Multiple sequence alignment - TraesCS2A01G063400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G063400 chr2A 100.000 3505 0 0 1 3505 27961981 27965485 0.000000e+00 6473
1 TraesCS2A01G063400 chr2A 83.807 2180 218 62 1 2124 27955675 27957775 0.000000e+00 1945
2 TraesCS2A01G063400 chr2A 88.652 749 68 12 1389 2125 27952782 27953525 0.000000e+00 896
3 TraesCS2A01G063400 chr2A 80.585 958 114 45 258 1195 27951731 27952636 0.000000e+00 673
4 TraesCS2A01G063400 chr2A 84.286 210 28 5 2555 2760 27954019 27954227 2.130000e-47 200
5 TraesCS2A01G063400 chr2D 95.056 3277 113 22 1 3247 25346614 25349871 0.000000e+00 5108
6 TraesCS2A01G063400 chr2D 85.423 1372 128 50 777 2125 25338786 25340108 0.000000e+00 1360
7 TraesCS2A01G063400 chr2D 87.911 852 75 12 1280 2124 25343639 25344469 0.000000e+00 977
8 TraesCS2A01G063400 chr2D 83.257 651 80 17 2123 2760 25344549 25345183 3.930000e-159 571
9 TraesCS2A01G063400 chr2D 87.075 441 26 14 752 1192 25343227 25343636 1.470000e-128 470
10 TraesCS2A01G063400 chr2D 98.785 247 3 0 3259 3505 25349966 25350212 1.150000e-119 440
11 TraesCS2A01G063400 chr2D 79.853 407 44 21 258 652 25338297 25338677 2.680000e-66 263
12 TraesCS2A01G063400 chr2B 91.699 1807 100 17 1456 3247 41141399 41143170 0.000000e+00 2460
13 TraesCS2A01G063400 chr2B 85.638 1692 153 34 469 2124 41136505 41138142 0.000000e+00 1696
14 TraesCS2A01G063400 chr2B 91.567 1257 51 17 1 1247 41140198 41141409 0.000000e+00 1683
15 TraesCS2A01G063400 chr2B 88.712 753 62 16 1391 2125 41133037 41133784 0.000000e+00 898
16 TraesCS2A01G063400 chr2B 78.483 1055 132 56 258 1281 41131979 41132969 1.390000e-168 603
17 TraesCS2A01G063400 chr2B 83.871 651 76 16 2123 2760 41138222 41138856 8.380000e-166 593
18 TraesCS2A01G063400 chr2B 89.256 121 13 0 2555 2675 41134278 41134398 6.060000e-33 152
19 TraesCS2A01G063400 chr5B 84.513 1130 117 37 1021 2129 522408468 522409560 0.000000e+00 1064
20 TraesCS2A01G063400 chr5B 83.784 518 59 13 2162 2668 522860441 522859938 5.300000e-128 468
21 TraesCS2A01G063400 chr5A 84.513 1130 115 34 1021 2129 546770681 546769591 0.000000e+00 1062
22 TraesCS2A01G063400 chr5A 83.244 561 66 14 2123 2671 546769519 546768975 1.130000e-134 490
23 TraesCS2A01G063400 chr5D 84.336 1130 119 37 1021 2129 431781028 431782120 0.000000e+00 1053
24 TraesCS2A01G063400 chr5D 83.784 518 59 16 2162 2668 513309360 513309863 5.300000e-128 468
25 TraesCS2A01G063400 chr5D 83.237 519 60 15 2162 2668 431782228 431782731 5.340000e-123 451
26 TraesCS2A01G063400 chr5D 82.879 514 62 14 2166 2668 433683551 433683053 4.150000e-119 438
27 TraesCS2A01G063400 chr5D 82.323 198 15 10 442 628 433685142 433684954 1.680000e-33 154
28 TraesCS2A01G063400 chr5D 81.313 198 17 6 442 628 513307752 513307940 3.650000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G063400 chr2A 27961981 27965485 3504 False 6473.000000 6473 100.000000 1 3505 1 chr2A.!!$F1 3504
1 TraesCS2A01G063400 chr2A 27951731 27957775 6044 False 928.500000 1945 84.332500 1 2760 4 chr2A.!!$F2 2759
2 TraesCS2A01G063400 chr2D 25338297 25350212 11915 False 1312.714286 5108 88.194286 1 3505 7 chr2D.!!$F1 3504
3 TraesCS2A01G063400 chr2B 41131979 41143170 11191 False 1155.000000 2460 87.032286 1 3247 7 chr2B.!!$F1 3246
4 TraesCS2A01G063400 chr5B 522408468 522409560 1092 False 1064.000000 1064 84.513000 1021 2129 1 chr5B.!!$F1 1108
5 TraesCS2A01G063400 chr5B 522859938 522860441 503 True 468.000000 468 83.784000 2162 2668 1 chr5B.!!$R1 506
6 TraesCS2A01G063400 chr5A 546768975 546770681 1706 True 776.000000 1062 83.878500 1021 2671 2 chr5A.!!$R1 1650
7 TraesCS2A01G063400 chr5D 431781028 431782731 1703 False 752.000000 1053 83.786500 1021 2668 2 chr5D.!!$F1 1647
8 TraesCS2A01G063400 chr5D 513307752 513309863 2111 False 305.500000 468 82.548500 442 2668 2 chr5D.!!$F2 2226
9 TraesCS2A01G063400 chr5D 433683053 433685142 2089 True 296.000000 438 82.601000 442 2668 2 chr5D.!!$R1 2226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.033109 AATGCCCCCAAAGCCTAGAC 60.033 55.0 0.0 0.0 0.00 2.59 F
971 1099 0.100325 TGCAAGTTTGTCGCCAGTTG 59.900 50.0 0.0 0.0 0.00 3.16 F
1525 1688 0.104855 TGTCAACGACAGAGCTTGCT 59.895 50.0 0.0 0.0 37.67 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 1776 0.178990 GTGGCTTTCCAGAACCCAGT 60.179 55.0 0.47 0.00 44.48 4.00 R
2499 7159 0.034616 GGCAGGCTAGGCATCTAGTG 59.965 60.0 19.70 7.81 43.68 2.74 R
2521 7185 0.179018 GCACACCTTCCACTCCTTGT 60.179 55.0 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.625607 CTTGGAGTAAGGACCTTCTGTT 57.374 45.455 10.87 0.00 32.56 3.16
22 23 4.570930 CTTGGAGTAAGGACCTTCTGTTC 58.429 47.826 10.87 4.51 32.56 3.18
23 24 2.904434 TGGAGTAAGGACCTTCTGTTCC 59.096 50.000 10.87 13.40 0.00 3.62
24 25 2.904434 GGAGTAAGGACCTTCTGTTCCA 59.096 50.000 10.87 0.00 0.00 3.53
25 26 3.326880 GGAGTAAGGACCTTCTGTTCCAA 59.673 47.826 10.87 0.00 0.00 3.53
26 27 4.316645 GAGTAAGGACCTTCTGTTCCAAC 58.683 47.826 10.87 0.36 0.00 3.77
27 28 3.714798 AGTAAGGACCTTCTGTTCCAACA 59.285 43.478 10.87 0.00 37.37 3.33
28 29 2.640316 AGGACCTTCTGTTCCAACAC 57.360 50.000 0.00 0.00 34.70 3.32
29 30 2.127708 AGGACCTTCTGTTCCAACACT 58.872 47.619 0.00 0.00 34.70 3.55
30 31 2.104963 AGGACCTTCTGTTCCAACACTC 59.895 50.000 0.00 0.00 34.70 3.51
31 32 2.104963 GGACCTTCTGTTCCAACACTCT 59.895 50.000 0.00 0.00 34.70 3.24
32 33 3.134458 GACCTTCTGTTCCAACACTCTG 58.866 50.000 0.00 0.00 34.70 3.35
33 34 1.876156 CCTTCTGTTCCAACACTCTGC 59.124 52.381 0.00 0.00 34.70 4.26
34 35 2.486191 CCTTCTGTTCCAACACTCTGCT 60.486 50.000 0.00 0.00 34.70 4.24
35 36 3.244215 CCTTCTGTTCCAACACTCTGCTA 60.244 47.826 0.00 0.00 34.70 3.49
36 37 3.667497 TCTGTTCCAACACTCTGCTAG 57.333 47.619 0.00 0.00 34.70 3.42
37 38 2.072298 CTGTTCCAACACTCTGCTAGC 58.928 52.381 8.10 8.10 34.70 3.42
38 39 1.416030 TGTTCCAACACTCTGCTAGCA 59.584 47.619 18.22 18.22 33.17 3.49
39 40 2.072298 GTTCCAACACTCTGCTAGCAG 58.928 52.381 34.48 34.48 44.86 4.24
40 41 4.818831 TGTTCCAACACTCTGCTAGCAGA 61.819 47.826 38.04 38.04 41.18 4.26
49 50 3.516981 TCTGCTAGCAGAGTCATTCAC 57.483 47.619 37.64 0.00 46.80 3.18
50 51 2.159324 TCTGCTAGCAGAGTCATTCACG 60.159 50.000 37.64 13.84 46.80 4.35
51 52 0.926846 GCTAGCAGAGTCATTCACGC 59.073 55.000 10.63 0.00 0.00 5.34
52 53 1.470632 GCTAGCAGAGTCATTCACGCT 60.471 52.381 10.63 0.00 39.36 5.07
53 54 2.223595 GCTAGCAGAGTCATTCACGCTA 60.224 50.000 10.63 0.00 37.77 4.26
54 55 2.575694 AGCAGAGTCATTCACGCTAG 57.424 50.000 0.00 0.00 35.70 3.42
55 56 1.821753 AGCAGAGTCATTCACGCTAGT 59.178 47.619 0.00 0.00 35.70 2.57
56 57 2.232452 AGCAGAGTCATTCACGCTAGTT 59.768 45.455 0.00 0.00 35.70 2.24
57 58 2.996621 GCAGAGTCATTCACGCTAGTTT 59.003 45.455 0.00 0.00 32.49 2.66
58 59 4.082190 AGCAGAGTCATTCACGCTAGTTTA 60.082 41.667 0.00 0.00 35.70 2.01
59 60 4.806247 GCAGAGTCATTCACGCTAGTTTAT 59.194 41.667 0.00 0.00 32.49 1.40
60 61 5.977725 GCAGAGTCATTCACGCTAGTTTATA 59.022 40.000 0.00 0.00 32.49 0.98
61 62 6.074782 GCAGAGTCATTCACGCTAGTTTATAC 60.075 42.308 0.00 0.00 32.49 1.47
62 63 6.972901 CAGAGTCATTCACGCTAGTTTATACA 59.027 38.462 0.00 0.00 32.49 2.29
63 64 7.488150 CAGAGTCATTCACGCTAGTTTATACAA 59.512 37.037 0.00 0.00 32.49 2.41
64 65 8.033038 AGAGTCATTCACGCTAGTTTATACAAA 58.967 33.333 0.00 0.00 32.49 2.83
65 66 8.542497 AGTCATTCACGCTAGTTTATACAAAA 57.458 30.769 0.00 0.00 0.00 2.44
66 67 8.656849 AGTCATTCACGCTAGTTTATACAAAAG 58.343 33.333 0.00 0.00 0.00 2.27
67 68 8.440833 GTCATTCACGCTAGTTTATACAAAAGT 58.559 33.333 0.00 0.00 0.00 2.66
68 69 8.440059 TCATTCACGCTAGTTTATACAAAAGTG 58.560 33.333 0.00 0.00 0.00 3.16
69 70 6.160664 TCACGCTAGTTTATACAAAAGTGC 57.839 37.500 0.00 0.00 0.00 4.40
70 71 5.697178 TCACGCTAGTTTATACAAAAGTGCA 59.303 36.000 0.00 0.00 0.00 4.57
71 72 6.203145 TCACGCTAGTTTATACAAAAGTGCAA 59.797 34.615 0.00 0.00 0.00 4.08
72 73 6.853872 CACGCTAGTTTATACAAAAGTGCAAA 59.146 34.615 0.00 0.00 0.00 3.68
73 74 7.377397 CACGCTAGTTTATACAAAAGTGCAAAA 59.623 33.333 0.00 0.00 0.00 2.44
74 75 7.916450 ACGCTAGTTTATACAAAAGTGCAAAAA 59.084 29.630 0.00 0.00 0.00 1.94
75 76 8.417176 CGCTAGTTTATACAAAAGTGCAAAAAG 58.583 33.333 0.00 0.00 0.00 2.27
76 77 9.458374 GCTAGTTTATACAAAAGTGCAAAAAGA 57.542 29.630 0.00 0.00 0.00 2.52
81 82 9.809096 TTTATACAAAAGTGCAAAAAGATCACA 57.191 25.926 0.00 0.00 33.44 3.58
82 83 7.698836 ATACAAAAGTGCAAAAAGATCACAC 57.301 32.000 0.00 0.00 33.44 3.82
83 84 5.723295 ACAAAAGTGCAAAAAGATCACACT 58.277 33.333 0.00 0.00 43.14 3.55
