Multiple sequence alignment - TraesCS2A01G060900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G060900 chr2A 100.000 3101 0 0 1 3101 27370008 27373108 0.000000e+00 5727.0
1 TraesCS2A01G060900 chr2A 98.113 159 3 0 891 1049 658746935 658746777 8.470000e-71 278.0
2 TraesCS2A01G060900 chr1A 95.833 1104 39 6 2001 3101 586834619 586835718 0.000000e+00 1777.0
3 TraesCS2A01G060900 chr1A 93.201 809 37 7 2308 3101 12602368 12603173 0.000000e+00 1173.0
4 TraesCS2A01G060900 chr7A 95.005 1061 48 4 2043 3101 697069247 697070304 0.000000e+00 1661.0
5 TraesCS2A01G060900 chr7A 93.688 808 30 9 2308 3101 25710925 25711725 0.000000e+00 1190.0
6 TraesCS2A01G060900 chr7A 92.813 807 41 7 2308 3099 38794947 38795751 0.000000e+00 1153.0
7 TraesCS2A01G060900 chr7A 95.248 463 22 0 2004 2466 2602730 2602268 0.000000e+00 734.0
8 TraesCS2A01G060900 chr7A 95.415 458 21 0 2003 2460 25710394 25710851 0.000000e+00 730.0
9 TraesCS2A01G060900 chr7A 77.548 775 149 16 1052 1815 63307185 63307945 7.890000e-121 444.0
10 TraesCS2A01G060900 chr7A 96.835 158 5 0 891 1048 100885108 100885265 6.590000e-67 265.0
11 TraesCS2A01G060900 chr7A 92.500 160 12 0 889 1048 699095502 699095661 2.410000e-56 230.0
12 TraesCS2A01G060900 chrUn 93.720 1035 42 8 2070 3101 357993534 357994548 0.000000e+00 1530.0
13 TraesCS2A01G060900 chr4A 91.931 1103 65 12 2003 3101 593635020 593636102 0.000000e+00 1522.0
14 TraesCS2A01G060900 chr4A 92.432 185 12 2 1 185 191162469 191162651 2.370000e-66 263.0
15 TraesCS2A01G060900 chr2D 93.444 961 57 2 1049 2003 24936138 24937098 0.000000e+00 1421.0
16 TraesCS2A01G060900 chr2D 90.734 259 14 4 632 889 24935895 24936144 1.380000e-88 337.0
17 TraesCS2A01G060900 chr2D 92.432 185 12 2 1 184 44611851 44611668 2.370000e-66 263.0
18 TraesCS2A01G060900 chr2D 90.323 186 16 1 1 184 438015067 438014882 3.090000e-60 243.0
19 TraesCS2A01G060900 chr2D 84.211 171 24 3 1280 1449 26537431 26537263 2.470000e-36 163.0
20 TraesCS2A01G060900 chr2B 92.035 904 72 0 1049 1952 40317330 40318233 0.000000e+00 1271.0
21 TraesCS2A01G060900 chr2B 90.144 974 80 6 1049 2007 40298991 40299963 0.000000e+00 1253.0
22 TraesCS2A01G060900 chr2B 92.481 266 11 6 625 889 40298740 40298997 3.780000e-99 372.0
23 TraesCS2A01G060900 chr2B 89.928 278 21 5 189 466 40298397 40298667 4.920000e-93 351.0
24 TraesCS2A01G060900 chr2B 85.207 338 23 13 214 547 40312610 40312924 3.860000e-84 322.0
25 TraesCS2A01G060900 chr2B 91.845 233 14 3 658 889 40317108 40317336 1.390000e-83 320.0
26 TraesCS2A01G060900 chr2B 93.011 186 11 2 1 184 11607115 11607300 1.420000e-68 270.0
27 TraesCS2A01G060900 chr2B 96.429 56 2 0 1948 2003 40323293 40323348 3.290000e-15 93.5
28 TraesCS2A01G060900 chr3A 92.831 809 38 12 2308 3101 670664850 670664047 0.000000e+00 1155.0
29 TraesCS2A01G060900 chr3A 95.842 457 18 1 2004 2460 742212470 742212925 0.000000e+00 737.0
30 TraesCS2A01G060900 chr3A 95.000 460 23 0 2001 2460 660746790 660747249 0.000000e+00 723.0
31 TraesCS2A01G060900 chr5A 92.602 811 38 10 2308 3101 18086297 18085492 0.000000e+00 1146.0
32 TraesCS2A01G060900 chr6A 95.415 458 21 0 2003 2460 1990889 1991346 0.000000e+00 730.0
33 TraesCS2A01G060900 chr6A 95.000 460 22 1 2004 2463 38875413 38875871 0.000000e+00 721.0
34 TraesCS2A01G060900 chr6A 98.160 163 3 0 890 1052 608057117 608057279 5.060000e-73 285.0
35 TraesCS2A01G060900 chr6A 93.514 185 11 1 1 184 74975567 74975751 1.100000e-69 274.0
36 TraesCS2A01G060900 chr6A 91.304 184 15 1 1 184 116810572 116810390 1.850000e-62 250.0
37 TraesCS2A01G060900 chr7D 93.478 184 12 0 1 184 29308822 29309005 1.100000e-69 274.0
38 TraesCS2A01G060900 chr7D 88.710 186 16 4 1 184 479599391 479599209 4.020000e-54 222.0
39 TraesCS2A01G060900 chr7D 88.043 184 21 1 1 184 14938217 14938399 1.870000e-52 217.0
40 TraesCS2A01G060900 chr5D 93.514 185 11 1 1 184 545117554 545117370 1.100000e-69 274.0
41 TraesCS2A01G060900 chr5D 92.973 185 12 1 1 184 510564085 510564269 5.100000e-68 268.0
42 TraesCS2A01G060900 chr5D 89.189 185 19 1 1 185 528756348 528756531 2.410000e-56 230.0
43 TraesCS2A01G060900 chr5B 92.973 185 11 2 1 184 455166152 455166335 5.100000e-68 268.0
44 TraesCS2A01G060900 chr5B 92.391 184 13 1 1 184 501096966 501097148 8.530000e-66 261.0
45 TraesCS2A01G060900 chr5B 89.130 184 17 3 1 184 655194109 655194289 3.110000e-55 226.0
46 TraesCS2A01G060900 chr5B 88.764 178 18 2 1 178 397665947 397665772 1.870000e-52 217.0
47 TraesCS2A01G060900 chr5B 87.097 186 20 3 1 185 665898642 665898824 1.130000e-49 207.0
48 TraesCS2A01G060900 chr3B 92.973 185 11 2 1 183 778298438 778298254 5.100000e-68 268.0
49 TraesCS2A01G060900 chr7B 92.021 188 12 3 1 185 194116552 194116739 8.530000e-66 261.0
50 TraesCS2A01G060900 chr4B 91.444 187 13 3 1 186 561731281 561731465 1.430000e-63 254.0
51 TraesCS2A01G060900 chr1D 88.710 186 20 1 1 185 386895776 386895591 3.110000e-55 226.0
52 TraesCS2A01G060900 chr1D 82.500 160 24 4 891 1049 453569210 453569366 1.500000e-28 137.0
53 TraesCS2A01G060900 chr4D 88.021 192 20 3 1 190 399537662 399537852 1.120000e-54 224.0
54 TraesCS2A01G060900 chr4D 80.645 93 11 7 53 141 92660080 92660169 7.180000e-07 65.8
55 TraesCS2A01G060900 chr3D 87.027 185 21 2 1 184 71753363 71753181 4.050000e-49 206.0
56 TraesCS2A01G060900 chr6D 79.104 134 20 8 10 138 457594668 457594798 5.510000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G060900 chr2A 27370008 27373108 3100 False 5727.000000 5727 100.0000 1 3101 1 chr2A.!!$F1 3100
1 TraesCS2A01G060900 chr1A 586834619 586835718 1099 False 1777.000000 1777 95.8330 2001 3101 1 chr1A.!!$F2 1100
2 TraesCS2A01G060900 chr1A 12602368 12603173 805 False 1173.000000 1173 93.2010 2308 3101 1 chr1A.!!$F1 793
3 TraesCS2A01G060900 chr7A 697069247 697070304 1057 False 1661.000000 1661 95.0050 2043 3101 1 chr7A.!!$F4 1058
4 TraesCS2A01G060900 chr7A 38794947 38795751 804 False 1153.000000 1153 92.8130 2308 3099 1 chr7A.!!$F1 791
5 TraesCS2A01G060900 chr7A 25710394 25711725 1331 False 960.000000 1190 94.5515 2003 3101 2 chr7A.!!$F6 1098
6 TraesCS2A01G060900 chr7A 63307185 63307945 760 False 444.000000 444 77.5480 1052 1815 1 chr7A.!!$F2 763
7 TraesCS2A01G060900 chrUn 357993534 357994548 1014 False 1530.000000 1530 93.7200 2070 3101 1 chrUn.!!$F1 1031
8 TraesCS2A01G060900 chr4A 593635020 593636102 1082 False 1522.000000 1522 91.9310 2003 3101 1 chr4A.!!$F2 1098
