Multiple sequence alignment - TraesCS2A01G063100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G063100 chr2A 100.000 2927 0 0 1 2927 27941739 27938813 0.000000e+00 5406
1 TraesCS2A01G063100 chr2A 83.955 1234 104 51 838 2018 27902560 27901368 0.000000e+00 1096
2 TraesCS2A01G063100 chr2A 83.942 1233 105 50 838 2018 27855881 27854690 0.000000e+00 1094
3 TraesCS2A01G063100 chr2A 83.306 1234 102 52 838 2018 27811585 27810403 0.000000e+00 1042
4 TraesCS2A01G063100 chr2A 84.757 1089 103 36 826 1896 27748128 27747085 0.000000e+00 1033
5 TraesCS2A01G063100 chr2A 85.987 942 93 22 824 1738 27912823 27911894 0.000000e+00 972
6 TraesCS2A01G063100 chr2A 83.624 916 102 26 943 1835 27620501 27619611 0.000000e+00 817
7 TraesCS2A01G063100 chr2A 83.415 814 106 18 2131 2927 27881911 27881110 0.000000e+00 728
8 TraesCS2A01G063100 chr2A 82.801 814 111 18 2131 2927 27835639 27834838 0.000000e+00 701
9 TraesCS2A01G063100 chr2A 86.189 391 30 10 826 1210 27638571 27638943 4.540000e-108 401
10 TraesCS2A01G063100 chr2A 85.934 391 31 10 826 1210 27628247 27628619 2.110000e-106 396
11 TraesCS2A01G063100 chr2A 97.037 135 4 0 236 370 495825460 495825594 8.160000e-56 228
12 TraesCS2A01G063100 chr2A 94.690 113 5 1 2017 2128 471775598 471775486 1.080000e-39 174
13 TraesCS2A01G063100 chr2A 93.636 110 7 0 2020 2129 78333707 78333816 6.490000e-37 165
14 TraesCS2A01G063100 chr2A 91.736 121 3 4 1902 2022 27746950 27746837 8.390000e-36 161
15 TraesCS2A01G063100 chr2B 86.125 1600 127 47 484 2023 41125592 41124028 0.000000e+00 1637
16 TraesCS2A01G063100 chr2B 85.655 1213 122 27 824 2018 41115029 41113851 0.000000e+00 1229
17 TraesCS2A01G063100 chr2B 91.677 817 49 8 2129 2927 41118778 41117963 0.000000e+00 1114
18 TraesCS2A01G063100 chr2B 90.519 770 62 4 1256 2022 41119541 41118780 0.000000e+00 1007
19 TraesCS2A01G063100 chr2B 86.242 596 71 5 1289 1876 41070776 41071368 1.140000e-178 636
20 TraesCS2A01G063100 chr2B 85.012 427 48 9 2502 2927 41123222 41122811 1.250000e-113 420
21 TraesCS2A01G063100 chr2B 84.264 394 32 11 827 1219 41120023 41119659 9.980000e-95 357
22 TraesCS2A01G063100 chr2B 90.431 209 12 3 1 205 41125958 41125754 4.810000e-68 268
23 TraesCS2A01G063100 chr2B 80.919 283 35 8 2140 2421 41123721 41123457 3.820000e-49 206
24 TraesCS2A01G063100 chr2B 100.000 67 0 0 405 471 799062729 799062795 1.100000e-24 124
25 TraesCS2A01G063100 chr2B 98.571 70 0 1 406 474 198759469 198759538 3.960000e-24 122
26 TraesCS2A01G063100 chr2B 91.566 83 4 2 406 485 615890805 615890887 8.570000e-21 111
27 TraesCS2A01G063100 chr2D 85.725 1331 113 45 651 1956 25332945 25331667 0.000000e+00 1334
28 TraesCS2A01G063100 chr2D 87.150 1214 104 34 827 2022 25324644 25323465 0.000000e+00 1330
29 TraesCS2A01G063100 chr2D 84.483 986 100 25 826 1797 25319748 25318802 0.000000e+00 924
30 TraesCS2A01G063100 chr2D 94.545 110 6 0 2019 2128 592790316 592790425 1.390000e-38 171
31 TraesCS2A01G063100 chr2D 93.671 79 3 1 409 485 449951954 449951876 1.840000e-22 117
32 TraesCS2A01G063100 chrUn 83.164 986 99 33 826 1797 24809019 24808087 0.000000e+00 839
33 TraesCS2A01G063100 chrUn 82.759 841 101 24 1052 1875 162951247 162952060 0.000000e+00 710
34 TraesCS2A01G063100 chrUn 86.395 588 68 8 1289 1869 364950870 364950288 1.480000e-177 632
35 TraesCS2A01G063100 chrUn 81.818 385 33 17 829 1210 24837289 24836939 3.690000e-74 289
36 TraesCS2A01G063100 chrUn 81.818 385 33 17 829 1210 212870057 212869707 3.690000e-74 289
37 TraesCS2A01G063100 chrUn 95.238 105 5 0 2024 2128 30406060 30405956 1.800000e-37 167
38 TraesCS2A01G063100 chrUn 94.444 108 6 0 2021 2128 352766984 352766877 1.800000e-37 167
39 TraesCS2A01G063100 chrUn 93.750 112 6 1 2022 2133 362393449 362393339 1.800000e-37 167
40 TraesCS2A01G063100 chrUn 92.793 111 8 0 2019 2129 12279493 12279383 8.390000e-36 161
41 TraesCS2A01G063100 chrUn 92.857 112 7 1 2015 2126 271105610 271105720 8.390000e-36 161
42 TraesCS2A01G063100 chrUn 92.857 112 7 1 2015 2126 314057814 314057704 8.390000e-36 161
43 TraesCS2A01G063100 chrUn 91.228 114 10 0 2015 2128 98087434 98087547 3.910000e-34 156
44 TraesCS2A01G063100 chrUn 91.892 111 9 0 2021 2131 218382242 218382132 3.910000e-34 156
45 TraesCS2A01G063100 chrUn 91.892 111 9 0 2021 2131 218399790 218399680 3.910000e-34 156
46 TraesCS2A01G063100 chr7B 97.761 134 3 0 237 370 244295801 244295934 6.310000e-57 231
47 TraesCS2A01G063100 chr7B 97.059 136 4 0 235 370 645406198 645406063 2.270000e-56 230
48 TraesCS2A01G063100 chr7B 96.377 138 5 0 233 370 500023186 500023049 8.160000e-56 228
49 TraesCS2A01G063100 chr7B 96.350 137 5 0 234 370 534818573 534818709 2.940000e-55 226
50 TraesCS2A01G063100 chr7B 91.765 85 4 1 406 487 745042385 745042301 6.630000e-22 115
51 TraesCS2A01G063100 chr1B 97.761 134 3 0 237 370 169958251 169958118 6.310000e-57 231
52 TraesCS2A01G063100 chr6B 95.683 139 6 0 232 370 232733038 232732900 1.060000e-54 224
53 TraesCS2A01G063100 chr6B 91.566 83 5 2 405 485 254367522 254367440 2.380000e-21 113
54 TraesCS2A01G063100 chr3B 95.683 139 6 0 232 370 637665029 637665167 1.060000e-54 224
55 TraesCS2A01G063100 chr3B 94.444 144 7 1 228 370 658491665 658491808 1.370000e-53 220
56 TraesCS2A01G063100 chr4D 92.126 127 8 2 2004 2129 481177569 481177444 8.340000e-41 178
57 TraesCS2A01G063100 chr4D 95.327 107 5 0 2022 2128 80469914 80470020 1.390000e-38 171
58 TraesCS2A01G063100 chr3D 95.455 110 5 0 2019 2128 433565992 433566101 3.000000e-40 176
59 TraesCS2A01G063100 chr3D 93.750 112 7 0 2019 2130 435646740 435646851 5.020000e-38 169
60 TraesCS2A01G063100 chr3D 93.043 115 8 0 2014 2128 606889401 606889287 5.020000e-38 169
61 TraesCS2A01G063100 chr1A 93.277 119 8 0 2019 2137 376145840 376145958 3.000000e-40 176
62 TraesCS2A01G063100 chr1A 95.455 110 5 0 2019 2128 544391265 544391374 3.000000e-40 176
63 TraesCS2A01G063100 chr7A 94.595 111 6 0 2022 2132 535535480 535535370 3.880000e-39 172
64 TraesCS2A01G063100 chr6D 94.643 112 5 1 2022 2133 185186165 185186055 3.880000e-39 172
65 TraesCS2A01G063100 chr6D 93.805 113 6 1 2022 2134 468640999 468640888 5.020000e-38 169
66 TraesCS2A01G063100 chr6D 94.444 108 6 0 2022 2129 200871781 200871674 1.800000e-37 167
67 TraesCS2A01G063100 chr6D 92.373 118 8 1 2022 2139 418960810 418960926 1.800000e-37 167
68 TraesCS2A01G063100 chr6D 90.244 123 10 2 2022 2142 298921090 298920968 3.020000e-35 159
69 TraesCS2A01G063100 chr6A 95.370 108 5 0 2022 2129 477910878 477910771 3.880000e-39 172
70 TraesCS2A01G063100 chr6A 92.373 118 8 1 2019 2136 13437172 13437288 1.800000e-37 167
71 TraesCS2A01G063100 chr4A 93.860 114 6 1 2020 2133 274942741 274942629 1.390000e-38 171
72 TraesCS2A01G063100 chr1D 93.750 112 7 0 2017 2128 247521069 247520958 5.020000e-38 169
73 TraesCS2A01G063100 chr1D 92.982 114 7 1 2015 2128 227655305 227655417 6.490000e-37 165
74 TraesCS2A01G063100 chr1D 94.393 107 6 0 2022 2128 447959571 447959465 6.490000e-37 165
