Multiple sequence alignment - TraesCS2A01G061700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G061700 chr2A 100.000 4875 0 0 623 5497 27606974 27602100 0.000000e+00 9003.0
1 TraesCS2A01G061700 chr2A 100.000 323 0 0 1 323 27607596 27607274 1.020000e-166 597.0
2 TraesCS2A01G061700 chr2A 92.208 308 22 2 3799 4105 434863787 434863481 8.460000e-118 435.0
3 TraesCS2A01G061700 chr2A 84.098 327 45 7 3800 4122 542393759 542393436 5.350000e-80 309.0
4 TraesCS2A01G061700 chr2D 95.187 3345 147 12 636 3973 25176653 25173316 0.000000e+00 5273.0
5 TraesCS2A01G061700 chr2D 94.959 1468 73 1 4031 5497 25173152 25171685 0.000000e+00 2300.0
6 TraesCS2A01G061700 chr2D 96.066 305 8 1 1 301 25176944 25176640 1.380000e-135 494.0
7 TraesCS2A01G061700 chr2B 92.694 1711 87 15 1168 2865 40908944 40907259 0.000000e+00 2433.0
8 TraesCS2A01G061700 chr2B 93.638 1399 85 3 4103 5497 40906734 40905336 0.000000e+00 2087.0
9 TraesCS2A01G061700 chr2B 93.214 1002 58 8 4497 5497 40857277 40858269 0.000000e+00 1465.0
10 TraesCS2A01G061700 chr2B 84.059 1217 169 15 964 2163 40855771 40856979 0.000000e+00 1149.0
11 TraesCS2A01G061700 chr2B 84.351 524 52 10 3302 3801 40907250 40906733 2.300000e-133 486.0
12 TraesCS2A01G061700 chr2B 91.374 313 26 1 878 1189 40909336 40909024 1.420000e-115 427.0
13 TraesCS2A01G061700 chr2B 83.894 416 52 13 2891 3300 673796926 673796520 3.110000e-102 383.0
14 TraesCS2A01G061700 chr2B 92.254 142 11 0 150 291 40910130 40909989 9.340000e-48 202.0
15 TraesCS2A01G061700 chr2B 93.396 106 6 1 50 154 40912458 40912353 7.370000e-34 156.0
16 TraesCS2A01G061700 chr2B 93.878 98 4 2 638 733 40910002 40909905 4.440000e-31 147.0
17 TraesCS2A01G061700 chr2B 91.667 84 6 1 759 841 40909563 40909480 1.250000e-21 115.0
18 TraesCS2A01G061700 chr2B 96.429 56 2 0 1 56 40912537 40912482 5.860000e-15 93.5
19 TraesCS2A01G061700 chr1A 95.498 311 12 2 3798 4107 472152651 472152342 3.820000e-136 496.0
20 TraesCS2A01G061700 chr1A 79.059 425 74 12 2871 3288 116143027 116143443 1.510000e-70 278.0
21 TraesCS2A01G061700 chr4B 91.509 318 24 3 3792 4108 232498094 232497779 8.460000e-118 435.0
22 TraesCS2A01G061700 chr7B 91.346 312 20 6 3798 4104 374490200 374490509 2.370000e-113 420.0
23 TraesCS2A01G061700 chr1D 90.939 309 28 0 3796 4104 52117576 52117884 3.060000e-112 416.0
24 TraesCS2A01G061700 chr3D 90.385 312 28 1 3799 4108 605035978 605035667 5.130000e-110 409.0
25 TraesCS2A01G061700 chr4D 90.492 305 28 1 3800 4104 421335517 421335214 8.580000e-108 401.0
26 TraesCS2A01G061700 chr3B 89.711 311 30 1 3795 4105 31675288 31674980 3.990000e-106 396.0
27 TraesCS2A01G061700 chr3B 84.451 328 40 7 3800 4124 404833866 404833547 4.130000e-81 313.0
28 TraesCS2A01G061700 chr6B 82.326 430 60 13 2878 3299 413733755 413733334 5.240000e-95 359.0
29 TraesCS2A01G061700 chr5B 82.100 419 62 10 2884 3294 367883219 367882806 4.080000e-91 346.0
30 TraesCS2A01G061700 chr1B 81.235 421 69 10 2884 3300 505143686 505143272 1.140000e-86 331.0
31 TraesCS2A01G061700 chr3A 80.288 416 72 9 2884 3294 253383284 253382874 6.920000e-79 305.0
32 TraesCS2A01G061700 chr5A 80.516 426 56 19 2886 3300 412799663 412799254 8.950000e-78 302.0
33 TraesCS2A01G061700 chr5A 79.859 427 70 11 2884 3300 412899483 412899063 1.160000e-76 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G061700 chr2A 27602100 27607596 5496 True 4800.000000 9003 100.000000 1 5497 2 chr2A.!!$R3 5496
1 TraesCS2A01G061700 chr2D 25171685 25176944 5259 True 2689.000000 5273 95.404000 1 5497 3 chr2D.!!$R1 5496