9 TraesCS2A01G060900 chr2D 24935895 24937098 1203 False 879.000000 1421 92.0890 632 2003 2 chr2D.!!$F1 1371
10 TraesCS2A01G060900 chr2B 40317108 40318233 1125 False 795.500000 1271 91.9400 658 1952 2 chr2B.!!$F5 1294
11 TraesCS2A01G060900 chr2B 40298397 40299963 1566 False 658.666667 1253 90.8510 189 2007 3 chr2B.!!$F4 1818
12 TraesCS2A01G060900 chr3A 670664047 670664850 803 True 1155.000000 1155 92.8310 2308 3101 1 chr3A.!!$R1 793
13 TraesCS2A01G060900 chr5A 18085492 18086297 805 True 1146.000000 1146 92.6020 2308 3101 1 chr5A.!!$R1 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.031449 GGCATCGAGAGGCTACAGTC 59.969 60.0 9.60 0.0 38.32 3.51 F
592 593 0.037419 TGCATGCTACTCTCGCACAA 60.037 50.0 20.33 0.0 40.65 3.33 F
1014 1027 0.179153 GAGAAATGCTTGAAGGCGGC 60.179 55.0 0.00 0.0 34.52 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 1757 0.037697 CAGTTGCCGTAGTAGCCACA 60.038 55.000 0.0 0.0 0.00 4.17 R
1725 1759 1.079405 GCAGTTGCCGTAGTAGCCA 60.079 57.895 0.0 0.0 34.31 4.75 R
2909 3199 0.462225 TTTGACTTTGCACGGACGGA 60.462 50.000 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.433186 TTTTTGCCGTGGAGTCAATATG 57.567 40.909 0.00 0.00 0.00 1.78
32 33 3.342377 TTTGCCGTGGAGTCAATATGA 57.658 42.857 0.00 0.00 0.00 2.15
33 34 3.342377 TTGCCGTGGAGTCAATATGAA 57.658 42.857 0.00 0.00 0.00 2.57
34 35 3.558931 TGCCGTGGAGTCAATATGAAT 57.441 42.857 0.00 0.00 0.00 2.57
35 36 3.466836 TGCCGTGGAGTCAATATGAATC 58.533 45.455 0.00 0.00 40.41 2.52
36 37 3.118445 TGCCGTGGAGTCAATATGAATCA 60.118 43.478 9.63 0.00 42.67 2.57
37 38 4.067896 GCCGTGGAGTCAATATGAATCAT 58.932 43.478 9.63 0.00 42.67 2.45
38 39 4.516698 GCCGTGGAGTCAATATGAATCATT 59.483 41.667 0.00 0.00 42.67 2.57
39 40 5.009010 GCCGTGGAGTCAATATGAATCATTT 59.991 40.000 0.00 0.00 42.67 2.32
40 41 6.662616 CCGTGGAGTCAATATGAATCATTTC 58.337 40.000 0.00 0.00 42.67 2.17
41 42 6.357980 CGTGGAGTCAATATGAATCATTTCG 58.642 40.000 0.00 5.04 42.67 3.46
42 43 6.018751 CGTGGAGTCAATATGAATCATTTCGT 60.019 38.462 0.00 0.00 42.67 3.85
43 44 7.128331 GTGGAGTCAATATGAATCATTTCGTG 58.872 38.462 0.00 0.00 42.67 4.35
44 45 6.823182 TGGAGTCAATATGAATCATTTCGTGT 59.177 34.615 0.00 0.00 42.67 4.49
45 46 7.011389 TGGAGTCAATATGAATCATTTCGTGTC 59.989 37.037 0.00 0.00 42.67 3.67
46 47 7.251704 AGTCAATATGAATCATTTCGTGTCC 57.748 36.000 0.00 0.00 34.39 4.02
47 48 6.823182 AGTCAATATGAATCATTTCGTGTCCA 59.177 34.615 0.00 0.00 34.39 4.02
48 49 7.336679 AGTCAATATGAATCATTTCGTGTCCAA 59.663 33.333 0.00 0.00 34.39 3.53
49 50 7.967854 GTCAATATGAATCATTTCGTGTCCAAA 59.032 33.333 0.00 0.00 34.39 3.28
50 51 7.967854 TCAATATGAATCATTTCGTGTCCAAAC 59.032 33.333 0.00 0.00 34.39 2.93
51 52 5.964958 ATGAATCATTTCGTGTCCAAACT 57.035 34.783 0.00 0.00 34.39 2.66
52 53 5.766150 TGAATCATTTCGTGTCCAAACTT 57.234 34.783 0.00 0.00 34.39 2.66
53 54 6.142818 TGAATCATTTCGTGTCCAAACTTT 57.857 33.333 0.00 0.00 34.39 2.66
54 55 6.568869 TGAATCATTTCGTGTCCAAACTTTT 58.431 32.000 0.00 0.00 34.39 2.27
55 56 7.038659 TGAATCATTTCGTGTCCAAACTTTTT 58.961 30.769 0.00 0.00 34.39 1.94
56 57 8.191446 TGAATCATTTCGTGTCCAAACTTTTTA 58.809 29.630 0.00 0.00 34.39 1.52
57 58 9.191995 GAATCATTTCGTGTCCAAACTTTTTAT 57.808 29.630 0.00 0.00 0.00 1.40
59 60 9.620660 ATCATTTCGTGTCCAAACTTTTTATAC 57.379 29.630 0.00 0.00 0.00 1.47
60 61 7.799447 TCATTTCGTGTCCAAACTTTTTATACG 59.201 33.333 0.00 0.00 0.00 3.06
61 62 6.841443 TTCGTGTCCAAACTTTTTATACGA 57.159 33.333 0.00 0.00 36.42 3.43
62 63 6.456447 TCGTGTCCAAACTTTTTATACGAG 57.544 37.500 0.00 0.00 33.75 4.18
63 64 5.984926 TCGTGTCCAAACTTTTTATACGAGT 59.015 36.000 0.00 0.00 33.75 4.18
64 65 7.144661 TCGTGTCCAAACTTTTTATACGAGTA 58.855 34.615 0.00 0.00 33.75 2.59
65 66 7.114811 TCGTGTCCAAACTTTTTATACGAGTAC 59.885 37.037 0.00 0.00 33.75 2.73
66 67 7.096106 CGTGTCCAAACTTTTTATACGAGTACA 60.096 37.037 0.00 0.00 0.00 2.90
67 68 8.550376 GTGTCCAAACTTTTTATACGAGTACAA 58.450 33.333 0.00 0.00 0.00 2.41
68 69 9.275398 TGTCCAAACTTTTTATACGAGTACAAT 57.725 29.630 0.00 0.00 0.00 2.71
71 72 9.977762 CCAAACTTTTTATACGAGTACAATACC 57.022 33.333 0.00 0.00 0.00 2.73
79 80 9.908152 TTTATACGAGTACAATACCTGATCATG 57.092 33.333 0.00 0.00 0.00 3.07
80 81 5.854010 ACGAGTACAATACCTGATCATGT 57.146 39.130 8.74 8.74 0.00 3.21
81 82 6.222038 ACGAGTACAATACCTGATCATGTT 57.778 37.500 9.01 0.00 0.00 2.71
82 83 6.640518 ACGAGTACAATACCTGATCATGTTT 58.359 36.000 9.01 0.00 0.00 2.83
83 84 6.535150 ACGAGTACAATACCTGATCATGTTTG 59.465 38.462 9.01 13.93 0.00 2.93
84 85 6.756542 CGAGTACAATACCTGATCATGTTTGA 59.243 38.462 21.11 4.56 36.00 2.69
85 86 7.439356 CGAGTACAATACCTGATCATGTTTGAT 59.561 37.037 21.11 6.22 45.39 2.57
86 87 9.113838 GAGTACAATACCTGATCATGTTTGATT 57.886 33.333 21.11 10.41 42.73 2.57
87 88 9.113838 AGTACAATACCTGATCATGTTTGATTC 57.886 33.333 21.11 14.42 42.73 2.52
88 89 7.338800 ACAATACCTGATCATGTTTGATTCC 57.661 36.000 21.11 0.00 42.73 3.01
89 90 6.891361 ACAATACCTGATCATGTTTGATTCCA 59.109 34.615 21.11 2.37 42.73 3.53
90 91 7.396907 ACAATACCTGATCATGTTTGATTCCAA 59.603 33.333 21.11 1.84 42.73 3.53
91 92 7.959658 ATACCTGATCATGTTTGATTCCAAA 57.040 32.000 9.01 0.00 42.73 3.28
92 93 6.669125 ACCTGATCATGTTTGATTCCAAAA 57.331 33.333 0.00 0.00 42.73 2.44
93 94 7.065120 ACCTGATCATGTTTGATTCCAAAAA 57.935 32.000 0.00 0.00 42.73 1.94
154 155 4.782019 TTTTTCCACATGTAGGATGCAC 57.218 40.909 15.05 0.00 34.56 4.57
155 156 2.022764 TTCCACATGTAGGATGCACG 57.977 50.000 15.05 0.00 34.56 5.34
156 157 0.177836 TCCACATGTAGGATGCACGG 59.822 55.000 11.56 0.61 29.56 4.94
157 158 0.815213 CCACATGTAGGATGCACGGG 60.815 60.000 0.00 0.00 29.56 5.28
158 159 0.107703 CACATGTAGGATGCACGGGT 60.108 55.000 0.00 0.00 29.56 5.28
159 160 1.138069 CACATGTAGGATGCACGGGTA 59.862 52.381 0.00 0.00 29.56 3.69
160 161 1.138266 ACATGTAGGATGCACGGGTAC 59.862 52.381 0.00 0.00 29.56 3.34
161 162 1.138069 CATGTAGGATGCACGGGTACA 59.862 52.381 0.00 0.00 29.56 2.90
162 163 0.533491 TGTAGGATGCACGGGTACAC 59.467 55.000 0.00 0.00 0.00 2.90
163 164 0.526954 GTAGGATGCACGGGTACACG 60.527 60.000 17.69 17.69 40.31 4.49
164 165 0.680601 TAGGATGCACGGGTACACGA 60.681 55.000 27.01 1.14 37.61 4.35
165 166 1.518572 GGATGCACGGGTACACGAG 60.519 63.158 27.01 18.63 37.61 4.18
166 167 1.509463 GATGCACGGGTACACGAGA 59.491 57.895 27.01 7.47 37.61 4.04
167 168 0.525668 GATGCACGGGTACACGAGAG 60.526 60.000 27.01 14.39 37.61 3.20
168 169 2.506438 GCACGGGTACACGAGAGC 60.506 66.667 27.01 20.25 37.61 4.09
169 170 2.959372 CACGGGTACACGAGAGCA 59.041 61.111 27.01 0.00 37.61 4.26