75 TraesCS2A01G063100 chr1D 90.833 120 10 1 2009 2128 222916442 222916560 3.020000e-35 159
76 TraesCS2A01G063100 chr1D 95.000 80 1 1 409 485 132259520 132259441 3.960000e-24 122
77 TraesCS2A01G063100 chr5D 93.590 78 5 0 409 486 281171290 281171213 1.840000e-22 117
78 TraesCS2A01G063100 chr5A 91.667 84 4 1 406 486 439182179 439182262 2.380000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G063100 chr2A 27938813 27941739 2926 True 5406.00 5406 100.00000 1 2927 1 chr2A.!!$R8 2926
1 TraesCS2A01G063100 chr2A 27901368 27902560 1192 True 1096.00 1096 83.95500 838 2018 1 chr2A.!!$R6 1180
2 TraesCS2A01G063100 chr2A 27854690 27855881 1191 True 1094.00 1094 83.94200 838 2018 1 chr2A.!!$R4 1180
3 TraesCS2A01G063100 chr2A 27810403 27811585 1182 True 1042.00 1042 83.30600 838 2018 1 chr2A.!!$R2 1180
4 TraesCS2A01G063100 chr2A 27911894 27912823 929 True 972.00 972 85.98700 824 1738 1 chr2A.!!$R7 914
5 TraesCS2A01G063100 chr2A 27619611 27620501 890 True 817.00 817 83.62400 943 1835 1 chr2A.!!$R1 892
6 TraesCS2A01G063100 chr2A 27881110 27881911 801 True 728.00 728 83.41500 2131 2927 1 chr2A.!!$R5 796
7 TraesCS2A01G063100 chr2A 27834838 27835639 801 True 701.00 701 82.80100 2131 2927 1 chr2A.!!$R3 796
8 TraesCS2A01G063100 chr2A 27746837 27748128 1291 True 597.00 1033 88.24650 826 2022 2 chr2A.!!$R10 1196
9 TraesCS2A01G063100 chr2B 41113851 41125958 12107 True 779.75 1637 86.82525 1 2927 8 chr2B.!!$R1 2926
10 TraesCS2A01G063100 chr2B 41070776 41071368 592 False 636.00 636 86.24200 1289 1876 1 chr2B.!!$F1 587
11 TraesCS2A01G063100 chr2D 25331667 25332945 1278 True 1334.00 1334 85.72500 651 1956 1 chr2D.!!$R1 1305
12 TraesCS2A01G063100 chr2D 25318802 25324644 5842 True 1127.00 1330 85.81650 826 2022 2 chr2D.!!$R3 1196
13 TraesCS2A01G063100 chrUn 24808087 24809019 932 True 839.00 839 83.16400 826 1797 1 chrUn.!!$R2 971
14 TraesCS2A01G063100 chrUn 162951247 162952060 813 False 710.00 710 82.75900 1052 1875 1 chrUn.!!$F2 823
15 TraesCS2A01G063100 chrUn 364950288 364950870 582 True 632.00 632 86.39500 1289 1869 1 chrUn.!!$R11 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 718 0.107508 ATCCATCCAACAGCAGTCCG 60.108 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 7786 0.256752 TCATACTCCCTCCGTTCCGA 59.743 55.0 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.016153 TGTTATGGGTTAAGTCTCAGTCAAT 57.984 36.000 0.00 0.00 0.00 2.57
62 63 1.199097 CCAAACCCAATACTCACGCAC 59.801 52.381 0.00 0.00 0.00 5.34
63 64 2.151202 CAAACCCAATACTCACGCACT 58.849 47.619 0.00 0.00 0.00 4.40
64 65 2.552315 CAAACCCAATACTCACGCACTT 59.448 45.455 0.00 0.00 0.00 3.16
65 66 1.808411 ACCCAATACTCACGCACTTG 58.192 50.000 0.00 0.00 0.00 3.16
78 79 7.199766 ACTCACGCACTTGAATAAAATTTTCA 58.800 30.769 6.72 0.00 0.00 2.69
80 81 7.836512 TCACGCACTTGAATAAAATTTTCAAC 58.163 30.769 6.72 0.93 37.97 3.18
101 102 8.984891 TCAACATGTGGAAATAGCTATTTTTG 57.015 30.769 27.96 24.02 36.13 2.44
129 134 1.795768 AGAAGAGACATTTTCGCGCA 58.204 45.000 8.75 0.00 0.00 6.09
156 161 5.061187 GCCCAAATCCAAATTTACGTTTACG 59.939 40.000 0.00 0.00 37.94 3.18
206 341 2.711542 ACCGAAACTCATGGGTGATTC 58.288 47.619 0.00 0.00 32.98 2.52
211 346 4.272489 GAAACTCATGGGTGATTCCATCA 58.728 43.478 0.00 0.00 45.08 3.07
219 354 2.643551 GGTGATTCCATCAACACCGAT 58.356 47.619 0.00 0.00 46.21 4.18
227 362 0.740868 ATCAACACCGATGCTCCACG 60.741 55.000 0.00 0.00 0.00 4.94
232 367 3.842923 CCGATGCTCCACGGCTCT 61.843 66.667 0.00 0.00 42.55 4.09
236 371 0.461961 GATGCTCCACGGCTCTAGTT 59.538 55.000 0.00 0.00 0.00 2.24
237 372 1.681793 GATGCTCCACGGCTCTAGTTA 59.318 52.381 0.00 0.00 0.00 2.24
238 373 0.815734 TGCTCCACGGCTCTAGTTAC 59.184 55.000 0.00 0.00 0.00 2.50
239 374 1.104630 GCTCCACGGCTCTAGTTACT 58.895 55.000 0.00 0.00 0.00 2.24
240 375 1.065851 GCTCCACGGCTCTAGTTACTC 59.934 57.143 0.00 0.00 0.00 2.59
241 376 1.677052 CTCCACGGCTCTAGTTACTCC 59.323 57.143 0.00 0.00 0.00 3.85
242 377 0.745468 CCACGGCTCTAGTTACTCCC 59.255 60.000 0.00 0.00 0.00 4.30
243 378 1.685491 CCACGGCTCTAGTTACTCCCT 60.685 57.143 0.00 0.00 0.00 4.20
244 379 1.677052 CACGGCTCTAGTTACTCCCTC 59.323 57.143 0.00 0.00 0.00 4.30
245 380 1.320507 CGGCTCTAGTTACTCCCTCC 58.679 60.000 0.00 0.00 0.00 4.30
246 381 1.320507 GGCTCTAGTTACTCCCTCCG 58.679 60.000 0.00 0.00 0.00 4.63
247 382 1.409942 GGCTCTAGTTACTCCCTCCGT 60.410 57.143 0.00 0.00 0.00 4.69
248 383 2.377073 GCTCTAGTTACTCCCTCCGTT 58.623 52.381 0.00 0.00 0.00 4.44
249 384 2.358582 GCTCTAGTTACTCCCTCCGTTC 59.641 54.545 0.00 0.00 0.00 3.95
250 385 2.950975 CTCTAGTTACTCCCTCCGTTCC 59.049 54.545 0.00 0.00 0.00 3.62
251 386 2.030371 CTAGTTACTCCCTCCGTTCCC 58.970 57.143 0.00 0.00 0.00 3.97
252 387 0.115745 AGTTACTCCCTCCGTTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
253 388 0.978907 GTTACTCCCTCCGTTCCCAA 59.021 55.000 0.00 0.00 0.00 4.12
254 389 1.348696 GTTACTCCCTCCGTTCCCAAA 59.651 52.381 0.00 0.00 0.00 3.28
255 390 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
256 391 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
257 392 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
258 393 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
259 394 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
260 395 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
261 396 3.010808 TCCCTCCGTTCCCAAATAATTGT 59.989 43.478 0.00 0.00 34.60 2.71
262 397 3.380320 CCCTCCGTTCCCAAATAATTGTC 59.620 47.826 0.00 0.00 34.60 3.18
263 398 4.270008 CCTCCGTTCCCAAATAATTGTCT 58.730 43.478 0.00 0.00 34.60 3.41
264 399 4.705023 CCTCCGTTCCCAAATAATTGTCTT 59.295 41.667 0.00 0.00 34.60 3.01
265 400 5.185056 CCTCCGTTCCCAAATAATTGTCTTT 59.815 40.000 0.00 0.00 34.60 2.52
266 401 6.262193 TCCGTTCCCAAATAATTGTCTTTC 57.738 37.500 0.00 0.00 34.60 2.62
267 402 6.007703 TCCGTTCCCAAATAATTGTCTTTCT 58.992 36.000 0.00 0.00 34.60 2.52
268 403 7.169591 TCCGTTCCCAAATAATTGTCTTTCTA 58.830 34.615 0.00 0.00 34.60 2.10
269 404 7.335924 TCCGTTCCCAAATAATTGTCTTTCTAG 59.664 37.037 0.00 0.00 34.60 2.43
270 405 7.335924 CCGTTCCCAAATAATTGTCTTTCTAGA 59.664 37.037 0.00 0.00 34.60 2.43
271 406 8.391106 CGTTCCCAAATAATTGTCTTTCTAGAG 58.609 37.037 0.00 0.00 34.60 2.43
272 407 9.449719 GTTCCCAAATAATTGTCTTTCTAGAGA 57.550 33.333 0.00 0.00 34.60 3.10
283 418 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
284 419 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
285 420 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
286 421 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
287 422 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
288 423 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
289 424 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
290 425 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
291 426 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
293 428 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
294 429 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
295 430 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