2 TraesCS2A01G061700 chr2B 40855771 40858269 2498 False 1307.000000 1465 88.636500 964 5497 2 chr2B.!!$F1 4533
3 TraesCS2A01G061700 chr2B 40905336 40912537 7201 True 682.944444 2433 92.186778 1 5497 9 chr2B.!!$R2 5496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 3592 0.599060 CATGGTGCATGCTGTTCACA 59.401 50.0 20.33 8.88 35.02 3.58 F
905 3593 0.599558 ATGGTGCATGCTGTTCACAC 59.400 50.0 20.33 6.38 32.69 3.82 F
1076 3764 1.244019 AATGCAGAGCCCGTGAAACC 61.244 55.0 0.00 0.00 0.00 3.27 F
2811 5632 0.958382 TTTCTTTCGTGCCCCCATCG 60.958 55.0 0.00 0.00 0.00 3.84 F
3277 6100 0.179161 GGGAGACGACGTGATGAGTG 60.179 60.0 4.58 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 4635 0.314935 ATGCACTTGTTTGCCCTTCG 59.685 50.0 0.00 0.0 42.25 3.79 R
2800 5621 0.468029 ATCAAATCCGATGGGGGCAC 60.468 55.0 0.00 0.0 36.01 5.01 R
2897 5718 0.526662 CCCGTACCTCGAGATATGCC 59.473 60.0 15.71 0.0 42.86 4.40 R
4139 7093 0.039035 AACACCGTGCCCCATACAAT 59.961 50.0 0.00 0.0 0.00 2.71 R
5065 8024 0.694444 AGGATGTTACCAGGGGCGAT 60.694 55.0 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 2429 3.838244 ATTATTAGCTGGGCGTTGAGA 57.162 42.857 0.00 0.00 0.00 3.27
168 2431 2.717639 ATTAGCTGGGCGTTGAGAAT 57.282 45.000 0.00 0.00 0.00 2.40
275 2538 2.083522 GCTACATCGATCTCGCCGC 61.084 63.158 0.00 0.00 39.60 6.53
276 2539 1.576920 CTACATCGATCTCGCCGCT 59.423 57.895 0.00 0.00 39.60 5.52
285 2548 4.605967 CTCGCCGCTCGCTCTCTC 62.606 72.222 0.00 0.00 38.27 3.20
297 2560 2.362397 TCGCTCTCTCTCTCTCTCTCTC 59.638 54.545 0.00 0.00 0.00 3.20
298 2561 2.363680 CGCTCTCTCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
299 2562 3.551863 CGCTCTCTCTCTCTCTCTCTCTC 60.552 56.522 0.00 0.00 0.00 3.20
300 2563 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
301 2564 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
302 2565 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
303 2566 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
304 2567 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
305 2568 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
306 2569 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
307 2570 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
308 2571 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
309 2572 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
310 2573 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
311 2574 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
312 2575 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
313 2576 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
314 2577 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
315 2578 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
316 2579 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
317 2580 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
318 2581 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
319 2582 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
320 2583 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
321 2584 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
322 2585 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
639 2902 3.036959 TCTCCCTCCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
640 2903 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
641 2904 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
642 2905 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
643 2906 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
644 2907 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