84 85 5.577945 ACAAAAGTGCAAAAAGATCACACTG 59.422 36.000 0.00 0.00 40.55 3.66
85 86 3.996150 AGTGCAAAAAGATCACACTGG 57.004 42.857 0.00 0.00 39.97 4.00
86 87 3.290710 AGTGCAAAAAGATCACACTGGT 58.709 40.909 0.00 0.00 39.97 4.00
87 88 4.460263 AGTGCAAAAAGATCACACTGGTA 58.540 39.130 0.00 0.00 39.97 3.25
88 89 4.887071 AGTGCAAAAAGATCACACTGGTAA 59.113 37.500 0.00 0.00 39.97 2.85
89 90 5.009010 AGTGCAAAAAGATCACACTGGTAAG 59.991 40.000 0.00 0.00 39.97 2.34
90 91 4.278170 TGCAAAAAGATCACACTGGTAAGG 59.722 41.667 0.00 0.00 0.00 2.69
91 92 4.798574 CAAAAAGATCACACTGGTAAGGC 58.201 43.478 0.00 0.00 0.00 4.35
92 93 2.789409 AAGATCACACTGGTAAGGCC 57.211 50.000 0.00 0.00 37.90 5.19
93 94 1.656587 AGATCACACTGGTAAGGCCA 58.343 50.000 5.01 0.00 46.95 5.36
131 132 7.945033 AATGCAAACAAATAAAGTACACTGG 57.055 32.000 0.00 0.00 0.00 4.00
132 133 6.458232 TGCAAACAAATAAAGTACACTGGT 57.542 33.333 0.00 0.00 0.00 4.00
133 134 7.569639 TGCAAACAAATAAAGTACACTGGTA 57.430 32.000 0.00 0.00 0.00 3.25
134 135 7.997482 TGCAAACAAATAAAGTACACTGGTAA 58.003 30.769 0.00 0.00 0.00 2.85
135 136 8.132362 TGCAAACAAATAAAGTACACTGGTAAG 58.868 33.333 0.00 0.00 0.00 2.34
136 137 7.593644 GCAAACAAATAAAGTACACTGGTAAGG 59.406 37.037 0.00 0.00 0.00 2.69
137 138 6.812879 ACAAATAAAGTACACTGGTAAGGC 57.187 37.500 0.00 0.00 0.00 4.35
138 139 5.708697 ACAAATAAAGTACACTGGTAAGGCC 59.291 40.000 0.00 0.00 37.90 5.19
139 140 5.508280 AATAAAGTACACTGGTAAGGCCA 57.492 39.130 5.01 0.00 46.95 5.36
149 150 2.054799 TGGTAAGGCCATCACTATCCC 58.945 52.381 5.01 0.00 43.61 3.85
150 151 2.339769 GGTAAGGCCATCACTATCCCT 58.660 52.381 5.01 0.00 37.17 4.20
151 152 2.039084 GGTAAGGCCATCACTATCCCTG 59.961 54.545 5.01 0.00 37.17 4.45
152 153 1.143813 AAGGCCATCACTATCCCTGG 58.856 55.000 5.01 0.00 0.00 4.45
153 154 0.769776 AGGCCATCACTATCCCTGGG 60.770 60.000 6.33 6.33 0.00 4.45
154 155 1.062488 GGCCATCACTATCCCTGGGT 61.062 60.000 13.56 2.73 0.00 4.51
155 156 1.729586 GCCATCACTATCCCTGGGTA 58.270 55.000 13.56 3.84 0.00 3.69
156 157 2.054799 GCCATCACTATCCCTGGGTAA 58.945 52.381 13.56 0.88 0.00 2.85
157 158 2.644798 GCCATCACTATCCCTGGGTAAT 59.355 50.000 13.56 2.03 0.00 1.89
158 159 3.307762 GCCATCACTATCCCTGGGTAATC 60.308 52.174 13.56 0.00 0.00 1.75
159 160 3.909995 CCATCACTATCCCTGGGTAATCA 59.090 47.826 13.56 0.00 0.00 2.57
160 161 4.019860 CCATCACTATCCCTGGGTAATCAG 60.020 50.000 13.56 6.46 34.70 2.90
161 162 4.280789 TCACTATCCCTGGGTAATCAGT 57.719 45.455 13.56 7.07 33.14 3.41
162 163 4.223953 TCACTATCCCTGGGTAATCAGTC 58.776 47.826 13.56 0.00 33.14 3.51
163 164 4.078571 TCACTATCCCTGGGTAATCAGTCT 60.079 45.833 13.56 0.00 33.14 3.24
164 165 4.039730 CACTATCCCTGGGTAATCAGTCTG 59.960 50.000 13.56 0.00 33.14 3.51
165 166 2.642171 TCCCTGGGTAATCAGTCTGT 57.358 50.000 13.56 0.00 33.14 3.41
166 167 3.769189 TCCCTGGGTAATCAGTCTGTA 57.231 47.619 13.56 0.00 33.14 2.74
167 168 3.371965 TCCCTGGGTAATCAGTCTGTAC 58.628 50.000 13.56 0.00 33.14 2.90
168 169 3.104512 CCCTGGGTAATCAGTCTGTACA 58.895 50.000 3.97 0.00 33.14 2.90
169 170 3.711704 CCCTGGGTAATCAGTCTGTACAT 59.288 47.826 3.97 0.00 33.14 2.29
170 171 4.202264 CCCTGGGTAATCAGTCTGTACATC 60.202 50.000 3.97 0.00 33.14 3.06
171 172 4.651503 CCTGGGTAATCAGTCTGTACATCT 59.348 45.833 0.00 0.00 33.14 2.90
172 173 5.221342 CCTGGGTAATCAGTCTGTACATCTC 60.221 48.000 0.00 0.00 33.14 2.75
173 174 5.519808 TGGGTAATCAGTCTGTACATCTCT 58.480 41.667 0.00 0.00 0.00 3.10
174 175 5.594725 TGGGTAATCAGTCTGTACATCTCTC 59.405 44.000 0.00 0.00 0.00 3.20
175 176 5.830991 GGGTAATCAGTCTGTACATCTCTCT 59.169 44.000 0.00 0.00 0.00 3.10
176 177 6.016610 GGGTAATCAGTCTGTACATCTCTCTC 60.017 46.154 0.00 0.00 0.00 3.20
177 178 6.544197 GGTAATCAGTCTGTACATCTCTCTCA 59.456 42.308 0.00 0.00 0.00 3.27
178 179 6.449635 AATCAGTCTGTACATCTCTCTCAC 57.550 41.667 0.00 0.00 0.00 3.51
179 180 4.911390 TCAGTCTGTACATCTCTCTCACA 58.089 43.478 0.00 0.00 0.00 3.58
180 181 4.697828 TCAGTCTGTACATCTCTCTCACAC 59.302 45.833 0.00 0.00 0.00 3.82
181 182 4.457257 CAGTCTGTACATCTCTCTCACACA 59.543 45.833 0.00 0.00 0.00 3.72
182 183 4.457603 AGTCTGTACATCTCTCTCACACAC 59.542 45.833 0.00 0.00 0.00 3.82
183 184 3.437049 TCTGTACATCTCTCTCACACACG 59.563 47.826 0.00 0.00 0.00 4.49
184 185 2.095212 TGTACATCTCTCTCACACACGC 60.095 50.000 0.00 0.00 0.00 5.34
185 186 0.961753 ACATCTCTCTCACACACGCA 59.038 50.000 0.00 0.00 0.00 5.24
186 187 1.336332 ACATCTCTCTCACACACGCAC 60.336 52.381 0.00 0.00 0.00 5.34
187 188 0.109551 ATCTCTCTCACACACGCACG 60.110 55.000 0.00 0.00 0.00 5.34
188 189 2.354656 TCTCTCACACACGCACGC 60.355 61.111 0.00 0.00 0.00 5.34
189 190 3.756677 CTCTCACACACGCACGCG 61.757 66.667 10.36 10.36 46.03 6.01
197 198 3.772560 CACGCACGCGCACACATA 61.773 61.111 12.02 0.00 44.19 2.29
198 199 2.813474 ACGCACGCGCACACATAT 60.813 55.556 12.02 0.00 44.19 1.78
199 200 2.387445 ACGCACGCGCACACATATT 61.387 52.632 12.02 0.00 44.19 1.28
200 201 1.929242 CGCACGCGCACACATATTG 60.929 57.895 5.73 0.00 38.40 1.90
201 202 1.423450 GCACGCGCACACATATTGA 59.577 52.632 5.73 0.00 38.36 2.57
202 203 0.179202 GCACGCGCACACATATTGAA 60.179 50.000 5.73 0.00 38.36 2.69
203 204 1.801618 CACGCGCACACATATTGAAG 58.198 50.000 5.73 0.00 0.00 3.02
204 205 0.096976 ACGCGCACACATATTGAAGC 59.903 50.000 5.73 0.00 0.00 3.86
205 206 0.374758 CGCGCACACATATTGAAGCT 59.625 50.000 8.75 0.00 0.00 3.74
206 207 1.202065 CGCGCACACATATTGAAGCTT 60.202 47.619 8.75 0.00 0.00 3.74
207 208 2.030335 CGCGCACACATATTGAAGCTTA 59.970 45.455 8.75 0.00 0.00 3.09
208 209 3.303329 CGCGCACACATATTGAAGCTTAT 60.303 43.478 8.75 0.00 0.00 1.73
209 210 4.214437 GCGCACACATATTGAAGCTTATC 58.786 43.478 0.30 0.00 0.00 1.75
210 211 4.776743 CGCACACATATTGAAGCTTATCC 58.223 43.478 0.00 0.00 0.00 2.59
211 212 4.512944 CGCACACATATTGAAGCTTATCCT 59.487 41.667 0.00 0.00 0.00 3.24
212 213 5.696270 CGCACACATATTGAAGCTTATCCTA 59.304 40.000 0.00 0.00 0.00 2.94
213 214 6.202762 CGCACACATATTGAAGCTTATCCTAA 59.797 38.462 0.00 0.00 0.00 2.69
214 215 7.095060 CGCACACATATTGAAGCTTATCCTAAT 60.095 37.037 0.00 0.00 0.00 1.73
215 216 8.233190 GCACACATATTGAAGCTTATCCTAATC 58.767 37.037 0.00 0.00 0.00 1.75
216 217 9.276590 CACACATATTGAAGCTTATCCTAATCA 57.723 33.333 0.00 0.00 0.00 2.57
217 218 9.851686 ACACATATTGAAGCTTATCCTAATCAA 57.148 29.630 0.00 0.00 0.00 2.57
222 223 7.643569 TTGAAGCTTATCCTAATCAAATGCA 57.356 32.000 0.00 0.00 0.00 3.96
223 224 7.643569 TGAAGCTTATCCTAATCAAATGCAA 57.356 32.000 0.00 0.00 0.00 4.08
224 225 8.065473 TGAAGCTTATCCTAATCAAATGCAAA 57.935 30.769 0.00 0.00 0.00 3.68
225 226 8.698210 TGAAGCTTATCCTAATCAAATGCAAAT 58.302 29.630 0.00 0.00 0.00 2.32
226 227 9.538508 GAAGCTTATCCTAATCAAATGCAAATT 57.461 29.630 0.00 0.00 0.00 1.82
228 229 9.971922 AGCTTATCCTAATCAAATGCAAATTAC 57.028 29.630 0.00 0.00 0.00 1.89
229 230 9.748708 GCTTATCCTAATCAAATGCAAATTACA 57.251 29.630 0.00 0.00 0.00 2.41
238 239 9.991388 AATCAAATGCAAATTACATACAAATGC 57.009 25.926 0.00 0.00 36.50 3.56
239 240 7.972527 TCAAATGCAAATTACATACAAATGCC 58.027 30.769 0.00 0.00 36.50 4.40
240 241 6.923928 AATGCAAATTACATACAAATGCCC 57.076 33.333 0.00 0.00 36.50 5.36
241 242 4.764172 TGCAAATTACATACAAATGCCCC 58.236 39.130 0.00 0.00 36.50 5.80
242 243 4.126437 GCAAATTACATACAAATGCCCCC 58.874 43.478 0.00 0.00 36.50 5.40
243 244 4.383552 GCAAATTACATACAAATGCCCCCA 60.384 41.667 0.00 0.00 36.50 4.96
244 245 5.738909 CAAATTACATACAAATGCCCCCAA 58.261 37.500 0.00 0.00 36.50 4.12
245 246 6.176183 CAAATTACATACAAATGCCCCCAAA 58.824 36.000 0.00 0.00 36.50 3.28
246 247 5.612725 ATTACATACAAATGCCCCCAAAG 57.387 39.130 0.00 0.00 36.50 2.77
247 248 1.554617 ACATACAAATGCCCCCAAAGC 59.445 47.619 0.00 0.00 36.50 3.51
248 249 1.134431 CATACAAATGCCCCCAAAGCC 60.134 52.381 0.00 0.00 0.00 4.35
249 250 0.116143 TACAAATGCCCCCAAAGCCT 59.884 50.000 0.00 0.00 0.00 4.58
250 251 0.116143 ACAAATGCCCCCAAAGCCTA 59.884 50.000 0.00 0.00 0.00 3.93
251 252 0.826062 CAAATGCCCCCAAAGCCTAG 59.174 55.000 0.00 0.00 0.00 3.02
252 253 0.709992 AAATGCCCCCAAAGCCTAGA 59.290 50.000 0.00 0.00 0.00 2.43
253 254 0.033109 AATGCCCCCAAAGCCTAGAC 60.033 55.000 0.00 0.00 0.00 2.59
254 255 0.921256 ATGCCCCCAAAGCCTAGACT 60.921 55.000 0.00 0.00 0.00 3.24
255 256 0.252974 TGCCCCCAAAGCCTAGACTA 60.253 55.000 0.00 0.00 0.00 2.59
256 257 0.470341 GCCCCCAAAGCCTAGACTAG 59.530 60.000 2.18 2.18 0.00 2.57
257 258 1.880941 CCCCCAAAGCCTAGACTAGT 58.119 55.000 8.68 0.00 0.00 2.57
258 259 1.763545 CCCCCAAAGCCTAGACTAGTC 59.236 57.143 15.41 15.41 0.00 2.59
259 260 2.467880 CCCCAAAGCCTAGACTAGTCA 58.532 52.381 24.44 9.82 0.00 3.41