296 431 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
297 432 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
298 433 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
299 434 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
300 435 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
301 436 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
302 437 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
303 438 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
304 439 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
305 440 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
306 441 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
307 442 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
308 443 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
309 444 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
310 445 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
311 446 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
312 447 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
313 448 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
314 449 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
315 450 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
316 451 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
317 452 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
318 453 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
319 454 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
320 455 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
321 456 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
342 477 9.302345 ACTCTAAAACATGTCTACATACATTCG 57.698 33.333 0.00 0.00 38.01 3.34
343 478 9.302345 CTCTAAAACATGTCTACATACATTCGT 57.698 33.333 0.00 0.00 38.01 3.85
362 497 9.261180 ACATTCGTATATTGTAGTCCATTTGAG 57.739 33.333 0.00 0.00 0.00 3.02
363 498 9.476202 CATTCGTATATTGTAGTCCATTTGAGA 57.524 33.333 0.00 0.00 0.00 3.27
365 500 9.476202 TTCGTATATTGTAGTCCATTTGAGATG 57.524 33.333 0.00 0.00 0.00 2.90
366 501 8.088365 TCGTATATTGTAGTCCATTTGAGATGG 58.912 37.037 0.00 0.00 40.48 3.51
367 502 7.148573 CGTATATTGTAGTCCATTTGAGATGGC 60.149 40.741 0.00 0.00 39.01 4.40
368 503 4.574674 TTGTAGTCCATTTGAGATGGCT 57.425 40.909 0.00 1.24 39.01 4.75
369 504 5.692115 TTGTAGTCCATTTGAGATGGCTA 57.308 39.130 0.00 0.33 39.01 3.93
370 505 5.023533 TGTAGTCCATTTGAGATGGCTAC 57.976 43.478 19.80 19.80 42.43 3.58
371 506 4.469586 TGTAGTCCATTTGAGATGGCTACA 59.530 41.667 22.76 22.76 45.35 2.74
372 507 4.785346 AGTCCATTTGAGATGGCTACAT 57.215 40.909 0.00 0.00 40.85 2.29
373 508 5.894298 AGTCCATTTGAGATGGCTACATA 57.106 39.130 0.00 0.00 37.47 2.29
374 509 5.615289 AGTCCATTTGAGATGGCTACATAC 58.385 41.667 0.00 0.00 37.47 2.39
375 510 5.130975 AGTCCATTTGAGATGGCTACATACA 59.869 40.000 0.00 0.00 37.47 2.29
376 511 6.000219 GTCCATTTGAGATGGCTACATACAT 59.000 40.000 0.00 0.00 37.47 2.29
377 512 5.999600 TCCATTTGAGATGGCTACATACATG 59.000 40.000 0.00 0.00 37.47 3.21
378 513 5.766670 CCATTTGAGATGGCTACATACATGT 59.233 40.000 2.69 2.69 37.47 3.21
379 514 6.072838 CCATTTGAGATGGCTACATACATGTC 60.073 42.308 0.00 0.00 37.47 3.06
380 515 5.876651 TTGAGATGGCTACATACATGTCT 57.123 39.130 0.00 0.00 41.97 3.41
381 516 6.976934 TTGAGATGGCTACATACATGTCTA 57.023 37.500 0.00 0.00 41.97 2.59
382 517 6.332735 TGAGATGGCTACATACATGTCTAC 57.667 41.667 0.00 0.00 41.97 2.59
383 518 6.071320 TGAGATGGCTACATACATGTCTACT 58.929 40.000 0.00 0.00 41.97 2.57
384 519 6.207614 TGAGATGGCTACATACATGTCTACTC 59.792 42.308 0.00 0.89 41.97 2.59
385 520 6.310941 AGATGGCTACATACATGTCTACTCT 58.689 40.000 0.00 0.00 41.97 3.24
386 521 7.462590 AGATGGCTACATACATGTCTACTCTA 58.537 38.462 0.00 0.00 41.97 2.43
387 522 7.945109 AGATGGCTACATACATGTCTACTCTAA 59.055 37.037 0.00 0.00 41.97 2.10
388 523 7.891498 TGGCTACATACATGTCTACTCTAAA 57.109 36.000 0.00 0.00 41.97 1.85
389 524 8.301252 TGGCTACATACATGTCTACTCTAAAA 57.699 34.615 0.00 0.00 41.97 1.52
390 525 8.195436 TGGCTACATACATGTCTACTCTAAAAC 58.805 37.037 0.00 0.00 41.97 2.43
391 526 8.195436 GGCTACATACATGTCTACTCTAAAACA 58.805 37.037 0.00 0.00 41.97 2.83
392 527 9.751542 GCTACATACATGTCTACTCTAAAACAT 57.248 33.333 0.00 0.00 41.97 2.71
400 535 9.809096 CATGTCTACTCTAAAACATGTCTACAT 57.191 33.333 0.00 0.00 42.45 2.29
402 537 9.856488 TGTCTACTCTAAAACATGTCTACATTC 57.144 33.333 0.00 0.00 33.61 2.67
403 538 9.011407 GTCTACTCTAAAACATGTCTACATTCG 57.989 37.037 0.00 0.00 33.61 3.34
404 539 8.737175 TCTACTCTAAAACATGTCTACATTCGT 58.263 33.333 0.00 0.00 33.61 3.85
405 540 9.999009 CTACTCTAAAACATGTCTACATTCGTA 57.001 33.333 0.00 0.00 33.61 3.43
407 542 9.302345 ACTCTAAAACATGTCTACATTCGTATG 57.698 33.333 0.00 0.00 33.61 2.39
408 543 9.302345 CTCTAAAACATGTCTACATTCGTATGT 57.698 33.333 12.50 12.50 46.49 2.29
409 544 9.647797 TCTAAAACATGTCTACATTCGTATGTT 57.352 29.630 13.12 0.00 42.29 2.71
414 549 9.647797 AACATGTCTACATTCGTATGTTTTAGA 57.352 29.630 13.12 7.42 42.29 2.10
415 550 9.302345 ACATGTCTACATTCGTATGTTTTAGAG 57.698 33.333 13.12 4.47 42.29 2.43
416 551 9.302345 CATGTCTACATTCGTATGTTTTAGAGT 57.698 33.333 13.12 0.51 42.29 3.24
417 552 8.683550 TGTCTACATTCGTATGTTTTAGAGTG 57.316 34.615 13.12 0.00 42.29 3.51
418 553 8.301720 TGTCTACATTCGTATGTTTTAGAGTGT 58.698 33.333 13.12 0.00 42.29 3.55
419 554 9.778993 GTCTACATTCGTATGTTTTAGAGTGTA 57.221 33.333 13.12 0.00 42.29 2.90
420 555 9.999009 TCTACATTCGTATGTTTTAGAGTGTAG 57.001 33.333 13.12 15.90 46.24 2.74
423 558 9.871238 ACATTCGTATGTTTTAGAGTGTAGATT 57.129 29.630 1.31 0.00 42.29 2.40
426 561 8.906636 TCGTATGTTTTAGAGTGTAGATTCAC 57.093 34.615 0.00 0.00 38.46 3.18
437 572 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
438 573 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
439 574 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
440 575 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
441 576 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
442 577 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
443 578 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
444 579 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
445 580 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
446 581 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
447 582 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
448 583 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
449 584 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
450 585 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
451 586 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
452 587 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
453 588 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
454 589 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
455 590 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
456 591 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
457 592 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
458 593 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