645 2908 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
656 2919 2.507992 CTCCCTCTCTGTTGCGCG 60.508 66.667 0.00 0.00 0.00 6.86
770 3350 1.061131 CGCCGCAGATTTGTAAGTCTG 59.939 52.381 11.44 11.44 43.62 3.51
794 3374 8.027440 TGCCATTTTTGCTGAAATACAATAAC 57.973 30.769 0.00 0.00 0.00 1.89
904 3592 0.599060 CATGGTGCATGCTGTTCACA 59.401 50.000 20.33 8.88 35.02 3.58
905 3593 0.599558 ATGGTGCATGCTGTTCACAC 59.400 50.000 20.33 6.38 32.69 3.82
1076 3764 1.244019 AATGCAGAGCCCGTGAAACC 61.244 55.000 0.00 0.00 0.00 3.27
1120 3808 3.489180 TCACGAATCGTTTCTCTCCTC 57.511 47.619 5.20 0.00 38.32 3.71
1135 3823 2.771943 TCTCCTCATAACCAAATCGGCT 59.228 45.455 0.00 0.00 39.03 5.52
1593 4395 8.612619 ACTTTGCATTCCTAGATTTACATTACG 58.387 33.333 0.00 0.00 0.00 3.18
1680 4483 6.667848 TGTATCTACTGGACTTGAATGGAGAA 59.332 38.462 0.00 0.00 0.00 2.87
1682 4485 6.433847 TCTACTGGACTTGAATGGAGAAAA 57.566 37.500 0.00 0.00 0.00 2.29
1684 4487 4.792068 ACTGGACTTGAATGGAGAAAACA 58.208 39.130 0.00 0.00 0.00 2.83
1709 4512 8.260818 CACTATCGAATAATCAGGGGAATATGT 58.739 37.037 0.00 0.00 0.00 2.29
1832 4635 2.257034 GGTCTATCACGGTGTTTCGAC 58.743 52.381 8.17 10.16 0.00 4.20
1855 4658 1.342174 AGGGCAAACAAGTGCATTCAG 59.658 47.619 0.00 0.00 46.81 3.02
1885 4688 9.120538 ACAAATATTTCTATCACGGTAAGCAAT 57.879 29.630 0.00 0.00 0.00 3.56
1902 4705 9.788960 GGTAAGCAATCCTCTTAAAAGTTATTG 57.211 33.333 0.00 0.00 0.00 1.90
1982 4785 6.150140 ACTTCATAAATCTTGCAACAGAGGAC 59.850 38.462 0.00 0.00 0.00 3.85
1988 4791 5.796424 ATCTTGCAACAGAGGACATTTTT 57.204 34.783 0.00 0.00 0.00 1.94
2116 4919 5.472137 TGAGAAGGTAACAACAAGTTATGCC 59.528 40.000 0.00 0.00 44.06 4.40
2195 4998 8.994170 GTTTAGCAAATATCTCTCCTCCATTAC 58.006 37.037 0.00 0.00 0.00 1.89
2412 5222 5.241403 TGGTACATTCTCTTGGATTGTGT 57.759 39.130 0.00 0.00 38.49 3.72
2800 5621 4.320275 GCTAAGGTTCCAGGTTTTCTTTCG 60.320 45.833 0.00 0.00 0.00 3.46
2811 5632 0.958382 TTTCTTTCGTGCCCCCATCG 60.958 55.000 0.00 0.00 0.00 3.84
2859 5680 8.125728 ACATTAGTTGGTTTTCACAAAAATCG 57.874 30.769 0.00 0.00 38.15 3.34
2868 5689 8.244802 TGGTTTTCACAAAAATCGTTCTTCTTA 58.755 29.630 0.00 0.00 38.15 2.10
2897 5718 6.192234 ACTATAGTATCGGTGCTAAATCCG 57.808 41.667 2.75 0.00 46.93 4.18
2898 5719 2.814280 AGTATCGGTGCTAAATCCGG 57.186 50.000 0.00 0.00 45.79 5.14
2913 5734 1.531423 TCCGGCATATCTCGAGGTAC 58.469 55.000 13.56 0.00 0.00 3.34
2917 5738 1.245732 GCATATCTCGAGGTACGGGT 58.754 55.000 13.56 0.00 43.73 5.28
2930 5751 0.259647 TACGGGTCCTAAGCTAGGCA 59.740 55.000 0.00 0.00 45.82 4.75
2970 5791 3.433306 TGGACACAGGATTTTACCCAG 57.567 47.619 0.00 0.00 0.00 4.45
2974 5795 4.640647 GGACACAGGATTTTACCCAGATTC 59.359 45.833 0.00 0.00 0.00 2.52
2975 5796 5.253330 GACACAGGATTTTACCCAGATTCA 58.747 41.667 0.00 0.00 0.00 2.57
2977 5798 5.014123 ACACAGGATTTTACCCAGATTCAGA 59.986 40.000 0.00 0.00 0.00 3.27
3008 5829 5.642491 CGAAGAGATGATATACCCTACGTCA 59.358 44.000 0.00 0.00 0.00 4.35
3011 5832 6.486056 AGAGATGATATACCCTACGTCATGT 58.514 40.000 0.00 0.00 30.24 3.21
3078 5899 3.770666 ACCGTGAGATTGTTGATCTACG 58.229 45.455 2.86 0.00 45.17 3.51
3092 5913 7.478322 TGTTGATCTACGTTGTAATCCTCTAC 58.522 38.462 0.00 0.00 0.00 2.59
3098 5919 5.979288 ACGTTGTAATCCTCTACTGACTT 57.021 39.130 0.00 0.00 0.00 3.01
3112 5933 3.959991 GACTTGCCTGGCCTCGGTC 62.960 68.421 17.53 14.17 0.00 4.79
3125 5946 3.195825 GGCCTCGGTCTATATAATGCACT 59.804 47.826 0.00 0.00 0.00 4.40
3127 5948 4.082190 GCCTCGGTCTATATAATGCACTGA 60.082 45.833 0.00 0.00 0.00 3.41
3131 5952 5.538813 TCGGTCTATATAATGCACTGAAGGT 59.461 40.000 0.00 0.00 0.00 3.50
