGCATCACCCTTTTC 59.115 61.111 10.83 0.00 44.68 2.29
2137 2706 2.577606 TTATATGGTTGGGGCCATCG 57.422 50.000 4.39 0.00 45.47 3.84
2143 2712 5.124036 TCACTCCTTTTATATGGTTGGGG 57.876 43.478 0.00 0.00 0.00 4.96
2144 2713 7.475137 TTTTCACTCCTTTTATATGGTTGGG 57.525 36.000 0.00 0.00 0.00 4.12
2147 2716 8.458843 CACGATTTTCACTCCTTTTATATGGTT 58.541 33.333 0.00 0.00 0.00 3.67
2148 2717 7.610305 ACACGATTTTCACTCCTTTTATATGGT 59.390 33.333 0.00 0.00 0.00 3.55
2162 2731 0.165944 CAGGCGGACACGATTTTCAC 59.834 55.000 0.00 0.00 44.60 3.18
2175 2744 6.490566 AGTTTAGTTACAAAATACAGGCGG 57.509 37.500 0.00 0.00 0.00 6.13
2180 2749 8.785946 GCCCAGTTAGTTTAGTTACAAAATACA 58.214 33.333 0.00 0.00 0.00 2.29
2181 2750 8.785946 TGCCCAGTTAGTTTAGTTACAAAATAC 58.214 33.333 0.00 0.00 0.00 1.89
2182 2751 8.921353 TGCCCAGTTAGTTTAGTTACAAAATA 57.079 30.769 0.00 0.00 0.00 1.40
2183 2752 7.722285 TCTGCCCAGTTAGTTTAGTTACAAAAT 59.278 33.333 0.00 0.00 0.00 1.82
2184 2753 7.055378 TCTGCCCAGTTAGTTTAGTTACAAAA 58.945 34.615 0.00 0.00 0.00 2.44
2188 2757 8.782339 TTTATCTGCCCAGTTAGTTTAGTTAC 57.218 34.615 0.00 0.00 0.00 2.50
2190 2759 7.888546 ACATTTATCTGCCCAGTTAGTTTAGTT 59.111 33.333 0.00 0.00 0.00 2.24
2191 2760 7.402862 ACATTTATCTGCCCAGTTAGTTTAGT 58.597 34.615 0.00 0.00 0.00 2.24
2192 2761 7.865706 ACATTTATCTGCCCAGTTAGTTTAG 57.134 36.000 0.00 0.00 0.00 1.85
2193 2762 9.169592 GTAACATTTATCTGCCCAGTTAGTTTA 57.830 33.333 0.00 0.00 0.00 2.01
2194 2763 7.888546 AGTAACATTTATCTGCCCAGTTAGTTT 59.111 33.333 0.00 0.00 0.00 2.66
2195 2764 7.402862 AGTAACATTTATCTGCCCAGTTAGTT 58.597 34.615 0.00 0.00 0.00 2.24
2197 2766 6.483640 GGAGTAACATTTATCTGCCCAGTTAG 59.516 42.308 0.00 0.00 0.00 2.34
2198 2767 6.157994 AGGAGTAACATTTATCTGCCCAGTTA 59.842 38.462 0.00 0.00 0.00 2.24
2199 2768 5.044846 AGGAGTAACATTTATCTGCCCAGTT 60.045 40.000 0.00 0.00 0.00 3.16
2200 2769 4.475016 AGGAGTAACATTTATCTGCCCAGT 59.525 41.667 0.00 0.00 0.00 4.00
2201 2770 5.041191 AGGAGTAACATTTATCTGCCCAG 57.959 43.478 0.00 0.00 0.00 4.45
2203 2772 5.925509 TGTAGGAGTAACATTTATCTGCCC 58.074 41.667 0.00 0.00 0.00 5.36
2205 2774 8.494016 AAACTGTAGGAGTAACATTTATCTGC 57.506 34.615 0.00 0.00 33.09 4.26
2209 2778 9.668497 GGAGAAAACTGTAGGAGTAACATTTAT 57.332 33.333 0.00 0.00 33.09 1.40
2210 2779 8.877195 AGGAGAAAACTGTAGGAGTAACATTTA 58.123 33.333 0.00 0.00 33.09 1.40
2211 2780 7.661847 CAGGAGAAAACTGTAGGAGTAACATTT 59.338 37.037 0.00 0.00 33.09 2.32
2212 2781 7.162082 CAGGAGAAAACTGTAGGAGTAACATT 58.838 38.462 0.00 0.00 33.09 2.71
2213 2782 6.270231 ACAGGAGAAAACTGTAGGAGTAACAT 59.730 38.462 0.00 0.00 46.62 2.71