459 594 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
460 595 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
461 596 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
462 597 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
463 598 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
464 599 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
465 600 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
466 601 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
467 602 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
468 603 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
469 604 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
470 605 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
471 606 7.659390 AGTCACTTGTTGAAATCTCTAGAAAGG 59.341 37.037 0.00 0.00 35.39 3.11
472 607 7.657761 GTCACTTGTTGAAATCTCTAGAAAGGA 59.342 37.037 0.00 0.00 35.39 3.36
473 608 8.210946 TCACTTGTTGAAATCTCTAGAAAGGAA 58.789 33.333 0.00 0.00 0.00 3.36
474 609 8.286097 CACTTGTTGAAATCTCTAGAAAGGAAC 58.714 37.037 0.00 0.00 0.00 3.62
475 610 7.171678 ACTTGTTGAAATCTCTAGAAAGGAACG 59.828 37.037 0.00 0.00 0.00 3.95
476 611 5.932303 TGTTGAAATCTCTAGAAAGGAACGG 59.068 40.000 0.00 0.00 0.00 4.44
477 612 5.995565 TGAAATCTCTAGAAAGGAACGGA 57.004 39.130 0.00 0.00 0.00 4.69
478 613 5.967088 TGAAATCTCTAGAAAGGAACGGAG 58.033 41.667 0.00 0.00 0.00 4.63
479 614 5.105310 TGAAATCTCTAGAAAGGAACGGAGG 60.105 44.000 0.00 0.00 0.00 4.30
480 615 2.736347 TCTCTAGAAAGGAACGGAGGG 58.264 52.381 0.00 0.00 0.00 4.30
481 616 2.310945 TCTCTAGAAAGGAACGGAGGGA 59.689 50.000 0.00 0.00 0.00 4.20
482 617 2.691011 CTCTAGAAAGGAACGGAGGGAG 59.309 54.545 0.00 0.00 0.00 4.30
504 639 3.360249 AGTTTACAGTAGACGTTGCGT 57.640 42.857 0.00 0.00 45.10 5.24
512 647 1.348538 TAGACGTTGCGTGAATGCGG 61.349 55.000 0.00 0.00 41.37 5.69
538 675 0.916809 GGGGTATGCTAGTGTGGGTT 59.083 55.000 0.00 0.00 0.00 4.11
581 718 0.107508 ATCCATCCAACAGCAGTCCG 60.108 55.000 0.00 0.00 0.00 4.79
590 727 1.045407 ACAGCAGTCCGTTTGGAGTA 58.955 50.000 0.00 0.00 46.62 2.59
591 728 1.270147 ACAGCAGTCCGTTTGGAGTAC 60.270 52.381 0.00 0.00 46.62 2.73
592 729 1.000955 CAGCAGTCCGTTTGGAGTACT 59.999 52.381 0.00 0.00 46.62 2.73
593 730 1.272769 AGCAGTCCGTTTGGAGTACTC 59.727 52.381 14.87 14.87 46.62 2.59
594 731 1.672145 GCAGTCCGTTTGGAGTACTCC 60.672 57.143 31.61 31.61 46.62 3.85
595 732 1.893801 CAGTCCGTTTGGAGTACTCCT 59.106 52.381 35.83 15.61 46.62 3.69
627 764 6.870971 TCCAGTTATGAACAACAAAGTACC 57.129 37.500 0.00 0.00 0.00 3.34
632 769 7.011950 CAGTTATGAACAACAAAGTACCACTCA 59.988 37.037 0.00 0.00 0.00 3.41
677 814 3.441572 GCACTTTACAGCCATTCTGATGT 59.558 43.478 0.00 0.00 45.72 3.06
745 882 0.740868 TCTAACTCACGCTGCATGCC 60.741 55.000 16.68 0.00 38.78 4.40
746 883 2.028766 CTAACTCACGCTGCATGCCG 62.029 60.000 16.68 15.02 38.78 5.69
747 884 2.779951 TAACTCACGCTGCATGCCGT 62.780 55.000 16.68 15.74 38.78 5.68
751 888 4.783621 ACGCTGCATGCCGTGGAT 62.784 61.111 23.81 4.01 38.78 3.41
754 891 1.819208 GCTGCATGCCGTGGATGTA 60.819 57.895 16.68 0.00 35.15 2.29
755 892 2.016961 CTGCATGCCGTGGATGTAC 58.983 57.895 16.68 0.00 0.00 2.90
756 893 1.765161 CTGCATGCCGTGGATGTACG 61.765 60.000 16.68 0.00 43.35 3.67
1009 1162 2.954318 CCTGTTCCATTCATCCATCCAC 59.046 50.000 0.00 0.00 0.00 4.02
1015 1172 2.156917 CATTCATCCATCCACCCATCG 58.843 52.381 0.00 0.00 0.00 3.84
1019 1176 1.348696 CATCCATCCACCCATCGATCA 59.651 52.381 0.00 0.00 0.00 2.92
1020 1177 1.051008 TCCATCCACCCATCGATCAG 58.949 55.000 0.00 0.00 0.00 2.90
1022 1179 0.395686 CATCCACCCATCGATCAGCT 59.604 55.000 0.00 0.00 0.00 4.24
1024 1181 1.040646 TCCACCCATCGATCAGCTAC 58.959 55.000 0.00 0.00 0.00 3.58
1026 1183 1.414181 CCACCCATCGATCAGCTACTT 59.586 52.381 0.00 0.00 0.00 2.24
1197 1373 0.110486 AGGCCGAGGAAGCTTTCAAA 59.890 50.000 7.68 0.00 0.00 2.69
1214 1390 6.560253 TTTCAAAGGTAAGCTAGCTTGAAG 57.440 37.500 34.98 19.69 44.95 3.02
1226 1402 2.464157 GCTTGAAGCTCAGTGGTAGT 57.536 50.000 10.44 0.00 38.45 2.73
1229 1405 3.056465 GCTTGAAGCTCAGTGGTAGTAGT 60.056 47.826 10.44 0.00 38.45 2.73
1231 1407 5.640189 TTGAAGCTCAGTGGTAGTAGTAC 57.360 43.478 0.00 0.00 0.00 2.73
1263 1471 3.738282 GTCAATGCATAGACGATGGAGAC 59.262 47.826 0.00 0.00 39.54 3.36
1284 1495 2.419297 CCAGCTCATGGTTGTCCTACTC 60.419 54.545 0.00 0.00 44.91 2.59
1285 1496 1.834263 AGCTCATGGTTGTCCTACTCC 59.166 52.381 0.00 0.00 34.23 3.85
1286 1497 1.555075 GCTCATGGTTGTCCTACTCCA 59.445 52.381 0.00 0.00 34.23 3.86
1287 1498 2.171448 GCTCATGGTTGTCCTACTCCAT 59.829 50.000 0.00 0.00 40.73 3.41
1335 1546 3.055094 AGGTGGCGATCAAGTGTAAGAAT 60.055 43.478 0.00 0.00 0.00 2.40
1336 1547 3.309954 GGTGGCGATCAAGTGTAAGAATC 59.690 47.826 0.00 0.00 0.00 2.52
1474 1699 2.897846 CCAACGCACCGTGTTCCA 60.898 61.111 0.00 0.00 39.99 3.53
1638 1872 2.301346 CACTTCCACCACAAGAAGCTT 58.699 47.619 0.00 0.00 42.67 3.74
1835 7360 3.876914 CGGCCTAGCAGTGAAATTTCATA 59.123 43.478 23.05 10.91 39.73 2.15
2026 7701 8.880991 TGTAATGAGAGGTTCCTATATACTCC 57.119 38.462 0.00 0.00 0.00 3.85
2027 7702 8.453681 TGTAATGAGAGGTTCCTATATACTCCA 58.546 37.037 0.00 0.00 0.00 3.86
2028 7703 9.482175 GTAATGAGAGGTTCCTATATACTCCAT 57.518 37.037 0.00 0.00 0.00 3.41
2029 7704 8.602472 AATGAGAGGTTCCTATATACTCCATC 57.398 38.462 0.00 0.00 0.00 3.51
2030 7705 7.350044 TGAGAGGTTCCTATATACTCCATCT 57.650 40.000 0.00 0.00 0.00 2.90
2031 7706 7.178573 TGAGAGGTTCCTATATACTCCATCTG 58.821 42.308 0.00 0.00 0.00 2.90
2033 7708 7.540183 AGAGGTTCCTATATACTCCATCTGTT 58.460 38.462 0.00 0.00 0.00 3.16
2034 7709 8.013667 AGAGGTTCCTATATACTCCATCTGTTT 58.986 37.037 0.00 0.00 0.00 2.83
2035 7710 8.196378 AGGTTCCTATATACTCCATCTGTTTC 57.804 38.462 0.00 0.00 0.00 2.78
2036 7711 7.789831 AGGTTCCTATATACTCCATCTGTTTCA 59.210 37.037 0.00 0.00 0.00 2.69
2037 7712 8.429641 GGTTCCTATATACTCCATCTGTTTCAA 58.570 37.037 0.00 0.00 0.00 2.69
2038 7713 9.832445 GTTCCTATATACTCCATCTGTTTCAAA 57.168 33.333 0.00 0.00 0.00 2.69
2045 7720 6.727824 ACTCCATCTGTTTCAAATTACTCG 57.272 37.500 0.00 0.00 0.00 4.18
2046 7721 6.231211 ACTCCATCTGTTTCAAATTACTCGT 58.769 36.000 0.00 0.00 0.00 4.18
2047 7722 6.369065 ACTCCATCTGTTTCAAATTACTCGTC 59.631 38.462 0.00 0.00 0.00 4.20
2048 7723 5.347635 TCCATCTGTTTCAAATTACTCGTCG 59.652 40.000 0.00 0.00 0.00 5.12
2049 7724 4.640805 TCTGTTTCAAATTACTCGTCGC 57.359 40.909 0.00 0.00 0.00 5.19
2050 7725 4.052608 TCTGTTTCAAATTACTCGTCGCA 58.947 39.130 0.00 0.00 0.00 5.10
2051 7726 4.508492 TCTGTTTCAAATTACTCGTCGCAA 59.492 37.500 0.00 0.00 0.00 4.85
2052 7727 5.006844 TCTGTTTCAAATTACTCGTCGCAAA 59.993 36.000 0.00 0.00 0.00 3.68
2053 7728 5.570344 TGTTTCAAATTACTCGTCGCAAAA 58.430 33.333 0.00 0.00 0.00 2.44
2054 7729 6.028368 TGTTTCAAATTACTCGTCGCAAAAA 58.972 32.000 0.00 0.00 0.00 1.94
2055 7730 6.693545 TGTTTCAAATTACTCGTCGCAAAAAT 59.306 30.769 0.00 0.00 0.00 1.82
2056 7731 6.667981 TTCAAATTACTCGTCGCAAAAATG 57.332 33.333 0.00 0.00 0.00 2.32
2057 7732 5.150683 TCAAATTACTCGTCGCAAAAATGG 58.849 37.500 0.00 0.00 0.00 3.16