3233 6055 1.408127 CCATTAGTGAACCGCCATGGA 60.408 52.381 18.40 0.00 42.00 3.41
3277 6100 0.179161 GGGAGACGACGTGATGAGTG 60.179 60.000 4.58 0.00 0.00 3.51
3384 6207 6.037172 CACCCACTACAAGAAACTATGCATAC 59.963 42.308 1.16 0.00 0.00 2.39
3448 6272 6.653273 TTTGTGACGAAATTTTTGCATCAA 57.347 29.167 0.00 0.00 0.00 2.57
3557 6382 6.558771 TCATCATATAATTTTGTCCGGCAG 57.441 37.500 0.00 0.00 0.00 4.85
3562 6387 1.255882 AATTTTGTCCGGCAGCATCA 58.744 45.000 0.00 0.00 0.00 3.07
3647 6486 8.965172 CGTTGATGTTGTATAGGTATGTAAGAC 58.035 37.037 0.00 0.00 0.00 3.01
3728 6575 7.761409 TGATCTGACCTTTAATTATGTGTTGC 58.239 34.615 0.00 0.00 0.00 4.17
3754 6602 9.034544 CGATCTCAAATTACATACATTGACTCA 57.965 33.333 0.00 0.00 0.00 3.41
3763 6611 4.142315 ACATACATTGACTCATTTGGCTGC 60.142 41.667 0.00 0.00 0.00 5.25
3813 6661 3.323774 AATACATACTCCCTCCGTCCA 57.676 47.619 0.00 0.00 0.00 4.02
3821 6669 0.685097 TCCCTCCGTCCAGTGAAAAG 59.315 55.000 0.00 0.00 0.00 2.27
3830 6678 4.387862 CCGTCCAGTGAAAAGTGTACATAC 59.612 45.833 0.00 0.00 0.00 2.39
3862 6710 8.553153 TGTTAGGACAAATTATGGATTGGAGTA 58.447 33.333 0.00 0.00 31.49 2.59
3898 6746 2.475666 GTGCAAGCCACCATCTCTC 58.524 57.895 0.00 0.00 38.55 3.20
3973 6821 6.319658 AGGAAACCATGTGTAGAATGCTATTG 59.680 38.462 0.00 0.00 0.00 1.90
3974 6822 6.455360 AAACCATGTGTAGAATGCTATTGG 57.545 37.500 0.00 0.00 0.00 3.16
3975 6823 5.116084 ACCATGTGTAGAATGCTATTGGT 57.884 39.130 0.00 3.09 0.00 3.67
3976 6824 5.126067 ACCATGTGTAGAATGCTATTGGTC 58.874 41.667 0.00 0.00 29.85 4.02
3978 6826 6.099701 ACCATGTGTAGAATGCTATTGGTCTA 59.900 38.462 0.00 0.00 29.85 2.59
3979 6827 6.648310 CCATGTGTAGAATGCTATTGGTCTAG 59.352 42.308 0.00 0.00 0.00 2.43
3981 6829 7.603180 TGTGTAGAATGCTATTGGTCTAGAT 57.397 36.000 0.00 0.00 0.00 1.98
3982 6830 8.023021 TGTGTAGAATGCTATTGGTCTAGATT 57.977 34.615 0.00 0.00 0.00 2.40
3983 6831 9.143155 TGTGTAGAATGCTATTGGTCTAGATTA 57.857 33.333 0.00 0.00 0.00 1.75
3984 6832 9.413048 GTGTAGAATGCTATTGGTCTAGATTAC 57.587 37.037 0.00 0.00 0.00 1.89
3985 6833 8.585881 TGTAGAATGCTATTGGTCTAGATTACC 58.414 37.037 0.00 0.00 37.53 2.85
3986 6834 6.692486 AGAATGCTATTGGTCTAGATTACCG 58.308 40.000 0.00 0.00 40.08 4.02
3987 6835 6.267928 AGAATGCTATTGGTCTAGATTACCGT 59.732 38.462 0.00 0.00 40.08 4.83
3988 6836 5.196341 TGCTATTGGTCTAGATTACCGTG 57.804 43.478 0.00 0.00 40.08 4.94
3991 6839 5.221185 GCTATTGGTCTAGATTACCGTGTGA 60.221 44.000 0.00 0.00 40.08 3.58
3992 6840 5.871396 ATTGGTCTAGATTACCGTGTGAT 57.129 39.130 0.00 0.00 40.08 3.06
3993 6841 4.649088 TGGTCTAGATTACCGTGTGATG 57.351 45.455 0.00 0.00 40.08 3.07
3995 6843 4.338400 TGGTCTAGATTACCGTGTGATGAG 59.662 45.833 0.00 0.00 40.08 2.90
3997 6845 5.278071 GGTCTAGATTACCGTGTGATGAGAG 60.278 48.000 0.00 0.00 0.00 3.20
3998 6846 5.527951 GTCTAGATTACCGTGTGATGAGAGA 59.472 44.000 0.00 0.00 0.00 3.10
3999 6847 4.909696 AGATTACCGTGTGATGAGAGAG 57.090 45.455 0.00 0.00 0.00 3.20
4001 6849 4.950475 AGATTACCGTGTGATGAGAGAGAA 59.050 41.667 0.00 0.00 0.00 2.87
4002 6850 5.419155 AGATTACCGTGTGATGAGAGAGAAA 59.581 40.000 0.00 0.00 0.00 2.52
4003 6851 5.661056 TTACCGTGTGATGAGAGAGAAAT 57.339 39.130 0.00 0.00 0.00 2.17
4005 6853 5.860941 ACCGTGTGATGAGAGAGAAATAT 57.139 39.130 0.00 0.00 0.00 1.28
4006 6854 6.227298 ACCGTGTGATGAGAGAGAAATATT 57.773 37.500 0.00 0.00 0.00 1.28
4008 6856 6.097554 ACCGTGTGATGAGAGAGAAATATTCT 59.902 38.462 0.00 0.00 44.21 2.40
4010 6858 7.493971 CCGTGTGATGAGAGAGAAATATTCTTT 59.506 37.037 0.00 0.00 40.87 2.52
4056 7010 8.035394 GGAAGATAGATGTACACTCTTTTGTGA 58.965 37.037 0.00 0.00 40.12 3.58