260 261 2.432510 CCCCAAAGCCTAGACTAGTCAG 59.567 54.545 24.44 17.69 0.00 3.51
261 262 2.432510 CCCAAAGCCTAGACTAGTCAGG 59.567 54.545 24.44 24.96 33.75 3.86
298 300 6.826893 AAACACATGAAACGGAGAATTTTG 57.173 33.333 0.00 0.00 0.00 2.44
307 309 4.830826 ACGGAGAATTTTGGTTTCAGAC 57.169 40.909 0.00 0.00 0.00 3.51
308 310 4.204012 ACGGAGAATTTTGGTTTCAGACA 58.796 39.130 0.00 0.00 0.00 3.41
309 311 4.827284 ACGGAGAATTTTGGTTTCAGACAT 59.173 37.500 0.00 0.00 0.00 3.06
310 312 5.048713 ACGGAGAATTTTGGTTTCAGACATC 60.049 40.000 0.00 0.00 0.00 3.06
311 313 5.048782 CGGAGAATTTTGGTTTCAGACATCA 60.049 40.000 0.00 0.00 0.00 3.07
312 314 6.514870 CGGAGAATTTTGGTTTCAGACATCAA 60.515 38.462 0.00 0.00 0.00 2.57
313 315 7.209475 GGAGAATTTTGGTTTCAGACATCAAA 58.791 34.615 0.00 0.00 0.00 2.69
323 325 7.922278 TGGTTTCAGACATCAAAATCAAAAGAG 59.078 33.333 0.00 0.00 0.00 2.85
352 354 7.975866 AATATTCATTGACGTTTCATGAAGC 57.024 32.000 11.93 11.93 35.04 3.86
369 371 2.181954 AGCCTCAAGAAGAGTTGCAG 57.818 50.000 0.00 0.00 43.12 4.41
374 376 3.745458 CCTCAAGAAGAGTTGCAGAGTTC 59.255 47.826 0.00 0.00 43.12 3.01
377 379 1.001406 AGAAGAGTTGCAGAGTTCCGG 59.999 52.381 0.00 0.00 0.00 5.14
384 386 2.457080 GCAGAGTTCCGGTTACTGC 58.543 57.895 21.43 21.43 44.88 4.40
395 397 1.385528 GGTTACTGCCGTAATTGGGG 58.614 55.000 3.94 0.00 37.87 4.96
396 398 1.340308 GGTTACTGCCGTAATTGGGGT 60.340 52.381 3.94 0.00 37.87 4.95
397 399 2.093021 GGTTACTGCCGTAATTGGGGTA 60.093 50.000 3.94 0.00 37.87 3.69
398 400 2.938451 GTTACTGCCGTAATTGGGGTAC 59.062 50.000 3.94 0.00 37.87 3.34
399 401 1.282382 ACTGCCGTAATTGGGGTACT 58.718 50.000 0.00 0.00 0.00 2.73
400 402 1.208776 ACTGCCGTAATTGGGGTACTC 59.791 52.381 0.00 0.00 0.00 2.59
401 403 0.542805 TGCCGTAATTGGGGTACTCC 59.457 55.000 4.21 4.21 0.00 3.85
403 405 2.041701 GCCGTAATTGGGGTACTCCTA 58.958 52.381 14.34 5.70 35.33 2.94
404 406 2.224137 GCCGTAATTGGGGTACTCCTAC 60.224 54.545 14.34 6.47 35.33 3.18
406 408 4.473444 CCGTAATTGGGGTACTCCTACTA 58.527 47.826 14.34 0.00 35.33 1.82
408 410 5.047519 CCGTAATTGGGGTACTCCTACTATG 60.048 48.000 14.34 5.10 35.33 2.23
409 411 5.537674 CGTAATTGGGGTACTCCTACTATGT 59.462 44.000 14.34 0.00 35.33 2.29
410 412 6.716628 CGTAATTGGGGTACTCCTACTATGTA 59.283 42.308 14.34 0.00 35.33 2.29
414 416 9.854303 AATTGGGGTACTCCTACTATGTATTAT 57.146 33.333 14.34 0.00 35.33 1.28
415 417 9.854303 ATTGGGGTACTCCTACTATGTATTATT 57.146 33.333 14.34 0.00 35.33 1.40
453 455 1.546029 GGGAGGCCAAAGATGAAACAC 59.454 52.381 5.01 0.00 0.00 3.32
454 456 2.519013 GGAGGCCAAAGATGAAACACT 58.481 47.619 5.01 0.00 0.00 3.55
459 466 5.842907 AGGCCAAAGATGAAACACTAAAAC 58.157 37.500 5.01 0.00 0.00 2.43
465 474 9.023967 CCAAAGATGAAACACTAAAACTCAAAG 57.976 33.333 0.00 0.00 0.00 2.77
493 508 5.483685 TCTAGAAGGCAAGTGTTGTACAT 57.516 39.130 0.00 0.00 0.00 2.29
516 531 2.422276 AAGAATGTTTTGACTGCCGC 57.578 45.000 0.00 0.00 0.00 6.53
533 548 2.348591 GCCGCACGTGAATATTCTAAGC 60.349 50.000 22.23 12.94 0.00 3.09
534 549 2.863740 CCGCACGTGAATATTCTAAGCA 59.136 45.455 22.23 0.00 0.00 3.91
535 550 3.494626 CCGCACGTGAATATTCTAAGCAT 59.505 43.478 22.23 0.00 0.00 3.79
536 551 4.448891 CGCACGTGAATATTCTAAGCATG 58.551 43.478 22.23 4.66 0.00 4.06
537 552 4.209080 CGCACGTGAATATTCTAAGCATGA 59.791 41.667 22.23 0.00 0.00 3.07
538 553 5.276820 CGCACGTGAATATTCTAAGCATGAA 60.277 40.000 22.23 0.00 0.00 2.57
539 554 6.132056 GCACGTGAATATTCTAAGCATGAAG 58.868 40.000 22.23 0.00 0.00 3.02
552 567 5.581126 AAGCATGAAGTGTGAACTGAAAA 57.419 34.783 0.00 0.00 0.00 2.29
556 571 6.015688 AGCATGAAGTGTGAACTGAAAATGAT 60.016 34.615 0.00 0.00 0.00 2.45
632 703 1.284657 CTAATCGTGACAGCTGCCTG 58.715 55.000 15.27 1.14 44.80 4.85
633 704 0.894835 TAATCGTGACAGCTGCCTGA 59.105 50.000 15.27 7.33 41.77 3.86
636 707 0.179059 TCGTGACAGCTGCCTGAAAA 60.179 50.000 15.27 0.00 41.77 2.29
637 708 0.236711 CGTGACAGCTGCCTGAAAAG 59.763 55.000 15.27 0.00 41.77 2.27
646 717 1.959848 GCCTGAAAAGGACTGGCAC 59.040 57.895 0.00 0.00 46.54 5.01
652 723 0.178961 AAAAGGACTGGCACCCCTTC 60.179 55.000 13.99 0.00 39.21 3.46
653 724 1.360393 AAAGGACTGGCACCCCTTCA 61.360 55.000 13.99 0.00 39.21 3.02
654 725 1.142688 AAGGACTGGCACCCCTTCAT 61.143 55.000 9.23 0.00 35.52 2.57
655 726 1.379044 GGACTGGCACCCCTTCATG 60.379 63.158 0.00 0.00 0.00 3.07
656 727 2.036256 ACTGGCACCCCTTCATGC 59.964 61.111 0.00 0.00 41.29 4.06
657 728 2.357836 CTGGCACCCCTTCATGCT 59.642 61.111 0.00 0.00 41.74 3.79
658 729 1.207488 ACTGGCACCCCTTCATGCTA 61.207 55.000 0.00 0.00 41.74 3.49
659 730 0.749454 CTGGCACCCCTTCATGCTAC 60.749 60.000 0.00 0.00 41.74 3.58
661 732 0.464554 GGCACCCCTTCATGCTACTC 60.465 60.000 0.00 0.00 41.74 2.59
663 734 1.745141 GCACCCCTTCATGCTACTCAG 60.745 57.143 0.00 0.00 38.84 3.35
676 747 4.596801 GCTACTCAGCTTGTCTTCATTG 57.403 45.455 0.00 0.00 44.93 2.82
677 748 4.248859 GCTACTCAGCTTGTCTTCATTGA 58.751 43.478 0.00 0.00 44.93 2.57
678 749 4.329528 GCTACTCAGCTTGTCTTCATTGAG 59.670 45.833 0.00 0.00 44.93 3.02
679 750 4.613925 ACTCAGCTTGTCTTCATTGAGA 57.386 40.909 6.33 0.00 36.46 3.27
680 751 5.163281 ACTCAGCTTGTCTTCATTGAGAT 57.837 39.130 6.33 0.00 36.46 2.75
681 752 6.291648 ACTCAGCTTGTCTTCATTGAGATA 57.708 37.500 6.33 0.00 36.46 1.98
682 753 6.105333 ACTCAGCTTGTCTTCATTGAGATAC 58.895 40.000 6.33 0.00 36.46 2.24
683 754 6.070881 ACTCAGCTTGTCTTCATTGAGATACT 60.071 38.462 6.33 0.00 36.46 2.12
684 755 7.123397 ACTCAGCTTGTCTTCATTGAGATACTA 59.877 37.037 6.33 0.00 36.46 1.82
685 756 7.840931 TCAGCTTGTCTTCATTGAGATACTAA 58.159 34.615 0.00 0.00 0.00 2.24
686 757 8.481314 TCAGCTTGTCTTCATTGAGATACTAAT 58.519 33.333 0.00 0.00 0.00 1.73
687 758 8.763356 CAGCTTGTCTTCATTGAGATACTAATC 58.237 37.037 0.00 0.00 0.00 1.75
688 759 7.930865 AGCTTGTCTTCATTGAGATACTAATCC 59.069 37.037 0.00 0.00 31.98 3.01
689 760 7.712639 GCTTGTCTTCATTGAGATACTAATCCA 59.287 37.037 0.00 0.00 31.98 3.41
690 761 9.258826 CTTGTCTTCATTGAGATACTAATCCAG 57.741 37.037 0.00 0.00 31.98 3.86
691 762 7.730084 TGTCTTCATTGAGATACTAATCCAGG 58.270 38.462 0.00 0.00 31.98 4.45
692 763 7.565029 TGTCTTCATTGAGATACTAATCCAGGA 59.435 37.037 0.00 0.00 31.98 3.86
693 764 8.592809 GTCTTCATTGAGATACTAATCCAGGAT 58.407 37.037 0.00 0.00 31.98 3.24
694 765 9.163894 TCTTCATTGAGATACTAATCCAGGATT 57.836 33.333 19.08 19.08 36.20 3.01
706 777 8.029642 ACTAATCCAGGATTAAATTAATCGCG 57.970 34.615 20.53 0.00 44.24 5.87
707 778 7.876068 ACTAATCCAGGATTAAATTAATCGCGA 59.124 33.333 20.53 13.09 44.24 5.87
726 797 3.605692 GCGACAGCTTTCAAACAGAGAAG 60.606 47.826 0.02 0.00 41.01 2.85
752 854 9.563898 GGAACTAAAACGAATTATTAAAGGGTG 57.436 33.333 0.00 0.00 0.00 4.61
760 862 4.601406 ATTATTAAAGGGTGGCCTGTGA 57.399 40.909 3.32 0.00 0.00 3.58
761 863 2.990740 ATTAAAGGGTGGCCTGTGAA 57.009 45.000 3.32 0.00 0.00 3.18
768 870 0.618458 GGTGGCCTGTGAACCTCATA 59.382 55.000 3.32 0.00 0.00 2.15
795 910 1.142748 CCAGGTAGCTCAAGCCTCG 59.857 63.158 0.00 0.00 43.38 4.63
798 917 1.683917 CAGGTAGCTCAAGCCTCGTAT 59.316 52.381 0.00 0.00 43.38 3.06
802 921 5.183331 CAGGTAGCTCAAGCCTCGTATATAA 59.817 44.000 0.00 0.00 43.38 0.98
831 950 1.337447 ACATGGTGTGTGCCGTAGTAC 60.337 52.381 0.00 0.00 40.28 2.73
843 962 1.624487 CGTAGTACACTGCATCGCAA 58.376 50.000 0.38 0.00 38.41 4.85
844 963 1.320555 CGTAGTACACTGCATCGCAAC 59.679 52.381 0.38 0.00 38.41 4.17
865 984 3.766051 ACATCTGTAGTGCACATCTCTCA 59.234 43.478 21.04 7.43 36.29 3.27
882 1010 4.590647 TCTCTCAGTGATTGTCTTCACCTT 59.409 41.667 0.00 0.00 45.80 3.50
888 1016 4.284490 AGTGATTGTCTTCACCTTAGCAGA 59.716 41.667 1.19 0.00 45.80 4.26
908 1036 4.404715 CAGATTCATCCCAAGAAGCCATTT 59.595 41.667 0.00 0.00 32.09 2.32
925 1053 4.002982 CCATTTACTAGCTCACTGCACAA 58.997 43.478 0.00 0.00 45.94 3.33
926 1054 4.093998 CCATTTACTAGCTCACTGCACAAG 59.906 45.833 0.00 0.00 45.94 3.16
927 1055 2.370281 TACTAGCTCACTGCACAAGC 57.630 50.000 0.00 2.69 45.94 4.01
943 1071 3.376859 CACAAGCAGTACAACAAGGACAA 59.623 43.478 0.00 0.00 0.00 3.18
944 1072 3.627577 ACAAGCAGTACAACAAGGACAAG 59.372 43.478 0.00 0.00 0.00 3.16
963 1091 3.990318 AGTAGCCTTTGCAAGTTTGTC 57.010 42.857 0.00 0.00 41.13 3.18
964 1092 2.290641 AGTAGCCTTTGCAAGTTTGTCG 59.709 45.455 0.00 0.00 41.13 4.35
965 1093 0.249031 AGCCTTTGCAAGTTTGTCGC 60.249 50.000 0.00 0.00 41.13 5.19
966 1094 1.215014 GCCTTTGCAAGTTTGTCGCC 61.215 55.000 0.00 0.00 37.47 5.54
968 1096 1.480205 CTTTGCAAGTTTGTCGCCAG 58.520 50.000 0.00 0.00 0.00 4.85
970 1098 0.814457 TTGCAAGTTTGTCGCCAGTT 59.186 45.000 0.00 0.00 0.00 3.16
971 1099 0.100325 TGCAAGTTTGTCGCCAGTTG 59.900 50.000 0.00 0.00 0.00 3.16