2058 7733 5.049336 TCAAATTACTCGTCGCAAAAATGGA 60.049 36.000 0.00 0.00 0.00 3.41
2059 7734 5.560966 AATTACTCGTCGCAAAAATGGAT 57.439 34.783 0.00 0.00 0.00 3.41
2060 7735 2.900122 ACTCGTCGCAAAAATGGATG 57.100 45.000 0.00 0.00 0.00 3.51
2061 7736 2.151202 ACTCGTCGCAAAAATGGATGT 58.849 42.857 0.00 0.00 0.00 3.06
2062 7737 3.331150 ACTCGTCGCAAAAATGGATGTA 58.669 40.909 0.00 0.00 0.00 2.29
2063 7738 3.938963 ACTCGTCGCAAAAATGGATGTAT 59.061 39.130 0.00 0.00 0.00 2.29
2064 7739 4.034048 ACTCGTCGCAAAAATGGATGTATC 59.966 41.667 0.00 0.00 0.00 2.24
2065 7740 4.188462 TCGTCGCAAAAATGGATGTATCT 58.812 39.130 0.00 0.00 0.00 1.98
2066 7741 5.353111 TCGTCGCAAAAATGGATGTATCTA 58.647 37.500 0.00 0.00 0.00 1.98
2067 7742 5.462068 TCGTCGCAAAAATGGATGTATCTAG 59.538 40.000 0.00 0.00 0.00 2.43
2068 7743 5.462068 CGTCGCAAAAATGGATGTATCTAGA 59.538 40.000 0.00 0.00 0.00 2.43
2069 7744 6.019075 CGTCGCAAAAATGGATGTATCTAGAA 60.019 38.462 0.00 0.00 0.00 2.10
2070 7745 7.126398 GTCGCAAAAATGGATGTATCTAGAAC 58.874 38.462 0.00 0.00 0.00 3.01
2071 7746 7.011482 GTCGCAAAAATGGATGTATCTAGAACT 59.989 37.037 0.00 0.00 0.00 3.01
2072 7747 8.201464 TCGCAAAAATGGATGTATCTAGAACTA 58.799 33.333 0.00 0.00 0.00 2.24
2073 7748 8.826710 CGCAAAAATGGATGTATCTAGAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
2102 7777 8.262601 ACATTTAGATACATCCATACCTGTGA 57.737 34.615 0.00 0.00 0.00 3.58
2103 7778 8.150945 ACATTTAGATACATCCATACCTGTGAC 58.849 37.037 0.00 0.00 0.00 3.67
2104 7779 7.669089 TTTAGATACATCCATACCTGTGACA 57.331 36.000 0.00 0.00 0.00 3.58
2105 7780 7.669089 TTAGATACATCCATACCTGTGACAA 57.331 36.000 0.00 0.00 0.00 3.18
2106 7781 6.166984 AGATACATCCATACCTGTGACAAG 57.833 41.667 0.00 0.00 0.00 3.16
2107 7782 5.663106 AGATACATCCATACCTGTGACAAGT 59.337 40.000 0.00 0.00 0.00 3.16
2108 7783 6.839134 AGATACATCCATACCTGTGACAAGTA 59.161 38.462 0.00 0.00 0.00 2.24
2109 7784 5.755409 ACATCCATACCTGTGACAAGTAA 57.245 39.130 0.00 0.00 0.00 2.24
2110 7785 6.313519 ACATCCATACCTGTGACAAGTAAT 57.686 37.500 0.00 0.00 0.00 1.89
2111 7786 6.721318 ACATCCATACCTGTGACAAGTAATT 58.279 36.000 0.00 0.00 0.00 1.40
2112 7787 6.823689 ACATCCATACCTGTGACAAGTAATTC 59.176 38.462 0.00 0.00 0.00 2.17
2113 7788 5.416083 TCCATACCTGTGACAAGTAATTCG 58.584 41.667 0.00 0.00 0.00 3.34
2114 7789 4.570772 CCATACCTGTGACAAGTAATTCGG 59.429 45.833 0.00 0.00 0.00 4.30
2115 7790 5.416083 CATACCTGTGACAAGTAATTCGGA 58.584 41.667 0.00 0.00 0.00 4.55
2116 7791 4.345859 ACCTGTGACAAGTAATTCGGAA 57.654 40.909 0.00 0.00 0.00 4.30
2117 7792 4.062991 ACCTGTGACAAGTAATTCGGAAC 58.937 43.478 0.00 0.00 0.00 3.62
2242 7918 3.511146 TCATGTCCTTCAAATTTGCTCCC 59.489 43.478 13.54 1.23 0.00 4.30
2251 7927 6.094186 CCTTCAAATTTGCTCCCTAAGTACTC 59.906 42.308 13.54 0.00 0.00 2.59
2474 8857 3.243301 GCATCGTCAAAGCAATCATCCAT 60.243 43.478 0.00 0.00 0.00 3.41
2512 9193 3.372206 CCAAAGGAACAACGCTAGATCAG 59.628 47.826 0.00 0.00 0.00 2.90
2651 10731 9.979578 ATTTTGAGCACTAAATGTAAAACATCA 57.020 25.926 3.10 0.00 37.97 3.07
2711 11017 9.968870 AATTAAGACTTTCTATACGATGAGACC 57.031 33.333 0.00 0.00 0.00 3.85
2734 11040 0.992695 AGGTGGGAGGAAAACTAGCC 59.007 55.000 0.00 0.00 0.00 3.93
2738 11044 1.079336 GGAGGAAAACTAGCCGCGT 60.079 57.895 4.92 0.00 0.00 6.01
2872 11178 2.093973 GGATCTCAGACGTGACCAACAT 60.094 50.000 0.00 0.00 0.00 2.71
2882 11188 3.764434 ACGTGACCAACATAGAGATCACT 59.236 43.478 0.00 0.00 35.41 3.41
2883 11189 4.108336 CGTGACCAACATAGAGATCACTG 58.892 47.826 2.56 0.00 35.41 3.66
2888 11194 4.081420 ACCAACATAGAGATCACTGACCAC 60.081 45.833 2.56 0.00 0.00 4.16
2890 11196 5.396101 CCAACATAGAGATCACTGACCACAT 60.396 44.000 2.56 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.636206 GGGTGTGGTTAGATCTCAATTGAC 59.364 45.833 3.38 0.00 0.00 3.18
25 26 4.394729 GTTTGGGTGTGGTTAGATCTCAA 58.605 43.478 0.00 0.00 0.00 3.02
35 36 1.501604 AGTATTGGGTTTGGGTGTGGT 59.498 47.619 0.00 0.00 0.00 4.16
78 79 8.253113 CCTCAAAAATAGCTATTTCCACATGTT 58.747 33.333 27.56 15.65 35.00 2.71
80 81 7.999679 TCCTCAAAAATAGCTATTTCCACATG 58.000 34.615 27.56 20.38 35.00 3.21
101 102 7.183433 GCGAAAATGTCTCTTCTAAATTCCTC 58.817 38.462 0.00 0.00 0.00 3.71
121 122 0.665972 GATTTGGGCTTTGCGCGAAA 60.666 50.000 12.10 0.74 45.45 3.46
124 129 2.506881 GGATTTGGGCTTTGCGCG 60.507 61.111 0.00 0.00 44.57 6.86
129 134 5.222079 ACGTAAATTTGGATTTGGGCTTT 57.778 34.783 0.00 0.00 36.22 3.51
189 194 4.907879 GATGGAATCACCCATGAGTTTC 57.092 45.455 0.00 0.00 46.34 2.78
206 341 0.392863 TGGAGCATCGGTGTTGATGG 60.393 55.000 0.00 0.00 44.72 3.51
209 344 1.374125 CGTGGAGCATCGGTGTTGA 60.374 57.895 0.00 0.00 34.37 3.18
211 346 2.047274 CCGTGGAGCATCGGTGTT 60.047 61.111 0.00 0.00 41.58 3.32
219 354 0.815734 GTAACTAGAGCCGTGGAGCA 59.184 55.000 0.00 0.00 34.23 4.26
227 362 1.320507 CGGAGGGAGTAACTAGAGCC 58.679 60.000 0.00 0.00 0.00 4.70
232 367 1.358787 TGGGAACGGAGGGAGTAACTA 59.641 52.381 0.00 0.00 0.00 2.24
236 371 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
237 372 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
238 373 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
239 374 3.010808 ACAATTATTTGGGAACGGAGGGA 59.989 43.478 2.66 0.00 37.15 4.20
240 375 3.361786 ACAATTATTTGGGAACGGAGGG 58.638 45.455 2.66 0.00 37.15 4.30
241 376 4.270008 AGACAATTATTTGGGAACGGAGG 58.730 43.478 2.66 0.00 37.15 4.30
242 377 5.897377 AAGACAATTATTTGGGAACGGAG 57.103 39.130 2.66 0.00 37.15 4.63
243 378 6.007703 AGAAAGACAATTATTTGGGAACGGA 58.992 36.000 2.66 0.00 37.15 4.69
244 379 6.267496 AGAAAGACAATTATTTGGGAACGG 57.733 37.500 2.66 0.00 37.15 4.44
245 380 8.263940 TCTAGAAAGACAATTATTTGGGAACG 57.736 34.615 0.00 0.00 37.15 3.95
246 381 9.449719 TCTCTAGAAAGACAATTATTTGGGAAC 57.550 33.333 0.00 0.00 37.15 3.62
257 392 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
258 393 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
259 394 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
260 395 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
261 396 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
262 397 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
263 398 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
264 399 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
265 400 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
266 401 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
267 402 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
268 403 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
269 404 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
270 405 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
271 406 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
272 407 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
273 408 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
274 409 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
275 410 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
276 411 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