4076 7030 7.672983 TGTGAACAAATTTTAAAGCCAAACA 57.327 28.000 0.00 0.00 0.00 2.83
4089 7043 8.874744 TTAAAGCCAAACATACACTTTTTACC 57.125 30.769 0.00 0.00 33.01 2.85
4094 7048 4.996062 AACATACACTTTTTACCGGACG 57.004 40.909 9.46 0.00 0.00 4.79
4364 7319 4.755123 CCAAATACAGGGGACATAATCGAC 59.245 45.833 0.00 0.00 0.00 4.20
4372 7327 2.213499 GGACATAATCGACAGGCTTGG 58.787 52.381 0.00 0.00 0.00 3.61
4437 7392 4.318332 CAGTTCATCAGTTGAGCAGGTTA 58.682 43.478 0.00 0.00 37.98 2.85
4525 7480 7.282675 TCGTGTTGGAGACCTTTTGTAAATTAA 59.717 33.333 0.00 0.00 0.00 1.40
4599 7557 6.650120 TCTTTGTTAGAGTCACAAGAAGGTT 58.350 36.000 0.00 0.00 35.57 3.50
4663 7621 5.953548 TGGAGATCATTCAACATTGATGGTT 59.046 36.000 0.00 0.00 37.00 3.67
4691 7649 4.734398 AGTTCACAGAGGCTGAGATTAG 57.266 45.455 0.00 0.00 31.85 1.73
4751 7709 0.442699 GGCTTCGCAGAAGTTTACCG 59.557 55.000 16.09 0.00 45.90 4.02
4956 7915 3.688673 GCCTCAGAGAAGTTCTTGATTGG 59.311 47.826 6.88 11.27 32.41 3.16
5005 7964 3.450904 AGGTTGGGTATTGCTCTAGACA 58.549 45.455 0.00 0.00 0.00 3.41
5068 8027 2.543848 CCAACCATTCACGGTGATATCG 59.456 50.000 12.26 4.40 39.95 2.92
5069 8028 1.865865 ACCATTCACGGTGATATCGC 58.134 50.000 12.26 7.79 38.07 4.58
5070 8029 1.148310 CCATTCACGGTGATATCGCC 58.852 55.000 23.14 23.14 42.91 5.54
5115 8074 9.301153 GATGATAACTTTGGTGCGAAATTATTT 57.699 29.630 0.00 0.00 0.00 1.40
5170 8129 5.793817 ACAGCACTCAATACACACTGAATA 58.206 37.500 0.00 0.00 0.00 1.75
5181 8140 9.710900 CAATACACACTGAATATAATAGGCAGA 57.289 33.333 0.00 0.00 0.00 4.26
5204 8163 6.325545 AGAATAGGTTACATGGATCCGTTGTA 59.674 38.462 18.61 18.61 0.00 2.41
5211 8170 3.181451 ACATGGATCCGTTGTATGCTCAT 60.181 43.478 16.33 0.00 0.00 2.90
5213 8172 4.681074 TGGATCCGTTGTATGCTCATAA 57.319 40.909 7.39 0.00 0.00 1.90
5224 8183 2.732844 TGCTCATAATGGGTGCATCA 57.267 45.000 0.00 0.00 0.00 3.07
5318 8280 1.377994 GGAGCATGGGCCTCATAGG 59.622 63.158 4.53 0.00 42.56 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 2429 4.789075 CCGCCGTCGACCGTCATT 62.789 66.667 10.58 0.00 38.10 2.57
275 2538 2.363680 AGAGAGAGAGAGAGAGAGCGAG 59.636 54.545 0.00 0.00 0.00 5.03
276 2539 2.362397 GAGAGAGAGAGAGAGAGAGCGA 59.638 54.545 0.00 0.00 0.00 4.93
285 2548 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
297 2560 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
298 2561 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
299 2562 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
300 2563 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
622 2885 3.036959 GGGAGGGAGGGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
623 2886 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
624 2887 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
625 2888 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
626 2889 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
627 2890 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
628 2891 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
629 2892 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
630 2893 2.018086 AGAGAGGGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
631 2894 1.232792 CAGAGAGGGAGGGAGGGAG 59.767 68.421 0.00 0.00 0.00 4.30
632 2895 1.156322 AACAGAGAGGGAGGGAGGGA 61.156 60.000 0.00 0.00 0.00 4.20
633 2896 0.980231 CAACAGAGAGGGAGGGAGGG 60.980 65.000 0.00 0.00 0.00 4.30
634 2897 1.621672 GCAACAGAGAGGGAGGGAGG 61.622 65.000 0.00 0.00 0.00 4.30
635 2898 1.904032 GCAACAGAGAGGGAGGGAG 59.096 63.158 0.00 0.00 0.00 4.30
636 2899 1.984570 CGCAACAGAGAGGGAGGGA 60.985 63.158 0.00 0.00 0.00 4.20