972 1100 1.208642 GCAAGTTTGTCGCCAGTTGC 61.209 55.000 0.00 0.00 34.10 4.17
973 1101 0.100325 CAAGTTTGTCGCCAGTTGCA 59.900 50.000 0.00 0.00 41.33 4.08
974 1102 1.032014 AAGTTTGTCGCCAGTTGCAT 58.968 45.000 0.00 0.00 41.33 3.96
975 1103 1.032014 AGTTTGTCGCCAGTTGCATT 58.968 45.000 0.00 0.00 41.33 3.56
976 1104 2.226330 AGTTTGTCGCCAGTTGCATTA 58.774 42.857 0.00 0.00 41.33 1.90
977 1105 2.226437 AGTTTGTCGCCAGTTGCATTAG 59.774 45.455 0.00 0.00 41.33 1.73
978 1106 1.890876 TTGTCGCCAGTTGCATTAGT 58.109 45.000 0.00 0.00 41.33 2.24
979 1107 2.753055 TGTCGCCAGTTGCATTAGTA 57.247 45.000 0.00 0.00 41.33 1.82
980 1108 2.343101 TGTCGCCAGTTGCATTAGTAC 58.657 47.619 0.00 0.00 41.33 2.73
981 1109 2.028476 TGTCGCCAGTTGCATTAGTACT 60.028 45.455 0.00 0.00 41.33 2.73
982 1110 2.603560 GTCGCCAGTTGCATTAGTACTC 59.396 50.000 0.00 0.00 41.33 2.59
983 1111 2.232696 TCGCCAGTTGCATTAGTACTCA 59.767 45.455 0.00 0.00 41.33 3.41
984 1112 2.604914 CGCCAGTTGCATTAGTACTCAG 59.395 50.000 0.00 0.00 41.33 3.35
993 1121 5.237815 TGCATTAGTACTCAGACCTTTGTG 58.762 41.667 0.00 0.00 0.00 3.33
1039 1176 5.287674 TGTCAAATCAGATGAGATCCTCC 57.712 43.478 0.00 0.00 0.00 4.30
1122 1259 1.153005 CCAGCAGAAGCCCATCTCC 60.153 63.158 0.00 0.00 43.56 3.71
1142 1279 0.255033 ATTGAGCTCATCAGGCAGCA 59.745 50.000 19.04 0.00 39.68 4.41
1245 1386 9.790344 ATCTTATTTTCCTCATGAATAGACTGG 57.210 33.333 0.00 0.00 31.67 4.00
1246 1387 8.213679 TCTTATTTTCCTCATGAATAGACTGGG 58.786 37.037 0.00 0.00 31.67 4.45
1247 1388 6.581388 ATTTTCCTCATGAATAGACTGGGA 57.419 37.500 0.00 0.00 31.67 4.37
1252 1394 4.349048 CCTCATGAATAGACTGGGATGGAA 59.651 45.833 0.00 0.00 0.00 3.53
1254 1396 6.466904 CCTCATGAATAGACTGGGATGGAATT 60.467 42.308 0.00 0.00 0.00 2.17
1266 1411 5.988287 TGGGATGGAATTAATTGGCTTTTC 58.012 37.500 5.17 0.00 0.00 2.29
1299 1451 4.430441 ACTTGTATCTTCCAAGGAGAGGT 58.570 43.478 5.28 0.00 42.84 3.85
1320 1472 6.915786 AGGTTAGGAATTAGGATGCTGATTT 58.084 36.000 5.71 0.00 0.00 2.17
1321 1473 6.774656 AGGTTAGGAATTAGGATGCTGATTTG 59.225 38.462 5.71 0.00 0.00 2.32
1332 1484 5.948162 AGGATGCTGATTTGACATAAGTTGT 59.052 36.000 0.00 0.00 42.79 3.32
1336 1492 7.036996 TGCTGATTTGACATAAGTTGTTTCA 57.963 32.000 0.00 0.00 39.18 2.69
1364 1522 9.096823 TGATCTTTAGTTAAGTAGGAACAAGGA 57.903 33.333 0.00 0.00 35.28 3.36
1365 1523 9.368674 GATCTTTAGTTAAGTAGGAACAAGGAC 57.631 37.037 0.00 0.00 35.28 3.85
1367 1525 8.707449 TCTTTAGTTAAGTAGGAACAAGGACAA 58.293 33.333 0.00 0.00 35.28 3.18
1384 1542 3.314635 GGACAATCTTGTGCTCATCCATC 59.685 47.826 7.25 0.00 44.78 3.51
1385 1543 4.197750 GACAATCTTGTGCTCATCCATCT 58.802 43.478 0.00 0.00 42.43 2.90
1386 1544 5.363101 GACAATCTTGTGCTCATCCATCTA 58.637 41.667 0.00 0.00 42.43 1.98
1387 1545 5.366460 ACAATCTTGTGCTCATCCATCTAG 58.634 41.667 0.00 0.00 40.49 2.43
1393 1551 4.729868 TGTGCTCATCCATCTAGCTAGTA 58.270 43.478 20.10 7.88 37.16 1.82
1397 1555 5.013599 TGCTCATCCATCTAGCTAGTAGAGA 59.986 44.000 20.10 12.91 41.28 3.10
1492 1654 5.070580 ACTCACCTTACTGCAAAGTCTAACT 59.929 40.000 0.00 0.00 0.00 2.24
1493 1655 5.925509 TCACCTTACTGCAAAGTCTAACTT 58.074 37.500 0.00 0.00 40.80 2.66
1494 1656 5.758296 TCACCTTACTGCAAAGTCTAACTTG 59.242 40.000 0.00 0.00 38.66 3.16
1495 1657 5.758296 CACCTTACTGCAAAGTCTAACTTGA 59.242 40.000 0.00 0.00 38.66 3.02
1496 1658 5.758784 ACCTTACTGCAAAGTCTAACTTGAC 59.241 40.000 0.00 0.00 38.66 3.18
1498 1660 6.073548 CCTTACTGCAAAGTCTAACTTGACTG 60.074 42.308 0.00 0.00 45.49 3.51
1507 1670 5.360591 AGTCTAACTTGACTGTGTTCCTTG 58.639 41.667 0.00 0.00 44.64 3.61
1525 1688 0.104855 TGTCAACGACAGAGCTTGCT 59.895 50.000 0.00 0.00 37.67 3.91
1585 1748 1.210967 AGGGACCGGAAATATCGCAAA 59.789 47.619 9.46 0.00 0.00 3.68
1589 1752 2.088423 ACCGGAAATATCGCAAAAGCA 58.912 42.857 9.46 0.00 0.00 3.91
1613 1776 1.826054 CCAAACCGGGTCACAGCAA 60.826 57.895 6.32 0.00 0.00 3.91
1660 1823 3.829601 CAGATAGGCCGATTTACTCCTCT 59.170 47.826 0.00 0.00 0.00 3.69
1717 1880 1.996191 GTCTTCTACAAAGGCAGAGCG 59.004 52.381 0.00 0.00 0.00 5.03
1819 6367 0.320374 TCGACAAGAACATCCCGCTT 59.680 50.000 0.00 0.00 0.00 4.68
1827 6375 4.481368 AGAACATCCCGCTTAATGTACA 57.519 40.909 0.00 0.00 35.10 2.90
1839 6387 7.250569 CCGCTTAATGTACACATTTCAATTCT 58.749 34.615 12.50 0.00 43.48 2.40
1931 6486 2.171448 ACAGGACTCTTGGACCATATGC 59.829 50.000 0.00 0.00 0.00 3.14
1934 6489 2.435805 GGACTCTTGGACCATATGCAGA 59.564 50.000 0.00 0.00 0.00 4.26
1937 6492 5.121380 ACTCTTGGACCATATGCAGAATT 57.879 39.130 0.00 0.00 0.00 2.17
1982 6537 2.434884 CAACGGGCGCTGTCTCAT 60.435 61.111 7.64 0.00 0.00 2.90
1983 6538 2.434884 AACGGGCGCTGTCTCATG 60.435 61.111 7.64 0.00 0.00 3.07
2028 6583 2.485814 GCACCTGAAGAACAACATCTCC 59.514 50.000 0.00 0.00 0.00 3.71
2079 6634 2.936919 TTTTGCTTCAGAGAGCTCCA 57.063 45.000 10.93 0.00 43.11 3.86
2081 6636 1.051008 TTGCTTCAGAGAGCTCCACA 58.949 50.000 10.93 0.00 43.11 4.17
2083 6638 1.206610 TGCTTCAGAGAGCTCCACATC 59.793 52.381 10.93 0.70 43.11 3.06
2120 6675 1.479323 GCAGTGGCACCATCAAATCAT 59.521 47.619 15.27 0.00 40.72 2.45
2126 6768 4.807304 GTGGCACCATCAAATCATTTCATC 59.193 41.667 6.29 0.00 0.00 2.92
2129 6771 5.394883 GGCACCATCAAATCATTTCATCAGT 60.395 40.000 0.00 0.00 0.00 3.41
2149 6791 3.136443 AGTTTCAACTGTGGTCCATCTCA 59.864 43.478 0.00 0.00 37.98 3.27
2159 6801 1.134551 GGTCCATCTCAGCAAGTCCTC 60.135 57.143 0.00 0.00 0.00 3.71
2193 6835 1.962807 TCTTGCCATTCCAAACACAGG 59.037 47.619 0.00 0.00 0.00 4.00
2202 6844 1.210931 CAAACACAGGCGCCATCAG 59.789 57.895 31.54 17.63 0.00 2.90
2203 6845 1.973281 AAACACAGGCGCCATCAGG 60.973 57.895 31.54 15.37 38.23 3.86
2221 6866 2.620112 GCAAGACCATGCGCACTGT 61.620 57.895 14.90 13.72 36.45 3.55
2222 6867 1.208358 CAAGACCATGCGCACTGTG 59.792 57.895 14.90 7.53 0.00 3.66
2223 6868 2.620112 AAGACCATGCGCACTGTGC 61.620 57.895 22.38 22.38 40.69 4.57
2243 6888 0.108615 CACCACCGCTCTTCTTCGAT 60.109 55.000 0.00 0.00 0.00 3.59
2249 6894 1.346538 GCTCTTCTTCGATGCGCAC 59.653 57.895 14.90 6.01 0.00 5.34
2271 6919 2.588314 GGCAGCCTGAGCAGATCG 60.588 66.667 3.29 0.00 43.56 3.69
2296 6947 4.137543 GGATTTGTGACTGGTTCTTCTGT 58.862 43.478 0.00 0.00 0.00 3.41
2297 6948 4.023707 GGATTTGTGACTGGTTCTTCTGTG 60.024 45.833 0.00 0.00 0.00 3.66
2310 6961 5.710099 GGTTCTTCTGTGGATGTAAATTCCA 59.290 40.000 0.00 0.00 40.96 3.53
2350 7001 0.716108 GAGTCATCCACAACGAAGCG 59.284 55.000 0.00 0.00 0.00 4.68
2356 7007 4.368808 CACAACGAAGCGTGGCGG 62.369 66.667 0.00 0.00 39.99 6.13
2359 7010 2.029369 AACGAAGCGTGGCGGTAA 59.971 55.556 0.00 0.00 39.99 2.85
2381 7035 3.874383 TTCAGGAACAATGAGTGGGAA 57.126 42.857 0.00 0.00 0.00 3.97
2387 7047 1.067295 ACAATGAGTGGGAAGCTCCA 58.933 50.000 0.00 0.00 38.64 3.86
2389 7049 1.280133 CAATGAGTGGGAAGCTCCAGA 59.720 52.381 0.00 0.00 38.64 3.86
2397 7057 0.738389 GGAAGCTCCAGAGAGACTCG 59.262 60.000 0.00 0.00 43.39 4.18
2410 7070 0.818296 AGACTCGACTTCCCATTCGG 59.182 55.000 0.00 0.00 35.89 4.30
2416 7076 2.564062 TCGACTTCCCATTCGGTTTAGT 59.436 45.455 0.00 0.00 35.89 2.24
2419 7079 4.142315 CGACTTCCCATTCGGTTTAGTAGA 60.142 45.833 0.00 0.00 0.00 2.59
2423 7083 6.156429 ACTTCCCATTCGGTTTAGTAGAAGAT 59.844 38.462 0.00 0.00 33.95 2.40
2507 7167 2.697229 TGAGATCCCACAGCACTAGATG 59.303 50.000 0.00 0.00 37.14 2.90
2521 7185 0.487325 TAGATGCCTAGCCTGCCCTA 59.513 55.000 0.00 0.00 0.00 3.53
2524 7188 0.988145 ATGCCTAGCCTGCCCTACAA 60.988 55.000 0.00 0.00 0.00 2.41
2525 7189 1.147153 GCCTAGCCTGCCCTACAAG 59.853 63.158 0.00 0.00 0.00 3.16
2529 7193 0.042731 TAGCCTGCCCTACAAGGAGT 59.957 55.000 0.00 0.00 37.67 3.85
2530 7194 1.078143 GCCTGCCCTACAAGGAGTG 60.078 63.158 0.00 0.00 37.67 3.51
2531 7195 1.604378 CCTGCCCTACAAGGAGTGG 59.396 63.158 0.00 0.00 37.67 4.00
2532 7196 0.909610 CCTGCCCTACAAGGAGTGGA 60.910 60.000 0.00 0.00 37.67 4.02
2533 7197 0.984230 CTGCCCTACAAGGAGTGGAA 59.016 55.000 0.00 0.00 37.67 3.53
2534 7198 0.984230 TGCCCTACAAGGAGTGGAAG 59.016 55.000 0.00 0.00 37.67 3.46
2535 7199 0.253327 GCCCTACAAGGAGTGGAAGG 59.747 60.000 0.00 0.00 37.67 3.46
2536 7200 1.657804 CCCTACAAGGAGTGGAAGGT 58.342 55.000 0.00 0.00 37.67 3.50
2537 7201 1.279271 CCCTACAAGGAGTGGAAGGTG 59.721 57.143 0.00 0.00 37.67 4.00
2538 7202 1.978580 CCTACAAGGAGTGGAAGGTGT 59.021 52.381 0.00 0.00 37.67 4.16
2539 7203 2.289694 CCTACAAGGAGTGGAAGGTGTG 60.290 54.545 0.00 0.00 37.67 3.82
2540 7204 0.179018 ACAAGGAGTGGAAGGTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
2541 7205 1.071471 AAGGAGTGGAAGGTGTGCG 59.929 57.895 0.00 0.00 0.00 5.34