277 412 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
278 413 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
279 414 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
280 415 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
281 416 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
282 417 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
283 418 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
284 419 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
285 420 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
286 421 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
287 422 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
288 423 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
289 424 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
290 425 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
291 426 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
292 427 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
293 428 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
294 429 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
295 430 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
316 451 9.302345 CGAATGTATGTAGACATGTTTTAGAGT 57.698 33.333 0.00 0.00 39.99 3.24
317 452 9.302345 ACGAATGTATGTAGACATGTTTTAGAG 57.698 33.333 0.00 0.00 39.99 2.43
336 471 9.261180 CTCAAATGGACTACAATATACGAATGT 57.739 33.333 0.00 0.00 0.00 2.71
337 472 9.476202 TCTCAAATGGACTACAATATACGAATG 57.524 33.333 0.00 0.00 0.00 2.67
339 474 9.476202 CATCTCAAATGGACTACAATATACGAA 57.524 33.333 0.00 0.00 0.00 3.85
340 475 8.088365 CCATCTCAAATGGACTACAATATACGA 58.912 37.037 0.00 0.00 41.64 3.43
341 476 7.148573 GCCATCTCAAATGGACTACAATATACG 60.149 40.741 8.23 0.00 41.64 3.06
342 477 7.880195 AGCCATCTCAAATGGACTACAATATAC 59.120 37.037 8.23 0.00 41.64 1.47
343 478 7.977818 AGCCATCTCAAATGGACTACAATATA 58.022 34.615 8.23 0.00 41.64 0.86
344 479 6.845908 AGCCATCTCAAATGGACTACAATAT 58.154 36.000 8.23 0.00 41.64 1.28
345 480 6.252599 AGCCATCTCAAATGGACTACAATA 57.747 37.500 8.23 0.00 41.64 1.90
346 481 5.121380 AGCCATCTCAAATGGACTACAAT 57.879 39.130 8.23 0.00 41.64 2.71
347 482 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
348 483 4.469586 TGTAGCCATCTCAAATGGACTACA 59.530 41.667 22.88 22.88 45.35 2.74
349 484 5.023533 TGTAGCCATCTCAAATGGACTAC 57.976 43.478 20.10 20.10 42.43 2.73
350 485 5.894298 ATGTAGCCATCTCAAATGGACTA 57.106 39.130 8.23 6.27 41.64 2.59
351 486 4.785346 ATGTAGCCATCTCAAATGGACT 57.215 40.909 8.23 7.12 41.64 3.85
352 487 5.368145 TGTATGTAGCCATCTCAAATGGAC 58.632 41.667 8.23 0.00 41.64 4.02
353 488 5.628797 TGTATGTAGCCATCTCAAATGGA 57.371 39.130 8.23 0.00 41.64 3.41
354 489 5.766670 ACATGTATGTAGCCATCTCAAATGG 59.233 40.000 0.00 0.00 39.68 3.16
355 490 6.709397 AGACATGTATGTAGCCATCTCAAATG 59.291 38.462 0.00 0.00 41.95 2.32
356 491 6.835174 AGACATGTATGTAGCCATCTCAAAT 58.165 36.000 0.00 0.00 41.95 2.32
357 492 6.239217 AGACATGTATGTAGCCATCTCAAA 57.761 37.500 0.00 0.00 41.95 2.69
358 493 5.876651 AGACATGTATGTAGCCATCTCAA 57.123 39.130 0.00 0.00 41.95 3.02
359 494 6.071320 AGTAGACATGTATGTAGCCATCTCA 58.929 40.000 2.50 0.00 41.95 3.27
360 495 6.432783 AGAGTAGACATGTATGTAGCCATCTC 59.567 42.308 2.50 0.19 41.95 2.75
361 496 6.310941 AGAGTAGACATGTATGTAGCCATCT 58.689 40.000 2.50 0.00 41.95 2.90
362 497 6.582677 AGAGTAGACATGTATGTAGCCATC 57.417 41.667 2.50 0.00 41.95 3.51
363 498 8.478775 TTTAGAGTAGACATGTATGTAGCCAT 57.521 34.615 2.50 0.00 41.95 4.40
364 499 7.891498 TTTAGAGTAGACATGTATGTAGCCA 57.109 36.000 2.50 0.00 41.95 4.75
365 500 8.195436 TGTTTTAGAGTAGACATGTATGTAGCC 58.805 37.037 2.50 0.00 41.95 3.93
366 501 9.751542 ATGTTTTAGAGTAGACATGTATGTAGC 57.248 33.333 2.50 0.00 41.95 3.58
376 511 9.856488 GAATGTAGACATGTTTTAGAGTAGACA 57.144 33.333 0.00 0.00 36.56 3.41
377 512 9.011407 CGAATGTAGACATGTTTTAGAGTAGAC 57.989 37.037 0.00 0.00 36.56 2.59
378 513 8.737175 ACGAATGTAGACATGTTTTAGAGTAGA 58.263 33.333 0.00 0.00 36.56 2.59
379 514 8.912787 ACGAATGTAGACATGTTTTAGAGTAG 57.087 34.615 0.00 0.00 36.56 2.57
381 516 9.302345 CATACGAATGTAGACATGTTTTAGAGT 57.698 33.333 0.00 0.00 36.56 3.24
382 517 9.302345 ACATACGAATGTAGACATGTTTTAGAG 57.698 33.333 0.00 0.00 44.66 2.43
383 518 9.647797 AACATACGAATGTAGACATGTTTTAGA 57.352 29.630 0.00 0.00 45.79 2.10
388 523 9.647797 TCTAAAACATACGAATGTAGACATGTT 57.352 29.630 0.00 0.00 45.79 2.71
389 524 9.302345 CTCTAAAACATACGAATGTAGACATGT 57.698 33.333 0.00 0.00 45.79 3.21
390 525 9.302345 ACTCTAAAACATACGAATGTAGACATG 57.698 33.333 0.00 0.00 45.79 3.21
391 526 9.302345 CACTCTAAAACATACGAATGTAGACAT 57.698 33.333 0.00 0.00 45.79 3.06
392 527 8.301720 ACACTCTAAAACATACGAATGTAGACA 58.698 33.333 0.00 0.00 45.79 3.41
393 528 8.684973 ACACTCTAAAACATACGAATGTAGAC 57.315 34.615 0.00 0.00 45.79 2.59
394 529 9.999009 CTACACTCTAAAACATACGAATGTAGA 57.001 33.333 0.00 0.00 45.79 2.59
395 530 9.999009 TCTACACTCTAAAACATACGAATGTAG 57.001 33.333 0.00 0.00 45.79 2.74
400 535 9.350357 GTGAATCTACACTCTAAAACATACGAA 57.650 33.333 0.00 0.00 37.73 3.85
401 536 8.737175 AGTGAATCTACACTCTAAAACATACGA 58.263 33.333 0.00 0.00 46.36 3.43
402 537 8.912787 AGTGAATCTACACTCTAAAACATACG 57.087 34.615 0.00 0.00 46.36 3.06
415 550 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
416 551 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
417 552 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
418 553 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
419 554 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
420 555 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
421 556 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
422 557 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
423 558 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
424 559 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
425 560 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
426 561 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
427 562 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
428 563 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
429 564 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
430 565 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
431 566 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
432 567 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
433 568 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
434 569 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
435 570 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
436 571 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
437 572 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
438 573 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
439 574 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
441 576 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
442 577 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
443 578 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