170 171 1.443872 CACGGGTACACGAGAGCAC 60.444 63.158 27.01 0.00 37.61 4.40
171 172 2.181021 CGGGTACACGAGAGCACC 59.819 66.667 13.52 0.00 35.47 5.01
172 173 2.632544 CGGGTACACGAGAGCACCA 61.633 63.158 13.52 0.00 33.72 4.17
173 174 1.669440 GGGTACACGAGAGCACCAA 59.331 57.895 0.00 0.00 33.72 3.67
174 175 0.389948 GGGTACACGAGAGCACCAAG 60.390 60.000 0.00 0.00 33.72 3.61
175 176 0.317479 GGTACACGAGAGCACCAAGT 59.683 55.000 0.00 0.00 32.69 3.16
176 177 1.270147 GGTACACGAGAGCACCAAGTT 60.270 52.381 0.00 0.00 32.69 2.66
177 178 2.059541 GTACACGAGAGCACCAAGTTC 58.940 52.381 0.00 0.00 0.00 3.01
178 179 0.597637 ACACGAGAGCACCAAGTTCG 60.598 55.000 0.00 0.00 37.31 3.95
179 180 1.664965 ACGAGAGCACCAAGTTCGC 60.665 57.895 0.00 0.00 34.84 4.70
180 181 2.720758 CGAGAGCACCAAGTTCGCG 61.721 63.158 0.00 0.00 43.11 5.87
181 182 1.664965 GAGAGCACCAAGTTCGCGT 60.665 57.895 5.77 0.00 31.99 6.01
182 183 1.618640 GAGAGCACCAAGTTCGCGTC 61.619 60.000 5.77 0.31 31.99 5.19
183 184 2.665185 AGCACCAAGTTCGCGTCC 60.665 61.111 5.77 0.00 0.00 4.79
184 185 2.970324 GCACCAAGTTCGCGTCCA 60.970 61.111 5.77 0.00 0.00 4.02
185 186 2.954753 GCACCAAGTTCGCGTCCAG 61.955 63.158 5.77 0.00 0.00 3.86
186 187 2.030562 ACCAAGTTCGCGTCCAGG 59.969 61.111 5.77 5.90 0.00 4.45
187 188 3.423154 CCAAGTTCGCGTCCAGGC 61.423 66.667 5.77 0.00 0.00 4.85
204 205 0.031449 GGCATCGAGAGGCTACAGTC 59.969 60.000 9.60 0.00 38.32 3.51
208 209 1.393603 TCGAGAGGCTACAGTCATGG 58.606 55.000 0.00 0.00 0.00 3.66
216 217 3.844211 AGGCTACAGTCATGGTAAGGAAA 59.156 43.478 0.00 0.00 0.00 3.13
322 323 5.051891 CCTACTTGTGGCAAAATCTTCAG 57.948 43.478 0.00 0.00 0.00 3.02
323 324 4.761739 CCTACTTGTGGCAAAATCTTCAGA 59.238 41.667 0.00 0.00 0.00 3.27
324 325 5.416952 CCTACTTGTGGCAAAATCTTCAGAT 59.583 40.000 0.00 0.00 36.07 2.90
343 344 1.958205 GGAGATCGCGGCTGGATTG 60.958 63.158 6.13 0.00 0.00 2.67
358 359 1.675483 GGATTGATTATGCCACGCACA 59.325 47.619 0.00 0.00 43.04 4.57
359 360 2.541588 GGATTGATTATGCCACGCACAC 60.542 50.000 0.00 0.00 43.04 3.82
377 378 2.969827 GTCCCACGCCCCAATTTG 59.030 61.111 0.00 0.00 0.00 2.32
382 383 1.337354 CCCACGCCCCAATTTGTTTAC 60.337 52.381 0.00 0.00 0.00 2.01
389 390 4.439563 CGCCCCAATTTGTTTACCAGATAC 60.440 45.833 0.00 0.00 0.00 2.24
390 391 4.709886 GCCCCAATTTGTTTACCAGATACT 59.290 41.667 0.00 0.00 0.00 2.12
391 392 5.163550 GCCCCAATTTGTTTACCAGATACTC 60.164 44.000 0.00 0.00 0.00 2.59
393 394 6.318900 CCCCAATTTGTTTACCAGATACTCTC 59.681 42.308 0.00 0.00 0.00 3.20
394 395 6.318900 CCCAATTTGTTTACCAGATACTCTCC 59.681 42.308 0.00 0.00 0.00 3.71
395 396 6.318900 CCAATTTGTTTACCAGATACTCTCCC 59.681 42.308 0.00 0.00 0.00 4.30
398 399 4.287552 TGTTTACCAGATACTCTCCCCTC 58.712 47.826 0.00 0.00 0.00 4.30
408 409 4.020617 CTCCCCTCGCAACCTGCA 62.021 66.667 0.00 0.00 45.36 4.41
422 423 4.627035 GCAACCTGCACAAAAATCTTATCC 59.373 41.667 0.00 0.00 44.26 2.59
448 449 2.865079 TCCGGGTCAACTGCATAAAAA 58.135 42.857 0.00 0.00 0.00 1.94
449 450 3.426615 TCCGGGTCAACTGCATAAAAAT 58.573 40.909 0.00 0.00 0.00 1.82
450 451 3.192422 TCCGGGTCAACTGCATAAAAATG 59.808 43.478 0.00 0.00 0.00 2.32
466 467 9.321562 GCATAAAAATGATGAACTGGATTGATT 57.678 29.630 0.00 0.00 0.00 2.57
470 471 8.882415 AAAATGATGAACTGGATTGATTATGC 57.118 30.769 0.00 0.00 0.00 3.14
471 472 6.585695 ATGATGAACTGGATTGATTATGCC 57.414 37.500 0.00 0.00 0.00 4.40
472 473 5.447757 TGATGAACTGGATTGATTATGCCA 58.552 37.500 0.00 0.00 0.00 4.92
473 474 6.072649 TGATGAACTGGATTGATTATGCCAT 58.927 36.000 0.00 0.00 0.00 4.40
474 475 5.777850 TGAACTGGATTGATTATGCCATG 57.222 39.130 0.00 0.00 0.00 3.66
475 476 4.038282 TGAACTGGATTGATTATGCCATGC 59.962 41.667 0.00 0.00 0.00 4.06
476 477 3.568443 ACTGGATTGATTATGCCATGCA 58.432 40.909 0.00 0.00 44.86 3.96
477 478 3.319972 ACTGGATTGATTATGCCATGCAC 59.680 43.478 0.00 0.00 43.04 4.57
478 479 3.297736 TGGATTGATTATGCCATGCACA 58.702 40.909 0.00 0.00 43.04 4.57
479 480 3.898741 TGGATTGATTATGCCATGCACAT 59.101 39.130 0.00 5.01 43.04 3.21
480 481 4.242475 GGATTGATTATGCCATGCACATG 58.758 43.478 3.56 3.56 43.04 3.21
481 482 2.804697 TGATTATGCCATGCACATGC 57.195 45.000 5.06 0.00 43.04 4.06
482 483 1.341852 TGATTATGCCATGCACATGCC 59.658 47.619 5.06 0.00 43.04 4.40
483 484 1.341852 GATTATGCCATGCACATGCCA 59.658 47.619 5.06 0.61 43.04 4.92
484 485 1.415200 TTATGCCATGCACATGCCAT 58.585 45.000 11.34 11.34 43.04 4.40
485 486 0.676736 TATGCCATGCACATGCCATG 59.323 50.000 15.29 16.17 43.04 3.66
486 487 2.587753 GCCATGCACATGCCATGC 60.588 61.111 17.21 9.93 43.68 4.06
487 488 2.108157 CCATGCACATGCCATGCC 59.892 61.111 17.21 0.00 42.69 4.40
488 489 2.726351 CCATGCACATGCCATGCCA 61.726 57.895 17.21 2.77 42.69 4.92
489 490 1.520564 CATGCACATGCCATGCCAC 60.521 57.895 4.17 0.00 42.69 5.01
490 491 1.985116 ATGCACATGCCATGCCACA 60.985 52.632 4.17 0.83 42.69 4.17
491 492 2.125832 GCACATGCCATGCCACAC 60.126 61.111 4.17 0.00 37.08 3.82
492 493 2.642254 GCACATGCCATGCCACACT 61.642 57.895 4.17 0.00 37.08 3.55
493 494 1.214325 CACATGCCATGCCACACTG 59.786 57.895 4.17 0.00 0.00 3.66
494 495 1.228644 ACATGCCATGCCACACTGT 60.229 52.632 4.17 0.00 0.00 3.55
495 496 0.828762 ACATGCCATGCCACACTGTT 60.829 50.000 4.17 0.00 0.00 3.16
496 497 0.319083 CATGCCATGCCACACTGTTT 59.681 50.000 0.00 0.00 0.00 2.83
497 498 1.050204 ATGCCATGCCACACTGTTTT 58.950 45.000 0.00 0.00 0.00 2.43
498 499 0.829333 TGCCATGCCACACTGTTTTT 59.171 45.000 0.00 0.00 0.00 1.94
499 500 1.219646 GCCATGCCACACTGTTTTTG 58.780 50.000 0.00 0.00 0.00 2.44
500 501 1.473080 GCCATGCCACACTGTTTTTGT 60.473 47.619 0.00 0.00 0.00 2.83
501 502 2.903798 CCATGCCACACTGTTTTTGTT 58.096 42.857 0.00 0.00 0.00 2.83
502 503 3.269178 CCATGCCACACTGTTTTTGTTT 58.731 40.909 0.00 0.00 0.00 2.83
503 504 4.437239 CCATGCCACACTGTTTTTGTTTA 58.563 39.130 0.00 0.00 0.00 2.01
504 505 4.269844 CCATGCCACACTGTTTTTGTTTAC 59.730 41.667 0.00 0.00 0.00 2.01
505 506 4.521130 TGCCACACTGTTTTTGTTTACA 57.479 36.364 0.00 0.00 0.00 2.41
506 507 4.883083 TGCCACACTGTTTTTGTTTACAA 58.117 34.783 0.00 0.00 0.00 2.41
507 508 5.297547 TGCCACACTGTTTTTGTTTACAAA 58.702 33.333 4.02 4.02 43.36 2.83
508 509 5.934625 TGCCACACTGTTTTTGTTTACAAAT 59.065 32.000 8.70 0.00 44.30 2.32
509 510 7.097192 TGCCACACTGTTTTTGTTTACAAATA 58.903 30.769 8.70 2.13 44.30 1.40
510 511 7.766278 TGCCACACTGTTTTTGTTTACAAATAT 59.234 29.630 8.70 0.00 44.30 1.28
511 512 9.250624 GCCACACTGTTTTTGTTTACAAATATA 57.749 29.630 8.70 2.78 44.30 0.86
528 529 6.146184 ACAAATATATCTCATTCTCAACCGCG 59.854 38.462 0.00 0.00 0.00 6.46