2214 2783 5.601313 ACAGGAGAAAACTGTAGGAGTAACA 59.399 40.000 0.00 0.00 46.62 2.41
2215 2784 6.099159 ACAGGAGAAAACTGTAGGAGTAAC 57.901 41.667 0.00 0.00 46.62 2.50
2236 2805 0.546122 ACCTGAACCTGTGCTCAACA 59.454 50.000 0.00 0.00 37.22 3.33
2237 2806 1.680338 AACCTGAACCTGTGCTCAAC 58.320 50.000 0.00 0.00 0.00 3.18
2238 2807 2.435372 AAACCTGAACCTGTGCTCAA 57.565 45.000 0.00 0.00 0.00 3.02
2239 2808 2.435372 AAAACCTGAACCTGTGCTCA 57.565 45.000 0.00 0.00 0.00 4.26
2282 2851 7.884354 TGTACTCCGGTTTTAATGAAATTAGGT 59.116 33.333 0.00 0.00 40.40 3.08
2287 2856 7.989416 TCTTGTACTCCGGTTTTAATGAAAT 57.011 32.000 0.00 0.00 0.00 2.17
2291 2860 6.537301 TGCTATCTTGTACTCCGGTTTTAATG 59.463 38.462 0.00 0.00 0.00 1.90
2295 2864 4.504858 CTGCTATCTTGTACTCCGGTTTT 58.495 43.478 0.00 0.00 0.00 2.43
2317 2886 4.842574 TGTAGTTATTAAAACCGGACCCC 58.157 43.478 9.46 0.00 0.00 4.95
2318 2887 4.333649 GCTGTAGTTATTAAAACCGGACCC 59.666 45.833 9.46 0.00 0.00 4.46
2322 2891 4.095334 GTGGGCTGTAGTTATTAAAACCGG 59.905 45.833 0.00 0.00 0.00 5.28
2324 2893 5.941647 TGAGTGGGCTGTAGTTATTAAAACC 59.058 40.000 0.00 0.00 0.00 3.27
2358 2927 5.903764 TTTGTGCTGTCATTGTTATTTGC 57.096 34.783 0.00 0.00 0.00 3.68
2363 2932 6.488344 TCAAGGTATTTGTGCTGTCATTGTTA 59.512 34.615 0.00 0.00 38.01 2.41
2365 2934 4.826733 TCAAGGTATTTGTGCTGTCATTGT 59.173 37.500 0.00 0.00 38.01 2.71
2423 3230 4.523943 ACTTTTGCTGATCTAAACCATGCA 59.476 37.500 0.00 0.00 0.00 3.96
2426 3233 9.643693 CATTTAACTTTTGCTGATCTAAACCAT 57.356 29.630 0.00 0.00 0.00 3.55
2428 3235 9.476202 AACATTTAACTTTTGCTGATCTAAACC 57.524 29.630 0.00 0.00 0.00 3.27
2475 3282 1.071699 GGGAGTGGTGCTTTGTAGTGA 59.928 52.381 0.00 0.00 0.00 3.41
2490 3297 6.869206 TTTGAGCTATAGTTTACAGGGAGT 57.131 37.500 0.84 0.00 0.00 3.85
2493 3300 7.054124 TGGATTTTGAGCTATAGTTTACAGGG 58.946 38.462 0.84 0.00 0.00 4.45
2524 3331 5.119279 CAGCCTTATATAGCGATGTGTTGTC 59.881 44.000 0.00 0.00 0.00 3.18
2531 3338 6.531948 GGTAAAGACAGCCTTATATAGCGATG 59.468 42.308 0.00 0.00 34.00 3.84
2538 3345 7.291182 ACTCTCATGGTAAAGACAGCCTTATAT 59.709 37.037 0.00 0.00 34.00 0.86
2562 3378 6.430925 TGCTAAAGACATGTTAATGCTTGACT 59.569 34.615 0.00 0.00 37.29 3.41
2618 3434 0.253327 GCGGAAAAGGAGGGAGACAT 59.747 55.000 0.00 0.00 0.00 3.06
2619 3435 1.677552 GCGGAAAAGGAGGGAGACA 59.322 57.895 0.00 0.00 0.00 3.41
2643 3459 1.386533 GATTGACAGGGCAGGATGTG 58.613 55.000 0.00 0.00 39.31 3.21
2646 3462 1.153086 GCGATTGACAGGGCAGGAT 60.153 57.895 0.00 0.00 0.00 3.24
2657 3473 2.286950 GCTTCTGTGTTTGTGCGATTGA 60.287 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.