444 579 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
445 580 7.659390 CCTTTCTAGAGATTTCAACAAGTGACT 59.341 37.037 0.00 0.00 35.39 3.41
446 581 7.657761 TCCTTTCTAGAGATTTCAACAAGTGAC 59.342 37.037 0.00 0.00 35.39 3.67
447 582 7.735917 TCCTTTCTAGAGATTTCAACAAGTGA 58.264 34.615 0.00 0.00 0.00 3.41
448 583 7.969536 TCCTTTCTAGAGATTTCAACAAGTG 57.030 36.000 0.00 0.00 0.00 3.16
449 584 7.171678 CGTTCCTTTCTAGAGATTTCAACAAGT 59.828 37.037 0.00 0.00 0.00 3.16
450 585 7.360438 CCGTTCCTTTCTAGAGATTTCAACAAG 60.360 40.741 0.00 0.00 0.00 3.16
451 586 6.426937 CCGTTCCTTTCTAGAGATTTCAACAA 59.573 38.462 0.00 0.00 0.00 2.83
452 587 5.932303 CCGTTCCTTTCTAGAGATTTCAACA 59.068 40.000 0.00 0.00 0.00 3.33
453 588 6.164176 TCCGTTCCTTTCTAGAGATTTCAAC 58.836 40.000 0.00 0.00 0.00 3.18
454 589 6.354794 TCCGTTCCTTTCTAGAGATTTCAA 57.645 37.500 0.00 0.00 0.00 2.69
455 590 5.105310 CCTCCGTTCCTTTCTAGAGATTTCA 60.105 44.000 0.00 0.00 0.00 2.69
456 591 5.353111 CCTCCGTTCCTTTCTAGAGATTTC 58.647 45.833 0.00 0.00 0.00 2.17
457 592 4.162509 CCCTCCGTTCCTTTCTAGAGATTT 59.837 45.833 0.00 0.00 0.00 2.17
458 593 3.707102 CCCTCCGTTCCTTTCTAGAGATT 59.293 47.826 0.00 0.00 0.00 2.40
459 594 3.052793 TCCCTCCGTTCCTTTCTAGAGAT 60.053 47.826 0.00 0.00 0.00 2.75
460 595 2.310945 TCCCTCCGTTCCTTTCTAGAGA 59.689 50.000 0.00 0.00 0.00 3.10
461 596 2.691011 CTCCCTCCGTTCCTTTCTAGAG 59.309 54.545 0.00 0.00 0.00 2.43
462 597 2.042706 ACTCCCTCCGTTCCTTTCTAGA 59.957 50.000 0.00 0.00 0.00 2.43
463 598 2.458620 ACTCCCTCCGTTCCTTTCTAG 58.541 52.381 0.00 0.00 0.00 2.43
464 599 2.617840 ACTCCCTCCGTTCCTTTCTA 57.382 50.000 0.00 0.00 0.00 2.10
465 600 2.225318 ACTACTCCCTCCGTTCCTTTCT 60.225 50.000 0.00 0.00 0.00 2.52
466 601 2.177734 ACTACTCCCTCCGTTCCTTTC 58.822 52.381 0.00 0.00 0.00 2.62
467 602 2.322339 ACTACTCCCTCCGTTCCTTT 57.678 50.000 0.00 0.00 0.00 3.11
468 603 2.322339 AACTACTCCCTCCGTTCCTT 57.678 50.000 0.00 0.00 0.00 3.36
469 604 2.322339 AAACTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
470 605 2.827921 TGTAAACTACTCCCTCCGTTCC 59.172 50.000 0.00 0.00 0.00 3.62
471 606 3.509184 ACTGTAAACTACTCCCTCCGTTC 59.491 47.826 0.00 0.00 0.00 3.95
472 607 3.504375 ACTGTAAACTACTCCCTCCGTT 58.496 45.455 0.00 0.00 0.00 4.44
473 608 3.166560 ACTGTAAACTACTCCCTCCGT 57.833 47.619 0.00 0.00 0.00 4.69
474 609 4.335037 GTCTACTGTAAACTACTCCCTCCG 59.665 50.000 0.00 0.00 0.00 4.63
475 610 4.335037 CGTCTACTGTAAACTACTCCCTCC 59.665 50.000 0.00 0.00 0.00 4.30
476 611 4.940654 ACGTCTACTGTAAACTACTCCCTC 59.059 45.833 0.00 0.00 0.00 4.30
477 612 4.916183 ACGTCTACTGTAAACTACTCCCT 58.084 43.478 0.00 0.00 0.00 4.20
478 613 5.397326 CAACGTCTACTGTAAACTACTCCC 58.603 45.833 0.00 0.00 0.00 4.30
479 614 4.855937 GCAACGTCTACTGTAAACTACTCC 59.144 45.833 0.00 0.00 0.00 3.85
480 615 4.552660 CGCAACGTCTACTGTAAACTACTC 59.447 45.833 0.00 0.00 0.00 2.59
481 616 4.023707 ACGCAACGTCTACTGTAAACTACT 60.024 41.667 0.00 0.00 33.69 2.57
482 617 4.087648 CACGCAACGTCTACTGTAAACTAC 59.912 45.833 0.00 0.00 38.32 2.73
520 655 1.557832 TCAACCCACACTAGCATACCC 59.442 52.381 0.00 0.00 0.00 3.69
529 666 2.745152 CGGTTTCTTCTCAACCCACACT 60.745 50.000 0.00 0.00 40.74 3.55
538 675 2.363788 CGATCCACGGTTTCTTCTCA 57.636 50.000 0.00 0.00 38.46 3.27
589 726 3.446442 ACTGGAAAGACGGTAGGAGTA 57.554 47.619 0.00 0.00 0.00 2.59
590 727 2.305858 ACTGGAAAGACGGTAGGAGT 57.694 50.000 0.00 0.00 0.00 3.85
591 728 4.401519 TCATAACTGGAAAGACGGTAGGAG 59.598 45.833 0.00 0.00 0.00 3.69
592 729 4.346730 TCATAACTGGAAAGACGGTAGGA 58.653 43.478 0.00 0.00 0.00 2.94
593 730 4.730949 TCATAACTGGAAAGACGGTAGG 57.269 45.455 0.00 0.00 0.00 3.18
594 731 5.475719 TGTTCATAACTGGAAAGACGGTAG 58.524 41.667 0.00 0.00 0.00 3.18
595 732 5.471556 TGTTCATAACTGGAAAGACGGTA 57.528 39.130 0.00 0.00 0.00 4.02
602 739 7.339721 TGGTACTTTGTTGTTCATAACTGGAAA 59.660 33.333 0.00 0.00 0.00 3.13
627 764 1.254026 TTCGGGGAGTAGTGTGAGTG 58.746 55.000 0.00 0.00 0.00 3.51
632 769 1.969862 CCGTTTCGGGGAGTAGTGT 59.030 57.895 0.00 0.00 44.15 3.55
677 814 2.167693 GGTACATCTGGTGTTGGATCGA 59.832 50.000 0.00 0.00 42.29 3.59
723 860 1.061711 CATGCAGCGTGAGTTAGAAGC 59.938 52.381 9.20 0.00 0.00 3.86
806 952 0.462047 CGGTGATGGACTTGGTAGGC 60.462 60.000 0.00 0.00 0.00 3.93
908 1061 1.647629 CATGCATGCTCGAAGCTCC 59.352 57.895 20.33 0.00 42.97 4.70
1009 1162 2.101415 TGTGAAGTAGCTGATCGATGGG 59.899 50.000 0.54 0.00 0.00 4.00
1015 1172 2.680312 TGCCTGTGAAGTAGCTGATC 57.320 50.000 0.00 0.00 0.00 2.92
1019 1176 0.671781 CGCTTGCCTGTGAAGTAGCT 60.672 55.000 0.00 0.00 0.00 3.32
1020 1177 0.670546 TCGCTTGCCTGTGAAGTAGC 60.671 55.000 0.00 0.00 0.00 3.58
1022 1179 0.679505 ACTCGCTTGCCTGTGAAGTA 59.320 50.000 0.00 0.00 0.00 2.24
1024 1181 1.572085 CCACTCGCTTGCCTGTGAAG 61.572 60.000 12.00 0.00 32.72 3.02
1026 1183 1.468506 TACCACTCGCTTGCCTGTGA 61.469 55.000 12.00 0.00 32.72 3.58
1207 1383 2.464157 ACTACCACTGAGCTTCAAGC 57.536 50.000 0.00 0.00 42.84 4.01
1209 1385 5.322754 AGTACTACTACCACTGAGCTTCAA 58.677 41.667 0.00 0.00 0.00 2.69
1210 1386 4.919793 AGTACTACTACCACTGAGCTTCA 58.080 43.478 0.00 0.00 0.00 3.02
1238 1424 4.707105 TCCATCGTCTATGCATTGACATT 58.293 39.130 31.21 19.50 33.15 2.71
1252 1443 0.749649 ATGAGCTGGTCTCCATCGTC 59.250 55.000 8.47 0.00 41.18 4.20
1281 1492 2.356135 GTACGTTGATGGCAATGGAGT 58.644 47.619 0.00 0.00 43.70 3.85
1284 1495 1.670811 GAGGTACGTTGATGGCAATGG 59.329 52.381 0.00 0.00 43.70 3.16
1285 1496 2.352651 CTGAGGTACGTTGATGGCAATG 59.647 50.000 0.00 0.00 44.70 2.82
1286 1497 2.632377 CTGAGGTACGTTGATGGCAAT 58.368 47.619 0.00 0.00 36.22 3.56
1287 1498 1.338674 CCTGAGGTACGTTGATGGCAA 60.339 52.381 0.00 0.00 0.00 4.52
1335 1546 0.107361 TCTCATAGTCGCCGTGGAGA 60.107 55.000 0.00 0.00 0.00 3.71
1336 1547 0.309302 CTCTCATAGTCGCCGTGGAG 59.691 60.000 0.00 0.00 0.00 3.86
1470 1695 0.326522 TAGATGGCTCCTGGCTGGAA 60.327 55.000 14.44 0.00 45.63 3.53
1474 1699 1.977129 GATCTTAGATGGCTCCTGGCT 59.023 52.381 0.00 0.00 41.46 4.75
1519 1744 2.203294 GGCGACCACACCAAAGGT 60.203 61.111 0.00 0.00 41.83 3.50
1520 1745 3.353836 CGGCGACCACACCAAAGG 61.354 66.667 0.00 0.00 0.00 3.11
1521 1746 3.353836 CCGGCGACCACACCAAAG 61.354 66.667 9.30 0.00 0.00 2.77
1562 1796 4.662961 CCGACACGCACTCTGGCA 62.663 66.667 0.00 0.00 0.00 4.92
1574 1808 4.201679 CGCATAGGGTCGCCGACA 62.202 66.667 20.08 0.00 33.68 4.35
1725 1959 3.455469 GGGACGGGGTGGTAGTCG 61.455 72.222 0.00 0.00 35.87 4.18
1790 7286 1.086634 GGTGGCAGATCGAAGTCAGC 61.087 60.000 4.38 4.38 0.00 4.26
1797 7296 3.822192 CGGACGGTGGCAGATCGA 61.822 66.667 10.96 0.00 0.00 3.59
2011 7686 7.963532 TGAAACAGATGGAGTATATAGGAACC 58.036 38.462 0.00 0.00 0.00 3.62
2022 7697 6.231211 ACGAGTAATTTGAAACAGATGGAGT 58.769 36.000 0.00 0.00 0.00 3.85
2023 7698 6.454318 CGACGAGTAATTTGAAACAGATGGAG 60.454 42.308 0.00 0.00 0.00 3.86
2024 7699 5.347635 CGACGAGTAATTTGAAACAGATGGA 59.652 40.000 0.00 0.00 0.00 3.41
2025 7700 5.550981 CGACGAGTAATTTGAAACAGATGG 58.449 41.667 0.00 0.00 0.00 3.51