546 547 1.016130 CGAAGCAACGTGAGCTGGAT 61.016 55.000 15.48 1.53 42.53 3.41
547 548 0.445436 GAAGCAACGTGAGCTGGATG 59.555 55.000 15.48 0.00 42.53 3.51
548 549 1.580845 AAGCAACGTGAGCTGGATGC 61.581 55.000 15.48 6.51 42.53 3.91
549 550 3.044059 GCAACGTGAGCTGGATGCC 62.044 63.158 0.00 0.00 44.23 4.40
550 551 1.376424 CAACGTGAGCTGGATGCCT 60.376 57.895 0.00 0.00 44.23 4.75
551 552 1.376424 AACGTGAGCTGGATGCCTG 60.376 57.895 0.00 0.00 44.23 4.85
552 553 2.513204 CGTGAGCTGGATGCCTGG 60.513 66.667 0.00 0.00 44.23 4.45
553 554 2.993008 GTGAGCTGGATGCCTGGA 59.007 61.111 0.00 0.00 44.23 3.86
554 555 1.530771 GTGAGCTGGATGCCTGGAT 59.469 57.895 0.00 0.00 44.23 3.41
580 581 4.093408 CGAGTGTTAAACTATGTGCATGCT 59.907 41.667 20.33 0.40 40.07 3.79
581 582 5.290885 CGAGTGTTAAACTATGTGCATGCTA 59.709 40.000 20.33 8.52 40.07 3.49
582 583 6.422776 AGTGTTAAACTATGTGCATGCTAC 57.577 37.500 20.33 15.34 37.36 3.58
583 584 6.173339 AGTGTTAAACTATGTGCATGCTACT 58.827 36.000 20.33 5.49 37.36 2.57
584 585 6.313905 AGTGTTAAACTATGTGCATGCTACTC 59.686 38.462 20.33 7.45 37.36 2.59
585 586 6.313905 GTGTTAAACTATGTGCATGCTACTCT 59.686 38.462 20.33 9.47 0.00 3.24
586 587 6.535150 TGTTAAACTATGTGCATGCTACTCTC 59.465 38.462 20.33 3.28 0.00 3.20
587 588 3.361794 ACTATGTGCATGCTACTCTCG 57.638 47.619 20.33 4.02 0.00 4.04
588 589 2.057316 CTATGTGCATGCTACTCTCGC 58.943 52.381 20.33 0.00 0.00 5.03
589 590 0.176449 ATGTGCATGCTACTCTCGCA 59.824 50.000 20.33 0.82 42.25 5.10
590 591 2.002127 GTGCATGCTACTCTCGCAC 58.998 57.895 20.33 0.83 45.25 5.34
591 592 1.591183 TGCATGCTACTCTCGCACA 59.409 52.632 20.33 0.00 40.65 4.57
592 593 0.037419 TGCATGCTACTCTCGCACAA 60.037 50.000 20.33 0.00 40.65 3.33
593 594 0.649475 GCATGCTACTCTCGCACAAG 59.351 55.000 11.37 0.00 40.65 3.16
594 595 0.649475 CATGCTACTCTCGCACAAGC 59.351 55.000 0.00 0.00 40.65 4.01
595 596 0.247460 ATGCTACTCTCGCACAAGCA 59.753 50.000 0.00 0.00 46.30 3.91
596 597 0.667487 TGCTACTCTCGCACAAGCAC 60.667 55.000 0.00 0.00 42.27 4.40
597 598 0.667487 GCTACTCTCGCACAAGCACA 60.667 55.000 0.00 0.00 42.27 4.57
598 599 1.344458 CTACTCTCGCACAAGCACAG 58.656 55.000 0.00 0.00 42.27 3.66
599 600 0.673985 TACTCTCGCACAAGCACAGT 59.326 50.000 0.00 0.00 42.27 3.55
600 601 0.877649 ACTCTCGCACAAGCACAGTG 60.878 55.000 0.00 0.00 42.27 3.66
601 602 1.563435 CTCTCGCACAAGCACAGTGG 61.563 60.000 1.84 0.00 42.27 4.00
602 603 3.245948 CTCGCACAAGCACAGTGGC 62.246 63.158 1.84 0.00 42.27 5.01
603 604 3.585020 CGCACAAGCACAGTGGCA 61.585 61.111 1.84 0.00 42.27 4.92
604 605 2.026590 GCACAAGCACAGTGGCAC 59.973 61.111 10.29 10.29 41.58 5.01
605 606 2.773745 GCACAAGCACAGTGGCACA 61.774 57.895 21.41 0.00 41.58 4.57
693 706 7.147915 GGGTGTTAGGAGCATCAAATCAAATTA 60.148 37.037 0.00 0.00 36.25 1.40
712 725 9.038803 TCAAATTAATCTGAGAGAACATCATCG 57.961 33.333 0.00 0.00 0.00 3.84
713 726 7.418840 AATTAATCTGAGAGAACATCATCGC 57.581 36.000 0.00 0.00 0.00 4.58
714 727 4.397481 AATCTGAGAGAACATCATCGCA 57.603 40.909 0.00 0.00 0.00 5.10
715 728 4.603989 ATCTGAGAGAACATCATCGCAT 57.396 40.909 0.00 0.00 0.00 4.73
718 731 3.461061 TGAGAGAACATCATCGCATTCC 58.539 45.455 0.00 0.00 0.00 3.01
881 894 3.194719 GAACCGATCGACGACCCT 58.805 61.111 18.66 0.00 45.77 4.34
882 895 1.226603 GAACCGATCGACGACCCTG 60.227 63.158 18.66 0.00 45.77 4.45
883 896 3.352338 AACCGATCGACGACCCTGC 62.352 63.158 18.66 0.00 45.77 4.85
884 897 4.570663 CCGATCGACGACCCTGCC 62.571 72.222 18.66 0.00 45.77 4.85
885 898 4.907034 CGATCGACGACCCTGCCG 62.907 72.222 10.26 0.00 45.77 5.69
886 899 3.515286 GATCGACGACCCTGCCGA 61.515 66.667 0.00 0.00 35.43 5.54
887 900 3.471244 GATCGACGACCCTGCCGAG 62.471 68.421 0.00 0.00 34.40 4.63
888 901 3.989838 ATCGACGACCCTGCCGAGA 62.990 63.158 0.00 0.00 34.40 4.04
889 902 4.180946 CGACGACCCTGCCGAGAG 62.181 72.222 0.00 0.00 0.00 3.20
890 903 4.500116 GACGACCCTGCCGAGAGC 62.500 72.222 0.00 0.00 44.14 4.09
951 964 2.032681 GCGTGAGGCCCAACTTCT 59.967 61.111 0.00 0.00 34.80 2.85
952 965 1.600916 GCGTGAGGCCCAACTTCTT 60.601 57.895 0.00 0.00 34.80 2.52
953 966 1.172812 GCGTGAGGCCCAACTTCTTT 61.173 55.000 0.00 0.00 34.80 2.52
954 967 0.593128 CGTGAGGCCCAACTTCTTTG 59.407 55.000 0.00 0.00 34.63 2.77
967 980 5.215160 CAACTTCTTTGGTGAATGTACTGC 58.785 41.667 0.00 0.00 0.00 4.40
968 981 4.718961 ACTTCTTTGGTGAATGTACTGCT 58.281 39.130 0.00 0.00 0.00 4.24
969 982 5.865085 ACTTCTTTGGTGAATGTACTGCTA 58.135 37.500 0.00 0.00 0.00 3.49
970 983 5.701290 ACTTCTTTGGTGAATGTACTGCTAC 59.299 40.000 0.00 0.00 0.00 3.58
971 984 4.575885 TCTTTGGTGAATGTACTGCTACC 58.424 43.478 0.00 0.00 0.00 3.18
972 985 4.286032 TCTTTGGTGAATGTACTGCTACCT 59.714 41.667 0.00 0.00 0.00 3.08
973 986 5.482526 TCTTTGGTGAATGTACTGCTACCTA 59.517 40.000 0.00 0.00 0.00 3.08
974 987 5.748670 TTGGTGAATGTACTGCTACCTAA 57.251 39.130 0.00 0.00 0.00 2.69
975 988 5.950544 TGGTGAATGTACTGCTACCTAAT 57.049 39.130 0.00 0.00 0.00 1.73
976 989 7.426606 TTGGTGAATGTACTGCTACCTAATA 57.573 36.000 0.00 0.00 0.00 0.98
977 990 6.812998 TGGTGAATGTACTGCTACCTAATAC 58.187 40.000 0.00 0.00 0.00 1.89
978 991 5.919141 GGTGAATGTACTGCTACCTAATACG 59.081 44.000 0.00 0.00 0.00 3.06
979 992 6.460676 GGTGAATGTACTGCTACCTAATACGT 60.461 42.308 0.00 0.00 0.00 3.57
980 993 6.417044 GTGAATGTACTGCTACCTAATACGTG 59.583 42.308 0.00 0.00 0.00 4.49
981 994 6.319405 TGAATGTACTGCTACCTAATACGTGA 59.681 38.462 0.00 0.00 0.00 4.35
982 995 5.746307 TGTACTGCTACCTAATACGTGAG 57.254 43.478 0.00 0.00 0.00 3.51
983 996 4.577693 TGTACTGCTACCTAATACGTGAGG 59.422 45.833 0.00 4.77 38.92 3.86
984 997 2.361438 ACTGCTACCTAATACGTGAGGC 59.639 50.000 11.67 1.35 36.17 4.70
985 998 1.684983 TGCTACCTAATACGTGAGGCC 59.315 52.381 11.67 0.00 36.17 5.19
986 999 1.000618 GCTACCTAATACGTGAGGCCC 59.999 57.143 0.00 0.00 36.17 5.80
987 1000 2.313317 CTACCTAATACGTGAGGCCCA 58.687 52.381 0.00 0.00 36.17 5.36
988 1001 1.575419 ACCTAATACGTGAGGCCCAA 58.425 50.000 0.00 0.00 36.17 4.12
989 1002 1.910671 ACCTAATACGTGAGGCCCAAA 59.089 47.619 0.00 0.00 36.17 3.28
990 1003 2.508300 ACCTAATACGTGAGGCCCAAAT 59.492 45.455 0.00 0.00 36.17 2.32
991 1004 3.139077 CCTAATACGTGAGGCCCAAATC 58.861 50.000 0.00 0.00 0.00 2.17
992 1005 2.052782 AATACGTGAGGCCCAAATCC 57.947 50.000 0.00 0.00 0.00 3.01
993 1006 0.916086 ATACGTGAGGCCCAAATCCA 59.084 50.000 0.00 0.00 0.00 3.41
994 1007 0.251916 TACGTGAGGCCCAAATCCAG 59.748 55.000 0.00 0.00 0.00 3.86
995 1008 1.750399 CGTGAGGCCCAAATCCAGG 60.750 63.158 0.00 0.00 0.00 4.45