637 2900 2.581354 CGCAACAGAGAGGGAGGG 59.419 66.667 0.00 0.00 0.00 4.30
638 2901 2.125350 GCGCAACAGAGAGGGAGG 60.125 66.667 0.30 0.00 0.00 4.30
639 2902 2.507992 CGCGCAACAGAGAGGGAG 60.508 66.667 8.75 0.00 0.00 4.30
640 2903 4.069232 CCGCGCAACAGAGAGGGA 62.069 66.667 8.75 0.00 0.00 4.20
642 2905 3.376935 ATCCCGCGCAACAGAGAGG 62.377 63.158 8.75 0.00 0.00 3.69
643 2906 2.169789 CATCCCGCGCAACAGAGAG 61.170 63.158 8.75 0.00 0.00 3.20
644 2907 2.125552 CATCCCGCGCAACAGAGA 60.126 61.111 8.75 0.00 0.00 3.10
645 2908 3.869272 GCATCCCGCGCAACAGAG 61.869 66.667 8.75 0.00 0.00 3.35
656 2919 1.824230 AGATCAGATCTAGCGCATCCC 59.176 52.381 11.57 0.00 38.00 3.85
770 3350 8.255394 AGTTATTGTATTTCAGCAAAAATGGC 57.745 30.769 6.58 0.00 31.50 4.40
794 3374 6.538742 TGAAAGTTTCAGTCCAACTTCACTAG 59.461 38.462 14.35 0.00 42.47 2.57
904 3592 4.578928 ACTGTTGAGGAAATTAAACTGCGT 59.421 37.500 0.00 0.00 0.00 5.24
905 3593 5.108385 ACTGTTGAGGAAATTAAACTGCG 57.892 39.130 0.00 0.00 0.00 5.18
1076 3764 3.997021 GTCCTCCAATAGTGATAATGGCG 59.003 47.826 0.00 0.00 32.87 5.69
1120 3808 2.285083 TCCGAAGCCGATTTGGTTATG 58.715 47.619 2.53 0.00 42.52 1.90
1135 3823 2.281208 CACCGCAAACCCTCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
1563 4362 9.632638 ATGTAAATCTAGGAATGCAAAGTACAT 57.367 29.630 0.00 0.00 0.00 2.29
1638 4440 5.076873 AGATACATCTGAAGAGGAGGTAGC 58.923 45.833 0.00 0.00 36.87 3.58
1680 4483 6.494666 TCCCCTGATTATTCGATAGTGTTT 57.505 37.500 0.00 0.00 37.40 2.83
1682 4485 6.688073 ATTCCCCTGATTATTCGATAGTGT 57.312 37.500 0.00 0.00 37.40 3.55
1684 4487 8.260818 CACATATTCCCCTGATTATTCGATAGT 58.739 37.037 0.00 0.00 37.40 2.12
1709 4512 4.907269 TGATGAAGATAATGTAGCCCCTCA 59.093 41.667 0.00 0.00 0.00 3.86
1821 4624 2.664436 GCCCTTCGTCGAAACACCG 61.664 63.158 9.30 0.00 0.00 4.94
1832 4635 0.314935 ATGCACTTGTTTGCCCTTCG 59.685 50.000 0.00 0.00 42.25 3.79
1855 4658 9.916397 CTTACCGTGATAGAAATATTTGTTCAC 57.084 33.333 19.34 19.34 0.00 3.18
1902 4705 7.671495 AATAATTTTTGCCACCAATGAGAAC 57.329 32.000 0.00 0.00 0.00 3.01
1982 4785 5.555017 TCTCAGGAGTTCTGGAGAAAAATG 58.445 41.667 0.00 0.00 43.53 2.32
1988 4791 1.996291 TCCTCTCAGGAGTTCTGGAGA 59.004 52.381 15.07 8.68 40.06 3.71
2053 4856 7.402054 TCTTCTCTCCTATCAGTATCTCCATC 58.598 42.308 0.00 0.00 0.00 3.51
2116 4919 2.932614 CCTTCGACTAACTTGGAGCATG 59.067 50.000 0.00 0.00 0.00 4.06
2195 4998 7.497909 CCTACCACCTTGTATTTGTATTAGTGG 59.502 40.741 0.00 0.00 46.06 4.00
2242 5045 5.874810 TGAGTGGTTGCTGAAAGTATGTATC 59.125 40.000 0.00 0.00 35.30 2.24
2309 5112 7.502226 TCTCTCACTAACCACACAAATGATTTT 59.498 33.333 0.00 0.00 0.00 1.82
2317 5125 5.607939 TTCTTCTCTCACTAACCACACAA 57.392 39.130 0.00 0.00 0.00 3.33
2383 5191 8.906867 CAATCCAAGAGAATGTACCAACATATT 58.093 33.333 0.00 0.00 45.79 1.28
2412 5222 3.671008 AGGAAGTGTACACGTGCAATA 57.329 42.857 28.87 0.00 34.02 1.90
2504 5321 6.839124 ATCAAAATCACATAGCTTGGAACA 57.161 33.333 0.00 0.00 0.00 3.18
2505 5322 7.276438 GGAAATCAAAATCACATAGCTTGGAAC 59.724 37.037 0.00 0.00 0.00 3.62
2506 5323 7.178983 AGGAAATCAAAATCACATAGCTTGGAA 59.821 33.333 0.00 0.00 0.00 3.53
2507 5324 6.664816 AGGAAATCAAAATCACATAGCTTGGA 59.335 34.615 0.00 0.00 0.00 3.53
2800 5621 0.468029 ATCAAATCCGATGGGGGCAC 60.468 55.000 0.00 0.00 36.01 5.01
2811 5632 8.378172 TGTTAATCGTCCAGAATATCAAATCC 57.622 34.615 0.00 0.00 0.00 3.01
2839 5660 6.394809 AGAACGATTTTTGTGAAAACCAACT 58.605 32.000 0.00 0.00 37.56 3.16
2897 5718 0.526662 CCCGTACCTCGAGATATGCC 59.473 60.000 15.71 0.00 42.86 4.40
2898 5719 1.199558 GACCCGTACCTCGAGATATGC 59.800 57.143 15.71 1.61 42.86 3.14