2026 7701 5.015733 GCGACGAGTAATTTGAAACAGATG 58.984 41.667 0.00 0.00 0.00 2.90
2027 7702 4.688879 TGCGACGAGTAATTTGAAACAGAT 59.311 37.500 0.00 0.00 0.00 2.90
2028 7703 4.052608 TGCGACGAGTAATTTGAAACAGA 58.947 39.130 0.00 0.00 0.00 3.41
2029 7704 4.383774 TGCGACGAGTAATTTGAAACAG 57.616 40.909 0.00 0.00 0.00 3.16
2030 7705 4.797693 TTGCGACGAGTAATTTGAAACA 57.202 36.364 0.00 0.00 0.00 2.83
2031 7706 6.485253 TTTTTGCGACGAGTAATTTGAAAC 57.515 33.333 0.00 0.00 0.00 2.78
2033 7708 5.627367 CCATTTTTGCGACGAGTAATTTGAA 59.373 36.000 0.00 0.00 0.00 2.69
2034 7709 5.049336 TCCATTTTTGCGACGAGTAATTTGA 60.049 36.000 0.00 0.00 0.00 2.69
2035 7710 5.150683 TCCATTTTTGCGACGAGTAATTTG 58.849 37.500 0.00 0.00 0.00 2.32
2036 7711 5.365403 TCCATTTTTGCGACGAGTAATTT 57.635 34.783 0.00 0.00 0.00 1.82
2037 7712 5.106317 ACATCCATTTTTGCGACGAGTAATT 60.106 36.000 0.00 0.00 0.00 1.40
2038 7713 4.394920 ACATCCATTTTTGCGACGAGTAAT 59.605 37.500 0.00 0.00 0.00 1.89
2039 7714 3.749088 ACATCCATTTTTGCGACGAGTAA 59.251 39.130 0.00 0.00 0.00 2.24
2040 7715 3.331150 ACATCCATTTTTGCGACGAGTA 58.669 40.909 0.00 0.00 0.00 2.59
2041 7716 2.151202 ACATCCATTTTTGCGACGAGT 58.849 42.857 0.00 0.00 0.00 4.18
2042 7717 2.900122 ACATCCATTTTTGCGACGAG 57.100 45.000 0.00 0.00 0.00 4.18
2043 7718 4.188462 AGATACATCCATTTTTGCGACGA 58.812 39.130 0.00 0.00 0.00 4.20
2044 7719 4.536364 AGATACATCCATTTTTGCGACG 57.464 40.909 0.00 0.00 0.00 5.12
2045 7720 6.844696 TCTAGATACATCCATTTTTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
2046 7721 7.047891 AGTTCTAGATACATCCATTTTTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
2047 7722 7.251704 AGTTCTAGATACATCCATTTTTGCG 57.748 36.000 0.00 0.00 0.00 4.85
2076 7751 9.374711 TCACAGGTATGGATGTATCTAAATGTA 57.625 33.333 0.00 0.00 0.00 2.29
2077 7752 8.150945 GTCACAGGTATGGATGTATCTAAATGT 58.849 37.037 0.00 0.00 0.00 2.71
2078 7753 8.150296 TGTCACAGGTATGGATGTATCTAAATG 58.850 37.037 0.00 0.00 0.00 2.32
2079 7754 8.262601 TGTCACAGGTATGGATGTATCTAAAT 57.737 34.615 0.00 0.00 0.00 1.40
2080 7755 7.669089 TGTCACAGGTATGGATGTATCTAAA 57.331 36.000 0.00 0.00 0.00 1.85
2081 7756 7.344612 ACTTGTCACAGGTATGGATGTATCTAA 59.655 37.037 0.00 0.00 0.00 2.10
2082 7757 6.839134 ACTTGTCACAGGTATGGATGTATCTA 59.161 38.462 0.00 0.00 0.00 1.98
2083 7758 5.663106 ACTTGTCACAGGTATGGATGTATCT 59.337 40.000 0.00 0.00 0.00 1.98
2084 7759 5.918608 ACTTGTCACAGGTATGGATGTATC 58.081 41.667 0.00 0.00 0.00 2.24
2085 7760 5.957771 ACTTGTCACAGGTATGGATGTAT 57.042 39.130 0.00 0.00 0.00 2.29
2086 7761 6.860790 TTACTTGTCACAGGTATGGATGTA 57.139 37.500 0.00 0.00 0.00 2.29
2087 7762 5.755409 TTACTTGTCACAGGTATGGATGT 57.245 39.130 0.00 0.00 0.00 3.06
2088 7763 6.018751 CGAATTACTTGTCACAGGTATGGATG 60.019 42.308 0.00 0.00 0.00 3.51
2089 7764 6.049149 CGAATTACTTGTCACAGGTATGGAT 58.951 40.000 0.00 0.00 0.00 3.41
2090 7765 5.416083 CGAATTACTTGTCACAGGTATGGA 58.584 41.667 0.00 0.00 0.00 3.41
2091 7766 4.570772 CCGAATTACTTGTCACAGGTATGG 59.429 45.833 0.00 0.00 0.00 2.74
2092 7767 5.416083 TCCGAATTACTTGTCACAGGTATG 58.584 41.667 0.00 0.00 0.00 2.39
2093 7768 5.670792 TCCGAATTACTTGTCACAGGTAT 57.329 39.130 0.00 0.00 0.00 2.73
2094 7769 5.232463 GTTCCGAATTACTTGTCACAGGTA 58.768 41.667 0.00 0.00 0.00 3.08
2095 7770 4.062991 GTTCCGAATTACTTGTCACAGGT 58.937 43.478 0.00 0.00 0.00 4.00
2096 7771 3.122948 CGTTCCGAATTACTTGTCACAGG 59.877 47.826 0.00 0.00 0.00 4.00
2097 7772 3.122948 CCGTTCCGAATTACTTGTCACAG 59.877 47.826 0.00 0.00 0.00 3.66
2098 7773 3.061322 CCGTTCCGAATTACTTGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
2099 7774 3.319755 TCCGTTCCGAATTACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
2100 7775 3.581755 CTCCGTTCCGAATTACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2101 7776 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2102 7777 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2103 7778 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2104 7779 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2105 7780 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2106 7781 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2107 7782 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2108 7783 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
2109 7784 1.687123 CATACTCCCTCCGTTCCGAAT 59.313 52.381 0.00 0.00 0.00 3.34
2110 7785 1.108776 CATACTCCCTCCGTTCCGAA 58.891 55.000 0.00 0.00 0.00 4.30
2111 7786 0.256752 TCATACTCCCTCCGTTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
2112 7787 1.108776 TTCATACTCCCTCCGTTCCG 58.891 55.000 0.00 0.00 0.00 4.30
2113 7788 2.698797 TGATTCATACTCCCTCCGTTCC 59.301 50.000 0.00 0.00 0.00 3.62
2114 7789 4.120589 GTTGATTCATACTCCCTCCGTTC 58.879 47.826 0.00 0.00 0.00 3.95
2115 7790 3.118371 GGTTGATTCATACTCCCTCCGTT 60.118 47.826 0.00 0.00 0.00 4.44
2116 7791 2.434702 GGTTGATTCATACTCCCTCCGT 59.565 50.000 0.00 0.00 0.00 4.69
2117 7792 2.434336 TGGTTGATTCATACTCCCTCCG 59.566 50.000 0.00 0.00 0.00 4.63
2118 7793 4.080299 ACTTGGTTGATTCATACTCCCTCC 60.080 45.833 0.00 0.00 0.00 4.30
2119 7794 5.104259 ACTTGGTTGATTCATACTCCCTC 57.896 43.478 0.00 0.00 0.00 4.30
2120 7795 5.395324 CGTACTTGGTTGATTCATACTCCCT 60.395 44.000 0.00 0.00 0.00 4.20
2121 7796 4.809426 CGTACTTGGTTGATTCATACTCCC 59.191 45.833 0.00 0.00 0.00 4.30
2122 7797 4.270325 GCGTACTTGGTTGATTCATACTCC 59.730 45.833 0.00 0.00 0.00 3.85
2123 7798 5.109903 AGCGTACTTGGTTGATTCATACTC 58.890 41.667 0.00 0.00 0.00 2.59
2124 7799 5.086104 AGCGTACTTGGTTGATTCATACT 57.914 39.130 0.00 0.00 0.00 2.12
2125 7800 4.868171 TGAGCGTACTTGGTTGATTCATAC 59.132 41.667 0.00 0.00 0.00 2.39
2126 7801 5.079689 TGAGCGTACTTGGTTGATTCATA 57.920 39.130 0.00 0.00 0.00 2.15
2127 7802 3.937814 TGAGCGTACTTGGTTGATTCAT 58.062 40.909 0.00 0.00 0.00 2.57
2203 7878 3.118298 ACATGATTGGATGACATCGGACA 60.118 43.478 9.31 7.35 0.00 4.02
2242 7918 4.571580 AGAGAATGTCGGACGAGTACTTAG 59.428 45.833 0.00 0.00 0.00 2.18
2251 7927 2.917971 GACAAAGAGAGAATGTCGGACG 59.082 50.000 3.34 0.00 34.72 4.79
2295 7972 3.072622 AGGTCGGCTCTCCTTAAACTTTT 59.927 43.478 0.00 0.00 0.00 2.27
2474 8857 0.391793 TTGGTGTGTTGTCGTGCTCA 60.392 50.000 0.00 0.00 0.00 4.26
2582 9263 1.145819 GCAAAAGGGCAAGCAACCA 59.854 52.632 0.00 0.00 0.00 3.67
2651 10731 8.688747 TCAGCATATTTTCCAAACCAAAAATT 57.311 26.923 0.00 0.00 36.66 1.82
2711 11017 2.959465 AGTTTTCCTCCCACCTTCTG 57.041 50.000 0.00 0.00 0.00 3.02
2734 11040 0.519519 CTCCTAGATAGCTGGACGCG 59.480 60.000 3.53 3.53 45.59 6.01
2738 11044 4.413851 TGTCTTCTCTCCTAGATAGCTGGA 59.586 45.833 0.00 0.00 33.05 3.86
2872 11178 8.996651 TTCTATTATGTGGTCAGTGATCTCTA 57.003 34.615 4.73 0.00 0.00 2.43
2882 11188 6.374333 GGTTTTCTGCTTCTATTATGTGGTCA 59.626 38.462 0.00 0.00 0.00 4.02
2883 11189 6.599638 AGGTTTTCTGCTTCTATTATGTGGTC 59.400 38.462 0.00 0.00 0.00 4.02
2888 11194 8.674263 AGATGAGGTTTTCTGCTTCTATTATG 57.326 34.615 0.00 0.00 0.00 1.90
2890 11196 7.092891 TGGAGATGAGGTTTTCTGCTTCTATTA 60.093 37.037 0.00 0.00 32.16 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.