996 1009 1.691219 GTGAGGCCCAAATCCAGGA 59.309 57.895 0.00 0.00 0.00 3.86
997 1010 0.394899 GTGAGGCCCAAATCCAGGAG 60.395 60.000 0.00 0.00 0.00 3.69
998 1011 0.549902 TGAGGCCCAAATCCAGGAGA 60.550 55.000 0.00 0.00 0.00 3.71
999 1012 0.625849 GAGGCCCAAATCCAGGAGAA 59.374 55.000 0.00 0.00 0.00 2.87
1000 1013 1.005924 GAGGCCCAAATCCAGGAGAAA 59.994 52.381 0.00 0.00 0.00 2.52
1001 1014 1.648037 AGGCCCAAATCCAGGAGAAAT 59.352 47.619 0.00 0.00 0.00 2.17
1002 1015 1.758862 GGCCCAAATCCAGGAGAAATG 59.241 52.381 0.00 0.00 0.00 2.32
1003 1016 1.137675 GCCCAAATCCAGGAGAAATGC 59.862 52.381 0.00 0.00 0.00 3.56
1004 1017 2.743553 CCCAAATCCAGGAGAAATGCT 58.256 47.619 0.00 0.00 0.00 3.79
1005 1018 3.102204 CCCAAATCCAGGAGAAATGCTT 58.898 45.455 0.00 0.00 0.00 3.91
1006 1019 3.118884 CCCAAATCCAGGAGAAATGCTTG 60.119 47.826 0.00 0.00 0.00 4.01
1007 1020 3.765511 CCAAATCCAGGAGAAATGCTTGA 59.234 43.478 0.00 0.00 0.00 3.02
1008 1021 4.221262 CCAAATCCAGGAGAAATGCTTGAA 59.779 41.667 0.00 0.00 0.00 2.69
1009 1022 5.408356 CAAATCCAGGAGAAATGCTTGAAG 58.592 41.667 0.00 0.00 0.00 3.02
1010 1023 3.077484 TCCAGGAGAAATGCTTGAAGG 57.923 47.619 0.00 0.00 0.00 3.46
1011 1024 1.475682 CCAGGAGAAATGCTTGAAGGC 59.524 52.381 0.00 0.00 0.00 4.35
1012 1025 1.131883 CAGGAGAAATGCTTGAAGGCG 59.868 52.381 0.00 0.00 34.52 5.52
1013 1026 0.453390 GGAGAAATGCTTGAAGGCGG 59.547 55.000 0.00 0.00 34.52 6.13
1014 1027 0.179153 GAGAAATGCTTGAAGGCGGC 60.179 55.000 0.00 0.00 34.52 6.53
1015 1028 1.153765 GAAATGCTTGAAGGCGGCC 60.154 57.895 12.11 12.11 34.52 6.13
1016 1029 2.563050 GAAATGCTTGAAGGCGGCCC 62.563 60.000 17.02 1.16 34.52 5.80
1131 1144 4.508128 GTCGCCGGAGCCGATGAA 62.508 66.667 5.05 0.00 42.83 2.57
1235 1254 2.049802 GTCGCCGTCGTTCCTCAA 60.050 61.111 0.00 0.00 36.96 3.02
1268 1287 1.381928 CGTTACCCTGGCGAGCTCTA 61.382 60.000 12.85 0.00 0.00 2.43
1270 1289 1.413077 GTTACCCTGGCGAGCTCTATT 59.587 52.381 12.85 0.00 0.00 1.73
1515 1540 1.207791 CCCAGATGCAGGTCCTAACT 58.792 55.000 0.00 0.00 0.00 2.24
1529 1554 0.248296 CTAACTGAGGAGCTCGCGAC 60.248 60.000 3.71 2.10 32.35 5.19
1692 1726 1.884926 CGCGATGCTCTTCTTCCCC 60.885 63.158 0.00 0.00 0.00 4.81
1815 1849 0.768221 TCAGGGACCTGGTGAAGCTT 60.768 55.000 17.75 0.00 43.75 3.74
1816 1850 0.607489 CAGGGACCTGGTGAAGCTTG 60.607 60.000 2.10 0.00 40.17 4.01
1818 1852 0.890996 GGGACCTGGTGAAGCTTGTG 60.891 60.000 2.10 0.00 0.00 3.33
1842 1876 1.518572 CCACGCGGACATACTGGAC 60.519 63.158 12.47 0.00 0.00 4.02
1846 1880 1.898154 GCGGACATACTGGACCTGT 59.102 57.895 9.21 9.21 0.00 4.00
1860 1894 2.047274 CTGTTGATGGACGCCGGT 60.047 61.111 1.90 0.00 0.00 5.28
1911 1945 1.755783 GTCGTCCCCGAGGTACCAT 60.756 63.158 15.94 0.00 45.26 3.55
2046 2080 0.813610 CGACGGCCAAATCTATGCCA 60.814 55.000 2.24 0.00 45.63 4.92
2316 2350 1.441729 CCGTCGGCATATCTGTGGT 59.558 57.895 0.00 0.00 0.00 4.16
2410 2444 3.410516 CGATCCGTGTGTGCGCAA 61.411 61.111 14.00 0.00 0.00 4.85
2726 3010 2.280119 GCATGCATAGACGCCCGA 60.280 61.111 14.21 0.00 0.00 5.14
2728 3012 1.227234 CATGCATAGACGCCCGACA 60.227 57.895 0.00 0.00 0.00 4.35
2729 3013 1.227263 ATGCATAGACGCCCGACAC 60.227 57.895 0.00 0.00 0.00 3.67
2731 3015 2.954868 CATAGACGCCCGACACGC 60.955 66.667 0.00 0.00 0.00 5.34
2909 3199 0.765510 GGAGGTCCACTGGTCAAAGT 59.234 55.000 0.00 0.00 35.64 2.66
3039 3329 2.124320 ATACATGCGGGGTGGTGC 60.124 61.111 0.00 0.00 0.00 5.01
3059 3349 1.296715 GTGGCATGTCCGAAGAGGT 59.703 57.895 0.00 0.00 41.99 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.075682 TCATATTGACTCCACGGCAAAAA 58.924 39.130 0.00 0.00 0.00 1.94
11 12 3.680490 TCATATTGACTCCACGGCAAAA 58.320 40.909 0.00 0.00 0.00 2.44
12 13 3.342377 TCATATTGACTCCACGGCAAA 57.658 42.857 0.00 0.00 0.00 3.68
13 14 3.342377 TTCATATTGACTCCACGGCAA 57.658 42.857 0.00 0.00 0.00 4.52
14 15 3.118445 TGATTCATATTGACTCCACGGCA 60.118 43.478 0.00 0.00 0.00 5.69
15 16 3.466836 TGATTCATATTGACTCCACGGC 58.533 45.455 0.00 0.00 0.00 5.68
16 17 6.564686 CGAAATGATTCATATTGACTCCACGG 60.565 42.308 0.00 0.00 35.15 4.94
17 18 6.018751 ACGAAATGATTCATATTGACTCCACG 60.019 38.462 0.00 0.00 35.15 4.94
18 19 7.128331 CACGAAATGATTCATATTGACTCCAC 58.872 38.462 0.00 0.00 35.15 4.02
19 20 6.823182 ACACGAAATGATTCATATTGACTCCA 59.177 34.615 0.00 0.00 35.15 3.86
20 21 7.251704 ACACGAAATGATTCATATTGACTCC 57.748 36.000 0.00 0.00 35.15 3.85
21 22 7.011389 TGGACACGAAATGATTCATATTGACTC 59.989 37.037 0.00 0.00 35.15 3.36
22 23 6.823182 TGGACACGAAATGATTCATATTGACT 59.177 34.615 0.00 0.00 35.15 3.41
23 24 7.015226 TGGACACGAAATGATTCATATTGAC 57.985 36.000 0.00 0.00 35.15 3.18
24 25 7.622893 TTGGACACGAAATGATTCATATTGA 57.377 32.000 0.00 0.00 35.15 2.57
25 26 7.970061 AGTTTGGACACGAAATGATTCATATTG 59.030 33.333 0.00 0.00 35.15 1.90
26 27 8.055279 AGTTTGGACACGAAATGATTCATATT 57.945 30.769 0.00 0.00 35.15 1.28
27 28 7.630242 AGTTTGGACACGAAATGATTCATAT 57.370 32.000 0.00 0.00 35.15 1.78
28 29 7.447374 AAGTTTGGACACGAAATGATTCATA 57.553 32.000 0.00 0.00 35.15 2.15
29 30 5.964958 AGTTTGGACACGAAATGATTCAT 57.035 34.783 0.00 0.00 35.15 2.57
30 31 5.766150 AAGTTTGGACACGAAATGATTCA 57.234 34.783 0.00 0.00 35.15 2.57
31 32 7.463469 AAAAAGTTTGGACACGAAATGATTC 57.537 32.000 0.00 0.00 0.00 2.52
33 34 9.620660 GTATAAAAAGTTTGGACACGAAATGAT 57.379 29.630 0.00 0.00 0.00 2.45
34 35 7.799447 CGTATAAAAAGTTTGGACACGAAATGA 59.201 33.333 0.00 0.00 0.00 2.57
35 36 7.799447 TCGTATAAAAAGTTTGGACACGAAATG 59.201 33.333 11.19 0.00 33.47 2.32
36 37 7.863666 TCGTATAAAAAGTTTGGACACGAAAT 58.136 30.769 11.19 0.00 33.47 2.17
37 38 7.011295 ACTCGTATAAAAAGTTTGGACACGAAA 59.989 33.333 13.37 0.00 35.72 3.46
38 39 6.479660 ACTCGTATAAAAAGTTTGGACACGAA 59.520 34.615 13.37 3.23 35.72 3.85
39 40 5.984926 ACTCGTATAAAAAGTTTGGACACGA 59.015 36.000 12.37 12.37 34.99 4.35
40 41 6.219302 ACTCGTATAAAAAGTTTGGACACG 57.781 37.500 0.00 0.00 0.00 4.49
41 42 8.075593 TGTACTCGTATAAAAAGTTTGGACAC 57.924 34.615 0.00 0.00 0.00 3.67
42 43 8.659925 TTGTACTCGTATAAAAAGTTTGGACA 57.340 30.769 0.00 0.00 0.00 4.02
45 46 9.977762 GGTATTGTACTCGTATAAAAAGTTTGG 57.022 33.333 0.00 0.00 0.00 3.28
53 54 9.908152 CATGATCAGGTATTGTACTCGTATAAA 57.092 33.333 0.09 0.00 0.00 1.40
54 55 9.074576 ACATGATCAGGTATTGTACTCGTATAA 57.925 33.333 12.06 0.00 0.00 0.98
55 56 8.631480 ACATGATCAGGTATTGTACTCGTATA 57.369 34.615 12.06 0.00 0.00 1.47
56 57 7.526142 ACATGATCAGGTATTGTACTCGTAT 57.474 36.000 12.06 0.00 0.00 3.06
57 58 6.954487 ACATGATCAGGTATTGTACTCGTA 57.046 37.500 12.06 0.00 0.00 3.43