2542 7206 3.050275 GGAGTGGAAGGTGTGCGC 61.050 66.667 0.00 0.00 0.00 6.09
2543 7207 3.050275 GAGTGGAAGGTGTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
2544 7208 3.825160 GAGTGGAAGGTGTGCGCCA 62.825 63.158 4.18 0.00 0.00 5.69
2545 7209 3.660111 GTGGAAGGTGTGCGCCAC 61.660 66.667 17.46 17.46 43.34 5.01
2552 7216 2.870372 GTGTGCGCCACCTTCATC 59.130 61.111 15.54 0.00 38.18 2.92
2553 7217 1.672356 GTGTGCGCCACCTTCATCT 60.672 57.895 15.54 0.00 38.18 2.90
2554 7218 1.672030 TGTGCGCCACCTTCATCTG 60.672 57.895 4.18 0.00 32.73 2.90
2578 7255 2.892852 AGCATTTCTGTTAGCAAAGGCA 59.107 40.909 3.97 0.00 40.81 4.75
2585 7262 1.073125 TGTTAGCAAAGGCACCAGCTA 59.927 47.619 4.91 4.91 44.61 3.32
2595 7272 2.965147 AGGCACCAGCTATTGTTTGTTT 59.035 40.909 0.00 0.00 41.70 2.83
2604 7281 7.147811 ACCAGCTATTGTTTGTTTAGTTTTGGA 60.148 33.333 0.00 0.00 0.00 3.53
2606 7283 8.915654 CAGCTATTGTTTGTTTAGTTTTGGATC 58.084 33.333 0.00 0.00 0.00 3.36
2614 7291 9.394477 GTTTGTTTAGTTTTGGATCAGATGTAC 57.606 33.333 0.00 0.00 0.00 2.90
2652 7329 4.225267 AGCTATACCCTTGTTAACAGCAGT 59.775 41.667 8.56 9.57 0.00 4.40
2660 7337 4.319766 CCTTGTTAACAGCAGTGCTAACAG 60.320 45.833 23.89 18.95 43.03 3.16
2867 16374 5.414454 TGCTAAACATTTAACTCGAGGCAAT 59.586 36.000 18.41 8.65 0.00 3.56
2936 16451 0.871722 AGCAGCGCAACGTCAATTTA 59.128 45.000 11.47 0.00 0.00 1.40
3018 16534 2.816087 GCAATCTTCTGCTCTTTGACCA 59.184 45.455 0.00 0.00 39.34 4.02
3044 16560 2.093500 AGCACGAATAATCCTGCACAGA 60.093 45.455 0.00 0.00 39.27 3.41
3247 16764 6.545504 TCTGAAAATGAGAACTTGCAGTAC 57.454 37.500 0.00 0.00 0.00 2.73
3248 16765 6.054941 TCTGAAAATGAGAACTTGCAGTACA 58.945 36.000 0.00 0.00 0.00 2.90
3250 16767 7.229306 TCTGAAAATGAGAACTTGCAGTACAAT 59.771 33.333 0.00 0.00 37.72 2.71
3251 16768 7.140705 TGAAAATGAGAACTTGCAGTACAATG 58.859 34.615 0.00 0.00 37.72 2.82
3253 16770 2.813754 TGAGAACTTGCAGTACAATGCC 59.186 45.455 4.79 0.00 45.91 4.40
3254 16771 2.813754 GAGAACTTGCAGTACAATGCCA 59.186 45.455 4.79 0.00 45.91 4.92
3255 16772 2.554032 AGAACTTGCAGTACAATGCCAC 59.446 45.455 4.79 0.00 45.91 5.01
3257 16774 2.517959 ACTTGCAGTACAATGCCACAT 58.482 42.857 4.79 0.00 45.91 3.21
3400 17000 6.542821 TCAAGCTTCTTTTTAGGATTCAGGA 58.457 36.000 0.00 0.00 0.00 3.86
3481 17081 3.625764 TGTGCCTAGTTCAAACAGACAAC 59.374 43.478 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.563786 GGAACAGAAGGTCCTTACTCCAAG 60.564 50.000 3.42 0.00 0.00 3.61
1 2 3.326880 GGAACAGAAGGTCCTTACTCCAA 59.673 47.826 3.42 0.00 0.00 3.53
2 3 2.904434 GGAACAGAAGGTCCTTACTCCA 59.096 50.000 3.42 0.00 0.00 3.86
5 6 3.714798 TGTTGGAACAGAAGGTCCTTACT 59.285 43.478 3.42 0.98 42.39 2.24
6 7 3.813724 GTGTTGGAACAGAAGGTCCTTAC 59.186 47.826 3.42 0.00 42.39 2.34
7 8 3.714798 AGTGTTGGAACAGAAGGTCCTTA 59.285 43.478 3.42 0.00 42.39 2.69
8 9 2.509964 AGTGTTGGAACAGAAGGTCCTT 59.490 45.455 2.95 2.95 42.39 3.36
9 10 2.104963 GAGTGTTGGAACAGAAGGTCCT 59.895 50.000 0.81 0.00 42.39 3.85
10 11 2.104963 AGAGTGTTGGAACAGAAGGTCC 59.895 50.000 0.00 0.00 42.39 4.46
11 12 3.134458 CAGAGTGTTGGAACAGAAGGTC 58.866 50.000 0.00 0.00 42.39 3.85
12 13 2.746472 GCAGAGTGTTGGAACAGAAGGT 60.746 50.000 0.00 0.00 42.39 3.50
13 14 1.876156 GCAGAGTGTTGGAACAGAAGG 59.124 52.381 0.00 0.00 42.39 3.46
14 15 2.843701 AGCAGAGTGTTGGAACAGAAG 58.156 47.619 0.00 0.00 42.39 2.85
15 16 3.803715 GCTAGCAGAGTGTTGGAACAGAA 60.804 47.826 10.63 0.00 42.39 3.02
16 17 2.289072 GCTAGCAGAGTGTTGGAACAGA 60.289 50.000 10.63 0.00 42.39 3.41
17 18 2.072298 GCTAGCAGAGTGTTGGAACAG 58.928 52.381 10.63 0.00 42.39 3.16
18 19 1.416030 TGCTAGCAGAGTGTTGGAACA 59.584 47.619 14.93 0.00 36.38 3.18
19 20 2.072298 CTGCTAGCAGAGTGTTGGAAC 58.928 52.381 36.47 0.00 46.30 3.62
20 21 1.970640 TCTGCTAGCAGAGTGTTGGAA 59.029 47.619 37.64 16.91 46.80 3.53
21 22 1.632589 TCTGCTAGCAGAGTGTTGGA 58.367 50.000 37.64 17.81 46.80 3.53
30 31 2.191802 CGTGAATGACTCTGCTAGCAG 58.808 52.381 34.48 34.48 44.86 4.24
31 32 1.737029 GCGTGAATGACTCTGCTAGCA 60.737 52.381 18.22 18.22 0.00 3.49
32 33 0.926846 GCGTGAATGACTCTGCTAGC 59.073 55.000 8.10 8.10 0.00 3.42
33 34 2.575694 AGCGTGAATGACTCTGCTAG 57.424 50.000 0.00 0.00 35.52 3.42
34 35 3.017442 ACTAGCGTGAATGACTCTGCTA 58.983 45.455 0.00 0.00 37.55 3.49
35 36 1.821753 ACTAGCGTGAATGACTCTGCT 59.178 47.619 0.00 0.00 39.08 4.24
36 37 2.285827 ACTAGCGTGAATGACTCTGC 57.714 50.000 0.00 0.00 0.00 4.26
37 38 6.972901 TGTATAAACTAGCGTGAATGACTCTG 59.027 38.462 0.00 0.00 0.00 3.35
38 39 7.096884 TGTATAAACTAGCGTGAATGACTCT 57.903 36.000 0.00 0.00 0.00 3.24
39 40 7.751047 TTGTATAAACTAGCGTGAATGACTC 57.249 36.000 0.00 0.00 0.00 3.36
40 41 8.542497 TTTTGTATAAACTAGCGTGAATGACT 57.458 30.769 0.00 0.00 0.00 3.41
41 42 8.440833 ACTTTTGTATAAACTAGCGTGAATGAC 58.559 33.333 0.00 0.00 0.00 3.06
42 43 8.440059 CACTTTTGTATAAACTAGCGTGAATGA 58.560 33.333 0.00 0.00 0.00 2.57
43 44 7.216317 GCACTTTTGTATAAACTAGCGTGAATG 59.784 37.037 0.00 0.00 0.00 2.67
44 45 7.094975 TGCACTTTTGTATAAACTAGCGTGAAT 60.095 33.333 0.00 0.00 0.00 2.57
45 46 6.203145 TGCACTTTTGTATAAACTAGCGTGAA 59.797 34.615 0.00 0.00 0.00 3.18
46 47 5.697178 TGCACTTTTGTATAAACTAGCGTGA 59.303 36.000 0.00 0.00 0.00 4.35
47 48 5.922546 TGCACTTTTGTATAAACTAGCGTG 58.077 37.500 0.00 0.00 0.00 5.34
48 49 6.548441 TTGCACTTTTGTATAAACTAGCGT 57.452 33.333 0.00 0.00 0.00 5.07
49 50 7.845617 TTTTGCACTTTTGTATAAACTAGCG 57.154 32.000 0.00 0.00 0.00 4.26
50 51 9.458374 TCTTTTTGCACTTTTGTATAAACTAGC 57.542 29.630 0.00 0.00 0.00 3.42
55 56 9.809096 TGTGATCTTTTTGCACTTTTGTATAAA 57.191 25.926 0.00 0.00 33.83 1.40
56 57 9.243637 GTGTGATCTTTTTGCACTTTTGTATAA 57.756 29.630 0.00 0.00 33.83 0.98
57 58 8.629158 AGTGTGATCTTTTTGCACTTTTGTATA 58.371 29.630 0.00 0.00 37.12 1.47
58 59 7.436080 CAGTGTGATCTTTTTGCACTTTTGTAT 59.564 33.333 0.00 0.00 38.21 2.29
59 60 6.751425 CAGTGTGATCTTTTTGCACTTTTGTA 59.249 34.615 0.00 0.00 38.21 2.41
60 61 5.577945 CAGTGTGATCTTTTTGCACTTTTGT 59.422 36.000 0.00 0.00 38.21 2.83
61 62 5.005971 CCAGTGTGATCTTTTTGCACTTTTG 59.994 40.000 0.00 0.00 38.21 2.44
62 63 5.111293 CCAGTGTGATCTTTTTGCACTTTT 58.889 37.500 0.00 0.00 38.21 2.27
63 64 4.160252 ACCAGTGTGATCTTTTTGCACTTT 59.840 37.500 0.00 0.00 38.21 2.66
64 65 3.701040 ACCAGTGTGATCTTTTTGCACTT 59.299 39.130 0.00 0.00 38.21 3.16
65 66 3.290710 ACCAGTGTGATCTTTTTGCACT 58.709 40.909 0.00 0.00 40.54 4.40
66 67 3.715628 ACCAGTGTGATCTTTTTGCAC 57.284 42.857 0.00 0.00 0.00 4.57
67 68 4.278170 CCTTACCAGTGTGATCTTTTTGCA 59.722 41.667 0.00 0.00 0.00 4.08
68 69 4.798574 CCTTACCAGTGTGATCTTTTTGC 58.201 43.478 0.00 0.00 0.00 3.68
69 70 4.321230 GGCCTTACCAGTGTGATCTTTTTG 60.321 45.833 0.00 0.00 38.86 2.44
70 71 3.826729 GGCCTTACCAGTGTGATCTTTTT 59.173 43.478 0.00 0.00 38.86 1.94
71 72 3.181434 TGGCCTTACCAGTGTGATCTTTT 60.181 43.478 3.32 0.00 46.36 2.27
72 73 2.375174 TGGCCTTACCAGTGTGATCTTT 59.625 45.455 3.32 0.00 46.36 2.52
73 74 1.985159 TGGCCTTACCAGTGTGATCTT 59.015 47.619 3.32 0.00 46.36 2.40
74 75 1.656587 TGGCCTTACCAGTGTGATCT 58.343 50.000 3.32 0.00 46.36 2.75
105 106 8.825745 CCAGTGTACTTTATTTGTTTGCATTTT 58.174 29.630 0.00 0.00 0.00 1.82
106 107 7.984617 ACCAGTGTACTTTATTTGTTTGCATTT 59.015 29.630 0.00 0.00 0.00 2.32
107 108 7.496747 ACCAGTGTACTTTATTTGTTTGCATT 58.503 30.769 0.00 0.00 0.00 3.56
108 109 7.049799 ACCAGTGTACTTTATTTGTTTGCAT 57.950 32.000 0.00 0.00 0.00 3.96
109 110 6.458232 ACCAGTGTACTTTATTTGTTTGCA 57.542 33.333 0.00 0.00 0.00 4.08
110 111 7.593644 CCTTACCAGTGTACTTTATTTGTTTGC 59.406 37.037 0.00 0.00 0.00 3.68
111 112 7.593644 GCCTTACCAGTGTACTTTATTTGTTTG 59.406 37.037 0.00 0.00 0.00 2.93
112 113 7.255695 GGCCTTACCAGTGTACTTTATTTGTTT 60.256 37.037 0.00 0.00 38.86 2.83
113 114 6.208007 GGCCTTACCAGTGTACTTTATTTGTT 59.792 38.462 0.00 0.00 38.86 2.83
114 115 5.708697 GGCCTTACCAGTGTACTTTATTTGT 59.291 40.000 0.00 0.00 38.86 2.83
115 116 5.708230 TGGCCTTACCAGTGTACTTTATTTG 59.292 40.000 3.32 0.00 46.36 2.32
116 117 5.883180 TGGCCTTACCAGTGTACTTTATTT 58.117 37.500 3.32 0.00 46.36 1.40
117 118 5.508280 TGGCCTTACCAGTGTACTTTATT 57.492 39.130 3.32 0.00 46.36 1.40
130 131 2.039084 CAGGGATAGTGATGGCCTTACC 59.961 54.545 3.32 0.00 39.84 2.85
131 132 2.039084 CCAGGGATAGTGATGGCCTTAC 59.961 54.545 3.32 0.00 0.00 2.34
132 133 2.338809 CCAGGGATAGTGATGGCCTTA 58.661 52.381 3.32 0.00 0.00 2.69
133 134 1.143813 CCAGGGATAGTGATGGCCTT 58.856 55.000 3.32 0.00 0.00 4.35
134 135 0.769776 CCCAGGGATAGTGATGGCCT 60.770 60.000 0.00 0.00 0.00 5.19
135 136 1.062488 ACCCAGGGATAGTGATGGCC 61.062 60.000 14.54 0.00 0.00 5.36