2930 5751 4.588951 TCCATGTTACCATCGCTCTAAGAT 59.411 41.667 0.00 0.00 0.00 2.40
2993 5814 8.603242 ATCAAAAACATGACGTAGGGTATATC 57.397 34.615 0.00 0.00 30.82 1.63
2996 5817 6.657541 ACAATCAAAAACATGACGTAGGGTAT 59.342 34.615 0.00 0.00 30.82 2.73
3041 5862 7.059202 TCTCACGGTAGATACATGTACTCTA 57.941 40.000 7.96 12.88 0.00 2.43
3050 5871 5.907866 TCAACAATCTCACGGTAGATACA 57.092 39.130 2.60 0.00 35.10 2.29
3060 5881 7.576750 TTACAACGTAGATCAACAATCTCAC 57.423 36.000 0.00 0.00 43.90 3.51
3078 5899 4.870991 GGCAAGTCAGTAGAGGATTACAAC 59.129 45.833 0.00 0.00 0.00 3.32
3092 5913 2.435586 CGAGGCCAGGCAAGTCAG 60.436 66.667 15.19 0.09 0.00 3.51
3098 5919 0.178932 ATATAGACCGAGGCCAGGCA 60.179 55.000 15.19 3.67 0.00 4.75
3112 5933 7.179338 ACCCTAGACCTTCAGTGCATTATATAG 59.821 40.741 0.00 0.00 0.00 1.31
3125 5946 5.652324 ACTCTTCTAAACCCTAGACCTTCA 58.348 41.667 0.00 0.00 0.00 3.02
3127 5948 5.024785 GGACTCTTCTAAACCCTAGACCTT 58.975 45.833 0.00 0.00 0.00 3.50
3131 5952 5.799978 AGAGGACTCTTCTAAACCCTAGA 57.200 43.478 0.00 0.00 36.31 2.43
3162 5983 7.230027 AGAAGGAAGATTTCACAAGACTTGAT 58.770 34.615 21.95 4.53 0.00 2.57
3163 5984 6.595682 AGAAGGAAGATTTCACAAGACTTGA 58.404 36.000 21.95 0.00 0.00 3.02
3175 5996 5.773680 CCCATGATGCATAGAAGGAAGATTT 59.226 40.000 0.00 0.00 0.00 2.17
3206 6027 1.737793 CGGTTCACTAATGGCCACTTC 59.262 52.381 8.16 0.00 0.00 3.01
3218 6040 1.296715 GACTCCATGGCGGTTCACT 59.703 57.895 6.96 0.00 35.57 3.41
3233 6055 1.380112 GTGGGTCTAGCCGAGGACT 60.380 63.158 0.00 0.00 38.44 3.85
3277 6100 0.178955 GGAGTCCTAGACTAGGGGGC 60.179 65.000 25.35 16.45 43.53 5.80
3347 6170 3.890756 TGTAGTGGGTGACTAGAAAACGA 59.109 43.478 0.00 0.00 37.87 3.85
3358 6181 4.041075 TGCATAGTTTCTTGTAGTGGGTGA 59.959 41.667 0.00 0.00 0.00 4.02
3407 6231 7.326063 CGTCACAAAATATATCTAGTGATGCGA 59.674 37.037 15.02 0.00 38.16 5.10
3448 6272 7.538678 GCGAGTCATGTTACATGAAGAAAATTT 59.461 33.333 26.87 7.77 0.00 1.82
3552 6377 1.434622 GGTCATCTGTGATGCTGCCG 61.435 60.000 0.00 0.00 36.60 5.69
3611 6437 2.687935 ACAACATCAACGCTCCAACTTT 59.312 40.909 0.00 0.00 0.00 2.66
3622 6448 9.257651 GGTCTTACATACCTATACAACATCAAC 57.742 37.037 0.00 0.00 33.97 3.18
3728 6575 9.034544 TGAGTCAATGTATGTAATTTGAGATCG 57.965 33.333 0.00 0.00 0.00 3.69
3763 6611 5.581126 TGTTTGCAAGAAGGCCATATTAG 57.419 39.130 5.01 0.00 0.00 1.73
3813 6661 8.677148 ACATTTCTGTATGTACACTTTTCACT 57.323 30.769 0.00 0.00 36.99 3.41
3821 6669 8.542497 TTGTCCTAACATTTCTGTATGTACAC 57.458 34.615 0.00 0.00 37.76 2.90
3869 6717 0.681175 GGCTTGCACCTTTCCAATGT 59.319 50.000 0.00 0.00 0.00 2.71
3898 6746 5.850028 TGGGGGTAGGATAATTAAAGAGGAG 59.150 44.000 0.00 0.00 0.00 3.69
3973 6821 4.579340 TCTCATCACACGGTAATCTAGACC 59.421 45.833 0.00 0.00 0.00 3.85
3974 6822 5.527951 TCTCTCATCACACGGTAATCTAGAC 59.472 44.000 0.00 0.00 0.00 2.59
3975 6823 5.681639 TCTCTCATCACACGGTAATCTAGA 58.318 41.667 0.00 0.00 0.00 2.43
3976 6824 5.760743 TCTCTCTCATCACACGGTAATCTAG 59.239 44.000 0.00 0.00 0.00 2.43
3978 6826 4.527944 TCTCTCTCATCACACGGTAATCT 58.472 43.478 0.00 0.00 0.00 2.40
3979 6827 4.902443 TCTCTCTCATCACACGGTAATC 57.098 45.455 0.00 0.00 0.00 1.75
3981 6829 5.661056 ATTTCTCTCTCATCACACGGTAA 57.339 39.130 0.00 0.00 0.00 2.85
3982 6830 6.961360 ATATTTCTCTCTCATCACACGGTA 57.039 37.500 0.00 0.00 0.00 4.02
3983 6831 5.860941 ATATTTCTCTCTCATCACACGGT 57.139 39.130 0.00 0.00 0.00 4.83
3984 6832 6.511416 AGAATATTTCTCTCTCATCACACGG 58.489 40.000 0.00 0.00 34.07 4.94
3985 6833 8.417780 AAAGAATATTTCTCTCTCATCACACG 57.582 34.615 0.00 0.00 39.61 4.49