58 59 5.854010 ACATGATCAGGTATTGTACTCGT 57.146 39.130 12.06 0.00 0.00 4.18
59 60 6.756542 TCAAACATGATCAGGTATTGTACTCG 59.243 38.462 14.25 0.00 0.00 4.18
60 61 8.668510 ATCAAACATGATCAGGTATTGTACTC 57.331 34.615 14.25 0.00 0.00 2.59
61 62 9.113838 GAATCAAACATGATCAGGTATTGTACT 57.886 33.333 14.25 8.98 0.00 2.73
62 63 8.345565 GGAATCAAACATGATCAGGTATTGTAC 58.654 37.037 14.25 13.42 0.00 2.90
63 64 8.052141 TGGAATCAAACATGATCAGGTATTGTA 58.948 33.333 14.25 10.27 0.00 2.41
64 65 6.891361 TGGAATCAAACATGATCAGGTATTGT 59.109 34.615 14.25 3.01 0.00 2.71
65 66 7.337480 TGGAATCAAACATGATCAGGTATTG 57.663 36.000 14.25 17.97 0.00 1.90
66 67 7.959658 TTGGAATCAAACATGATCAGGTATT 57.040 32.000 14.25 9.91 0.00 1.89
67 68 7.959658 TTTGGAATCAAACATGATCAGGTAT 57.040 32.000 14.25 0.59 37.89 2.73
68 69 7.773489 TTTTGGAATCAAACATGATCAGGTA 57.227 32.000 14.25 0.00 41.97 3.08
69 70 6.669125 TTTTGGAATCAAACATGATCAGGT 57.331 33.333 7.30 7.30 41.97 4.00
133 134 3.190327 CGTGCATCCTACATGTGGAAAAA 59.810 43.478 11.31 2.31 37.13 1.94
134 135 2.746904 CGTGCATCCTACATGTGGAAAA 59.253 45.455 11.31 2.62 37.13 2.29
135 136 2.355197 CGTGCATCCTACATGTGGAAA 58.645 47.619 11.31 0.00 37.13 3.13
136 137 1.406751 CCGTGCATCCTACATGTGGAA 60.407 52.381 11.31 0.00 37.13 3.53
137 138 0.177836 CCGTGCATCCTACATGTGGA 59.822 55.000 11.31 14.26 38.06 4.02
138 139 0.815213 CCCGTGCATCCTACATGTGG 60.815 60.000 9.11 5.17 0.00 4.17
139 140 0.107703 ACCCGTGCATCCTACATGTG 60.108 55.000 9.11 0.00 0.00 3.21
140 141 1.138266 GTACCCGTGCATCCTACATGT 59.862 52.381 2.69 2.69 0.00 3.21
141 142 1.138069 TGTACCCGTGCATCCTACATG 59.862 52.381 0.00 0.00 0.00 3.21
142 143 1.138266 GTGTACCCGTGCATCCTACAT 59.862 52.381 0.00 0.00 0.00 2.29
143 144 0.533491 GTGTACCCGTGCATCCTACA 59.467 55.000 0.00 0.00 0.00 2.74
144 145 0.526954 CGTGTACCCGTGCATCCTAC 60.527 60.000 0.00 0.00 0.00 3.18
145 146 0.680601 TCGTGTACCCGTGCATCCTA 60.681 55.000 0.00 0.00 0.00 2.94
146 147 1.945354 CTCGTGTACCCGTGCATCCT 61.945 60.000 0.00 0.00 0.00 3.24
147 148 1.518572 CTCGTGTACCCGTGCATCC 60.519 63.158 0.00 0.00 0.00 3.51
148 149 0.525668 CTCTCGTGTACCCGTGCATC 60.526 60.000 0.00 0.00 0.00 3.91
149 150 1.511305 CTCTCGTGTACCCGTGCAT 59.489 57.895 0.00 0.00 0.00 3.96
150 151 2.959372 CTCTCGTGTACCCGTGCA 59.041 61.111 0.00 0.00 0.00 4.57
151 152 2.506438 GCTCTCGTGTACCCGTGC 60.506 66.667 0.00 0.00 0.00 5.34
152 153 1.443872 GTGCTCTCGTGTACCCGTG 60.444 63.158 0.00 0.00 0.00 4.94
153 154 2.633509 GGTGCTCTCGTGTACCCGT 61.634 63.158 0.00 0.00 36.84 5.28
154 155 2.149803 TTGGTGCTCTCGTGTACCCG 62.150 60.000 9.46 0.00 41.15 5.28
155 156 0.389948 CTTGGTGCTCTCGTGTACCC 60.390 60.000 9.46 0.00 41.15 3.69
156 157 0.317479 ACTTGGTGCTCTCGTGTACC 59.683 55.000 0.00 6.27 42.00 3.34
157 158 2.059541 GAACTTGGTGCTCTCGTGTAC 58.940 52.381 0.00 0.00 0.00 2.90
158 159 1.335597 CGAACTTGGTGCTCTCGTGTA 60.336 52.381 0.00 0.00 0.00 2.90
159 160 0.597637 CGAACTTGGTGCTCTCGTGT 60.598 55.000 0.00 0.00 0.00 4.49
160 161 1.891060 GCGAACTTGGTGCTCTCGTG 61.891 60.000 0.00 0.00 32.23 4.35
161 162 1.664965 GCGAACTTGGTGCTCTCGT 60.665 57.895 0.00 0.00 32.23 4.18
162 163 2.720758 CGCGAACTTGGTGCTCTCG 61.721 63.158 0.00 0.00 0.00 4.04
163 164 1.618640 GACGCGAACTTGGTGCTCTC 61.619 60.000 15.93 0.00 0.00 3.20
164 165 1.664965 GACGCGAACTTGGTGCTCT 60.665 57.895 15.93 0.00 0.00 4.09
165 166 2.668280 GGACGCGAACTTGGTGCTC 61.668 63.158 15.93 0.00 0.00 4.26
166 167 2.665185 GGACGCGAACTTGGTGCT 60.665 61.111 15.93 0.00 0.00 4.40
167 168 2.954753 CTGGACGCGAACTTGGTGC 61.955 63.158 15.93 0.00 0.00 5.01
168 169 2.317609 CCTGGACGCGAACTTGGTG 61.318 63.158 15.93 0.00 0.00 4.17
169 170 2.030562 CCTGGACGCGAACTTGGT 59.969 61.111 15.93 0.00 0.00 3.67
170 171 3.423154 GCCTGGACGCGAACTTGG 61.423 66.667 15.93 12.26 0.00 3.61
171 172 1.970917 GATGCCTGGACGCGAACTTG 61.971 60.000 15.93 0.00 0.00 3.16
172 173 1.741770 GATGCCTGGACGCGAACTT 60.742 57.895 15.93 0.00 0.00 2.66
173 174 2.125512 GATGCCTGGACGCGAACT 60.126 61.111 15.93 0.00 0.00 3.01
174 175 3.554692 CGATGCCTGGACGCGAAC 61.555 66.667 15.93 5.30 0.00 3.95
175 176 3.699955 CTCGATGCCTGGACGCGAA 62.700 63.158 15.93 0.00 0.00 4.70
176 177 4.193334 CTCGATGCCTGGACGCGA 62.193 66.667 15.93 1.26 0.00 5.87
177 178 4.193334 TCTCGATGCCTGGACGCG 62.193 66.667 3.53 3.53 0.00 6.01
178 179 2.279120 CTCTCGATGCCTGGACGC 60.279 66.667 0.00 0.00 0.00 5.19
179 180 2.415010 CCTCTCGATGCCTGGACG 59.585 66.667 0.00 0.00 0.00 4.79
180 181 1.109920 TAGCCTCTCGATGCCTGGAC 61.110 60.000 0.00 0.00 0.00 4.02
181 182 1.109920 GTAGCCTCTCGATGCCTGGA 61.110 60.000 0.00 0.00 0.00 3.86
182 183 1.365633 GTAGCCTCTCGATGCCTGG 59.634 63.158 0.00 0.00 0.00 4.45
183 184 0.031857 CTGTAGCCTCTCGATGCCTG 59.968 60.000 0.00 0.00 0.00 4.85
184 185 0.396417 ACTGTAGCCTCTCGATGCCT 60.396 55.000 0.00 0.00 0.00 4.75
185 186 0.031449 GACTGTAGCCTCTCGATGCC 59.969 60.000 0.00 0.00 0.00 4.40
186 187 0.741326 TGACTGTAGCCTCTCGATGC 59.259 55.000 0.00 0.00 0.00 3.91
187 188 2.288091 CCATGACTGTAGCCTCTCGATG 60.288 54.545 0.00 0.00 0.00 3.84
216 217 7.657761 TGGTACAACCGCATTTATTGAATTTTT 59.342 29.630 0.00 0.00 42.58 1.94
219 220 6.274157 TGGTACAACCGCATTTATTGAATT 57.726 33.333 0.00 0.00 42.58 2.17
220 221 5.678616 GCTGGTACAACCGCATTTATTGAAT 60.679 40.000 0.00 0.00 42.58 2.57
225 226 2.943033 GAGCTGGTACAACCGCATTTAT 59.057 45.455 0.00 0.00 42.58 1.40
322 323 2.164865 ATCCAGCCGCGATCTCCATC 62.165 60.000 8.23 0.00 0.00 3.51
323 324 1.762522 AATCCAGCCGCGATCTCCAT 61.763 55.000 8.23 0.00 0.00 3.41
324 325 2.434843 AATCCAGCCGCGATCTCCA 61.435 57.895 8.23 0.00 0.00 3.86
343 344 4.974468 CGTGTGCGTGGCATAATC 57.026 55.556 0.00 0.00 41.91 1.75
358 359 3.501040 AAATTGGGGCGTGGGACGT 62.501 57.895 0.00 0.00 44.73 4.34
359 360 2.675075 AAATTGGGGCGTGGGACG 60.675 61.111 0.00 0.00 45.88 4.79
389 390 2.581354 CAGGTTGCGAGGGGAGAG 59.419 66.667 0.00 0.00 0.00 3.20
390 391 3.706373 GCAGGTTGCGAGGGGAGA 61.706 66.667 0.00 0.00 31.71 3.71
422 423 1.217882 GCAGTTGACCCGGATATTCG 58.782 55.000 0.73 0.00 0.00 3.34
432 433 7.062605 CAGTTCATCATTTTTATGCAGTTGACC 59.937 37.037 0.00 0.00 0.00 4.02
448 449 6.072649 TGGCATAATCAATCCAGTTCATCAT 58.927 36.000 0.00 0.00 0.00 2.45
449 450 5.447757 TGGCATAATCAATCCAGTTCATCA 58.552 37.500 0.00 0.00 0.00 3.07
450 451 6.387465 CATGGCATAATCAATCCAGTTCATC 58.613 40.000 0.00 0.00 31.36 2.92
470 471 2.108157 GGCATGGCATGTGCATGG 59.892 61.111 26.94 1.79 44.25 3.66
471 472 1.520564 GTGGCATGGCATGTGCATG 60.521 57.895 26.07 7.74 44.25 4.06