136 137 1.729586 TACCCAGGGATAGTGATGGC 58.270 55.000 14.54 0.00 0.00 4.40
137 138 3.909995 TGATTACCCAGGGATAGTGATGG 59.090 47.826 14.54 0.00 0.00 3.51
138 139 4.594920 ACTGATTACCCAGGGATAGTGATG 59.405 45.833 14.54 0.00 38.44 3.07
139 140 4.832492 ACTGATTACCCAGGGATAGTGAT 58.168 43.478 14.54 0.00 38.44 3.06
140 141 4.078571 AGACTGATTACCCAGGGATAGTGA 60.079 45.833 14.54 0.00 38.44 3.41
141 142 4.039730 CAGACTGATTACCCAGGGATAGTG 59.960 50.000 14.54 0.00 38.44 2.74
142 143 4.227197 CAGACTGATTACCCAGGGATAGT 58.773 47.826 14.54 8.46 38.44 2.12
143 144 4.227197 ACAGACTGATTACCCAGGGATAG 58.773 47.826 14.54 5.14 38.44 2.08
144 145 4.280789 ACAGACTGATTACCCAGGGATA 57.719 45.455 14.54 0.00 38.44 2.59
145 146 3.136641 ACAGACTGATTACCCAGGGAT 57.863 47.619 14.54 0.00 38.44 3.85
146 147 2.642171 ACAGACTGATTACCCAGGGA 57.358 50.000 14.54 0.00 38.44 4.20
147 148 3.104512 TGTACAGACTGATTACCCAGGG 58.895 50.000 10.08 2.85 38.44 4.45
148 149 4.651503 AGATGTACAGACTGATTACCCAGG 59.348 45.833 10.08 0.00 38.44 4.45
149 150 5.596361 AGAGATGTACAGACTGATTACCCAG 59.404 44.000 10.08 0.00 39.93 4.45
150 151 5.519808 AGAGATGTACAGACTGATTACCCA 58.480 41.667 10.08 0.00 0.00 4.51
151 152 5.830991 AGAGAGATGTACAGACTGATTACCC 59.169 44.000 10.08 0.00 0.00 3.69
152 153 6.544197 TGAGAGAGATGTACAGACTGATTACC 59.456 42.308 10.08 0.00 0.00 2.85
153 154 7.066404 TGTGAGAGAGATGTACAGACTGATTAC 59.934 40.741 10.08 2.86 0.00 1.89
154 155 7.066404 GTGTGAGAGAGATGTACAGACTGATTA 59.934 40.741 10.08 0.00 0.00 1.75
155 156 5.948758 TGTGAGAGAGATGTACAGACTGATT 59.051 40.000 10.08 0.00 0.00 2.57
156 157 5.356751 GTGTGAGAGAGATGTACAGACTGAT 59.643 44.000 10.08 0.00 0.00 2.90
157 158 4.697828 GTGTGAGAGAGATGTACAGACTGA 59.302 45.833 10.08 0.00 0.00 3.41
158 159 4.457257 TGTGTGAGAGAGATGTACAGACTG 59.543 45.833 0.33 0.00 0.00 3.51
159 160 4.457603 GTGTGTGAGAGAGATGTACAGACT 59.542 45.833 0.33 3.26 34.07 3.24
160 161 4.670478 CGTGTGTGAGAGAGATGTACAGAC 60.670 50.000 0.33 0.00 33.69 3.51
161 162 3.437049 CGTGTGTGAGAGAGATGTACAGA 59.563 47.826 0.33 0.00 0.00 3.41
162 163 3.752731 CGTGTGTGAGAGAGATGTACAG 58.247 50.000 0.33 0.00 0.00 2.74
163 164 2.095212 GCGTGTGTGAGAGAGATGTACA 60.095 50.000 0.00 0.00 0.00 2.90
164 165 2.095212 TGCGTGTGTGAGAGAGATGTAC 60.095 50.000 0.00 0.00 0.00 2.90
165 166 2.095212 GTGCGTGTGTGAGAGAGATGTA 60.095 50.000 0.00 0.00 0.00 2.29
166 167 0.961753 TGCGTGTGTGAGAGAGATGT 59.038 50.000 0.00 0.00 0.00 3.06
167 168 1.344458 GTGCGTGTGTGAGAGAGATG 58.656 55.000 0.00 0.00 0.00 2.90
168 169 0.109551 CGTGCGTGTGTGAGAGAGAT 60.110 55.000 0.00 0.00 0.00 2.75
169 170 1.282875 CGTGCGTGTGTGAGAGAGA 59.717 57.895 0.00 0.00 0.00 3.10
170 171 2.368105 GCGTGCGTGTGTGAGAGAG 61.368 63.158 0.00 0.00 0.00 3.20
171 172 2.354656 GCGTGCGTGTGTGAGAGA 60.355 61.111 0.00 0.00 0.00 3.10
172 173 3.756677 CGCGTGCGTGTGTGAGAG 61.757 66.667 6.00 0.00 34.35 3.20
183 184 0.179202 TTCAATATGTGTGCGCGTGC 60.179 50.000 15.48 15.48 43.20 5.34
184 185 1.801618 CTTCAATATGTGTGCGCGTG 58.198 50.000 8.43 0.00 0.00 5.34
185 186 0.096976 GCTTCAATATGTGTGCGCGT 59.903 50.000 8.43 0.00 0.00 6.01
186 187 0.374758 AGCTTCAATATGTGTGCGCG 59.625 50.000 0.00 0.00 34.57 6.86
187 188 2.549633 AAGCTTCAATATGTGTGCGC 57.450 45.000 0.00 0.00 34.57 6.09
188 189 4.512944 AGGATAAGCTTCAATATGTGTGCG 59.487 41.667 0.00 0.00 34.57 5.34
189 190 7.496529 TTAGGATAAGCTTCAATATGTGTGC 57.503 36.000 0.00 0.00 0.00 4.57
190 191 9.276590 TGATTAGGATAAGCTTCAATATGTGTG 57.723 33.333 0.00 0.00 0.00 3.82
191 192 9.851686 TTGATTAGGATAAGCTTCAATATGTGT 57.148 29.630 0.00 0.00 0.00 3.72
196 197 9.353431 TGCATTTGATTAGGATAAGCTTCAATA 57.647 29.630 0.00 0.00 0.00 1.90
197 198 8.241497 TGCATTTGATTAGGATAAGCTTCAAT 57.759 30.769 0.00 0.00 0.00 2.57
198 199 7.643569 TGCATTTGATTAGGATAAGCTTCAA 57.356 32.000 0.00 0.00 0.00 2.69
199 200 7.643569 TTGCATTTGATTAGGATAAGCTTCA 57.356 32.000 0.00 0.00 0.00 3.02
200 201 9.538508 AATTTGCATTTGATTAGGATAAGCTTC 57.461 29.630 0.00 0.00 0.00 3.86
202 203 9.971922 GTAATTTGCATTTGATTAGGATAAGCT 57.028 29.630 0.00 0.00 0.00 3.74
203 204 9.748708 TGTAATTTGCATTTGATTAGGATAAGC 57.251 29.630 0.00 0.00 0.00 3.09
212 213 9.991388 GCATTTGTATGTAATTTGCATTTGATT 57.009 25.926 5.28 0.00 34.12 2.57
213 214 8.614346 GGCATTTGTATGTAATTTGCATTTGAT 58.386 29.630 5.28 0.00 34.12 2.57
214 215 7.065563 GGGCATTTGTATGTAATTTGCATTTGA 59.934 33.333 5.28 0.00 34.12 2.69
215 216 7.188157 GGGCATTTGTATGTAATTTGCATTTG 58.812 34.615 5.28 0.00 34.12 2.32
216 217 6.318396 GGGGCATTTGTATGTAATTTGCATTT 59.682 34.615 5.28 0.00 34.12 2.32
217 218 5.821995 GGGGCATTTGTATGTAATTTGCATT 59.178 36.000 5.28 0.00 34.12 3.56
218 219 5.367302 GGGGCATTTGTATGTAATTTGCAT 58.633 37.500 5.31 5.31 34.12 3.96
219 220 4.383552 GGGGGCATTTGTATGTAATTTGCA 60.384 41.667 0.00 0.00 34.12 4.08
220 221 4.126437 GGGGGCATTTGTATGTAATTTGC 58.874 43.478 0.00 0.00 34.12 3.68
221 222 5.350504 TGGGGGCATTTGTATGTAATTTG 57.649 39.130 0.00 0.00 34.12 2.32
222 223 6.380079 TTTGGGGGCATTTGTATGTAATTT 57.620 33.333 0.00 0.00 34.12 1.82
223 224 5.628899 GCTTTGGGGGCATTTGTATGTAATT 60.629 40.000 0.00 0.00 34.12 1.40
224 225 4.141733 GCTTTGGGGGCATTTGTATGTAAT 60.142 41.667 0.00 0.00 34.12 1.89
225 226 3.196685 GCTTTGGGGGCATTTGTATGTAA 59.803 43.478 0.00 0.00 34.12 2.41
226 227 2.763448 GCTTTGGGGGCATTTGTATGTA 59.237 45.455 0.00 0.00 34.12 2.29
227 228 1.554617 GCTTTGGGGGCATTTGTATGT 59.445 47.619 0.00 0.00 34.12 2.29
228 229 1.134431 GGCTTTGGGGGCATTTGTATG 60.134 52.381 0.00 0.00 34.76 2.39
229 230 1.203237 GGCTTTGGGGGCATTTGTAT 58.797 50.000 0.00 0.00 0.00 2.29
230 231 0.116143 AGGCTTTGGGGGCATTTGTA 59.884 50.000 0.00 0.00 0.00 2.41
231 232 0.116143 TAGGCTTTGGGGGCATTTGT 59.884 50.000 0.00 0.00 0.00 2.83
232 233 0.826062 CTAGGCTTTGGGGGCATTTG 59.174 55.000 0.00 0.00 0.00 2.32
233 234 0.709992 TCTAGGCTTTGGGGGCATTT 59.290 50.000 0.00 0.00 0.00 2.32
234 235 0.033109 GTCTAGGCTTTGGGGGCATT 60.033 55.000 0.00 0.00 0.00 3.56
235 236 0.921256 AGTCTAGGCTTTGGGGGCAT 60.921 55.000 0.00 0.00 0.00 4.40
236 237 0.252974 TAGTCTAGGCTTTGGGGGCA 60.253 55.000 0.11 0.00 0.00 5.36
237 238 0.470341 CTAGTCTAGGCTTTGGGGGC 59.530 60.000 0.11 0.00 0.00 5.80
238 239 1.763545 GACTAGTCTAGGCTTTGGGGG 59.236 57.143 15.91 0.00 0.00 5.40
239 240 2.432510 CTGACTAGTCTAGGCTTTGGGG 59.567 54.545 23.01 0.00 33.94 4.96
240 241 2.432510 CCTGACTAGTCTAGGCTTTGGG 59.567 54.545 23.01 7.14 33.94 4.12
241 242 3.366396 TCCTGACTAGTCTAGGCTTTGG 58.634 50.000 25.03 12.50 33.94 3.28
242 243 5.407407 TTTCCTGACTAGTCTAGGCTTTG 57.593 43.478 25.03 0.00 33.94 2.77
243 244 5.544562 AGTTTTCCTGACTAGTCTAGGCTTT 59.455 40.000 25.03 12.80 33.94 3.51
244 245 5.046950 CAGTTTTCCTGACTAGTCTAGGCTT 60.047 44.000 25.03 12.57 44.49 4.35
245 246 4.464597 CAGTTTTCCTGACTAGTCTAGGCT 59.535 45.833 25.03 17.56 44.49 4.58
246 247 4.749976 CAGTTTTCCTGACTAGTCTAGGC 58.250 47.826 25.03 8.86 44.49 3.93
247 248 4.220821 TGCAGTTTTCCTGACTAGTCTAGG 59.779 45.833 24.37 24.37 44.49 3.02
248 249 5.392767 TGCAGTTTTCCTGACTAGTCTAG 57.607 43.478 23.01 17.12 44.49 2.43
249 250 7.476540 TTATGCAGTTTTCCTGACTAGTCTA 57.523 36.000 23.01 9.26 44.49 2.59
250 251 4.899352 ATGCAGTTTTCCTGACTAGTCT 57.101 40.909 23.01 0.00 44.49 3.24
251 252 7.435068 TTTTATGCAGTTTTCCTGACTAGTC 57.565 36.000 16.32 16.32 44.49 2.59
252 253 7.817418 TTTTTATGCAGTTTTCCTGACTAGT 57.183 32.000 0.00 0.00 44.49 2.57
277 278 4.340950 ACCAAAATTCTCCGTTTCATGTGT 59.659 37.500 0.00 0.00 0.00 3.72
278 279 4.870363 ACCAAAATTCTCCGTTTCATGTG 58.130 39.130 0.00 0.00 0.00 3.21
298 300 7.922811 ACTCTTTTGATTTTGATGTCTGAAACC 59.077 33.333 0.00 0.00 0.00 3.27
337 339 2.542020 TGAGGCTTCATGAAACGTCA 57.458 45.000 23.42 23.42 38.41 4.35
341 343 4.759183 ACTCTTCTTGAGGCTTCATGAAAC 59.241 41.667 22.09 4.82 46.72 2.78
342 344 4.978099 ACTCTTCTTGAGGCTTCATGAAA 58.022 39.130 22.09 14.44 46.72 2.69
343 345 4.630644 ACTCTTCTTGAGGCTTCATGAA 57.369 40.909 21.04 21.04 46.72 2.57
344 346 4.321718 CAACTCTTCTTGAGGCTTCATGA 58.678 43.478 9.96 9.96 46.72 3.07
347 349 2.158769 TGCAACTCTTCTTGAGGCTTCA 60.159 45.455 0.00 0.00 46.72 3.02
348 350 2.483491 CTGCAACTCTTCTTGAGGCTTC 59.517 50.000 0.00 0.00 46.72 3.86
349 351 2.105477 TCTGCAACTCTTCTTGAGGCTT 59.895 45.455 0.00 0.00 46.72 4.35
350 352 1.696336 TCTGCAACTCTTCTTGAGGCT 59.304 47.619 0.00 0.00 46.72 4.58
351 353 2.075338 CTCTGCAACTCTTCTTGAGGC 58.925 52.381 0.00 0.00 46.72 4.70
352 354 3.399440 ACTCTGCAACTCTTCTTGAGG 57.601 47.619 0.00 0.00 46.72 3.86