4005 6853 9.434420 CCCAATGCACATTAAAATAGAAAAGAA 57.566 29.630 0.00 0.00 0.00 2.52
4006 6854 8.811017 TCCCAATGCACATTAAAATAGAAAAGA 58.189 29.630 0.00 0.00 0.00 2.52
4008 6856 9.434420 CTTCCCAATGCACATTAAAATAGAAAA 57.566 29.630 0.00 0.00 0.00 2.29
4010 6858 8.359875 TCTTCCCAATGCACATTAAAATAGAA 57.640 30.769 0.00 0.00 0.00 2.10
4012 6860 9.903682 CTATCTTCCCAATGCACATTAAAATAG 57.096 33.333 0.00 0.00 0.00 1.73
4013 6861 9.639563 TCTATCTTCCCAATGCACATTAAAATA 57.360 29.630 0.00 0.00 0.00 1.40
4015 6863 7.953005 TCTATCTTCCCAATGCACATTAAAA 57.047 32.000 0.00 0.00 0.00 1.52
4016 6864 7.560991 ACATCTATCTTCCCAATGCACATTAAA 59.439 33.333 0.00 0.00 0.00 1.52
4021 6869 4.508551 ACATCTATCTTCCCAATGCACA 57.491 40.909 0.00 0.00 0.00 4.57
4023 6871 5.130975 AGTGTACATCTATCTTCCCAATGCA 59.869 40.000 0.00 0.00 0.00 3.96
4024 6872 5.615289 AGTGTACATCTATCTTCCCAATGC 58.385 41.667 0.00 0.00 0.00 3.56
4025 6873 7.060383 AGAGTGTACATCTATCTTCCCAATG 57.940 40.000 0.00 0.00 0.00 2.82
4026 6874 7.682787 AAGAGTGTACATCTATCTTCCCAAT 57.317 36.000 0.00 0.00 0.00 3.16
4027 6875 7.496346 AAAGAGTGTACATCTATCTTCCCAA 57.504 36.000 0.00 0.00 30.16 4.12
4028 6876 7.038302 ACAAAAGAGTGTACATCTATCTTCCCA 60.038 37.037 0.00 0.00 30.16 4.37
4029 6877 7.278868 CACAAAAGAGTGTACATCTATCTTCCC 59.721 40.741 0.00 0.00 34.83 3.97
4056 7010 9.389755 AGTGTATGTTTGGCTTTAAAATTTGTT 57.610 25.926 0.00 0.00 0.00 2.83
4076 7030 3.368739 CCTCCGTCCGGTAAAAAGTGTAT 60.369 47.826 0.00 0.00 36.47 2.29
4086 7040 0.179009 CATACTCCCTCCGTCCGGTA 60.179 60.000 0.00 0.00 36.47 4.02
4089 7043 0.950116 GTACATACTCCCTCCGTCCG 59.050 60.000 0.00 0.00 0.00 4.79
4094 7048 3.429960 GGTTTCACGTACATACTCCCTCC 60.430 52.174 0.00 0.00 0.00 4.30
4135 7089 0.179032 CCGTGCCCCATACAATAGCA 60.179 55.000 0.00 0.00 0.00 3.49
4139 7093 0.039035 AACACCGTGCCCCATACAAT 59.961 50.000 0.00 0.00 0.00 2.71
4289 7244 5.925509 TCTGTCCCTATTTTAGTGCATACC 58.074 41.667 0.00 0.00 0.00 2.73
4364 7319 4.039124 ACAATTCCTGTTTTACCAAGCCTG 59.961 41.667 0.00 0.00 32.99 4.85
4372 7327 8.106247 TGAATAGTCCACAATTCCTGTTTTAC 57.894 34.615 0.00 0.00 35.47 2.01
4437 7392 4.931661 TCTTGAGACCGTTCAGTAAACT 57.068 40.909 0.00 0.00 35.59 2.66
4525 7480 9.794685 GAGATCAAGAAAAGTGAAAGAAAAGTT 57.205 29.630 0.00 0.00 0.00 2.66
4599 7557 2.477245 TGGATAAGGTCTGCAGGCTTA 58.523 47.619 19.48 14.42 0.00 3.09
4663 7621 4.776349 TCAGCCTCTGTGAACTTGTTTAA 58.224 39.130 0.00 0.00 32.61 1.52
4691 7649 5.751028 GTGCTATAGTTGTCAGTGATCCTTC 59.249 44.000 0.00 0.00 0.00 3.46
4751 7709 4.642429 ACTACCATCTTCAAGAACACCAC 58.358 43.478 0.00 0.00 0.00 4.16
4956 7915 9.838339 TGATCTAAAGAAATGGGATAGTCTTTC 57.162 33.333 1.04 0.00 40.08 2.62
5065 8024 0.694444 AGGATGTTACCAGGGGCGAT 60.694 55.000 0.00 0.00 0.00 4.58
5068 8027 2.231716 AAAAGGATGTTACCAGGGGC 57.768 50.000 0.00 0.00 0.00 5.80
5069 8028 4.855298 TCTAAAAGGATGTTACCAGGGG 57.145 45.455 0.00 0.00 0.00 4.79
5070 8029 6.001449 TCATCTAAAAGGATGTTACCAGGG 57.999 41.667 0.00 0.00 42.45 4.45
5115 8074 3.967326 ACATTCTGGATATCCCGAAGTCA 59.033 43.478 26.48 10.32 41.45 3.41
5170 8129 8.449423 TCCATGTAACCTATTCTGCCTATTAT 57.551 34.615 0.00 0.00 0.00 1.28
5181 8140 5.367945 ACAACGGATCCATGTAACCTATT 57.632 39.130 16.48 0.00 0.00 1.73
5211 8170 3.118075 TCTTCGGATTGATGCACCCATTA 60.118 43.478 0.00 0.00 0.00 1.90
5213 8172 1.212688 TCTTCGGATTGATGCACCCAT 59.787 47.619 0.00 0.00 0.00 4.00
5224 8183 5.794894 ACTGTAAACATCACTCTTCGGATT 58.205 37.500 0.00 0.00 0.00 3.01
5318 8280 3.214328 TGAACAGCTTGGGAGAAAGTTC 58.786 45.455 0.00 0.00 33.68 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.