472 473 1.985116 TGTGGCATGGCATGTGCAT 60.985 52.632 26.07 0.00 44.25 3.96
473 474 2.600769 TGTGGCATGGCATGTGCA 60.601 55.556 26.07 19.51 44.25 4.57
474 475 2.125832 GTGTGGCATGGCATGTGC 60.126 61.111 26.07 16.44 41.78 4.57
475 476 1.214325 CAGTGTGGCATGGCATGTG 59.786 57.895 26.07 17.89 0.00 3.21
476 477 0.828762 AACAGTGTGGCATGGCATGT 60.829 50.000 26.07 21.68 0.00 3.21
477 478 0.319083 AAACAGTGTGGCATGGCATG 59.681 50.000 26.07 22.99 0.00 4.06
478 479 1.050204 AAAACAGTGTGGCATGGCAT 58.950 45.000 26.07 6.64 0.00 4.40
479 480 0.829333 AAAAACAGTGTGGCATGGCA 59.171 45.000 19.43 19.43 0.00 4.92
480 481 1.219646 CAAAAACAGTGTGGCATGGC 58.780 50.000 13.29 13.29 0.00 4.40
481 482 2.600470 ACAAAAACAGTGTGGCATGG 57.400 45.000 0.00 0.00 0.00 3.66
482 483 4.867047 TGTAAACAAAAACAGTGTGGCATG 59.133 37.500 0.00 0.00 0.00 4.06
483 484 5.078411 TGTAAACAAAAACAGTGTGGCAT 57.922 34.783 0.00 0.00 0.00 4.40
484 485 4.521130 TGTAAACAAAAACAGTGTGGCA 57.479 36.364 0.00 0.00 0.00 4.92
485 486 5.847670 TTTGTAAACAAAAACAGTGTGGC 57.152 34.783 5.82 0.00 42.26 5.01
501 502 8.988934 GCGGTTGAGAATGAGATATATTTGTAA 58.011 33.333 0.00 0.00 0.00 2.41
502 503 7.328493 CGCGGTTGAGAATGAGATATATTTGTA 59.672 37.037 0.00 0.00 0.00 2.41
503 504 6.146184 CGCGGTTGAGAATGAGATATATTTGT 59.854 38.462 0.00 0.00 0.00 2.83
504 505 6.366061 TCGCGGTTGAGAATGAGATATATTTG 59.634 38.462 6.13 0.00 0.00 2.32
505 506 6.455647 TCGCGGTTGAGAATGAGATATATTT 58.544 36.000 6.13 0.00 0.00 1.40
506 507 6.025749 TCGCGGTTGAGAATGAGATATATT 57.974 37.500 6.13 0.00 0.00 1.28
507 508 5.644977 TCGCGGTTGAGAATGAGATATAT 57.355 39.130 6.13 0.00 0.00 0.86
508 509 5.447624 TTCGCGGTTGAGAATGAGATATA 57.552 39.130 6.13 0.00 0.00 0.86
509 510 4.302455 CTTCGCGGTTGAGAATGAGATAT 58.698 43.478 6.13 0.00 33.29 1.63
510 511 3.706698 CTTCGCGGTTGAGAATGAGATA 58.293 45.455 6.13 0.00 33.29 1.98
511 512 2.544685 CTTCGCGGTTGAGAATGAGAT 58.455 47.619 6.13 0.00 33.29 2.75
512 513 1.996292 CTTCGCGGTTGAGAATGAGA 58.004 50.000 6.13 0.00 33.29 3.27
513 514 0.371645 GCTTCGCGGTTGAGAATGAG 59.628 55.000 6.13 0.00 33.29 2.90
514 515 0.320334 TGCTTCGCGGTTGAGAATGA 60.320 50.000 6.13 0.00 33.29 2.57
515 516 0.516877 TTGCTTCGCGGTTGAGAATG 59.483 50.000 6.13 0.00 33.29 2.67
516 517 0.517316 GTTGCTTCGCGGTTGAGAAT 59.483 50.000 6.13 0.00 33.29 2.40
517 518 1.827315 CGTTGCTTCGCGGTTGAGAA 61.827 55.000 6.13 0.00 32.72 2.87
518 519 2.307309 CGTTGCTTCGCGGTTGAGA 61.307 57.895 6.13 0.00 0.00 3.27
523 524 3.036084 CTCACGTTGCTTCGCGGT 61.036 61.111 6.13 0.00 0.00 5.68
528 529 0.445436 CATCCAGCTCACGTTGCTTC 59.555 55.000 9.79 0.00 38.92 3.86
536 537 0.534652 GATCCAGGCATCCAGCTCAC 60.535 60.000 0.00 0.00 44.79 3.51
546 547 1.262417 TAACACTCGTGATCCAGGCA 58.738 50.000 3.74 0.00 0.00 4.75
547 548 2.380084 TTAACACTCGTGATCCAGGC 57.620 50.000 3.74 0.00 0.00 4.85
548 549 3.926616 AGTTTAACACTCGTGATCCAGG 58.073 45.455 3.74 0.00 0.00 4.45
549 550 6.035005 CACATAGTTTAACACTCGTGATCCAG 59.965 42.308 3.74 0.00 39.72 3.86
550 551 5.867174 CACATAGTTTAACACTCGTGATCCA 59.133 40.000 3.74 0.00 39.72 3.41
551 552 5.220416 GCACATAGTTTAACACTCGTGATCC 60.220 44.000 3.74 0.00 39.72 3.36
552 553 5.347635 TGCACATAGTTTAACACTCGTGATC 59.652 40.000 3.74 0.00 39.72 2.92
553 554 5.234752 TGCACATAGTTTAACACTCGTGAT 58.765 37.500 3.74 0.00 39.72 3.06
554 555 4.623002 TGCACATAGTTTAACACTCGTGA 58.377 39.130 3.74 0.00 39.72 4.35
580 581 0.673985 ACTGTGCTTGTGCGAGAGTA 59.326 50.000 0.00 0.00 43.34 2.59
581 582 0.877649 CACTGTGCTTGTGCGAGAGT 60.878 55.000 0.00 0.00 43.34 3.24
582 583 1.563435 CCACTGTGCTTGTGCGAGAG 61.563 60.000 1.29 0.00 43.34 3.20
583 584 1.595109 CCACTGTGCTTGTGCGAGA 60.595 57.895 1.29 0.00 43.34 4.04
584 585 2.941333 CCACTGTGCTTGTGCGAG 59.059 61.111 1.29 0.00 43.34 5.03
585 586 3.279116 GCCACTGTGCTTGTGCGA 61.279 61.111 1.29 0.00 43.34 5.10
586 587 3.585020 TGCCACTGTGCTTGTGCG 61.585 61.111 1.29 0.00 43.34 5.34
587 588 2.026590 GTGCCACTGTGCTTGTGC 59.973 61.111 1.29 0.49 40.20 4.57
588 589 1.064621 GTGTGCCACTGTGCTTGTG 59.935 57.895 1.29 0.00 35.39 3.33
589 590 2.120909 GGTGTGCCACTGTGCTTGT 61.121 57.895 1.29 0.00 34.40 3.16
590 591 2.120282 TGGTGTGCCACTGTGCTTG 61.120 57.895 1.29 0.00 40.46 4.01
591 592 2.275089 TGGTGTGCCACTGTGCTT 59.725 55.556 1.29 0.00 40.46 3.91
602 603 1.635844 GTCATTGCATGCATGGTGTG 58.364 50.000 27.34 14.85 0.00 3.82
603 604 0.171679 CGTCATTGCATGCATGGTGT 59.828 50.000 27.34 2.68 0.00 4.16
604 605 1.143373 GCGTCATTGCATGCATGGTG 61.143 55.000 27.34 19.65 34.15 4.17
605 606 1.140161 GCGTCATTGCATGCATGGT 59.860 52.632 27.34 8.11 34.15 3.55
606 607 0.458716 TTGCGTCATTGCATGCATGG 60.459 50.000 27.34 16.60 45.78 3.66
607 608 0.920664 CTTGCGTCATTGCATGCATG 59.079 50.000 23.37 22.70 45.78 4.06
608 609 3.339061 CTTGCGTCATTGCATGCAT 57.661 47.368 23.37 9.04 45.78 3.96
609 610 4.872418 CTTGCGTCATTGCATGCA 57.128 50.000 18.46 18.46 45.78 3.96
611 612 0.387494 TGTGCTTGCGTCATTGCATG 60.387 50.000 0.00 0.00 45.78 4.06
612 613 0.314618 TTGTGCTTGCGTCATTGCAT 59.685 45.000 0.00 0.00 45.78 3.96
613 614 0.101939 TTTGTGCTTGCGTCATTGCA 59.898 45.000 0.00 0.00 44.61 4.08
614 615 0.780002 CTTTGTGCTTGCGTCATTGC 59.220 50.000 0.00 0.00 0.00 3.56
615 616 0.780002 GCTTTGTGCTTGCGTCATTG 59.220 50.000 0.00 0.00 38.95 2.82
628 629 2.867109 ATAGGCACACAGAGCTTTGT 57.133 45.000 3.61 3.61 0.00 2.83
643 652 3.679389 CTGGCCTGGCTGTTTATATAGG 58.321 50.000 19.68 0.00 0.00 2.57
693 706 4.397481 TGCGATGATGTTCTCTCAGATT 57.603 40.909 0.00 0.00 0.00 2.40
697 710 3.461061 GGAATGCGATGATGTTCTCTCA 58.539 45.455 0.00 0.00 0.00 3.27
704 717 2.643995 TCATGGGAATGCGATGATGT 57.356 45.000 0.00 0.00 0.00 3.06
706 719 3.244805 ACTCATCATGGGAATGCGATGAT 60.245 43.478 6.44 6.44 42.37 2.45
709 722 2.105306 TCACTCATCATGGGAATGCGAT 59.895 45.455 0.00 0.00 0.00 4.58
712 725 1.600957 CGTCACTCATCATGGGAATGC 59.399 52.381 0.00 0.00 0.00 3.56
713 726 1.600957 GCGTCACTCATCATGGGAATG 59.399 52.381 0.00 0.00 0.00 2.67
714 727 1.487976 AGCGTCACTCATCATGGGAAT 59.512 47.619 0.00 0.00 0.00 3.01
715 728 0.904649 AGCGTCACTCATCATGGGAA 59.095 50.000 0.00 0.00 0.00 3.97
718 731 2.159184 ACTACAGCGTCACTCATCATGG 60.159 50.000 0.00 0.00 0.00 3.66
793 806 0.686224 GGAGGAGAGGCTGATGATGG 59.314 60.000 0.00 0.00 0.00 3.51
885 898 3.844090 GTCTCCGCCCCTGCTCTC 61.844 72.222 0.00 0.00 34.43 3.20
886 899 4.704103 TGTCTCCGCCCCTGCTCT 62.704 66.667 0.00 0.00 34.43 4.09
887 900 4.154347 CTGTCTCCGCCCCTGCTC 62.154 72.222 0.00 0.00 34.43 4.26