377 379 2.118313 ACCCCAATTACGGCAGTAAC 57.882 50.000 11.75 0.00 44.62 2.50
384 386 3.303049 AGTAGGAGTACCCCAATTACGG 58.697 50.000 0.00 0.00 36.73 4.02
389 391 9.854303 AATAATACATAGTAGGAGTACCCCAAT 57.146 33.333 0.00 0.00 36.73 3.16
424 426 2.652348 TCTTTGGCCTCCCCAGATAAAA 59.348 45.455 3.32 0.00 46.39 1.52
438 440 6.503524 TGAGTTTTAGTGTTTCATCTTTGGC 58.496 36.000 0.00 0.00 0.00 4.52
440 442 8.534778 GCTTTGAGTTTTAGTGTTTCATCTTTG 58.465 33.333 0.00 0.00 0.00 2.77
454 456 8.947115 GCCTTCTAGATTTAGCTTTGAGTTTTA 58.053 33.333 0.00 0.00 0.00 1.52
459 466 6.597280 ACTTGCCTTCTAGATTTAGCTTTGAG 59.403 38.462 0.00 0.00 0.00 3.02
465 474 5.412904 ACAACACTTGCCTTCTAGATTTAGC 59.587 40.000 0.00 0.00 0.00 3.09
493 508 4.742659 GCGGCAGTCAAAACATTCTTAAAA 59.257 37.500 0.00 0.00 0.00 1.52
516 531 7.121911 CACTTCATGCTTAGAATATTCACGTG 58.878 38.462 17.56 9.94 0.00 4.49
533 548 7.115805 CCAATCATTTTCAGTTCACACTTCATG 59.884 37.037 0.00 0.00 0.00 3.07
534 549 7.149973 CCAATCATTTTCAGTTCACACTTCAT 58.850 34.615 0.00 0.00 0.00 2.57
535 550 6.506147 CCAATCATTTTCAGTTCACACTTCA 58.494 36.000 0.00 0.00 0.00 3.02
536 551 5.403466 GCCAATCATTTTCAGTTCACACTTC 59.597 40.000 0.00 0.00 0.00 3.01
537 552 5.163426 TGCCAATCATTTTCAGTTCACACTT 60.163 36.000 0.00 0.00 0.00 3.16
538 553 4.341806 TGCCAATCATTTTCAGTTCACACT 59.658 37.500 0.00 0.00 0.00 3.55
539 554 4.619973 TGCCAATCATTTTCAGTTCACAC 58.380 39.130 0.00 0.00 0.00 3.82
552 567 1.968493 GCATGAAGGGATGCCAATCAT 59.032 47.619 15.80 15.80 42.57 2.45
632 703 0.178961 AAGGGGTGCCAGTCCTTTTC 60.179 55.000 0.00 0.00 37.60 2.29
633 704 0.178961 GAAGGGGTGCCAGTCCTTTT 60.179 55.000 0.75 0.00 40.61 2.27
636 707 1.542375 ATGAAGGGGTGCCAGTCCT 60.542 57.895 0.00 0.00 0.00 3.85
637 708 1.379044 CATGAAGGGGTGCCAGTCC 60.379 63.158 0.00 0.00 0.00 3.85
644 715 2.322355 CTGAGTAGCATGAAGGGGTG 57.678 55.000 0.00 0.00 0.00 4.61
656 727 5.718146 TCTCAATGAAGACAAGCTGAGTAG 58.282 41.667 0.00 0.00 35.14 2.57
657 728 5.728637 TCTCAATGAAGACAAGCTGAGTA 57.271 39.130 0.00 0.00 35.14 2.59
658 729 4.613925 TCTCAATGAAGACAAGCTGAGT 57.386 40.909 0.00 0.00 35.14 3.41
659 730 6.339730 AGTATCTCAATGAAGACAAGCTGAG 58.660 40.000 0.00 0.00 35.02 3.35
661 732 8.659925 ATTAGTATCTCAATGAAGACAAGCTG 57.340 34.615 0.00 0.00 0.00 4.24
663 734 7.712639 TGGATTAGTATCTCAATGAAGACAAGC 59.287 37.037 0.00 0.00 0.00 4.01
666 737 7.565029 TCCTGGATTAGTATCTCAATGAAGACA 59.435 37.037 0.00 0.00 0.00 3.41
667 738 7.957002 TCCTGGATTAGTATCTCAATGAAGAC 58.043 38.462 0.00 0.00 0.00 3.01
680 751 9.146984 CGCGATTAATTTAATCCTGGATTAGTA 57.853 33.333 24.06 18.00 41.10 1.82
681 752 7.876068 TCGCGATTAATTTAATCCTGGATTAGT 59.124 33.333 24.06 16.35 41.10 2.24
682 753 8.169268 GTCGCGATTAATTTAATCCTGGATTAG 58.831 37.037 24.06 13.89 41.10 1.73
683 754 7.658167 TGTCGCGATTAATTTAATCCTGGATTA 59.342 33.333 22.21 22.21 41.10 1.75
684 755 6.485313 TGTCGCGATTAATTTAATCCTGGATT 59.515 34.615 24.25 24.25 41.10 3.01
685 756 5.995282 TGTCGCGATTAATTTAATCCTGGAT 59.005 36.000 14.06 2.57 41.10 3.41
686 757 5.361427 TGTCGCGATTAATTTAATCCTGGA 58.639 37.500 14.06 0.00 41.10 3.86
687 758 5.666969 TGTCGCGATTAATTTAATCCTGG 57.333 39.130 14.06 10.95 41.10 4.45
688 759 5.050091 AGCTGTCGCGATTAATTTAATCCTG 60.050 40.000 14.06 13.23 41.10 3.86
689 760 5.057149 AGCTGTCGCGATTAATTTAATCCT 58.943 37.500 14.06 8.86 41.10 3.24
690 761 5.344207 AGCTGTCGCGATTAATTTAATCC 57.656 39.130 14.06 12.61 41.10 3.01
691 762 6.905076 TGAAAGCTGTCGCGATTAATTTAATC 59.095 34.615 14.06 16.07 42.32 1.75
692 763 6.781138 TGAAAGCTGTCGCGATTAATTTAAT 58.219 32.000 14.06 1.25 42.32 1.40
693 764 6.171932 TGAAAGCTGTCGCGATTAATTTAA 57.828 33.333 14.06 2.39 42.32 1.52
694 765 5.788055 TGAAAGCTGTCGCGATTAATTTA 57.212 34.783 14.06 0.00 42.32 1.40
695 766 4.678509 TGAAAGCTGTCGCGATTAATTT 57.321 36.364 14.06 11.91 42.32 1.82
696 767 4.678509 TTGAAAGCTGTCGCGATTAATT 57.321 36.364 14.06 4.33 42.32 1.40
697 768 4.083537 TGTTTGAAAGCTGTCGCGATTAAT 60.084 37.500 14.06 0.00 42.32 1.40
698 769 3.248841 TGTTTGAAAGCTGTCGCGATTAA 59.751 39.130 14.06 0.00 42.32 1.40
699 770 2.803386 TGTTTGAAAGCTGTCGCGATTA 59.197 40.909 14.06 3.63 42.32 1.75
700 771 1.601903 TGTTTGAAAGCTGTCGCGATT 59.398 42.857 14.06 0.56 42.32 3.34
701 772 1.195448 CTGTTTGAAAGCTGTCGCGAT 59.805 47.619 14.06 0.00 42.32 4.58
702 773 0.581529 CTGTTTGAAAGCTGTCGCGA 59.418 50.000 3.71 3.71 42.32 5.87
703 774 0.581529 TCTGTTTGAAAGCTGTCGCG 59.418 50.000 0.00 0.00 42.32 5.87
704 775 1.867233 TCTCTGTTTGAAAGCTGTCGC 59.133 47.619 0.00 0.00 0.00 5.19
705 776 3.059325 CCTTCTCTGTTTGAAAGCTGTCG 60.059 47.826 0.00 0.00 0.00 4.35
706 777 4.130118 TCCTTCTCTGTTTGAAAGCTGTC 58.870 43.478 0.00 0.00 0.00 3.51
707 778 4.156455 TCCTTCTCTGTTTGAAAGCTGT 57.844 40.909 0.00 0.00 0.00 4.40
726 797 9.563898 CACCCTTTAATAATTCGTTTTAGTTCC 57.436 33.333 0.00 0.00 0.00 3.62
752 854 2.014068 GCTGTATGAGGTTCACAGGCC 61.014 57.143 0.00 0.00 40.03 5.19
760 862 1.264749 TGGAGCGGCTGTATGAGGTT 61.265 55.000 7.50 0.00 0.00 3.50
761 863 1.680522 CTGGAGCGGCTGTATGAGGT 61.681 60.000 7.50 0.00 0.00 3.85
768 870 3.775654 GCTACCTGGAGCGGCTGT 61.776 66.667 7.50 0.82 31.57 4.40
823 942 0.179148 TGCGATGCAGTGTACTACGG 60.179 55.000 0.00 0.00 33.32 4.02
831 950 0.800631 ACAGATGTTGCGATGCAGTG 59.199 50.000 0.00 0.00 40.61 3.66
833 952 2.030091 CACTACAGATGTTGCGATGCAG 59.970 50.000 0.00 0.00 40.61 4.41
843 962 3.766051 TGAGAGATGTGCACTACAGATGT 59.234 43.478 19.41 0.39 43.80 3.06
844 963 4.142204 ACTGAGAGATGTGCACTACAGATG 60.142 45.833 19.41 4.99 43.80 2.90
882 1010 3.434167 GGCTTCTTGGGATGAATCTGCTA 60.434 47.826 0.00 0.00 0.00 3.49
888 1016 5.522641 AGTAAATGGCTTCTTGGGATGAAT 58.477 37.500 0.00 0.00 0.00 2.57
908 1036 1.618343 TGCTTGTGCAGTGAGCTAGTA 59.382 47.619 14.66 0.00 45.31 1.82
925 1053 3.560636 ACTTGTCCTTGTTGTACTGCT 57.439 42.857 0.00 0.00 0.00 4.24
926 1054 3.186613 GCTACTTGTCCTTGTTGTACTGC 59.813 47.826 0.00 0.00 0.00 4.40
927 1055 3.746492 GGCTACTTGTCCTTGTTGTACTG 59.254 47.826 0.00 0.00 0.00 2.74
928 1056 3.646637 AGGCTACTTGTCCTTGTTGTACT 59.353 43.478 0.00 0.00 0.00 2.73
929 1057 4.004196 AGGCTACTTGTCCTTGTTGTAC 57.996 45.455 0.00 0.00 0.00 2.90
930 1058 4.699925 AAGGCTACTTGTCCTTGTTGTA 57.300 40.909 0.00 0.00 40.90 2.41
931 1059 3.577805 AAGGCTACTTGTCCTTGTTGT 57.422 42.857 0.00 0.00 40.90 3.32
932 1060 3.550842 GCAAAGGCTACTTGTCCTTGTTG 60.551 47.826 1.26 0.00 41.54 3.33
933 1061 2.623416 GCAAAGGCTACTTGTCCTTGTT 59.377 45.455 1.26 0.00 41.54 2.83
934 1062 2.230660 GCAAAGGCTACTTGTCCTTGT 58.769 47.619 1.26 0.00 41.54 3.16
935 1063 2.229792 TGCAAAGGCTACTTGTCCTTG 58.770 47.619 1.26 0.00 41.54 3.61
964 1092 3.619038 GTCTGAGTACTAATGCAACTGGC 59.381 47.826 0.00 0.00 45.13 4.85
965 1093 4.081420 AGGTCTGAGTACTAATGCAACTGG 60.081 45.833 0.00 0.00 0.00 4.00
966 1094 5.078411 AGGTCTGAGTACTAATGCAACTG 57.922 43.478 0.00 0.00 0.00 3.16
968 1096 5.701290 ACAAAGGTCTGAGTACTAATGCAAC 59.299 40.000 0.00 0.00 0.00 4.17
970 1098 5.011635 TCACAAAGGTCTGAGTACTAATGCA 59.988 40.000 0.00 0.00 0.00 3.96
971 1099 5.479306 TCACAAAGGTCTGAGTACTAATGC 58.521 41.667 0.00 0.00 0.00 3.56
972 1100 6.925211 TCTCACAAAGGTCTGAGTACTAATG 58.075 40.000 0.00 0.00 36.16 1.90
973 1101 6.948886 TCTCTCACAAAGGTCTGAGTACTAAT 59.051 38.462 0.00 0.00 36.16 1.73
974 1102 6.304624 TCTCTCACAAAGGTCTGAGTACTAA 58.695 40.000 0.00 0.00 36.16 2.24
975 1103 5.877491 TCTCTCACAAAGGTCTGAGTACTA 58.123 41.667 0.00 0.00 36.16 1.82
976 1104 4.730966 TCTCTCACAAAGGTCTGAGTACT 58.269 43.478 0.00 0.00 36.16 2.73
977 1105 5.652994 ATCTCTCACAAAGGTCTGAGTAC 57.347 43.478 0.00 0.00 36.16 2.73
978 1106 6.322456 CCATATCTCTCACAAAGGTCTGAGTA 59.678 42.308 0.00 0.00 36.16 2.59
979 1107 5.128499 CCATATCTCTCACAAAGGTCTGAGT 59.872 44.000 0.00 0.00 36.16 3.41
980 1108 5.362143 TCCATATCTCTCACAAAGGTCTGAG 59.638 44.000 0.00 0.00 36.07 3.35
981 1109 5.272402 TCCATATCTCTCACAAAGGTCTGA 58.728 41.667 0.00 0.00 0.00 3.27
982 1110 5.453057 CCTCCATATCTCTCACAAAGGTCTG 60.453 48.000 0.00 0.00 0.00 3.51
983 1111 4.653341 CCTCCATATCTCTCACAAAGGTCT 59.347 45.833 0.00 0.00 0.00 3.85
984 1112 4.202305 CCCTCCATATCTCTCACAAAGGTC 60.202 50.000 0.00 0.00 0.00 3.85
993 1121 3.168035 TCTCTGCCCTCCATATCTCTC 57.832 52.381 0.00 0.00 0.00 3.20
1039 1176 2.359975 GAACCGGAACCCAGGCAG 60.360 66.667 9.46 0.00 0.00 4.85
1068 1205 4.082136 AGGTAGAAACTAACCAGCTCTTCG 60.082 45.833 0.00 0.00 38.30 3.79
1122 1259 0.663688 GCTGCCTGATGAGCTCAATG 59.336 55.000 22.50 13.18 32.14 2.82
1142 1279 5.762179 TGGATCAAACTTGTAGATGTCCT 57.238 39.130 0.00 0.00 0.00 3.85
1183 1320 3.806380 AGGAGATGTAGATGCAAGCTTG 58.194 45.455 22.44 22.44 30.71 4.01
1221 1362 8.213679 TCCCAGTCTATTCATGAGGAAAATAAG 58.786 37.037 0.00 0.00 39.39 1.73
1224 1365 6.581388 TCCCAGTCTATTCATGAGGAAAAT 57.419 37.500 0.00 0.00 39.39 1.82
1229 1370 3.906218 TCCATCCCAGTCTATTCATGAGG 59.094 47.826 0.00 0.00 0.00 3.86
1242 1383 5.619132 AAAGCCAATTAATTCCATCCCAG 57.381 39.130 0.00 0.00 0.00 4.45
1243 1384 5.486775 TGAAAAGCCAATTAATTCCATCCCA 59.513 36.000 0.00 0.00 0.00 4.37
1245 1386 6.643388 ACTGAAAAGCCAATTAATTCCATCC 58.357 36.000 0.00 0.00 0.00 3.51
1246 1387 8.552083 AAACTGAAAAGCCAATTAATTCCATC 57.448 30.769 0.00 0.00 0.00 3.51
1247 1388 8.922931 AAAACTGAAAAGCCAATTAATTCCAT 57.077 26.923 0.00 0.00 0.00 3.41
1254 1396 8.785329 AGTTTTGAAAACTGAAAAGCCAATTA 57.215 26.923 21.31 0.00 0.00 1.40
1266 1411 8.925161 TTGGAAGATACAAGTTTTGAAAACTG 57.075 30.769 22.48 17.71 0.00 3.16
1299 1451 7.345691 TGTCAAATCAGCATCCTAATTCCTAA 58.654 34.615 0.00 0.00 0.00 2.69
1364 1522 4.232188 AGATGGATGAGCACAAGATTGT 57.768 40.909 0.00 0.00 43.36 2.71
1365 1523 4.213694 GCTAGATGGATGAGCACAAGATTG 59.786 45.833 0.00 0.00 36.20 2.67
1367 1525 3.647113 AGCTAGATGGATGAGCACAAGAT 59.353 43.478 0.00 0.00 38.73 2.40
1384 1542 8.898761 TCTTTCAACTGAATCTCTACTAGCTAG 58.101 37.037 19.44 19.44 33.54 3.42
1385 1543 8.809468 TCTTTCAACTGAATCTCTACTAGCTA 57.191 34.615 0.00 0.00 33.54 3.32
1386 1544 7.710676 TCTTTCAACTGAATCTCTACTAGCT 57.289 36.000 0.00 0.00 33.54 3.32
1387 1545 8.764524 TTTCTTTCAACTGAATCTCTACTAGC 57.235 34.615 0.00 0.00 33.54 3.42
1393 1551 6.713903 TGCTGATTTCTTTCAACTGAATCTCT 59.286 34.615 0.00 0.00 33.54 3.10
1397 1555 6.645790 ACTGCTGATTTCTTTCAACTGAAT 57.354 33.333 0.00 0.00 33.54 2.57
1492 1654 2.675844 CGTTGACAAGGAACACAGTCAA 59.324 45.455 1.55 0.00 45.57 3.18
1493 1655 2.093921 TCGTTGACAAGGAACACAGTCA 60.094 45.455 8.09 0.00 39.06 3.41
1494 1656 2.284417 GTCGTTGACAAGGAACACAGTC 59.716 50.000 11.92 0.00 32.09 3.51
1495 1657 2.277084 GTCGTTGACAAGGAACACAGT 58.723 47.619 11.92 0.00 32.09 3.55
1496 1658 2.276201 TGTCGTTGACAAGGAACACAG 58.724 47.619 11.92 0.00 39.78 3.66
1497 1659 2.093921 TCTGTCGTTGACAAGGAACACA 60.094 45.455 11.92 6.46 42.26 3.72
1498 1660 2.540101 CTCTGTCGTTGACAAGGAACAC 59.460 50.000 11.92 2.26 42.26 3.32
1507 1670 1.989165 CTAGCAAGCTCTGTCGTTGAC 59.011 52.381 0.00 0.00 0.00 3.18
1525 1688 0.605083 CTGTCTCACTGCTGGTGCTA 59.395 55.000 5.70 0.00 44.98 3.49
1532 1695 1.889829 GTACCACTCTGTCTCACTGCT 59.110 52.381 0.00 0.00 0.00 4.24
1585 1748 2.978010 CGGTTTGGCCTCGTGCTT 60.978 61.111 3.32 0.00 40.92 3.91
1589 1752 4.324991 GACCCGGTTTGGCCTCGT 62.325 66.667 3.32 0.00 35.87 4.18
1613 1776 0.178990 GTGGCTTTCCAGAACCCAGT 60.179 55.000 0.47 0.00 44.48 4.00
1717 1880 0.811281 CGGTTTTGATCCCTCTTGCC 59.189 55.000 0.00 0.00 0.00 4.52
1898 6453 1.673920 GAGTCCTGTTTTCGGCAACAA 59.326 47.619 2.56 0.00 36.22 2.83
1931 6486 6.017934 TCGAACTGGTCTTCTTGAAAATTCTG 60.018 38.462 0.00 0.00 0.00 3.02
1934 6489 6.294176 CCATCGAACTGGTCTTCTTGAAAATT 60.294 38.462 0.00 0.00 0.00 1.82
1937 6492 4.065088 CCATCGAACTGGTCTTCTTGAAA 58.935 43.478 0.00 0.00 0.00 2.69
2010 6565 4.502962 GAGAGGAGATGTTGTTCTTCAGG 58.497 47.826 0.00 0.00 0.00 3.86
2015 6570 1.205893 GCGGAGAGGAGATGTTGTTCT 59.794 52.381 0.00 0.00 0.00 3.01
2016 6571 1.646189 GCGGAGAGGAGATGTTGTTC 58.354 55.000 0.00 0.00 0.00 3.18
2017 6572 0.250513 GGCGGAGAGGAGATGTTGTT 59.749 55.000 0.00 0.00 0.00 2.83
2018 6573 0.904865 TGGCGGAGAGGAGATGTTGT 60.905 55.000 0.00 0.00 0.00 3.32
2022 6577 1.301558 GCATGGCGGAGAGGAGATG 60.302 63.158 0.00 0.00 0.00 2.90
2028 6583 3.197790 CGGTTGCATGGCGGAGAG 61.198 66.667 0.00 0.00 0.00 3.20
2102 6657 3.833650 TGAAATGATTTGATGGTGCCACT 59.166 39.130 0.00 0.00 0.00 4.00
2104 6659 4.466726 TGATGAAATGATTTGATGGTGCCA 59.533 37.500 0.00 0.00 0.00 4.92
2129 6771 3.743521 CTGAGATGGACCACAGTTGAAA 58.256 45.455 0.00 0.00 0.00 2.69
2149 6791 0.402121 GGGACCTTTGAGGACTTGCT 59.598 55.000 0.07 0.00 37.67 3.91
2159 6801 1.753073 GGCAAGATGATGGGACCTTTG 59.247 52.381 0.00 0.00 0.00 2.77
2202 6844 3.058160 AGTGCGCATGGTCTTGCC 61.058 61.111 15.91 0.00 39.52 4.52
2203 6845 2.177531 CAGTGCGCATGGTCTTGC 59.822 61.111 15.91 0.00 39.29 4.01
2204 6846 1.208358 CACAGTGCGCATGGTCTTG 59.792 57.895 15.91 8.32 0.00 3.02
2208 6850 4.953010 TGGCACAGTGCGCATGGT 62.953 61.111 15.91 12.73 46.21 3.55
2221 6866 2.731691 GAAGAAGAGCGGTGGTGGCA 62.732 60.000 0.00 0.00 0.00 4.92
2222 6867 2.032681 AAGAAGAGCGGTGGTGGC 59.967 61.111 0.00 0.00 0.00 5.01
2223 6868 1.738099 CGAAGAAGAGCGGTGGTGG 60.738 63.158 0.00 0.00 0.00 4.61
2249 6894 2.282674 TGCTCAGGCTGCCCAAAG 60.283 61.111 16.57 11.43 39.59 2.77
2271 6919 2.508526 AGAACCAGTCACAAATCCAGC 58.491 47.619 0.00 0.00 0.00 4.85
2296 6947 3.633525 GCTCATGCTGGAATTTACATCCA 59.366 43.478 0.00 0.00 44.58 3.41
2297 6948 4.234530 GCTCATGCTGGAATTTACATCC 57.765 45.455 0.00 0.00 37.48 3.51
2350 7001 2.156098 TGTTCCTGAAATTACCGCCAC 58.844 47.619 0.00 0.00 0.00 5.01
2356 7007 5.710099 TCCCACTCATTGTTCCTGAAATTAC 59.290 40.000 0.00 0.00 0.00 1.89
2359 7010 4.387026 TCCCACTCATTGTTCCTGAAAT 57.613 40.909 0.00 0.00 0.00 2.17
2381 7035 0.618458 AGTCGAGTCTCTCTGGAGCT 59.382 55.000 0.00 0.00 39.31 4.09
2387 7047 2.818751 ATGGGAAGTCGAGTCTCTCT 57.181 50.000 0.00 0.00 0.00 3.10
2389 7049 1.746220 CGAATGGGAAGTCGAGTCTCT 59.254 52.381 0.00 0.00 39.64 3.10
2397 7057 5.334724 TCTACTAAACCGAATGGGAAGTC 57.665 43.478 0.00 0.00 40.75 3.01
2416 7076 6.197903 TCCCAGTCATCTGAAGAATCTTCTA 58.802 40.000 21.89 11.76 43.76 2.10
2419 7079 4.782156 ACTCCCAGTCATCTGAAGAATCTT 59.218 41.667 0.00 0.00 43.76 2.40
2423 7083 2.027745 GCACTCCCAGTCATCTGAAGAA 60.028 50.000 0.00 0.00 43.76 2.52
2499 7159 0.034616 GGCAGGCTAGGCATCTAGTG 59.965 60.000 19.70 7.81 43.68 2.74
2507 7167 1.147153 CTTGTAGGGCAGGCTAGGC 59.853 63.158 8.55 8.55 0.00 3.93
2521 7185 0.179018 GCACACCTTCCACTCCTTGT 60.179 55.000 0.00 0.00 0.00 3.16
2524 7188 2.743718 CGCACACCTTCCACTCCT 59.256 61.111 0.00 0.00 0.00 3.69
2525 7189 3.050275 GCGCACACCTTCCACTCC 61.050 66.667 0.30 0.00 0.00 3.85
2536 7200 1.672030 CAGATGAAGGTGGCGCACA 60.672 57.895 10.83 1.22 35.86 4.57
2537 7201 1.639298 GACAGATGAAGGTGGCGCAC 61.639 60.000 10.83 5.50 0.00 5.34
2538 7202 1.375908 GACAGATGAAGGTGGCGCA 60.376 57.895 10.83 0.00 0.00 6.09
2539 7203 1.364626 CTGACAGATGAAGGTGGCGC 61.365 60.000 0.00 0.00 0.00 6.53
2540 7204 1.364626 GCTGACAGATGAAGGTGGCG 61.365 60.000 6.65 0.00 0.00 5.69
2541 7205 0.321919 TGCTGACAGATGAAGGTGGC 60.322 55.000 6.65 0.00 0.00 5.01
2542 7206 2.414994 ATGCTGACAGATGAAGGTGG 57.585 50.000 6.65 0.00 0.00 4.61
2543 7207 4.008330 AGAAATGCTGACAGATGAAGGTG 58.992 43.478 6.65 0.00 0.00 4.00
2544 7208 4.298103 AGAAATGCTGACAGATGAAGGT 57.702 40.909 6.65 0.00 0.00 3.50
2553 7217 7.506590 GCCTTTGCTAACAGAAATGCTGACA 62.507 44.000 0.00 0.00 39.82 3.58
2554 7218 5.142617 GCCTTTGCTAACAGAAATGCTGAC 61.143 45.833 0.00 0.00 39.82 3.51
2578 7255 6.983890 CCAAAACTAAACAAACAATAGCTGGT 59.016 34.615 0.00 0.00 0.00 4.00
2585 7262 9.480053 CATCTGATCCAAAACTAAACAAACAAT 57.520 29.630 0.00 0.00 0.00 2.71
2652 7329 9.760926 ATGTATATATCCTTCTCTCTGTTAGCA 57.239 33.333 0.00 0.00 0.00 3.49
2724 16231 4.287067 ACTCTCCACTCAATGTACACCATT 59.713 41.667 0.00 0.00 44.73 3.16
2867 16374 5.389520 TGATGGTGGTGATGAAAGGTTTAA 58.610 37.500 0.00 0.00 0.00 1.52
2936 16451 2.373502 AGCCACAAAGTAGAGCTCCTTT 59.626 45.455 10.93 10.98 0.00 3.11
3044 16560 8.094548 TCTTGTACTCATAAGTTGCAACTATGT 58.905 33.333 31.31 23.77 38.57 2.29
3097 16613 9.506018 TGAGCAAATAAAAGCTAGATATATGCA 57.494 29.630 0.00 0.00 42.04 3.96
3247 16764 5.444877 CGTTGAAAGCAATTATGTGGCATTG 60.445 40.000 0.00 0.00 36.22 2.82
3248 16765 4.626604 CGTTGAAAGCAATTATGTGGCATT 59.373 37.500 0.00 0.00 36.22 3.56
3250 16767 3.254411 TCGTTGAAAGCAATTATGTGGCA 59.746 39.130 0.00 0.00 36.22 4.92
3251 16768 3.608073 GTCGTTGAAAGCAATTATGTGGC 59.392 43.478 0.00 0.00 36.22 5.01
3253 16770 4.793071 TGGTCGTTGAAAGCAATTATGTG 58.207 39.130 0.00 0.00 36.22 3.21
3254 16771 5.446143 TTGGTCGTTGAAAGCAATTATGT 57.554 34.783 0.00 0.00 36.22 2.29
3255 16772 6.949578 ATTTGGTCGTTGAAAGCAATTATG 57.050 33.333 0.00 0.00 36.22 1.90
3257 16774 8.519526 AGATAATTTGGTCGTTGAAAGCAATTA 58.480 29.630 0.00 0.00 36.22 1.40
3400 17000 6.774656 ACTCCAAATCATGAACTCTGAAGTTT 59.225 34.615 0.00 0.00 45.80 2.66
3481 17081 4.589216 TCCACAAGCTTGAAATTCCTTG 57.411 40.909 32.50 16.67 40.26 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.