934 947 1.172812 AAAGAAGTTGGGCCTCACGC 61.173 55.000 4.53 0.00 0.00 5.34
935 948 0.593128 CAAAGAAGTTGGGCCTCACG 59.407 55.000 4.53 0.00 33.18 4.35
944 957 5.009010 AGCAGTACATTCACCAAAGAAGTTG 59.991 40.000 0.00 0.00 36.94 3.16
945 958 5.133221 AGCAGTACATTCACCAAAGAAGTT 58.867 37.500 0.00 0.00 0.00 2.66
946 959 4.718961 AGCAGTACATTCACCAAAGAAGT 58.281 39.130 0.00 0.00 0.00 3.01
947 960 5.122396 GGTAGCAGTACATTCACCAAAGAAG 59.878 44.000 0.00 0.00 0.00 2.85
948 961 5.001232 GGTAGCAGTACATTCACCAAAGAA 58.999 41.667 0.00 0.00 0.00 2.52
949 962 4.286032 AGGTAGCAGTACATTCACCAAAGA 59.714 41.667 0.00 0.00 0.00 2.52
950 963 4.579869 AGGTAGCAGTACATTCACCAAAG 58.420 43.478 0.00 0.00 0.00 2.77
951 964 4.634012 AGGTAGCAGTACATTCACCAAA 57.366 40.909 0.00 0.00 0.00 3.28
952 965 5.748670 TTAGGTAGCAGTACATTCACCAA 57.251 39.130 0.00 0.00 0.00 3.67
953 966 5.950544 ATTAGGTAGCAGTACATTCACCA 57.049 39.130 0.00 0.00 0.00 4.17
954 967 5.919141 CGTATTAGGTAGCAGTACATTCACC 59.081 44.000 0.00 0.00 0.00 4.02
955 968 6.417044 CACGTATTAGGTAGCAGTACATTCAC 59.583 42.308 0.00 0.00 0.00 3.18
956 969 6.319405 TCACGTATTAGGTAGCAGTACATTCA 59.681 38.462 0.00 0.00 0.00 2.57
957 970 6.732154 TCACGTATTAGGTAGCAGTACATTC 58.268 40.000 0.00 0.00 0.00 2.67
958 971 6.238953 CCTCACGTATTAGGTAGCAGTACATT 60.239 42.308 0.00 0.00 0.00 2.71
959 972 5.241064 CCTCACGTATTAGGTAGCAGTACAT 59.759 44.000 0.00 0.00 0.00 2.29
960 973 4.577693 CCTCACGTATTAGGTAGCAGTACA 59.422 45.833 0.00 0.00 0.00 2.90
961 974 4.556302 GCCTCACGTATTAGGTAGCAGTAC 60.556 50.000 11.24 0.00 35.16 2.73
962 975 3.567164 GCCTCACGTATTAGGTAGCAGTA 59.433 47.826 11.24 0.00 35.16 2.74
963 976 2.361438 GCCTCACGTATTAGGTAGCAGT 59.639 50.000 11.24 0.00 35.16 4.40
964 977 2.288273 GGCCTCACGTATTAGGTAGCAG 60.288 54.545 11.24 0.00 35.16 4.24
965 978 1.684983 GGCCTCACGTATTAGGTAGCA 59.315 52.381 11.24 0.00 35.16 3.49
966 979 1.000618 GGGCCTCACGTATTAGGTAGC 59.999 57.143 0.84 0.00 35.16 3.58
967 980 2.313317 TGGGCCTCACGTATTAGGTAG 58.687 52.381 4.53 0.00 35.16 3.18
968 981 2.457813 TGGGCCTCACGTATTAGGTA 57.542 50.000 4.53 0.00 35.16 3.08
969 982 1.575419 TTGGGCCTCACGTATTAGGT 58.425 50.000 4.53 0.00 35.16 3.08
970 983 2.702592 TTTGGGCCTCACGTATTAGG 57.297 50.000 4.53 6.44 35.86 2.69
971 984 3.139077 GGATTTGGGCCTCACGTATTAG 58.861 50.000 4.53 0.00 0.00 1.73
972 985 2.506231 TGGATTTGGGCCTCACGTATTA 59.494 45.455 4.53 0.00 0.00 0.98
973 986 1.283613 TGGATTTGGGCCTCACGTATT 59.716 47.619 4.53 0.00 0.00 1.89
974 987 0.916086 TGGATTTGGGCCTCACGTAT 59.084 50.000 4.53 0.00 0.00 3.06
975 988 0.251916 CTGGATTTGGGCCTCACGTA 59.748 55.000 4.53 0.00 0.00 3.57
976 989 1.002134 CTGGATTTGGGCCTCACGT 60.002 57.895 4.53 0.00 0.00 4.49
977 990 1.750399 CCTGGATTTGGGCCTCACG 60.750 63.158 4.53 0.00 0.00 4.35
978 991 0.394899 CTCCTGGATTTGGGCCTCAC 60.395 60.000 4.53 0.00 0.00 3.51
979 992 0.549902 TCTCCTGGATTTGGGCCTCA 60.550 55.000 4.53 0.00 0.00 3.86
980 993 0.625849 TTCTCCTGGATTTGGGCCTC 59.374 55.000 4.53 0.00 0.00 4.70
981 994 1.084018 TTTCTCCTGGATTTGGGCCT 58.916 50.000 4.53 0.00 0.00 5.19
982 995 1.758862 CATTTCTCCTGGATTTGGGCC 59.241 52.381 0.00 0.00 0.00 5.80
983 996 1.137675 GCATTTCTCCTGGATTTGGGC 59.862 52.381 0.00 0.00 0.00 5.36
984 997 2.743553 AGCATTTCTCCTGGATTTGGG 58.256 47.619 0.00 0.00 0.00 4.12
985 998 3.765511 TCAAGCATTTCTCCTGGATTTGG 59.234 43.478 0.00 0.00 0.00 3.28
986 999 5.395682 TTCAAGCATTTCTCCTGGATTTG 57.604 39.130 0.00 0.00 0.00 2.32
987 1000 4.465305 CCTTCAAGCATTTCTCCTGGATTT 59.535 41.667 0.00 0.00 0.00 2.17
988 1001 4.021916 CCTTCAAGCATTTCTCCTGGATT 58.978 43.478 0.00 0.00 0.00 3.01
989 1002 3.629087 CCTTCAAGCATTTCTCCTGGAT 58.371 45.455 0.00 0.00 0.00 3.41
990 1003 2.881403 GCCTTCAAGCATTTCTCCTGGA 60.881 50.000 0.00 0.00 0.00 3.86
991 1004 1.475682 GCCTTCAAGCATTTCTCCTGG 59.524 52.381 0.00 0.00 0.00 4.45
992 1005 1.131883 CGCCTTCAAGCATTTCTCCTG 59.868 52.381 0.00 0.00 0.00 3.86
993 1006 1.457346 CGCCTTCAAGCATTTCTCCT 58.543 50.000 0.00 0.00 0.00 3.69
994 1007 0.453390 CCGCCTTCAAGCATTTCTCC 59.547 55.000 0.00 0.00 0.00 3.71
995 1008 0.179153 GCCGCCTTCAAGCATTTCTC 60.179 55.000 0.00 0.00 0.00 2.87
996 1009 1.598701 GGCCGCCTTCAAGCATTTCT 61.599 55.000 0.71 0.00 0.00 2.52
997 1010 1.153765 GGCCGCCTTCAAGCATTTC 60.154 57.895 0.71 0.00 0.00 2.17
998 1011 2.649129 GGGCCGCCTTCAAGCATTT 61.649 57.895 9.86 0.00 0.00 2.32
999 1012 3.070576 GGGCCGCCTTCAAGCATT 61.071 61.111 9.86 0.00 0.00 3.56
1042 1055 4.247380 GATGCTCTCGGCCAGGGG 62.247 72.222 2.24 0.00 40.92 4.79
1043 1056 2.937379 CTTGATGCTCTCGGCCAGGG 62.937 65.000 2.24 0.00 40.92 4.45
1044 1057 1.523258 CTTGATGCTCTCGGCCAGG 60.523 63.158 2.24 0.00 40.92 4.45
1045 1058 0.107993 TTCTTGATGCTCTCGGCCAG 60.108 55.000 2.24 0.00 40.92 4.85
1046 1059 0.107993 CTTCTTGATGCTCTCGGCCA 60.108 55.000 2.24 0.00 40.92 5.36
1047 1060 0.813210 CCTTCTTGATGCTCTCGGCC 60.813 60.000 0.00 0.00 40.92 6.13
1055 1068 1.372087 CGACAGGGCCTTCTTGATGC 61.372 60.000 1.32 0.00 0.00 3.91
1128 1141 1.211969 GCTGAGGTACGCGTCTTCA 59.788 57.895 18.63 17.90 0.00 3.02
1131 1144 1.433879 GATGCTGAGGTACGCGTCT 59.566 57.895 18.63 7.86 38.72 4.18
1235 1254 1.303888 TAACGGACGGTGAGCTCCT 60.304 57.895 12.15 0.00 0.00 3.69
1268 1287 3.612247 AAGGCGTCGCTGAGGCAAT 62.612 57.895 18.11 8.92 44.00 3.56
1515 1540 4.742649 AGGGTCGCGAGCTCCTCA 62.743 66.667 34.07 0.00 0.00 3.86
1529 1554 2.494918 GGATCGTGACGTCCAGGG 59.505 66.667 14.12 0.00 34.57 4.45
1692 1726 1.330306 CCTTCTCGCGCATGTTTTTG 58.670 50.000 8.75 0.00 0.00 2.44
1723 1757 0.037697 CAGTTGCCGTAGTAGCCACA 60.038 55.000 0.00 0.00 0.00 4.17
1725 1759 1.079405 GCAGTTGCCGTAGTAGCCA 60.079 57.895 0.00 0.00 34.31 4.75
1818 1852 3.379865 TATGTCCGCGTGGCCCTTC 62.380 63.158 11.05 0.00 34.14 3.46
1842 1876 2.819595 CCGGCGTCCATCAACAGG 60.820 66.667 6.01 0.00 0.00 4.00
1867 1901 3.717294 GCCCAGATCCACCACCGT 61.717 66.667 0.00 0.00 0.00 4.83
1871 1905 3.731728 GCCTGCCCAGATCCACCA 61.732 66.667 0.00 0.00 0.00 4.17
1911 1945 4.193334 CTGGAGACGGCGATCGCA 62.193 66.667 38.00 17.34 44.11 5.10
2431 2705 1.227704 TAATGCCCACGTATGCCGG 60.228 57.895 0.00 0.00 42.24 6.13
2909 3199 0.462225 TTTGACTTTGCACGGACGGA 60.462 50.000 0.00 0.00 0.00 4.69
2987 3277 1.523938 GCTCCGGTGGCATTCCTAC 60.524 63.158 15.08 0.00 0.00 3.18
2991 3281 3.195698 GACGCTCCGGTGGCATTC 61.196 66.667 18.63 11.81 0.00 2.67
3018 3308 0.980754 ACCACCCCGCATGTATGAGA 60.981 55.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.